Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00390000003224.B	ENSGT00390000013208 #7	ENSGT00940000153588.a.b #8	ENSGT00940000159122 #9	ENSGT01030000234549.a.a.a.a.b #11	ENSGT01010000222360.E.c #10	ENSGT00940000161477 #12	ENSGT00940000162027 #13	ENSGT00390000014201 #14	ENSGT00940000154156.d #15	ENSGT00730000111591 #16	ENSGT00550000074976 #17	ENSGT00390000011772 #18	ENSGT00940000159260 #21	ENSGT00510000047270 #20	ENSGT00940000161709 #22	ENSGT00950000183157.b #23	ENSGT00940000156878 #24	ENSGT00940000153772.A #25	ENSGT00390000008140 #26	ENSGT01030000234648.a.b.a.a.b #27	ENSGT00390000018285	ENSGT01100000263518.B.b.b	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a	ENSGT01020000230364.a.a.b.b	ENSGT01020000230364.a.b	ENSGT00730000110895.b.a	ENSGT00940000156567	ENSGT00940000157073	ENSGT00390000008099
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00390000003224.B	ENSGT00390000013208 #7	ENSGT00940000153588.a.b #8	ENSGT00940000159122 #9	ENSGT01030000234549.a.a.a.a.b #11	ENSGT01010000222360.E.c #10	ENSGT00940000161477 #12	ENSGT00940000162027 #13	ENSGT00390000014201 #14	ENSGT00940000154156.d #15	ENSGT00730000111591 #16	ENSGT00550000074976 #17	ENSGT00390000011772 #18	ENSGT00940000159260 #21	ENSGT00510000047270 #20	ENSGT00940000161709 #22	ENSGT00950000183157.b #23	ENSGT00940000156878 #24	ENSGT00940000153772.A #25	ENSGT00390000008140 #26	ENSGT01030000234648.a.b.a.a.b #27	ENSGT00390000018285	ENSGT01100000263518.B.b.b	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a	ENSGT01020000230364.a.a.b.b	ENSGT01020000230364.a.b	ENSGT00730000110895.b.a	ENSGT00940000156567	ENSGT00940000157073	ENSGT00390000008099
Naked mole-rat female	MODERN SPECIES	5	ENSHGLG00000003789 #7	FLNC (ENSHGLG00000007789) #8	CCDC136 (ENSHGLG00000010818) #9	ENSHGLG00000017204 #10	OPN1SW (ENSHGLG00000012102) #11	GARIN1B (ENSHGLG00000014946) #12	GARIN1A (ENSHGLG00000013393) #13	ENSHGLG00000045038 #14	ENSHGLG00000003834 #15	PRRT4 (ENSHGLG00000004653) #16	RBM28 (ENSHGLG00000005409) #17	LEP (ENSHGLG00000042168) #18	ENSHGLG00000042470 #19	SND1 (ENSHGLG00000003618) #20	LRRC4 (ENSHGLG00000004237) #21	PAX4 (ENSHGLG00000004644) #22	FSCN3 (ENSHGLG00000006438) #23	ARF5 (ENSHGLG00000007494) #24	GCC1 (ENSHGLG00000050471) #25	ZNF800 (ENSHGLG00000003680) #26	ENSHGLG00000047719 #27	ENSHGLG00000047566 #28	ENSHGLG00000008149 #29	ENSHGLG00000010416 #30	ENSHGLG00000032447 #31	ENSHGLG00000005704 #32	GSDME (ENSHGLG00000006934) #33	PALS2 (ENSHGLG00000009245) #34	ENSHGLG00000050185 #35	STK31 (ENSHGLG00000008474) #36	FAM221A (ENSHGLG00000015778) #37
Hystricomorpha_a	ANCESTRAL SPECIES	43	ENSGT00390000013208 #7	ENSGT00940000153588.a.b #8	ENSGT00940000159122 #9	ENSGT01030000234549.a.a.a.a.b #11	ENSGT01010000222360.E.c #10	ENSGT00940000161477 #12	ENSGT00940000162027 #13	ENSGT00940000169914	ENSGT00390000014201 #14	ENSGT00940000154156.d #15	ENSGT00730000111591 #16	ENSGT00550000074976 #17	ENSGT00390000011772 #18	ENSGT00940000159260 #21	ENSGT00510000047270 #20	ENSGT00940000161709 #22	ENSGT00950000183157.b #23	ENSGT00940000156878 #24	ENSGT00940000153772.A #25	ENSGT00390000008140 #26	ENSGT01030000234648.a.b.a.a.b #27	ENSGT00390000018285	ENSGT01100000263518.B.b.b	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a	ENSGT01020000230364.a.a.b.b	ENSGT01020000230364.a.b	ENSGT00730000110895.b.a	ENSGT00940000156567	ENSGT00940000157073	ENSGT00390000008099
Guinea pig	MODERN SPECIES	11	ATP6V1F (ENSCPOG00000040466) #7	FLNC (ENSCPOG00000001395) #8	CCDC136 (ENSCPOG00000007170) #9	OPN1SW (ENSCPOG00000010209) #11	CALU (ENSCPOG00000010201) #10	GARIN1B (ENSCPOG00000003688) #12	GARIN1A (ENSCPOG00000020934) #13	ENSCPOG00000037525	HILPDA (ENSCPOG00000037851) #14	IMPDH1 (ENSCPOG00000006264) #15	PRRT4 (ENSCPOG00000040639) #16	RBM28 (ENSCPOG00000006253) #17	LEP (ENSCPOG00000034742) #18	LRRC4 (ENSCPOG00000032605) #21	SND1 (ENSCPOG00000006251) #20	PAX4 (ENSCPOG00000006244) #22	FSCN3 (ENSCPOG00000005661) #23	ARF5 (ENSCPOG00000006239) #24	GCC1 (ENSCPOG00000038340) #25	ZNF800 (ENSCPOG00000007495) #26	ENSCPOG00000024031 #27	ENSCPOG00000036366 ##27	POT1 (ENSCPOG00000014166)	GPR37 (ENSCPOG00000014159)	TMEM229A (ENSCPOG00000039455)	SPAM1 (ENSCPOG00000001716)	HYAL4 (ENSCPOG00000013594)	ENSCPOG00000027329	WASL (ENSCPOG00000003284)	LMOD2 (ENSCPOG00000034650)	ASB15 (ENSCPOG00000025748)
Hystricomorpha_b	ANCESTRAL SPECIES	85	ENSGT00390000003224.B	ENSGT00390000013208 #7	ENSGT00940000153588.a.b #8	ENSGT00940000159122 #9	ENSGT01030000234549.a.a.a.a.b #11	ENSGT01010000222360.E.c #10	ENSGT00940000161477 #12	ENSGT00940000162027 #13	ENSGT00940000169914	ENSGT00940000154156.d #15	ENSGT00730000111591 #16	ENSGT00550000074976 #17	ENSGT00390000011772 #18	ENSGT00940000159260 #21	ENSGT00510000047270 #20	ENSGT00940000161709 #22	ENSGT00950000183157.b #23	ENSGT00940000156878 #24	ENSGT00940000153772.A #25	ENSGT00390000008140 #26	ENSGT01030000234648.a.b.a.a.b #27	ENSGT00390000018285	ENSGT01100000263518.B.b.b	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a	ENSGT01020000230364.a.a.b.b	ENSGT01020000230364.a.b	ENSGT00730000110895.b.a	ENSGT00940000156567	ENSGT00940000157073	ENSGT00390000008099
Degu	MODERN SPECIES	201	KCP (ENSODEG00000012598)	ATP6V1FNB (ENSODEG00000012220)	ATP6V1F (ENSODEG00000013471) #7	FLNC (ENSODEG00000012609) #8	ENSODEG00000013040 #9	OPN1SW (ENSODEG00000013213) #11	CALU (ENSODEG00000011897) #10	GARIN1B (ENSODEG00000011956) #12	GARIN1A (ENSODEG00000012901) #13	IMPDH1 (ENSODEG00000013707) #15	PRRT4 (ENSODEG00000013465) #16	ENSODEG00000013217 #17	LEP (ENSODEG00000012966) #18	LRRC4 (ENSODEG00000013567) #21	SND1 (ENSODEG00000011502) #20	PAX4 (ENSODEG00000015565) #22	FSCN3 (ENSODEG00000011950) #23	ARF5 (ENSODEG00000011800) #24	GCC1 (ENSODEG00000011696) #25	ZNF800 (ENSODEG00000012385) #26	GRM8 (ENSODEG00000012191) #27	ENSODEG00000011802	POT1 (ENSODEG00000011405)	GPR37 (ENSODEG00000011993)
Long-tailed chinchilla	MODERN SPECIES	186	ATP6V1FNB (ENSCLAG00000008131)	ATP6V1F (ENSCLAG00000007944) #7	FLNC (ENSCLAG00000004512) #8	ENSCLAG00000006490 #9	OPN1SW (ENSCLAG00000006304) #11	CALU (ENSCLAG00000005800) #10	GARIN1B (ENSCLAG00000005300) #12	GARIN1A (ENSCLAG00000005230) #13	ENSCLAG00000005074	IMPDH1 (ENSCLAG00000004262) #15	PRRT4 (ENSCLAG00000003937) #16	RBM28 (ENSCLAG00000003707) #17	LEP (ENSCLAG00000003590) #18	LRRC4 (ENSCLAG00000003547) #21	SND1 (ENSCLAG00000011796) #20	PAX4 (ENSCLAG00000008291) #22	FSCN3 (ENSCLAG00000008067) #23	ARF5 (ENSCLAG00000007930) #24	GCC1 (ENSCLAG00000007735) #25	ZNF800 (ENSCLAG00000007288) #26	GRM8 (ENSCLAG00000004841) #27	POT1 (ENSCLAG00000004448)	GPR37 (ENSCLAG00000004210)	SPAM1 (ENSCLAG00000004068)	HYAL4 (ENSCLAG00000004024)	ENSCLAG00000003732	WASL (ENSCLAG00000003691)	LMOD2 (ENSCLAG00000003580)	ASB15 (ENSCLAG00000007102)	NDUFA5 (ENSCLAG00000006860)	IQUB (ENSCLAG00000006424)
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00390000003224.B	ENSGT00390000013208 #7	ENSGT00940000153588.a.b #8	ENSGT00940000159122 #9	ENSGT01030000234549.a.a.a.a.b #11	ENSGT01010000222360.E.c #10	ENSGT00940000161477 #12	ENSGT00940000162027 #13	ENSGT00390000014201 #14	ENSGT00940000154156.d #15	ENSGT00730000111591 #16	ENSGT00550000074976 #17	ENSGT00390000011772 #18	ENSGT00940000159260 #21	ENSGT00510000047270 #20	ENSGT00940000161709 #22	ENSGT00950000183157.b #23	ENSGT00940000156878 #24	ENSGT00940000153772.A #25	ENSGT00390000008140 #26	ENSGT01030000234648.a.b.a.a.b #27	ENSGT00390000018285	ENSGT01100000263518.B.b.b	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a	ENSGT01020000230364.a.a.b.b	ENSGT01020000230364.a.b	ENSGT00730000110895.b.a	ENSGT00940000156567	ENSGT00940000157073	ENSGT00390000008099
Marmotini	ANCESTRAL SPECIES	35	ENSGT00390000013208 #7	ENSGT00940000153588.a.b #8	ENSGT00940000159122 #9	ENSGT01030000234549.a.a.a.a.b #11	ENSGT01010000222360.E.c #10	ENSGT00940000161477 #12	ENSGT00940000162027 #13	ENSGT00390000014201 #14	ENSGT00940000154156.d #15	ENSGT00730000111591 #16	ENSGT00550000074976 #17	ENSGT00390000011772 #18	ENSGT00940000159260 #21	ENSGT00510000047270 #20	ENSGT00940000153314.a.a	ENSGT00940000161709 #22	ENSGT00950000183157.b #23	ENSGT00940000156878 #24	ENSGT00940000153772.A #25	ENSGT00390000008140 #26	ENSGT01030000234648.a.b.a.a.b #27	ENSGT00390000018285	ENSGT01100000263518.B.b.b	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a	ENSGT01020000230364.a.a.b.b	ENSGT01020000230364.a.b	ENSGT00730000110895.b.a	ENSGT00940000156567	ENSGT00940000157073	ENSGT00390000008099
Marmotini_b	ANCESTRAL SPECIES	65	ENSGT00390000013208 #7	ENSGT00940000153588.a.b #8	ENSGT00940000159122 #9	ENSGT01030000234549.a.a.a.a.b #11	ENSGT01010000222360.E.c #10	ENSGT00940000161477 #12	ENSGT00940000162027 #13	ENSGT00390000014201 #14	ENSGT00940000154156.d #15	ENSGT00730000111591 #16	ENSGT00550000074976 #17	ENSGT00390000011772 #18	ENSGT00940000159260 #21	ENSGT00510000047270 #20	ENSGT00940000153314.a.a	ENSGT00940000161709 #22	ENSGT00950000183157.b #23	ENSGT00940000156878 #24	ENSGT00940000153772.A #25	ENSGT00390000008140 #26	ENSGT01030000234648.a.b.a.a.b #27
Arctic ground squirrel	MODERN SPECIES	501	ATP6V1F (ENSUPAG00010002394) #7	FLNC (ENSUPAG00010002251) #8	CCDC136 (ENSUPAG00010002072) #9	OPN1SW (ENSUPAG00010002051) #11	CALU (ENSUPAG00010002015) #10	GARIN1B (ENSUPAG00010001974) #12	GARIN1A (ENSUPAG00010001961) #13	HILPDA (ENSUPAG00010001958) #14	IMPDH1 (ENSUPAG00010001856) #15	PRRT4 (ENSUPAG00010001841) #16	RBM28 (ENSUPAG00010001783) #17	LEP (ENSUPAG00010001772) #18	LRRC4 (ENSUPAG00010001766) #21	SND1 (ENSUPAG00010001727) #20	ENSUPAG00010001679	PAX4 (ENSUPAG00010001638) #22	FSCN3 (ENSUPAG00010001614) #23	ARF5 (ENSUPAG00010001595) #24	GCC1 (ENSUPAG00010001589) #25	ENSUPAG00010001572
Squirrel	MODERN SPECIES	79	ATP6V1FNB (ENSSTOG00000024361)	ATP6V1F (ENSSTOG00000014368) #7	FLNC (ENSSTOG00000014349) #8	ENSSTOG00000014335 #9	OPN1SW (ENSSTOG00000026017) #11	CALU (ENSSTOG00000022028) #10	GARIN1B (ENSSTOG00000026261) #12	GARIN1A (ENSSTOG00000008506) #13	HILPDA (ENSSTOG00000029766) #14	IMPDH1 (ENSSTOG00000002177) #15	PRRT4 (ENSSTOG00000023582) #16	RBM28 (ENSSTOG00000002169) #17	LEP (ENSSTOG00000027970) #18	LRRC4 (ENSSTOG00000021081) #21	SND1 (ENSSTOG00000002140) #20	PAX4 (ENSSTOG00000002127) #22	FSCN3 (ENSSTOG00000002115) #23	ARF5 (ENSSTOG00000002104) #24	GCC1 (ENSSTOG00000002099) #25	ZNF800 (ENSSTOG00000023294) #26	GRM8 (ENSSTOG00000006490) #27	AGTR2 (ENSSTOG00000012524)	ENSSTOG00000007147	ENSSTOG00000029519	KLHL13 (ENSSTOG00000012035)	WDR44 (ENSSTOG00000007251)	DOCK11 (ENSSTOG00000007295)	IL13RA1 (ENSSTOG00000024422)	ENSSTOG00000022238	LONRF3 (ENSSTOG00000015024)	PGRMC1 (ENSSTOG00000024047)
Alpin marmot	MODERN SPECIES	22	FLNC (ENSMMMG00000016242) #8	CCDC136 (ENSMMMG00000015944) #9	OPN1SW (ENSMMMG00000015924) #11	CALU (ENSMMMG00000015910) #10	GARIN1B (ENSMMMG00000015890) #12	GARIN1A (ENSMMMG00000015879) #13	HILPDA (ENSMMMG00000015877) #14	IMPDH1 (ENSMMMG00000015789) #15	PRRT4 (ENSMMMG00000015777) #16	RBM28 (ENSMMMG00000015736) #17	LEP (ENSMMMG00000015724) #18	ENSMMMG00000015714	LRRC4 (ENSMMMG00000015704) #21	SND1 (ENSMMMG00000015627) #20	ENSMMMG00000015616	PAX4 (ENSMMMG00000015595) #22	FSCN3 (ENSMMMG00000015585) #23	ARF5 (ENSMMMG00000015574) #24	GCC1 (ENSMMMG00000015571) #25	ZNF800 (ENSMMMG00000015549) #26	GRM8 (ENSMMMG00000015527) #27	POT1 (ENSMMMG00000015400)	GPR37 (ENSMMMG00000015396)	SPAM1 (ENSMMMG00000015253)	HYAL4 (ENSMMMG00000015235)	ENSMMMG00000015187	WASL (ENSMMMG00000015176)	LMOD2 (ENSMMMG00000015170)	ASB15 (ENSMMMG00000015148)	NDUFA5 (ENSMMMG00000015124)	IQUB (ENSMMMG00000015110)
Eurasian red squirrel	MODERN SPECIES	17	FLNC (ENSSVLG00005006076) #8	CCDC136 (ENSSVLG00005006165) #9	OPN1SW (ENSSVLG00005006222) #11	ENSSVLG00005006280 #10	GARIN1B (ENSSVLG00005006383) #12	GARIN1A (ENSSVLG00005006434) #13	HILPDA (ENSSVLG00005006462) #14	ENSSVLG00005006479	IMPDH1 (ENSSVLG00005006574) #15	PRRT4 (ENSSVLG00005006756) #16	RBM28 (ENSSVLG00005006856) #17	LEP (ENSSVLG00005006935) #18	SND1 (ENSSVLG00005006972) #20	LRRC4 (ENSSVLG00005007018) #21	ENSSVLG00005007031	PAX4 (ENSSVLG00005007068) #22	FSCN3 (ENSSVLG00005007223) #23	ARF5 (ENSSVLG00005007263) #24	GCC1 (ENSSVLG00005007286) #25	ZNF800 (ENSSVLG00005007309) #26	GRM8 (ENSSVLG00005007347) #27	TEAD2 (ENSSVLG00005007471)	POT1 (ENSSVLG00005007551)	GPR37 (ENSSVLG00005007725)	ENSSVLG00005007773	TMEM229A (ENSSVLG00005007852)	SPAM1 (ENSSVLG00005007942)	HYAL4 (ENSSVLG00005008218)	ENSSVLG00005008265	WASL (ENSSVLG00005008370)	LMOD2 (ENSSVLG00005008381)