Glires	ANCESTRAL SPECIES	2	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000162859	ENSGT00940000160975 #18	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00650000094763	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a #31	ENSGT00550000074831 #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36
Rodentia	ANCESTRAL SPECIES	2	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000162859	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00650000094763	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a #31	ENSGT00550000074831 #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36
Rodentia_A	ANCESTRAL SPECIES	27	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000160975 #18	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00650000094763	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a #31	ENSGT00550000074831 #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36
Sciuridae	ANCESTRAL SPECIES	41	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000160975 #18	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT00940000156493 #28	ENSGT00390000010697 #29	ENSGT00550000074831 #30	ENSGT00390000008631.a #31	ENSGT00940000159731 #32	ENSGT01020000230354.A.a #33	ENSGT00940000159882	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36	ENSGT00940000158653 #37
Eurasian red squirrel	MODERN SPECIES	10	LRRN1 (ENSSVLG00005025801) #7	ENSSVLG00005025803 #8	CRBN (ENSSVLG00005025805) #9	TRNT1 (ENSSVLG00005025808) #10	IL5RA (ENSSVLG00005025823) #11	CNTN4 (ENSSVLG00005025842) #12	CNTN6 (ENSSVLG00005025861) #13	CHL1 (ENSSVLG00005025877) #14	CNTN3 (ENSSVLG00005025887) #15	ENSSVLG00005010270 #16	PDZRN3 (ENSSVLG00005010337) #17	ENSSVLG00005010375 #18	GXYLT2 (ENSSVLG00005010448) #19	SHQ1 (ENSSVLG00005010502) #20	RYBP (ENSSVLG00005010589) #21	PROK2 (ENSSVLG00005010626) #22	GPR27 (ENSSVLG00005010691) #23	EIF4E3 (ENSSVLG00005010716) #24	FOXP1 (ENSSVLG00005010914) #25	MDFIC2 (ENSSVLG00005011514) #26	MITF (ENSSVLG00005011612) #27	EOGT (ENSSVLG00005012215) #28	TMF1 (ENSSVLG00005012312) #29	UBA3 (ENSSVLG00005012414) #30	ARL6IP5 (ENSSVLG00005012505) #31	LMOD3 (ENSSVLG00005012544) #32	FRMD4B (ENSSVLG00005012609) #33	TAFA1 (ENSSVLG00005013002) #34	ENSSVLG00005013072 #35	SUCLG2 (ENSSVLG00005013123) #36	ENSSVLG00005013244 #37
Marmotini	ANCESTRAL SPECIES	49	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000160975 #18	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT00940000156493 #28	ENSGT00390000010697 #29	ENSGT00550000074831 #30	ENSGT00390000008631.a #31	ENSGT00940000159731 #32	ENSGT01020000230354.A.a #33	ENSGT00940000159882	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36	ENSGT00940000158653 #37
Alpin marmot	MODERN SPECIES	40	SUMF1 (ENSMMMG00000007589)	ENSMMMG00000007561	LRRN1 (ENSMMMG00000007534) #7	CRBN (ENSMMMG00000007485) #9	TRNT1 (ENSMMMG00000007463) #10	IL5RA (ENSMMMG00000007442) #11	CNTN4 (ENSMMMG00000007297) #12	CNTN6 (ENSMMMG00000007205) #13	CHL1 (ENSMMMG00000007097) #14	CNTN3 (ENSMMMG00000007027) #15	PDZRN3 (ENSMMMG00000006989) #17	ENSMMMG00000006977	GXYLT2 (ENSMMMG00000006933) #19	SHQ1 (ENSMMMG00000006887) #20	RYBP (ENSMMMG00000006873) #21	PROK2 (ENSMMMG00000006869) #22	ENSMMMG00000006861 #24	FOXP1 (ENSMMMG00000006149) #25	MDFIC2 (ENSMMMG00000006133) #26	MITF (ENSMMMG00000006045) #27	EOGT (ENSMMMG00000006008) #28	TMF1 (ENSMMMG00000005057) #29	UBA3 (ENSMMMG00000004980) #30	ARL6IP5 (ENSMMMG00000004969) #31	LMOD3 (ENSMMMG00000004950) #32	FRMD4B (ENSMMMG00000004812) #33	ENSMMMG00000004803	TAFA1 (ENSMMMG00000004799) #34	SUCLG2 (ENSMMMG00000004779) #36	KBTBD8 (ENSMMMG00000004770) #37	ENSMMMG00000004766
Marmotini_b	ANCESTRAL SPECIES	188										ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000160975 #18	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT00940000156493 #28	ENSGT00390000010697 #29	ENSGT00550000074831 #30	ENSGT00390000008631.a #31	ENSGT00940000159731 #32	ENSGT01020000230354.A.a #33	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36	ENSGT00940000158653 #37
Squirrel	MODERN SPECIES	203										CNTN3 (ENSSTOG00000010775) #15	PDZRN3 (ENSSTOG00000020243) #17	PPP4R2 (ENSSTOG00000024451) #18	GXYLT2 (ENSSTOG00000010059) #19	SHQ1 (ENSSTOG00000010043) #20	RYBP (ENSSTOG00000000185) #21	PROK2 (ENSSTOG00000000976) #22	EIF4E3 (ENSSTOG00000020469) #24	FOXP1 (ENSSTOG00000025624) #25	MDFIC2 (ENSSTOG00000021337) #26	MITF (ENSSTOG00000005880) #27	EOGT (ENSSTOG00000003163) #28	TMF1 (ENSSTOG00000028312) #29	UBA3 (ENSSTOG00000003215) #30	ARL6IP5 (ENSSTOG00000025065) #31	LMOD3 (ENSSTOG00000026793) #32	FRMD4B (ENSSTOG00000028861) #33	TAFA1 (ENSSTOG00000014757) #34	SUCLG2 (ENSSTOG00000020195) #36	KBTBD8 (ENSSTOG00000020443) #37
Arctic ground squirrel	MODERN SPECIES	106										CNTN3 (ENSUPAG00010021535) #15	PDZRN3 (ENSUPAG00010021559) #17	PPP4R2 (ENSUPAG00010021567) #18	GXYLT2 (ENSUPAG00010021574) #19	SHQ1 (ENSUPAG00010021581) #20	RYBP (ENSUPAG00010021587) #21	PROK2 (ENSUPAG00010021589) #22	GPR27 (ENSUPAG00010021592) #23	EIF4E3 (ENSUPAG00010021594) #24	FOXP1 (ENSUPAG00010021603) #25	MDFIC2 (ENSUPAG00010021824) #26	MITF (ENSUPAG00010021833) #27	EOGT (ENSUPAG00010021904) #28	TMF1 (ENSUPAG00010021909) #29	UBA3 (ENSUPAG00010021916) #30	ARL6IP5 (ENSUPAG00010021927) #31	LMOD3 (ENSUPAG00010021929) #32	FRMD4B (ENSUPAG00010021932) #33	TAFA1 (ENSUPAG00010021952) #34	SUCLG2 (ENSUPAG00010021955) #36
Hystricomorpha	ANCESTRAL SPECIES	34	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000160975 #18	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00650000094763	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a #31	ENSGT00550000074831.i #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36
Hystricomorpha_a	ANCESTRAL SPECIES	45	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000160975 #18	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a #31	ENSGT00550000074831.i #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36	ENSGT00940000158653 #37
Guinea pig	MODERN SPECIES	16	ENSCPOG00000019854	LRRN1 (ENSCPOG00000006583) #7	CRBN (ENSCPOG00000007851) #9	TRNT1 (ENSCPOG00000007849) #10	Il5ra (ENSCPOG00000007845) #11	CNTN4 (ENSCPOG00000026863) #12	CNTN6 (ENSCPOG00000001124) #13	CHL1 (ENSCPOG00000014986) #14	CNTN3 (ENSCPOG00000003218) #15	PDZRN3 (ENSCPOG00000030488) #17	PPP4R2 (ENSCPOG00000036245) #18	ENSCPOG00000030150	GXYLT2 (ENSCPOG00000000442) #19	SHQ1 (ENSCPOG00000011443) #20	RYBP (ENSCPOG00000032177) #21	PROK2 (ENSCPOG00000033908) #22	EIF4E3 (ENSCPOG00000000391) #24	FOXP1 (ENSCPOG00000003726) #25	MDFIC2 (ENSCPOG00000036240) #26	MITF (ENSCPOG00000014963) #27	FRMD4B (ENSCPOG00000037444) #33	LMOD3 (ENSCPOG00000013314) #32	ARL6IP5 (ENSCPOG00000033968) #31	UBA3 (ENSCPOG00000030763) #30	TMF1 (ENSCPOG00000013302) #29	EOGT (ENSCPOG00000013299) #28	TAFA4 (ENSCPOG00000013292)	TAFA1 (ENSCPOG00000014183) #34	SUCLG2 (ENSCPOG00000013421) #36	KBTBD8 (ENSCPOG00000012739) #37	LRIG1 (ENSCPOG00000002275)
Hystricomorpha_b	ANCESTRAL SPECIES	42	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000160975 #18	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a #31	ENSGT00550000074831.i #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36	ENSGT00940000158653 #37
Degu	MODERN SPECIES	71	CNTN6 (ENSODEG00000006499) #13	ENSODEG00000007284	ENSODEG00000019383	CHL1 (ENSODEG00000010169) #14	ENSODEG00000019392	CNTN3 (ENSODEG00000006512) #15	PDZRN3 (ENSODEG00000008618) #17	ENSODEG00000006984	ENSODEG00000006618	ENSODEG00000007939	ENSODEG00000007497	ENSODEG00000019359	GXYLT2 (ENSODEG00000008178) #19	SHQ1 (ENSODEG00000009192) #20	RYBP (ENSODEG00000008699) #21	PROK2 (ENSODEG00000007144) #22	GPR27 (ENSODEG00000006497) #23	EIF4E3 (ENSODEG00000006191) #24	FOXP1 (ENSODEG00000007047) #25	MDFIC2 (ENSODEG00000006638) #26	MITF (ENSODEG00000009287) #27	ENSODEG00000006902	FRMD4B (ENSODEG00000005588) #33	LMOD3 (ENSODEG00000005409) #32	ENSODEG00000007217	ARL6IP5 (ENSODEG00000006820) #31	ENSODEG00000007097 #30	TMF1 (ENSODEG00000007699) #29	EOGT (ENSODEG00000006871) #28	TAFA4 (ENSODEG00000005744)	ENSODEG00000019215
Long-tailed chinchilla	MODERN SPECIES	128	SUMF1 (ENSCLAG00000004509)	ENSCLAG00000005640	LRRN1 (ENSCLAG00000004896) #7	CRBN (ENSCLAG00000004930) #9	TRNT1 (ENSCLAG00000005186) #10	IL5RA (ENSCLAG00000005656) #11	CNTN4 (ENSCLAG00000006463) #12	CNTN6 (ENSCLAG00000008602) #13	CHL1 (ENSCLAG00000006459) #14	CNTN3 (ENSCLAG00000009614) #15	PDZRN3 (ENSCLAG00000010964) #17	PPP4R2 (ENSCLAG00000003231) #18	GXYLT2 (ENSCLAG00000003908) #19	SHQ1 (ENSCLAG00000004206) #20	RYBP (ENSCLAG00000006008) #21	PROK2 (ENSCLAG00000003618) #22	EIF4E3 (ENSCLAG00000003818) #24	FOXP1 (ENSCLAG00000004963) #25	MDFIC2 (ENSCLAG00000003152) #26	MITF (ENSCLAG00000003365) #27	ENSCLAG00000004383	FRMD4B (ENSCLAG00000003792) #33	LMOD3 (ENSCLAG00000006151) #32	ARL6IP5 (ENSCLAG00000003471) #31	UBA3 (ENSCLAG00000003651) #30	TMF1 (ENSCLAG00000004298) #29	EOGT (ENSCLAG00000004823) #28	TAFA4 (ENSCLAG00000011274)	TAFA1 (ENSCLAG00000011025) #34	SUCLG2 (ENSCLAG00000011578) #36	KBTBD8 (ENSCLAG00000013659) #37
Naked mole-rat female	MODERN SPECIES	28	ENSHGLG00000038160	CNTN6 (ENSHGLG00000003847) #13	ENSHGLG00000003621 #14	ENSHGLG00000042664	ENSHGLG00000002080 #15	ENSHGLG00000032578	ENSHGLG00000003660	ENSHGLG00000038372	ENSHGLG00000041034	ENSHGLG00000041798	PDZRN3 (ENSHGLG00000003072) #17	PPP4R2 (ENSHGLG00000002829) #18	GXYLT2 (ENSHGLG00000002778) #19	SHQ1 (ENSHGLG00000003637) #20	RYBP (ENSHGLG00000040203) #21	PROK2 (ENSHGLG00000046701) #22	GPR27 (ENSHGLG00000002574) #23	EIF4E3 (ENSHGLG00000019560) #24	ENSHGLG00000040329	FOXP1 (ENSHGLG00000002984) #25	MDFIC2 (ENSHGLG00000043866) #26	MITF (ENSHGLG00000002575) #27	FRMD4B (ENSHGLG00000003001) #33	LMOD3 (ENSHGLG00000019110) #32	ARL6IP5 (ENSHGLG00000039284) #31	UBA3 (ENSHGLG00000019309) #30	TMF1 (ENSHGLG00000013960) #29	EOGT (ENSHGLG00000014748) #28	TAFA4 (ENSHGLG00000047561)	ENSHGLG00000009657	TAFA1 (ENSHGLG00000007920) #34
Rodentia_B	ANCESTRAL SPECIES	26	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000162859	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a #31	ENSGT00550000074831 #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36	ENSGT00940000158653 #37
Myomorpha	ANCESTRAL SPECIES	36	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000162859	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a #31	ENSGT00550000074831 #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36	ENSGT00940000158653 #37
Muroidea	ANCESTRAL SPECIES	37	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000162859	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a #31	ENSGT00550000074831 #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36	ENSGT00940000158653 #37
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000162859	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a #31	ENSGT00550000074831 #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00440000035348.l	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000162859	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a #31	ENSGT00550000074831 #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00440000035348.l	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000162859	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a #31	ENSGT00550000074831 #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36	ENSGT00940000158653 #37
Chinese hamster chok1gshd	MODERN SPECIES	144	Trnt1 (ENSCGRG00001009998) #10	Il5ra (ENSCGRG00001023890) #11	Cntn4 (ENSCGRG00001005552) #12	Cntn6 (ENSCGRG00001012547) #13	Chl1 (ENSCGRG00001021609) #14	ENSCGRG00001015306	ENSCGRG00001015607	Cntn3 (ENSCGRG00001013551) #15	ENSCGRG00001003940	Pdzrn3 (ENSCGRG00001017365) #17	Ppp4r2 (ENSCGRG00001010724)	Gxylt2 (ENSCGRG00001012822) #19	Shq1 (ENSCGRG00001012583) #20	Rybp (ENSCGRG00001020152) #21	ENSCGRG00001005960	Prok2 (ENSCGRG00001020805) #22	Gpr27 (ENSCGRG00001001036) #23	Eif4e3 (ENSCGRG00001016500) #24	Foxp1 (ENSCGRG00001015802) #25	Mdfic2 (ENSCGRG00001018361) #26	Mitf (ENSCGRG00001011883) #27	Frmd4b (ENSCGRG00001020840) #33	Lmod3 (ENSCGRG00001010389) #32	Arl6ip5 (ENSCGRG00001018813) #31	Uba3 (ENSCGRG00001022490) #30	Tmf1 (ENSCGRG00001018858) #29	Eogt (ENSCGRG00001015087) #28	Tafa4 (ENSCGRG00001013503)	ENSCGRG00001008617	Nup50l (ENSCGRG00001006226)	Tafa1 (ENSCGRG00001014933) #34
Golden Hamster	MODERN SPECIES	643									Cntn3 (ENSMAUG00000010639) #15	Pdzrn3 (ENSMAUG00000007003) #17	Ppp4r2 (ENSMAUG00000010766)	Gxylt2 (ENSMAUG00000021811) #19	Shq1 (ENSMAUG00000022030) #20	ENSMAUG00000010991	Rybp (ENSMAUG00000010834) #21	Prok2 (ENSMAUG00000007849) #22	Gpr27 (ENSMAUG00000010831) #23	Eif4e3 (ENSMAUG00000019824) #24	Foxp1 (ENSMAUG00000022171) #25	Mdfic2 (ENSMAUG00000012915) #26	Mitf (ENSMAUG00000004545) #27	Frmd4b (ENSMAUG00000007225) #33	Lmod3 (ENSMAUG00000010204) #32	Arl6ip5 (ENSMAUG00000009657) #31	Uba3 (ENSMAUG00000017525) #30	Tmf1 (ENSMAUG00000021427) #29	Eogt (ENSMAUG00000017534) #28	ENSMAUG00000020979	Tafa4 (ENSMAUG00000019968)	Tafa1 (ENSMAUG00000019067) #34	Suclg2 (ENSMAUG00000021321) #36
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000160975 #18	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a #31	ENSGT00550000074831 #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00440000035348.l	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36
Prairie vole	MODERN SPECIES	84	Il5ra (ENSMOCG00000015311) #11	Cntn4 (ENSMOCG00000013257) #12	Cntn6 (ENSMOCG00000005399) #13	ENSMOCG00000009333	ENSMOCG00000016932	ENSMOCG00000020899 #14	ENSMOCG00000002512 #14	ENSMOCG00000021562	Cntn3 (ENSMOCG00000007453) #15	ENSMOCG00000009808	Pdzrn3 (ENSMOCG00000015544) #17	ENSMOCG00000000955 #18	Gxylt2 (ENSMOCG00000001994) #19	Shq1 (ENSMOCG00000017836) #20	ENSMOCG00000006102 #21	Prok2 (ENSMOCG00000016202) #22	Gpr27 (ENSMOCG00000010723) #23	Eif4e3 (ENSMOCG00000020297) #24	Foxp1 (ENSMOCG00000013376) #25	Mdfic2 (ENSMOCG00000007282) #26	Mitf (ENSMOCG00000021092) #27	Frmd4b (ENSMOCG00000016753) #33	Lmod3 (ENSMOCG00000013878) #32	Arl6ip5 (ENSMOCG00000012711) #31	Uba3 (ENSMOCG00000022540) #30	Tmf1 (ENSMOCG00000021252) #29	Eogt (ENSMOCG00000010159) #28	Tafa4 (ENSMOCG00000019487)	Tafa1 (ENSMOCG00000005890) #34	Suclg2 (ENSMOCG00000019822) #36	ENSMOCG00000017135
Northern American deer mouse	MODERN SPECIES	16	Sumf1 (ENSPEMG00000012549)	Setmar (ENSPEMG00000023423)	Lrrn1 (ENSPEMG00000019903) #7	Crbn (ENSPEMG00000020177) #9	Trnt1 (ENSPEMG00000019845) #10	Il5ra (ENSPEMG00000000193) #11	Cntn4 (ENSPEMG00000020085) #12	Cntn6 (ENSPEMG00000019384) #13	Chl1 (ENSPEMG00000023675) #14	Cntn3 (ENSPEMG00000014200) #15	Pdzrn3 (ENSPEMG00000019769) #17	Gxylt2 (ENSPEMG00000005596) #19	Shq1 (ENSPEMG00000000251) #20	ENSPEMG00000017621 #21	ENSPEMG00000028366	Prok2 (ENSPEMG00000030947) #22	ENSPEMG00000026210	Gpr27 (ENSPEMG00000030430) #23	Eif4e3 (ENSPEMG00000015380) #24	Foxp1 (ENSPEMG00000010742) #25	ENSPEMG00000026818	Mdfic2 (ENSPEMG00000002945) #26	Mitf (ENSPEMG00000002848) #27	Frmd4b (ENSPEMG00000018860) #33	Lmod3 (ENSPEMG00000016784) #32	Arl6ip5 (ENSPEMG00000016527) #31	Uba3 (ENSPEMG00000014697) #30	Tmf1 (ENSPEMG00000012807) #29	Eogt (ENSPEMG00000010950) #28	Tafa4 (ENSPEMG00000009755)	Nup50l (ENSPEMG00000030682)
Murinae	ANCESTRAL SPECIES	4	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000162859	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a #31	ENSGT00550000074831 #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00440000035348.l	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36
Mus	ANCESTRAL SPECIES	12	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000162859	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a #31	ENSGT00550000074831 #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00440000035348.l	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36
Mus_A	ANCESTRAL SPECIES	7	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000162859	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a.e #31	ENSGT00550000074831 #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00440000035348.l	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36
Mus_B	ANCESTRAL SPECIES	15	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000162859	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a.e #31	ENSGT00550000074831 #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00440000035348.l	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36
Mouse	MODERN SPECIES	15	Sumf1 (ENSMUSG00000030101)	Setmar (ENSMUSG00000034639)	Lrrn1 (ENSMUSG00000034648) #7	Crbn (ENSMUSG00000005362) #9	Trnt1 (ENSMUSG00000013736) #10	Il5ra (ENSMUSG00000005364) #11	Cntn4 (ENSMUSG00000064293) #12	Cntn6 (ENSMUSG00000030092) #13	Chl1 (ENSMUSG00000030077) #14	Cntn3 (ENSMUSG00000030075) #15	Pdzrn3 (ENSMUSG00000035357) #17	Ppp4r2 (ENSMUSG00000052144)	Gxylt2 (ENSMUSG00000030074) #19	Shq1 (ENSMUSG00000035378) #20	Rybp (ENSMUSG00000072872) #21	Prok2 (ENSMUSG00000030069) #22	Gpr27 (ENSMUSG00000072875) #23	Eif4e3 (ENSMUSG00000093661) #24	Foxp1 (ENSMUSG00000030067) #25	Mdfic2 (ENSMUSG00000090667) #26	Mitf (ENSMUSG00000035158) #27	Frmd4b (ENSMUSG00000030064) #33	Lmod3 (ENSMUSG00000044086) #32	Arl6ip5 (ENSMUSG00000035199) #31	Uba3 (ENSMUSG00000030061) #30	Tmf1 (ENSMUSG00000030059) #29	Eogt (ENSMUSG00000035245) #28	Tafa4 (ENSMUSG00000046500)	Nup50l (ENSMUSG00000072878)	Tafa1 (ENSMUSG00000059187) #34	Suclg2 (ENSMUSG00000061838) #36
Mus_C	ANCESTRAL SPECIES	18	ENSGT00390000008983.a	ENSGT00940000162663	ENSGT00940000157154.d #7	ENSGT00390000016404 #9	ENSGT00390000009678 #10	ENSGT00940000160890 #11	ENSGT00940000155198.C #12	ENSGT00940000160606 #13	ENSGT00940000160080 #14	ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000162859	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00890000139436.A.a #23	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a.e #31	ENSGT00550000074831 #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00440000035348.l	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36
spretus	MODERN SPECIES	15	Sumf1 (MGP_SPRETEiJ_G0029730)	Setmar (MGP_SPRETEiJ_G0029729)	Lrrn1 (MGP_SPRETEiJ_G0029728) #7	Crbn (MGP_SPRETEiJ_G0029727) #9	Trnt1 (MGP_SPRETEiJ_G0029726) #10	Il5ra (MGP_SPRETEiJ_G0029725) #11	Cntn4 (MGP_SPRETEiJ_G0029724) #12	Cntn6 (MGP_SPRETEiJ_G0029723) #13	Chl1 (MGP_SPRETEiJ_G0029722) #14	Cntn3 (MGP_SPRETEiJ_G0029721) #15	Pdzrn3 (MGP_SPRETEiJ_G0029720) #17	Ppp4r2 (MGP_SPRETEiJ_G0029719)	Gxylt2 (MGP_SPRETEiJ_G0029718) #19	Shq1 (MGP_SPRETEiJ_G0029717) #20	Rybp (MGP_SPRETEiJ_G0029716) #21	Prok2 (MGP_SPRETEiJ_G0029715) #22	Gpr27 (MGP_SPRETEiJ_G0029714) #23	Eif4e3 (MGP_SPRETEiJ_G0029713) #24	MGP_SPRETEiJ_G0029712	Foxp1 (MGP_SPRETEiJ_G0029711) #25	Mdfic2 (MGP_SPRETEiJ_G0029710) #26	Mitf (MGP_SPRETEiJ_G0029709) #27	Frmd4b (MGP_SPRETEiJ_G0029708) #33	Lmod3 (MGP_SPRETEiJ_G0029707) #32	Arl6ip5 (MGP_SPRETEiJ_G0029706) #31	Uba3 (MGP_SPRETEiJ_G0029705) #30	Tmf1 (MGP_SPRETEiJ_G0029704) #29	Eogt (MGP_SPRETEiJ_G0029703) #28	Tafa4 (MGP_SPRETEiJ_G0029702)	Nup50l (MGP_SPRETEiJ_G0029701)	Tafa1 (MGP_SPRETEiJ_G0029700) #34
Steppe mouse	MODERN SPECIES	3356									Cntn3 (ENSMSIG00000030860) #15	Pdzrn3 (ENSMSIG00000030855) #17	Ppp4r2 (ENSMSIG00000030852)	Gxylt2 (ENSMSIG00000030850) #19	Shq1 (ENSMSIG00000030841) #20	Rybp (ENSMSIG00000030836) #21	ENSMSIG00000030829	Prok2 (ENSMSIG00000030827) #22	Gpr27 (ENSMSIG00000030826) #23	Eif4e3 (ENSMSIG00000030822) #24	Foxp1 (ENSMSIG00000030580) #25	Mdfic2 (ENSMSIG00000030573) #26	ENSMSIG00000030568	Mitf (ENSMSIG00000030546) #27	ENSMSIG00000030528
Ryukyu mouse	MODERN SPECIES	15	Sumf1 (MGP_CAROLIEiJ_G0028702)	Setmar (MGP_CAROLIEiJ_G0028701)	Lrrn1 (MGP_CAROLIEiJ_G0028700) #7	Crbn (MGP_CAROLIEiJ_G0028699) #9	Trnt1 (MGP_CAROLIEiJ_G0028698) #10	Il5ra (MGP_CAROLIEiJ_G0028697) #11	Cntn4 (MGP_CAROLIEiJ_G0028696) #12	Cntn6 (MGP_CAROLIEiJ_G0028695) #13	Chl1 (MGP_CAROLIEiJ_G0028694) #14	Cntn3 (MGP_CAROLIEiJ_G0028693) #15	Pdzrn3 (MGP_CAROLIEiJ_G0028692) #17	Ppp4r2 (MGP_CAROLIEiJ_G0028691)	Gxylt2 (MGP_CAROLIEiJ_G0028690) #19	Shq1 (MGP_CAROLIEiJ_G0028689) #20	Rybp (MGP_CAROLIEiJ_G0028688) #21	Prok2 (MGP_CAROLIEiJ_G0028687) #22	Gpr27 (MGP_CAROLIEiJ_G0028686) #23	Eif4e3 (MGP_CAROLIEiJ_G0028685) #24	MGP_CAROLIEiJ_G0028684	Foxp1 (MGP_CAROLIEiJ_G0028683) #25	Mdfic2 (MGP_CAROLIEiJ_G0028682) #26	Mitf (MGP_CAROLIEiJ_G0028681) #27	MGP_CAROLIEiJ_G0028680	Arl6ip5 (MGP_CAROLIEiJ_G0028679) #31	MGP_CAROLIEiJ_G0028678	MGP_CAROLIEiJ_G0028677 #29	MGP_CAROLIEiJ_G0028676 #28	MGP_CAROLIEiJ_G0028675	Nup50l (MGP_CAROLIEiJ_G0028674)	MGP_CAROLIEiJ_G0028673 #34	Suclg2 (MGP_CAROLIEiJ_G0028672) #36
Shrew mouse	MODERN SPECIES	11	Sumf1 (MGP_PahariEiJ_G0022453)	Setmar (MGP_PahariEiJ_G0022452)	Lrrn1 (MGP_PahariEiJ_G0022451) #7	Crbn (MGP_PahariEiJ_G0022450) #9	Trnt1 (MGP_PahariEiJ_G0022449) #10	Il5ra (MGP_PahariEiJ_G0022448) #11	MGP_PahariEiJ_G0022447 #12	Cntn6 (MGP_PahariEiJ_G0022446) #13	Chl1 (MGP_PahariEiJ_G0022445) #14	Cntn3 (MGP_PahariEiJ_G0022444) #15	Pdzrn3 (MGP_PahariEiJ_G0022443) #17	Ppp4r2 (MGP_PahariEiJ_G0022442)	Gxylt2 (MGP_PahariEiJ_G0022441) #19	Shq1 (MGP_PahariEiJ_G0022440) #20	Rybp (MGP_PahariEiJ_G0022439) #21	Prok2 (MGP_PahariEiJ_G0022438) #22	Gpr27 (MGP_PahariEiJ_G0022437) #23	Eif4e3 (MGP_PahariEiJ_G0022436) #24	MGP_PahariEiJ_G0022435	Foxp1 (MGP_PahariEiJ_G0022434) #25	Mdfic2 (MGP_PahariEiJ_G0022433) #26	Mitf (MGP_PahariEiJ_G0022432) #27	Frmd4b (MGP_PahariEiJ_G0022431) #33	Lmod3 (MGP_PahariEiJ_G0022430) #32	Arl6ip5 (MGP_PahariEiJ_G0022429) #31	Uba3 (MGP_PahariEiJ_G0022428) #30	Tmf1 (MGP_PahariEiJ_G0022427) #29	Eogt (MGP_PahariEiJ_G0022426) #28	Tafa4 (MGP_PahariEiJ_G0022425)	Nup50l (MGP_PahariEiJ_G0022424)	Tafa1 (MGP_PahariEiJ_G0022423) #34
Rat	MODERN SPECIES	14	Trnt1 (ENSRNOG00000006432) #10	Il5ra (ENSRNOG00000005954) #11	Cntn4 (ENSRNOG00000005652) #12	Cntn6 (ENSRNOG00000032517) #13	AABR07061614.1 (ENSRNOG00000032820)	ENSRNOG00000065903	Chl1 (ENSRNOG00000045771) #14	Cntn3 (ENSRNOG00000006144) #15	Pdzrn3 (ENSRNOG00000057556) #17	Ppp4r2 (ENSRNOG00000024647)	Gxylt2 (ENSRNOG00000005621) #19	Actg1-ps9 (ENSRNOG00000062691)	Shq1 (ENSRNOG00000005433) #20	LOC120102351 (ENSRNOG00000005353) #21	LOC120102174 (ENSRNOG00000033673)	Prok2 (ENSRNOG00000010898) #22	Ier3ip1-ps1 (ENSRNOG00000030004)	Gpr27 (ENSRNOG00000010880) #23	Eif4e3 (ENSRNOG00000010301) #24	Foxp1 (ENSRNOG00000009184) #25	Mdfic2 (ENSRNOG00000064294) #26	Mitf (ENSRNOG00000008658) #27	Frmd4b (ENSRNOG00000007764) #33	Lmod3 (ENSRNOG00000032443) #32	Arl6ip5 (ENSRNOG00000006818) #31	Uba3 (ENSRNOG00000006221) #30	Tmf1 (ENSRNOG00000056462) #29	Eogt (ENSRNOG00000024533) #28	Tafa4 (ENSRNOG00000005830)	Nup50-ps1 (ENSRNOG00000024560)	LOC108353456 (ENSRNOG00000070575) #34
Upper Galilee mountains blind mole rat	MODERN SPECIES	763										Cntn3 (ENSNGAG00000022686) #15	Pdzrn3 (ENSNGAG00000023079) #17	ENSNGAG00000023250 #18	Gxylt2 (ENSNGAG00000003681) #19	Shq1 (ENSNGAG00000023317) #20	Rybp (ENSNGAG00000006529) #21	Prok2 (ENSNGAG00000020136) #22	Gpr27 (ENSNGAG00000004137) #23	Eif4e3 (ENSNGAG00000000837) #24
Lesser Egyptian jerboa	MODERN SPECIES	45	Crbn (ENSJJAG00000011234) #9	Trnt1 (ENSJJAG00000018561) #10	Il5ra (ENSJJAG00000010396) #11	Cntn4 (ENSJJAG00000023102) #12	ENSJJAG00000010075	Cntn6 (ENSJJAG00000013679) #13	ENSJJAG00000017679	Chl1 (ENSJJAG00000020689) #14	ENSJJAG00000000622 #31	Cntn3 (ENSJJAG00000012448) #15	Pdzrn3 (ENSJJAG00000000291) #17	ENSJJAG00000022712 #18	Gxylt2 (ENSJJAG00000013774) #19	Shq1 (ENSJJAG00000017611) #20	Rybp (ENSJJAG00000017045) #21	Prok2 (ENSJJAG00000021320) #22	Gpr27 (ENSJJAG00000011153) #23	Eif4e3 (ENSJJAG00000002638) #24	Foxp1 (ENSJJAG00000022621) #25	Mdfic2 (ENSJJAG00000012963) #26	Mitf (ENSJJAG00000018472) #27	Frmd4b (ENSJJAG00000023390) #33	Minar2 (ENSJJAG00000000279)	Adamts19 (ENSJJAG00000021431)	Isoc1 (ENSJJAG00000019157)	Slc27a6 (ENSJJAG00000020519)	ENSJJAG00000017710	Fbn2 (ENSJJAG00000020592)	Slc12a2 (ENSJJAG00000019580)	ENSJJAG00000017426	Ctxn3 (ENSJJAG00000011014)
Kangaroo rat	MODERN SPECIES	331	Sumf1 (ENSDORG00000006695)	Setmar (ENSDORG00000026212)	Lrrn1 (ENSDORG00000023814) #7	Crbn (ENSDORG00000014038) #9	Trnt1 (ENSDORG00000014035) #10	Il5ra (ENSDORG00000014033) #11	Cntn4 (ENSDORG00000014028) #12	Cntn6 (ENSDORG00000005702) #13	Chl1 (ENSDORG00000010546) #14	Cntn3 (ENSDORG00000000121) #15	Pdzrn3 (ENSDORG00000002686) #17	ENSDORG00000023761	Gxylt2 (ENSDORG00000010918) #19	ENSDORG00000029850 #20	Rybp (ENSDORG00000015021) #21	Prok2 (ENSDORG00000006150) #22	Eif4e3 (ENSDORG00000006531) #24	Foxp1 (ENSDORG00000009604) #25	Mdfic2 (ENSDORG00000029192) #26	Mitf (ENSDORG00000003336) #27	Frmd4b (ENSDORG00000002184) #33	Lmod3 (ENSDORG00000000518) #32	Arl6ip5 (ENSDORG00000029346) #31	Uba3 (ENSDORG00000000516) #30	Tmf1 (ENSDORG00000000515) #29	Eogt (ENSDORG00000000514) #28	Tafa4 (ENSDORG00000028398)	Tafa1 (ENSDORG00000008222) #34	Suclg2 (ENSDORG00000016563) #36	Kbtbd8 (ENSDORG00000000438) #37	Lrig1 (ENSDORG00000003508)
Lagomorpha	ANCESTRAL SPECIES	11										ENSGT00940000160282 #15	ENSGT00950000183062.a.a.a #17	ENSGT00940000160975 #18	ENSGT00940000158065 #19	ENSGT00390000007605 #20	ENSGT00390000013995.b.a #21	ENSGT00940000162026 #22	ENSGT00940000155865 #24	ENSGT00940000159892 #25	ENSGT00730000111641 #26	ENSGT00940000156326 #27	ENSGT01020000230354.A.a #33	ENSGT00940000159731 #32	ENSGT00390000008631.a #31	ENSGT00550000074831 #30	ENSGT00390000010697 #29	ENSGT00940000156493 #28	ENSGT00940000159882	ENSGT00940000162607 #34	ENSGT00390000010170.a.a #36	ENSGT00940000158653 #37	ENSGT00940000158502
Pika	MODERN SPECIES	5538																PROK2 (ENSOPRG00000014747) #22	EIF4E3 (ENSOPRG00000014732) #24	FOXP1 (ENSOPRG00000014706) #25
Rabbit	MODERN SPECIES	20	ENSOCUG00000010081	ENSOCUG00000022648	ZSCAN16 (ENSOCUG00000039537)	ZKSCAN8 (ENSOCUG00000006850)	ORYCUNV1R1530 (ENSOCUG00000038616)	ENSOCUG00000021210	ENSOCUG00000024463	ENSOCUG00000033110	ENSOCUG00000030000	CNTN3 (ENSOCUG00000013181) #15	PDZRN3 (ENSOCUG00000007731) #17	PPP4R2 (ENSOCUG00000006235) #18	GXYLT2 (ENSOCUG00000016704) #19	SHQ1 (ENSOCUG00000016695) #20	RYBP (ENSOCUG00000011730) #21	PROK2 (ENSOCUG00000006542) #22	ENSOCUG00000000259 #24	FOXP1 (ENSOCUG00000007155) #25	ENSOCUG00000035312	ENSOCUG00000036468	MDFIC2 (ENSOCUG00000031604) #26	MITF (ENSOCUG00000002190) #27	ENSOCUG00000026608	FRMD4B (ENSOCUG00000002887) #33	LMOD3 (ENSOCUG00000008188) #32	ARL6IP5 (ENSOCUG00000008184) #31	UBA3 (ENSOCUG00000008169) #30	TMF1 (ENSOCUG00000008154) #29	ENSOCUG00000016492	EOGT (ENSOCUG00000012022) #28	ENSOCUG00000031619