Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00390000003224.B #7	ENSGT00390000013208 #8	ENSGT00940000153588.a.b #9	ENSGT00940000159122 #10	ENSGT01030000234549.a.a.a.a.b #11	ENSGT01010000222360.E.c #12	ENSGT00940000161477 #13	ENSGT00940000162027 #14	ENSGT00390000014201	ENSGT00940000154156.d #16	ENSGT00730000111591 #17	ENSGT00550000074976 #18	ENSGT00390000011772 #19	ENSGT00940000159260 #20	ENSGT00510000047270 #21	ENSGT00940000161709 #22	ENSGT00950000183157.b #23	ENSGT00940000156878 #24	ENSGT00940000153772.A #25	ENSGT00390000008140 #26	ENSGT01030000234648.a.b.a.a.b #27	ENSGT00390000018285 #28	ENSGT01100000263518.B.b.b #29	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a #30	ENSGT01020000230364.a.a.b.b #31	ENSGT01020000230364.a.b #32	ENSGT00730000110895.b.a #33	ENSGT00940000156567 #34	ENSGT00940000157073 #35	ENSGT00390000008099 #36
Hystricomorpha_a	ANCESTRAL SPECIES	43	ENSGT00390000013208 #8	ENSGT00940000153588.a.b #9	ENSGT00940000159122 #10	ENSGT01030000234549.a.a.a.a.b #11	ENSGT01010000222360.E.c #12	ENSGT00940000161477 #13	ENSGT00940000162027 #14	ENSGT00940000169914 #15	ENSGT00390000014201	ENSGT00940000154156.d #16	ENSGT00730000111591 #17	ENSGT00550000074976 #18	ENSGT00390000011772 #19	ENSGT00940000159260 #20	ENSGT00510000047270 #21	ENSGT00940000161709 #22	ENSGT00950000183157.b #23	ENSGT00940000156878 #24	ENSGT00940000153772.A #25	ENSGT00390000008140 #26	ENSGT01030000234648.a.b.a.a.b #27	ENSGT00390000018285 #28	ENSGT01100000263518.B.b.b #29	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a #30	ENSGT01020000230364.a.a.b.b #31	ENSGT01020000230364.a.b #32	ENSGT00730000110895.b.a #33	ENSGT00940000156567 #34	ENSGT00940000157073 #35	ENSGT00390000008099 #36
Hystricomorpha_b	ANCESTRAL SPECIES	85	ENSGT00390000003224.B #7	ENSGT00390000013208 #8	ENSGT00940000153588.a.b #9	ENSGT00940000159122 #10	ENSGT01030000234549.a.a.a.a.b #11	ENSGT01010000222360.E.c #12	ENSGT00940000161477 #13	ENSGT00940000162027 #14	ENSGT00940000169914 #15	ENSGT00940000154156.d #16	ENSGT00730000111591 #17	ENSGT00550000074976 #18	ENSGT00390000011772 #19	ENSGT00940000159260 #20	ENSGT00510000047270 #21	ENSGT00940000161709 #22	ENSGT00950000183157.b #23	ENSGT00940000156878 #24	ENSGT00940000153772.A #25	ENSGT00390000008140 #26	ENSGT01030000234648.a.b.a.a.b #27	ENSGT00390000018285 #28	ENSGT01100000263518.B.b.b #29	ENSGT00390000010899.a.b.b.b	ENSGT01020000230364.a.a.b.a #30	ENSGT01020000230364.a.a.b.b #31	ENSGT01020000230364.a.b #32	ENSGT00730000110895.b.a #33	ENSGT00940000156567 #34	ENSGT00940000157073 #35	ENSGT00390000008099 #36
Long-tailed chinchilla	MODERN SPECIES	186	ATP6V1FNB (ENSCLAG00000008131) #7	ATP6V1F (ENSCLAG00000007944) #8	FLNC (ENSCLAG00000004512) #9	ENSCLAG00000006490 #10	OPN1SW (ENSCLAG00000006304) #11	CALU (ENSCLAG00000005800) #12	GARIN1B (ENSCLAG00000005300) #13	GARIN1A (ENSCLAG00000005230) #14	ENSCLAG00000005074 #15	IMPDH1 (ENSCLAG00000004262) #16	PRRT4 (ENSCLAG00000003937) #17	RBM28 (ENSCLAG00000003707) #18	LEP (ENSCLAG00000003590) #19	LRRC4 (ENSCLAG00000003547) #20	SND1 (ENSCLAG00000011796) #21	PAX4 (ENSCLAG00000008291) #22	FSCN3 (ENSCLAG00000008067) #23	ARF5 (ENSCLAG00000007930) #24	GCC1 (ENSCLAG00000007735) #25	ZNF800 (ENSCLAG00000007288) #26	GRM8 (ENSCLAG00000004841) #27	POT1 (ENSCLAG00000004448) #28	GPR37 (ENSCLAG00000004210) #29	SPAM1 (ENSCLAG00000004068) #30	HYAL4 (ENSCLAG00000004024) #31	ENSCLAG00000003732 #32	WASL (ENSCLAG00000003691) #33	LMOD2 (ENSCLAG00000003580) #34	ASB15 (ENSCLAG00000007102) #35	NDUFA5 (ENSCLAG00000006860) #36	IQUB (ENSCLAG00000006424) #37
Degu	MODERN SPECIES	201	KCP (ENSODEG00000012598)	ATP6V1FNB (ENSODEG00000012220) #7	ATP6V1F (ENSODEG00000013471) #8	FLNC (ENSODEG00000012609) #9	ENSODEG00000013040 #10	OPN1SW (ENSODEG00000013213) #11	CALU (ENSODEG00000011897) #12	GARIN1B (ENSODEG00000011956) #13	GARIN1A (ENSODEG00000012901) #14	IMPDH1 (ENSODEG00000013707) #16	PRRT4 (ENSODEG00000013465) #17	ENSODEG00000013217 #18	LEP (ENSODEG00000012966) #19	LRRC4 (ENSODEG00000013567) #20	SND1 (ENSODEG00000011502) #21	PAX4 (ENSODEG00000015565) #22	FSCN3 (ENSODEG00000011950) #23	ARF5 (ENSODEG00000011800) #24	GCC1 (ENSODEG00000011696) #25	ZNF800 (ENSODEG00000012385) #26	GRM8 (ENSODEG00000012191) #27	ENSODEG00000011802	POT1 (ENSODEG00000011405) #28	GPR37 (ENSODEG00000011993) #29
Guinea pig	MODERN SPECIES	11	ATP6V1F (ENSCPOG00000040466) #8	FLNC (ENSCPOG00000001395) #9	CCDC136 (ENSCPOG00000007170) #10	OPN1SW (ENSCPOG00000010209) #11	CALU (ENSCPOG00000010201) #12	GARIN1B (ENSCPOG00000003688) #13	GARIN1A (ENSCPOG00000020934) #14	ENSCPOG00000037525	HILPDA (ENSCPOG00000037851)	IMPDH1 (ENSCPOG00000006264) #16	PRRT4 (ENSCPOG00000040639) #17	RBM28 (ENSCPOG00000006253) #18	LEP (ENSCPOG00000034742) #19	LRRC4 (ENSCPOG00000032605) #20	SND1 (ENSCPOG00000006251) #21	PAX4 (ENSCPOG00000006244) #22	FSCN3 (ENSCPOG00000005661) #23	ARF5 (ENSCPOG00000006239) #24	GCC1 (ENSCPOG00000038340) #25	ZNF800 (ENSCPOG00000007495) #26	ENSCPOG00000024031 #27	ENSCPOG00000036366 ##27	POT1 (ENSCPOG00000014166) #28	GPR37 (ENSCPOG00000014159) #29	TMEM229A (ENSCPOG00000039455)	SPAM1 (ENSCPOG00000001716) #30	HYAL4 (ENSCPOG00000013594) #31	ENSCPOG00000027329 #32	WASL (ENSCPOG00000003284) #33	LMOD2 (ENSCPOG00000034650) #34	ASB15 (ENSCPOG00000025748) #35
Naked mole-rat female	MODERN SPECIES	5	ENSHGLG00000003789 #8	FLNC (ENSHGLG00000007789) #9	CCDC136 (ENSHGLG00000010818) #10	ENSHGLG00000017204 #12	OPN1SW (ENSHGLG00000012102) #11	GARIN1B (ENSHGLG00000014946) #13	GARIN1A (ENSHGLG00000013393) #14	ENSHGLG00000045038	ENSHGLG00000003834 #16	PRRT4 (ENSHGLG00000004653) #17	RBM28 (ENSHGLG00000005409) #18	LEP (ENSHGLG00000042168) #19	ENSHGLG00000042470	SND1 (ENSHGLG00000003618) #21	LRRC4 (ENSHGLG00000004237) #20	PAX4 (ENSHGLG00000004644) #22	FSCN3 (ENSHGLG00000006438) #23	ARF5 (ENSHGLG00000007494) #24	GCC1 (ENSHGLG00000050471) #25	ZNF800 (ENSHGLG00000003680) #26	ENSHGLG00000047719 #27	ENSHGLG00000047566	ENSHGLG00000008149	ENSHGLG00000010416	ENSHGLG00000032447	ENSHGLG00000005704	GSDME (ENSHGLG00000006934)	PALS2 (ENSHGLG00000009245)	ENSHGLG00000050185	STK31 (ENSHGLG00000008474)	FAM221A (ENSHGLG00000015778)