Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b #22
Gnathostomata	ANCESTRAL SPECIES	617													ENSGT00940000161833	ENSGT00940000165452.a	ENSGT00940000157556 #20	ENSGT00950000183082.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26
Euteleostomi	DUPLICATION
Euteleostomi	ANCESTRAL SPECIES	429											ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000165452.a	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27
Sarcopterygii	ANCESTRAL SPECIES	157						ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000177979	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000161036.B	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049872 #35	ENSGT00390000010434.b #36
Tetrapoda	ANCESTRAL SPECIES	39						ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000177979	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000161036.B	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Amniota	ANCESTRAL SPECIES	10				ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000161036.B	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Mammalia	ANCESTRAL SPECIES	14	ENSGT00740000115593	ENSGT00940000155525	ENSGT00900000142007	ENSGT00940000158658	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000161036.B	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT01000000220768	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36
Theria	ANCESTRAL SPECIES	21							ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT01000000220768	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Eutheria	ANCESTRAL SPECIES	13	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Boreoeutheria	ANCESTRAL SPECIES	16	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Euarchontoglires	ANCESTRAL SPECIES	16	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Primates	ANCESTRAL SPECIES	16	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Haplorrhini	ANCESTRAL SPECIES	11	ENSGT00940000160584	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Simiiformes	ANCESTRAL SPECIES	17	ENSGT00940000160584	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Platyrrhini	ANCESTRAL SPECIES	14	ENSGT00940000160584	ENSGT00940000154908.e	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Cebidae	ANCESTRAL SPECIES	17	ENSGT00940000160584	ENSGT00940000154908.e	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a.ob ##26	ENSGT00390000004874.a.a.nb.b ##26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Marmoset	MODERN SPECIES	3	BLOC1S2 (ENSCJAG00000017269) #7	CWF19L1 (ENSCJAG00000017176) #8	CHUK (ENSCJAG00000017244) #9	ERLIN1 (ENSCJAG00000017211) #10	ENSCJAG00000072049 #11	CPN1 (ENSCJAG00000017197) #12	DNMBP (ENSCJAG00000017162) #13	ENSCJAG00000085790 #14	ABCC2 (ENSCJAG00000017142) #15	CUTC (ENSCJAG00000017121) #16	COX15 (ENSCJAG00000017107) #17	ENTPD7 (ENSCJAG00000017079) #18	SLC25A28 (ENSCJAG00000042303) #19	NKX2-3 (ENSCJAG00000017049) #20	ENSCJAG00000086661 #21	GOT1 (ENSCJAG00000017037) #22	CNNM1 (ENSCJAG00000016989) #23	ENSCJAG00000083271 #24	ENSCJAG00000084878 #25	HPSE2 (ENSCJAG00000016974) #26	HPS1 (ENSCJAG00000016915) #27	LOXL4 (ENSCJAG00000016875) #28	R3HCC1L (ENSCJAG00000016839) #29	CRTAC1 (ENSCJAG00000016821) #30	ENSCJAG00000087255 #31	SFRP5 (ENSCJAG00000016808) #32	ZFYVE27 (ENSCJAG00000016783) #33	MARVELD1 (ENSCJAG00000016782) #34	AVPI1 (ENSCJAG00000062664) #35	PI4K2A (ENSCJAG00000016755) #36	MORN4 (ENSCJAG00000016744) #37
Cebidae_a	ANCESTRAL SPECIES	13	ENSGT00940000160584	ENSGT00940000154908.e	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a.ob ##26	ENSGT00390000004874.a.a.nb.b ##26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00730000111173 #37	ENSGT00390000010434.b #36
Bolivian squirrel monkey	MODERN SPECIES	47	ENSSBOG00000026797	BLOC1S2 (ENSSBOG00000020521) #7	CWF19L1 (ENSSBOG00000027396) #8	CHUK (ENSSBOG00000024074) #9	ERLIN1 (ENSSBOG00000033053) #10	ENSSBOG00000022350	CPN1 (ENSSBOG00000024485) #12	DNMBP (ENSSBOG00000021393) #13	ABCC2 (ENSSBOG00000034924) #15	CUTC (ENSSBOG00000029115) #16	COX15 (ENSSBOG00000020356) #17	ENTPD7 (ENSSBOG00000029450) #18	ENSSBOG00000029982	SLC25A28 (ENSSBOG00000024135) #19	NKX2-3 (ENSSBOG00000029445) #20	GOT1 (ENSSBOG00000029409) #22	CNNM1 (ENSSBOG00000023360) #23	HPSE2 (ENSSBOG00000035316) ##26	ENSSBOG00000025135	HPS1 (ENSSBOG00000001543) #27	PYROXD2 (ENSSBOG00000029428)	LOXL4 (ENSSBOG00000029353) #28	R3HCC1L (ENSSBOG00000032433) #29	CRTAC1 (ENSSBOG00000028883) #30	GOLGA7B (ENSSBOG00000028559) #31	SFRP5 (ENSSBOG00000014737) #32	ZFYVE27 (ENSSBOG00000019948) #33	PI4K2A (ENSSBOG00000034802) #36	MORN4 (ENSSBOG00000033451) #37	ANKRD2 (ENSSBOG00000030371)	UBTD1 (ENSSBOG00000027361)
Capuchin	MODERN SPECIES	71	WNT8B (ENSCCAG00000027693)	SCD (ENSCCAG00000031776)	PKD2L1 (ENSCCAG00000033020)	ENSCCAG00000027065 #7	CWF19L1 (ENSCCAG00000031321) #8	CHUK (ENSCCAG00000033466) #9	ERLIN1 (ENSCCAG00000036463) #10	CPN1 (ENSCCAG00000031716) #12	DNMBP (ENSCCAG00000036319) #13	ABCC2 (ENSCCAG00000037977) #15	CUTC (ENSCCAG00000034368) #16	COX15 (ENSCCAG00000013919) #17	ENTPD7 (ENSCCAG00000031589) #18	SLC25A28 (ENSCCAG00000022364) #19	NKX2-3 (ENSCCAG00000028510) #20	GOT1 (ENSCCAG00000036234) #22	CNNM1 (ENSCCAG00000037324) #23	ENSCCAG00000020087	ENSCCAG00000023659 #26	CAMK2A (ENSCCAG00000029738)	SLC6A7 (ENSCCAG00000033881)	CDX1 (ENSCCAG00000029914)	PDGFRB (ENSCCAG00000031575)	ENSCCAG00000026641	CSF1R (ENSCCAG00000033803)	HMGXB3 (ENSCCAG00000023989)	ENSCCAG00000030622	SLC26A2 (ENSCCAG00000020161)	PDE6A (ENSCCAG00000037978)	PPARGC1B (ENSCCAG00000026909)	ARHGEF37 (ENSCCAG00000035607) ##13
Mas night monkey	MODERN SPECIES	658	ENSANAG00000015086	ENSANAG00000004992	PKD2L1 (ENSANAG00000034186)	BLOC1S2 (ENSANAG00000020045) #7	CWF19L1 (ENSANAG00000023190) #8	CHUK (ENSANAG00000038072) #9	ERLIN1 (ENSANAG00000022217) #10	CPN1 (ENSANAG00000025971) #12	DNMBP (ENSANAG00000026014) #13	ABCC2 (ENSANAG00000021520) #15	CUTC (ENSANAG00000027988) #16	COX15 (ENSANAG00000036238) #17	ENTPD7 (ENSANAG00000033075) #18	SLC25A28 (ENSANAG00000032477) #19	NKX2-3 (ENSANAG00000021481) #20	GOT1 (ENSANAG00000000029) #22	CNNM1 (ENSANAG00000021328) #23	ENSANAG00000003679	ENSANAG00000037434	HPSE2 (ENSANAG00000031117) #26	HPS1 (ENSANAG00000033853) #27	PYROXD2 (ENSANAG00000023225)	LOXL4 (ENSANAG00000028977) #28	R3HCC1L (ENSANAG00000035504) #29	CRTAC1 (ENSANAG00000035892) #30	GOLGA7B (ENSANAG00000026383) #31	SFRP5 (ENSANAG00000020345) #32	ZFYVE27 (ENSANAG00000038112) #33	MARVELD1 (ENSANAG00000031120) #34	AVPI1 (ENSANAG00000029881) #35	MORN4 (ENSANAG00000023217) #37
Catarrhini	ANCESTRAL SPECIES	18	ENSGT00940000160584	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298.c #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00910000147157	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Hominoidea	ANCESTRAL SPECIES	11	ENSGT00940000160584	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298.c #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00910000147157	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Hominidae	ANCESTRAL SPECIES	13	ENSGT00940000160584	ENSGT00940000154908.j	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298.c #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00910000147157	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	17	ENSGT00940000160584	ENSGT00940000154908.j	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298.c #27	ENSGT00910000147501	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00910000147157	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36
Gorilla	MODERN SPECIES	1	WNT8B (ENSGGOG00000014634)	SCD (ENSGGOG00000001098)	PKD2L1 (ENSGGOG00000001841)	BLOC1S2 (ENSGGOG00000025362) #7	ENSGGOG00000005525	ENSGGOG00000008996 #9	ERLIN1 (ENSGGOG00000010561) #10	CPN1 (ENSGGOG00000014771) #12	DNMBP (ENSGGOG00000016481) #13	ABCC2 (ENSGGOG00000002275) #15	CUTC (ENSGGOG00000043674) #16	COX15 (ENSGGOG00000010577) #17	ENTPD7 (ENSGGOG00000014030) #18	SLC25A28 (ENSGGOG00000000150) #19	NKX2-3 (ENSGGOG00000013605) #20	GOT1 (ENSGGOG00000002550) #22	CNNM1 (ENSGGOG00000002546) #23	ENSGGOG00000043172	ENSGGOG00000037859	HPSE2 (ENSGGOG00000013772) #26	HPS1 (ENSGGOG00000002508) #27	ENSGGOG00000043397	PYROXD2 (ENSGGOG00000002504)	LOXL4 (ENSGGOG00000004798) #28	R3HCC1L (ENSGGOG00000004792) #29	ENSGGOG00000041605	CRTAC1 (ENSGGOG00000016011) #30	GOLGA7B (ENSGGOG00000016005) #31	SFRP5 (ENSGGOG00000012574) #32	ZFYVE27 (ENSGGOG00000024663) #33	MARVELD1 (ENSGGOG00000027335) #34
Homo/Pan group	ANCESTRAL SPECIES	18	ENSGT00940000160584	ENSGT00940000154908.j	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298.c #27	ENSGT00910000147501	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00910000147157	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36
Pan	ANCESTRAL SPECIES	16	ENSGT00940000160584	ENSGT00940000154908.j	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00940000154714.v.e.a	ENSGT00390000004874.a.a #26	ENSGT00390000015298.c #27	ENSGT00910000147501	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00910000147157	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35
Chimpanzee	MODERN SPECIES	1	WNT8B (ENSPTRG00000002849)	SCD (ENSPTRG00000002847)	PKD2L1 (ENSPTRG00000002845)	BLOC1S2 (ENSPTRG00000038697) #7	CWF19L1 (ENSPTRG00000002843) #8	CHUK (ENSPTRG00000033948) #9	ERLIN1 (ENSPTRG00000002841) #10	CPN1 (ENSPTRG00000045585) #12	DNMBP (ENSPTRG00000049744) #13	ABCC2 (ENSPTRG00000049872) #15	CUTC (ENSPTRG00000002836) #16	COX15 (ENSPTRG00000002835) #17	ENTPD7 (ENSPTRG00000002832) #18	SLC25A28 (ENSPTRG00000002831) #19	NKX2-3 (ENSPTRG00000002830) #20	GOT1 (ENSPTRG00000002829) #22	CNNM1 (ENSPTRG00000002828) #23	ENSPTRG00000050968	HPSE2 (ENSPTRG00000002826) #26	HPS1 (ENSPTRG00000002825) #27	ENSPTRG00000045214	PYROXD2 (ENSPTRG00000002824)	LOXL4 (ENSPTRG00000002823) #28	R3HCC1L (ENSPTRG00000002822) #29	ENSPTRG00000042728	CRTAC1 (ENSPTRG00000002821) #30	GOLGA7B (ENSPTRG00000045507) #31	SFRP5 (ENSPTRG00000045244) #32	ZFYVE27 (ENSPTRG00000002818) #33	MARVELD1 (ENSPTRG00000051550) #34	AVPI1 (ENSPTRG00000002816) #35
Bonobo	MODERN SPECIES	1	WNT8B (ENSPPAG00000039871)	SCD (ENSPPAG00000029861)	PKD2L1 (ENSPPAG00000027774)	BLOC1S2 (ENSPPAG00000043419) #7	CWF19L1 (ENSPPAG00000031948) #8	CHUK (ENSPPAG00000037851) #9	ERLIN1 (ENSPPAG00000035564) #10	CPN1 (ENSPPAG00000043340) #12	DNMBP (ENSPPAG00000031406) #13	ABCC2 (ENSPPAG00000040849) #15	CUTC (ENSPPAG00000033196) #16	COX15 (ENSPPAG00000002116) #17	ENTPD7 (ENSPPAG00000035846) #18	SLC25A28 (ENSPPAG00000037976) #19	ENSPPAG00000035777 #20	GOT1 (ENSPPAG00000042571) #22	CNNM1 (ENSPPAG00000024282) #23	ENSPPAG00000030090	HPSE2 (ENSPPAG00000030241) #26	HPS1 (ENSPPAG00000033115) #27	ENSPPAG00000037622	PYROXD2 (ENSPPAG00000034734)	LOXL4 (ENSPPAG00000030338) #28	R3HCC1L (ENSPPAG00000039950) #29	ENSPPAG00000031192	CRTAC1 (ENSPPAG00000042754) #30	GOLGA7B (ENSPPAG00000040315) #31	SFRP5 (ENSPPAG00000031585) #32	ZFYVE27 (ENSPPAG00000029291) #33	AVPI1 (ENSPPAG00000033222) #35	ENSPPAG00000030161 #37
Human	MODERN SPECIES	1	WNT8B (ENSG00000075290)	SCD (ENSG00000099194)	PKD2L1 (ENSG00000107593)	BLOC1S2 (ENSG00000196072) #7	CWF19L1 (ENSG00000095485) #8	CHUK (ENSG00000213341) #9	ERLIN1 (ENSG00000107566) #10	CPN1 (ENSG00000120054) #12	DNMBP (ENSG00000107554) #13	ABCC2 (ENSG00000023839) #15	COX15 (ENSG00000014919) #17	CUTC (ENSG00000119929) #16	ENTPD7 (ENSG00000198018) #18	SLC25A28 (ENSG00000155287) #19	NKX2-3 (ENSG00000119919) #20	GOT1 (ENSG00000120053) #22	CNNM1 (ENSG00000119946) #23	HPSE2 (ENSG00000172987) #26	HPS1 (ENSG00000107521) #27	PYROXD2 (ENSG00000119943)	LOXL4 (ENSG00000138131) #28	R3HCC1L (ENSG00000166024) #29	CRTAC1 (ENSG00000095713) #30	GOLGA7B (ENSG00000155265) #31	SFRP5 (ENSG00000120057) #32	ZFYVE27 (ENSG00000155256) #33	MARVELD1 (ENSG00000155254) #34	AVPI1 (ENSG00000119986) #35	PI4K2A (ENSG00000155252) #36	MORN4 (ENSG00000171160) #37	C10orf62 (ENSG00000203942)
Orangutan	MODERN SPECIES	1	WNT8B (ENSPPYG00000002568)	SCD (ENSPPYG00000002566)	PKD2L1 (ENSPPYG00000002565)	BLOC1S2 (ENSPPYG00000033265) #7	CWF19L1 (ENSPPYG00000002563) #8	CHUK (ENSPPYG00000002562) #9	ERLIN1 (ENSPPYG00000002560) #10	CPN1 (ENSPPYG00000029420) #12	DNMBP (ENSPPYG00000002559) #13	ABCC2 (ENSPPYG00000002558) #15	CUTC (ENSPPYG00000002557) #16	COX15 (ENSPPYG00000002556) #17	ENTPD7 (ENSPPYG00000002555) #18	SLC25A28 (ENSPPYG00000002554) #19	NKX2-3 (ENSPPYG00000002553) #20	GOT1 (ENSPPYG00000002552) #22	CNNM1 (ENSPPYG00000002551) #23	HPSE2 (ENSPPYG00000002550) #26	HPS1 (ENSPPYG00000002548) #27	PYROXD2 (ENSPPYG00000002547)	LOXL4 (ENSPPYG00000002546) #28	R3HCC1L (ENSPPYG00000002545) #29	CRTAC1 (ENSPPYG00000002543) #30	GOLGA7B (ENSPPYG00000002542) #31	SFRP5 (ENSPPYG00000034062) #32	ZFYVE27 (ENSPPYG00000002540) #33	MARVELD1 (ENSPPYG00000038510) #34	AVPI1 (ENSPPYG00000002539) #35	PI4K2A (ENSPPYG00000002538) #36	MORN4 (ENSPPYG00000031901) #37	HOGA1 (ENSPPYG00000002536)
Gibbon	MODERN SPECIES	18	WNT8B (ENSNLEG00000014764)	SCD (ENSNLEG00000014754)	PKD2L1 (ENSNLEG00000014748)	ENSNLEG00000033207	CWF19L1 (ENSNLEG00000014744) #8	CHUK (ENSNLEG00000014739) #9	ERLIN1 (ENSNLEG00000014724) #10	CPN1 (ENSNLEG00000014719) #12	DNMBP (ENSNLEG00000014697) #13	ABCC2 (ENSNLEG00000014650) #15	CUTC (ENSNLEG00000033562) #16	COX15 (ENSNLEG00000034626) #17	ENTPD7 (ENSNLEG00000014604) #18	ENSNLEG00000029449 #19	NKX2-3 (ENSNLEG00000027207) #20	GOT1 (ENSNLEG00000014567) #22	CNNM1 (ENSNLEG00000014538) #23	HPSE2 (ENSNLEG00000014531) #26	HPS1 (ENSNLEG00000014448) #27	PYROXD2 (ENSNLEG00000014414)	LOXL4 (ENSNLEG00000014379) #28	R3HCC1L (ENSNLEG00000014364) #29	CRTAC1 (ENSNLEG00000014328) #30	ENSNLEG00000035121	GOLGA7B (ENSNLEG00000014326) #31	SFRP5 (ENSNLEG00000014325) #32	ZFYVE27 (ENSNLEG00000014267) #33	AVPI1 (ENSNLEG00000014255) #35	PI4K2A (ENSNLEG00000014236) #36	MORN4 (ENSNLEG00000014248) #37	ANKRD2 (ENSNLEG00000014209)
Cercopithecidae	ANCESTRAL SPECIES	15	ENSGT00910000147853	ENSGT00940000154908.g	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298.c #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00910000147157	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Cercopithecinae	ANCESTRAL SPECIES	15	ENSGT00910000147853	ENSGT00940000154908.g	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298.c #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00910000147157	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Vervet Monkey	MODERN SPECIES	28	SCD (ENSCSAG00000005611)	PKD2L1 (ENSCSAG00000005629)	BLOC1S2 (ENSCSAG00000005639) #7	ENSCSAG00000018449	CWF19L1 (ENSCSAG00000005656) #8	CHUK (ENSCSAG00000005664) #9	ERLIN1 (ENSCSAG00000005667) #10	CPN1 (ENSCSAG00000005670) #12	DNMBP (ENSCSAG00000005674) #13	ABCC2 (ENSCSAG00000005698) #15	CUTC (ENSCSAG00000005709) #16	COX15 (ENSCSAG00000005712) #17	ENTPD7 (ENSCSAG00000005714) #18	SLC25A28 (ENSCSAG00000005717) #19	NKX2-3 (ENSCSAG00000005719) #20	GOT1 (ENSCSAG00000005721) #22	ENSCSAG00000005724 #23	ENSCSAG00000005727 #26	HPS1 (ENSCSAG00000005768) #27	PYROXD2 (ENSCSAG00000005790)	LOXL4 (ENSCSAG00000005801) #28	R3HCC1L (ENSCSAG00000005808) #29	CRTAC1 (ENSCSAG00000005817) #30	GOLGA7B (ENSCSAG00000005820) #31	SFRP5 (ENSCSAG00000005821) #32	ZFYVE27 (ENSCSAG00000005827) #33	MARVELD1 (ENSCSAG00000018448) #34	AVPI1 (ENSCSAG00000005840) #35	PI4K2A (ENSCSAG00000005842) #36	MORN4 (ENSCSAG00000005847) #37	HOGA1 (ENSCSAG00000005851)
Cercopithecinae_a	ANCESTRAL SPECIES	14	ENSGT00910000147853	ENSGT00940000154908.g	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000.o.a #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298.c #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00910000147157	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Macaca	ANCESTRAL SPECIES	11	ENSGT00910000147853	ENSGT00940000154908.g	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000.o.a #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298.c #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00910000147157	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Pig-tailed macaque	MODERN SPECIES	550	PKD2L1 (ENSMNEG00000030013)	BLOC1S2 (ENSMNEG00000034276) #7	ENSMNEG00000037598	ENSMNEG00000028051 #8	CHUK (ENSMNEG00000030565) #9	ERLIN1 (ENSMNEG00000041977) #10	CPN1 (ENSMNEG00000041677) #12	DNMBP (ENSMNEG00000039644) #13	ABCC2 (ENSMNEG00000038501) #15	CUTC (ENSMNEG00000031615) #16	COX15 (ENSMNEG00000041146) #17	ENTPD7 (ENSMNEG00000041235) #18	SLC25A28 (ENSMNEG00000027423) #19	ENSMNEG00000033853	NKX2-3 (ENSMNEG00000033053) #20	GOT1 (ENSMNEG00000030700) #22	CNNM1 (ENSMNEG00000033068) #23	HPSE2 (ENSMNEG00000028562) #26	HPS1 (ENSMNEG00000045397) #27	PYROXD2 (ENSMNEG00000040531)	LOXL4 (ENSMNEG00000030985) #28	R3HCC1L (ENSMNEG00000037890) #29	CRTAC1 (ENSMNEG00000035544) #30	ENSMNEG00000001433	GOLGA7B (ENSMNEG00000033947) #31	SFRP5 (ENSMNEG00000043178) #32	ZFYVE27 (ENSMNEG00000039230) #33	MARVELD1 (ENSMNEG00000009162) #34	AVPI1 (ENSMNEG00000032294) #35	PI4K2A (ENSMNEG00000020019) #36	MORN4 (ENSMNEG00000035432) #37
Macaca_a	ANCESTRAL SPECIES	13	ENSGT00940000154908.g	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000.o.a #8	ENSGT00950000182937.A.a #9	ENSGT00980000200803	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298.c #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00910000147157	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Crab-eating macaque	MODERN SPECIES	19	ENSMFAG00000040755	PKD2L1 (ENSMFAG00000030987)	ENSMFAG00000031202 #8	CHUK (ENSMFAG00000000426) #9	ENSMFAG00000062447	ERLIN1 (ENSMFAG00000042046) #10	ENSMFAG00000041054 #7	CPN1 (ENSMFAG00000007369) #12	DNMBP (ENSMFAG00000002036) #13	ABCC2 (ENSMFAG00000042907) #15	CUTC (ENSMFAG00000031857) #16	COX15 (ENSMFAG00000044256) #17	ENTPD7 (ENSMFAG00000038377) #18	SLC25A28 (ENSMFAG00000003371) #19	NKX2-3 (ENSMFAG00000044388) #20	GOT1 (ENSMFAG00000030230) #22	ENSMFAG00000046376 #23	HPSE2 (ENSMFAG00000036760) #26	HPS1 (ENSMFAG00000036329) #27	PYROXD2 (ENSMFAG00000034078)	LOXL4 (ENSMFAG00000036533) #28	R3HCC1L (ENSMFAG00000036084) #29	ENSMFAG00000060607	CRTAC1 (ENSMFAG00000007568) #30	GOLGA7B (ENSMFAG00000002194) #31	SFRP5 (ENSMFAG00000037089) #32	ZFYVE27 (ENSMFAG00000031815) #33	AVPI1 (ENSMFAG00000043548) #35	PI4K2A (ENSMFAG00000003191) #36	MORN4 (ENSMFAG00000000472) #37	HOGA1 (ENSMFAG00000061572)
Rhesus	MODERN SPECIES	19	CWF19L1 (ENSMMUG00000018472) #8	CHUK (ENSMMUG00000018476) #9	ENSMMUG00000064203	ERLIN1 (ENSMMUG00000018470) #10	BLOC1S2 (ENSMMUG00000061808) #7	CPN1 (ENSMMUG00000018755) #12	DNMBP (ENSMMUG00000023765) #13	ENSMMUG00000030508	ABCC2 (ENSMMUG00000023764) #15	CUTC (ENSMMUG00000061918) #16	COX15 (ENSMMUG00000023762) #17	ENTPD7 (ENSMMUG00000023761) #18	SLC25A28 (ENSMMUG00000023760) #19	NKX2-3 (ENSMMUG00000018270) #20	ENSMMUG00000056041	GOT1 (ENSMMUG00000010356) #22	CNNM1 (ENSMMUG00000010357) #23	ENSMMUG00000059304	HPSE2 (ENSMMUG00000020605) #26	HPS1 (ENSMMUG00000020604) #27	PYROXD2 (ENSMMUG00000020603)	LOXL4 (ENSMMUG00000051439) #28	R3HCC1L (ENSMMUG00000010281) #29	ENSMMUG00000052648	GOLGA7B (ENSMMUG00000056243) #31	CRTAC1 (ENSMMUG00000018154) #30	SFRP5 (ENSMMUG00000064002) #32	ZFYVE27 (ENSMMUG00000015503) #33	MARVELD1 (ENSMMUG00000064106) #34	AVPI1 (ENSMMUG00000052153) #35	MORN4 (ENSMMUG00000020034) #37
Cercopithecinae_b	ANCESTRAL SPECIES	14	ENSGT00940000160584	ENSGT00940000154908.g	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000.o.a #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298.c #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Olive baboon	MODERN SPECIES	2	SCD (ENSPANG00000050775)	PKD2L1 (ENSPANG00000021208)	BLOC1S2 (ENSPANG00000041274) #7	ENSPANG00000021205 #8	CHUK (ENSPANG00000021197) #9	ERLIN1 (ENSPANG00000021228) #10	CPN1 (ENSPANG00000039263) #12	DNMBP (ENSPANG00000021232) #13	ABCC2 (ENSPANG00000021230) #15	CUTC (ENSPANG00000021229) #16	COX15 (ENSPANG00000021260) #17	ENTPD7 (ENSPANG00000021258) #18	SLC25A28 (ENSPANG00000033003) #19	NKX2-3 (ENSPANG00000021255) #20	ENSPANG00000042572 ##21	GOT1 (ENSPANG00000021288) #22	CNNM1 (ENSPANG00000021286) #23	HPSE2 (ENSPANG00000021283) #26	HPS1 (ENSPANG00000021281) #27	LOXL4 (ENSPANG00000021302) #28	R3HCC1L (ENSPANG00000021301) #29	CRTAC1 (ENSPANG00000021299) #30	GOLGA7B (ENSPANG00000021297) #31	SFRP5 (ENSPANG00000021296) #32	ZFYVE27 (ENSPANG00000021295) #33	MARVELD1 (ENSPANG00000021294) #34	AVPI1 (ENSPANG00000021293) #35	PI4K2A (ENSPANG00000021292) #36	MORN4 (ENSPANG00000021290) #37	HOGA1 (ENSPANG00000040105)	ANKRD2 (ENSPANG00000021351)
Cercopithecinae_d	ANCESTRAL SPECIES	57	ENSGT00940000160584	ENSGT00940000154908.g	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000.o.a #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298.c #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00730000111173 #37	ENSGT00390000010434.b #36	ENSGT00940000153956.b
Drill	MODERN SPECIES	660	ENSMLEG00000038669	PKD2L1 (ENSMLEG00000033807)	BLOC1S2 (ENSMLEG00000044004) #7	CWF19L1 (ENSMLEG00000036355) #8	CHUK (ENSMLEG00000035776) #9	ERLIN1 (ENSMLEG00000029926) #10	CPN1 (ENSMLEG00000038257) #12	DNMBP (ENSMLEG00000043828) #13	ABCC2 (ENSMLEG00000037629) #15	CUTC (ENSMLEG00000043325) #16	COX15 (ENSMLEG00000030859) #17	ENTPD7 (ENSMLEG00000031087) #18	SLC25A28 (ENSMLEG00000034576) #19	NKX2-3 (ENSMLEG00000006314) #20	ENSMLEG00000014598	GOT1 (ENSMLEG00000028411) #22	CNNM1 (ENSMLEG00000038123) #23	ENSMLEG00000029234 #26
Sooty mangabey	MODERN SPECIES	598	WNT8B (ENSCATG00000037399)	ENSCATG00000034068	PKD2L1 (ENSCATG00000037422)	BLOC1S2 (ENSCATG00000033676) #7	ENSCATG00000043079 #8	CHUK (ENSCATG00000043885) #9	ERLIN1 (ENSCATG00000034416) #10	CPN1 (ENSCATG00000040918) #12	DNMBP (ENSCATG00000030424) #13	ABCC2 (ENSCATG00000028971) #15	CUTC (ENSCATG00000012209) #16	COX15 (ENSCATG00000043600) #17	ENTPD7 (ENSCATG00000001677) #18	SLC25A28 (ENSCATG00000018619) #19	NKX2-3 (ENSCATG00000037715) #20	GOT1 (ENSCATG00000036970) #22	CNNM1 (ENSCATG00000032684) #23	HPSE2 (ENSCATG00000035827) #26	HPS1 (ENSCATG00000035195) #27	PYROXD2 (ENSCATG00000038164)	LOXL4 (ENSCATG00000038999) #28	R3HCC1L (ENSCATG00000034502) #29	ENSCATG00000039731	CRTAC1 (ENSCATG00000033100) #30	GOLGA7B (ENSCATG00000039684) #31	SFRP5 (ENSCATG00000041752) #32	ZFYVE27 (ENSCATG00000039847) #33	MARVELD1 (ENSCATG00000010571) #34	AVPI1 (ENSCATG00000036178) #35	MORN4 (ENSCATG00000037202) #37	PI4K2A (ENSCATG00000036094) #36
Rhinopithecus	ANCESTRAL SPECIES	11	ENSGT00910000147853	ENSGT00940000154908.g	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298.c #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00730000111173 #37	ENSGT00390000010434.b #36	ENSGT00940000153956.b
Black snub-nosed monkey	MODERN SPECIES	78	ENSRBIG00000022602	SCD (ENSRBIG00000036699)	PKD2L1 (ENSRBIG00000019139)	BLOC1S2 (ENSRBIG00000039928) #7	CWF19L1 (ENSRBIG00000033458) #8	CHUK (ENSRBIG00000035878) #9	ERLIN1 (ENSRBIG00000040949) #10	CPN1 (ENSRBIG00000043396) #12	DNMBP (ENSRBIG00000033786) #13	ABCC2 (ENSRBIG00000036097) #15	CUTC (ENSRBIG00000006906) #16	COX15 (ENSRBIG00000038567) #17	ENTPD7 (ENSRBIG00000036449) #18	SLC25A28 (ENSRBIG00000041178) #19	NKX2-3 (ENSRBIG00000038776) #20	GOT1 (ENSRBIG00000020502) #22	CNNM1 (ENSRBIG00000003156) #23	HPSE2 (ENSRBIG00000038333) #26	HPS1 (ENSRBIG00000036336) #27	PYROXD2 (ENSRBIG00000029292)	LOXL4 (ENSRBIG00000029695) #28	R3HCC1L (ENSRBIG00000031918) #29	CRTAC1 (ENSRBIG00000032795) #30	GOLGA7B (ENSRBIG00000035613) #31	SFRP5 (ENSRBIG00000033947) #32	ZFYVE27 (ENSRBIG00000031505) #33	AVPI1 (ENSRBIG00000028956) #35	MORN4 (ENSRBIG00000017424) #37	PI4K2A (ENSRBIG00000037559) #36	ANKRD2 (ENSRBIG00000039282)	UBTD1 (ENSRBIG00000044391)
Golden snub-nosed monkey	MODERN SPECIES	3053	ENSRROG00000036106	ENSRROG00000039965	PKD2L1 (ENSRROG00000041606)	BLOC1S2 (ENSRROG00000044178) #7	CWF19L1 (ENSRROG00000043660) #8	CHUK (ENSRROG00000042382) #9	ERLIN1 (ENSRROG00000042519) #10	CPN1 (ENSRROG00000031375) #12	DNMBP (ENSRROG00000025406) #13	ABCC2 (ENSRROG00000042002) #15	CUTC (ENSRROG00000039972) #16	COX15 (ENSRROG00000035980) #17	ENTPD7 (ENSRROG00000038161) #18	SLC25A28 (ENSRROG00000029759) #19	NKX2-3 (ENSRROG00000031581) #20	GOT1 (ENSRROG00000045130) #22	CNNM1 (ENSRROG00000041964) #23
Tarsier	MODERN SPECIES	3606																GOT1 (ENSTSYG00000006005) #22	CNNM1 (ENSTSYG00000026483) #23
Strepsirrhini	ANCESTRAL SPECIES	11	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Lemuriformes	ANCESTRAL SPECIES	7	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Mouse lemur	MODERN SPECIES	6	SCD (ENSMICG00000044298)	PKD2L1 (ENSMICG00000015366)	BLOC1S2 (ENSMICG00000046700) #7	CWF19L1 (ENSMICG00000034162) #8	ENSMICG00000036445 #9	ERLIN1 (ENSMICG00000038590) #10	CYP2C23 (ENSMICG00000045388)	CPN1 (ENSMICG00000006739) #12	DNMBP (ENSMICG00000006721) #13	ABCC2 (ENSMICG00000006689) #15	CUTC (ENSMICG00000042705) #16	COX15 (ENSMICG00000010505) #17	ENTPD7 (ENSMICG00000010496) #18	SLC25A28 (ENSMICG00000010489) #19	NKX2-3 (ENSMICG00000002913) #20	GOT1 (ENSMICG00000010482) #22	CNNM1 (ENSMICG00000010474) #23	ENSMICG00000034050	HPSE2 (ENSMICG00000000214) #26	HPS1 (ENSMICG00000000212) #27	PYROXD2 (ENSMICG00000000210)	LOXL4 (ENSMICG00000000209) #28	R3HCC1L (ENSMICG00000000208) #29	CRTAC1 (ENSMICG00000000201) #30	GOLGA7B (ENSMICG00000000199) #31	SFRP5 (ENSMICG00000044070) #32	ZFYVE27 (ENSMICG00000000197) #33	AVPI1 (ENSMICG00000030042) #35	MORN4 (ENSMICG00000047547) #37	C10orf62 (ENSMICG00000007711)	PI4K2A (ENSMICG00000007703) #36
Lemuriformes_a	ANCESTRAL SPECIES	21	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Coquerels sifaka	MODERN SPECIES	870	WNT8B (ENSPCOG00000027043)	SCD (ENSPCOG00000026946)	PKD2L1 (ENSPCOG00000001148)	BLOC1S2 (ENSPCOG00000024329) #7	CWF19L1 (ENSPCOG00000019363) #8	CHUK (ENSPCOG00000027527) #9	ERLIN1 (ENSPCOG00000018487) #10	CPN1 (ENSPCOG00000020726) #12	DNMBP (ENSPCOG00000025825) #13	ABCC2 (ENSPCOG00000025440) #15	CUTC (ENSPCOG00000002916) #16	COX15 (ENSPCOG00000013672) #17	ENTPD7 (ENSPCOG00000018900) #18	SLC25A28 (ENSPCOG00000014616) #19	NKX2-3 (ENSPCOG00000018687) #20	GOT1 (ENSPCOG00000027796) #22	CNNM1 (ENSPCOG00000028638) #23	HPSE2 (ENSPCOG00000022122) #26	HPS1 (ENSPCOG00000017215) #27	PYROXD2 (ENSPCOG00000018342)	LOXL4 (ENSPCOG00000015110) #28	R3HCC1L (ENSPCOG00000025907) #29
Greater bamboo lemur	MODERN SPECIES	968	PKD2L1 (ENSPSMG00000012616)	ENSPSMG00000012584 #7	CWF19L1 (ENSPSMG00000012541) #8	CHUK (ENSPSMG00000012497) #9	ERLIN1 (ENSPSMG00000012426) #10	ENSPSMG00000011438	CPN1 (ENSPSMG00000010767) #12	ENSPSMG00000010760	DNMBP (ENSPSMG00000010675) #13	ABCC2 (ENSPSMG00000010528) #15	CUTC (ENSPSMG00000010417) #16	COX15 (ENSPSMG00000010383) #17	ENTPD7 (ENSPSMG00000010334) #18	SLC25A28 (ENSPSMG00000010302) #19	NKX2-3 (ENSPSMG00000010298) #20	GOT1 (ENSPSMG00000010275) #22	CNNM1 (ENSPSMG00000010230) #23	ENSPSMG00000010211	HPSE2 (ENSPSMG00000010143) #26	HPS1 (ENSPSMG00000009889) #27	PYROXD2 (ENSPSMG00000009714)	LOXL4 (ENSPSMG00000009688) #28	R3HCC1L (ENSPSMG00000009613) #29	CRTAC1 (ENSPSMG00000009508) #30	GOLGA7B (ENSPSMG00000009462) #31	SFRP5 (ENSPSMG00000009435) #32	ZFYVE27 (ENSPSMG00000009295) #33	MARVELD1 (ENSPSMG00000009082) #34	AVPI1 (ENSPSMG00000009076) #35	PI4K2A (ENSPSMG00000009062) #36	MORN4 (ENSPSMG00000009044) #37
Bushbaby	MODERN SPECIES	136	WNT8B (ENSOGAG00000029889)	SCD (ENSOGAG00000002486)	PKD2L1 (ENSOGAG00000013430)	BLOC1S2 (ENSOGAG00000001395) #7	CWF19L1 (ENSOGAG00000013425) #8	CHUK (ENSOGAG00000013415) #9	ERLIN1 (ENSOGAG00000026651) #10	CPN1 (ENSOGAG00000008493) #12	DNMBP (ENSOGAG00000001589) #13	ABCC2 (ENSOGAG00000001587) #15	CUTC (ENSOGAG00000001584) #16	COX15 (ENSOGAG00000001582) #17	ENTPD7 (ENSOGAG00000001579) #18	SLC25A28 (ENSOGAG00000005668) #19	NKX2-3 (ENSOGAG00000013370) #20	GOT1 (ENSOGAG00000005666) #22	CNNM1 (ENSOGAG00000027397) #23	HPSE2 (ENSOGAG00000013186) #26	HPS1 (ENSOGAG00000013179) #27	PYROXD2 (ENSOGAG00000013175)	LOXL4 (ENSOGAG00000013165) #28	R3HCC1L (ENSOGAG00000013152) #29	CRTAC1 (ENSOGAG00000014055) #30	GOLGA7B (ENSOGAG00000017079) #31	SFRP5 (ENSOGAG00000017076) #32	ZFYVE27 (ENSOGAG00000033211) #33	MARVELD1 (ENSOGAG00000024985) #34	AVPI1 (ENSOGAG00000024961) #35	PI4K2A (ENSOGAG00000009957) #36	MORN4 (ENSOGAG00000008789) #37	HOGA1 (ENSOGAG00000008783)
Euarchontoglires_A	ANCESTRAL SPECIES	15	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Tree shrew	MODERN SPECIES	844																GOT1 (ENSTBEG00000015886) #22	ENSTBEG00000015777 #23
Glires	ANCESTRAL SPECIES	16	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Rodentia	ANCESTRAL SPECIES	16	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Rodentia_B	ANCESTRAL SPECIES	10	ENSGT00940000154908.s.a	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000154908.s.a	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Muroidea	ANCESTRAL SPECIES	1	ENSGT00940000154908.s.a	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000162971.c.b	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000162971.c.b	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00940000162971.c.b	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Northern American deer mouse	MODERN SPECIES		Pkd2l1 (ENSPEMG00000003667)	Bloc1s2 (ENSPEMG00000015678) #7	ENSPEMG00000028291	Cwf19l1 (ENSPEMG00000013069) #8	Chuk (ENSPEMG00000003607) #9	Erlin1 (ENSPEMG00000018538) #10	Cyp2c23 (ENSPEMG00000009996)	Cpn1 (ENSPEMG00000017111) #12	Dnmbp (ENSPEMG00000004169) #13	Abcc2 (ENSPEMG00000011249) #15	Cutc (ENSPEMG00000008839) #16	Cox15 (ENSPEMG00000014240) #17	Entpd7 (ENSPEMG00000010179) #18	Slc25a28 (ENSPEMG00000012732) #19	Nkx2-3 (ENSPEMG00000030266) #20	Got1 (ENSPEMG00000010376) #22	Cnnm1 (ENSPEMG00000007501) #23	Hpse2 (ENSPEMG00000009236) #26	Hps1 (ENSPEMG00000016367) #27	Pyroxd2 (ENSPEMG00000008189)	Loxl4 (ENSPEMG00000013107) #28	R3hcc1l (ENSPEMG00000009290) #29	Crtac1 (ENSPEMG00000018527) #30	Golga7b (ENSPEMG00000019018) #31	Sfrp5 (ENSPEMG00000018114) #32	Zfyve27 (ENSPEMG00000000658) #33	Marveld1 (ENSPEMG00000000505) #34	Avpi1 (ENSPEMG00000011234) #35	Pi4k2a (ENSPEMG00000016260) #36	Morn4 (ENSPEMG00000027726) #37	Hoga1 (ENSPEMG00000014860)
Prairie vole	MODERN SPECIES	16	Scd3 (ENSMOCG00000001880)	Pkd2l1 (ENSMOCG00000006800)	Bloc1s2 (ENSMOCG00000003511) #7	Cwf19l1 (ENSMOCG00000021513) #8	Chuk (ENSMOCG00000020869) #9	Erlin1 (ENSMOCG00000017984) #10	ENSMOCG00000022931	Cpn1 (ENSMOCG00000020512) #12	Dnmbp (ENSMOCG00000015535) #13	Abcc2 (ENSMOCG00000008644) #15	Cutc (ENSMOCG00000002743) #16	Cox15 (ENSMOCG00000001780) #17	Entpd7 (ENSMOCG00000020235) #18	Slc25a28 (ENSMOCG00000015560) #19	Nkx2-3 (ENSMOCG00000013130) #20	Got1 (ENSMOCG00000022592) #22	Cnnm1 (ENSMOCG00000006772) #23	ENSMOCG00000002567	Hpse2 (ENSMOCG00000002351) #26	Hps1 (ENSMOCG00000002839) #27	Pyroxd2 (ENSMOCG00000003523)	Loxl4 (ENSMOCG00000018615) #28	ENSMOCG00000019358 #29	Crtac1 (ENSMOCG00000021947) #30	Golga7b (ENSMOCG00000018394) #31	Sfrp5 (ENSMOCG00000017190) #32	Zfyve27 (ENSMOCG00000014672) #33	Marveld1 (ENSMOCG00000013119) #34	Avpi1 (ENSMOCG00000012593) #35	Pi4k2a (ENSMOCG00000012623) #36	Morn4 (ENSMOCG00000011013) #37
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000162971.c.b	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Golden Hamster	MODERN SPECIES	617	ENSMAUG00000016232	ENSMAUG00000018775	Scd3 (ENSMAUG00000019555)	Pkd2l1 (ENSMAUG00000017374)	Cwf19l1 (ENSMAUG00000016480) #8	Chuk (ENSMAUG00000017206) #9	Erlin1 (ENSMAUG00000019313) #10	Cpn1 (ENSMAUG00000020473) #12	Dnmbp (ENSMAUG00000021363) #13	Abcc2 (ENSMAUG00000017544) #15	Cutc (ENSMAUG00000017160) #16	Cox15 (ENSMAUG00000019550) #17	Entpd7 (ENSMAUG00000018067) #18	Slc25a28 (ENSMAUG00000016762) #19	Nkx2-3 (ENSMAUG00000019421) #20	Got1 (ENSMAUG00000017853) #22	Cnnm1 (ENSMAUG00000018739) #23	Hpse2 (ENSMAUG00000020448) #26	Hps1 (ENSMAUG00000019246) #27	Pyroxd2 (ENSMAUG00000017820)	Loxl4 (ENSMAUG00000019599) #28	ENSMAUG00000018764 #29	Crtac1 (ENSMAUG00000019399) #30	Golga7b (ENSMAUG00000019120) #31	Sfrp5 (ENSMAUG00000019322) #32	Zfyve27 (ENSMAUG00000020339) #33	Marveld1 (ENSMAUG00000020397) #34	Avpi1 (ENSMAUG00000020844) #35	Pi4k2a (ENSMAUG00000018850) #36	Morn4 (ENSMAUG00000019301) #37	Hoga1 (ENSMAUG00000021216)
Chinese hamster chok1gshd	MODERN SPECIES	263	Pkd2l1 (ENSCGRG00001014175)	Bloc1s2 (ENSCGRG00001015011) #7	Cwf19l1 (ENSCGRG00001015704) #8	Chuk (ENSCGRG00001016974) #9	Erlin1 (ENSCGRG00001018321) #10	Cyp2c23 (ENSCGRG00001019601)	Cpn1 (ENSCGRG00001020231) #12	Dnmbp (ENSCGRG00001002955) #13	Abcc2 (ENSCGRG00001011487) #15	Cutc (ENSCGRG00001013542) #16	Cox15 (ENSCGRG00001014605) #17	Entpd7 (ENSCGRG00001015434) #18	Slc25a28 (ENSCGRG00001016289) #19	ENSCGRG00001011590	Nkx2-3 (ENSCGRG00001011819) #20	Got1 (ENSCGRG00001012066) #22	Cnnm1 (ENSCGRG00001012560) #23	Hpse2 (ENSCGRG00001015117) #26	Hps1 (ENSCGRG00001017475) #27	Pyroxd2 (ENSCGRG00001020681)	Loxl4 (ENSCGRG00001021180) #28	R3hcc1l (ENSCGRG00001022500) #29	Crtac1 (ENSCGRG00001023131) #30	Golga7b (ENSCGRG00001000198) #31	Sfrp5 (ENSCGRG00001000510) #32	Zfyve27 (ENSCGRG00001001467) #33	Marveld1 (ENSCGRG00001015304) #34	Avpi1 (ENSCGRG00001003238) #35	Pi4k2a (ENSCGRG00001006184) #36	Morn4 (ENSCGRG00001008672) #37	Hoga1 (ENSCGRG00001010186)
Murinae	ANCESTRAL SPECIES		ENSGT00940000162971.c.b	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Mus	ANCESTRAL SPECIES		ENSGT00940000162971.c.b	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000162971.c.b	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000162971.c.b	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Mus_C	ANCESTRAL SPECIES	24	ENSGT00940000162971.c.b	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	3317	ENSMSIG00000013578	ENSMSIG00000013604	Pkd2l1 (ENSMSIG00000013623)	ENSMSIG00000013690 #7	Cwf19l1 (ENSMSIG00000013717) #8	Chuk (ENSMSIG00000013784) #9	ENSMSIG00000013896	Cpn1 (ENSMSIG00000013970) #12	Dnmbp (ENSMSIG00000013995) #13	Abcc2 (ENSMSIG00000014396) #15	Cutc (ENSMSIG00000014461) #16	Cox15 (ENSMSIG00000014488) #17	Entpd7 (ENSMSIG00000014516) #18	Slc25a28 (ENSMSIG00000014549) #19	Nkx2-3 (ENSMSIG00000014564) #20	ENSMSIG00000014579 #22	Cnnm1 (ENSMSIG00000014602) #23	ENSMSIG00000014652 #26	ENSMSIG00000014659
Steppe mouse	MODERN SPECIES	2895														Trmt11 (ENSMSIG00000000873)	ENSMSIG00000000946	ENSMSIG00000000980 #22	Cenpw (ENSMSIG00000000994)	ENSMSIG00000001019	ENSMSIG00000001036	Rspo3 (ENSMSIG00000001044)	Rnf146 (ENSMSIG00000001088)	ENSMSIG00000001121	9330159F19Rik (ENSMSIG00000001137)	Soga3 (ENSMSIG00000001173)	ENSMSIG00000001198
spretus	MODERN SPECIES	10	Scd3 (MGP_SPRETEiJ_G0023916)	Pkd2l1 (MGP_SPRETEiJ_G0023915)	Bloc1s2 (MGP_SPRETEiJ_G0023914) #7	Cwf19l1 (MGP_SPRETEiJ_G0023913) #8	Chuk (MGP_SPRETEiJ_G0023912) #9	Erlin1 (MGP_SPRETEiJ_G0023911) #10	Cyp2c23 (MGP_SPRETEiJ_G0023910)	Cpn1 (MGP_SPRETEiJ_G0023909) #12	Dnmbp (MGP_SPRETEiJ_G0023908) #13	Abcc2 (MGP_SPRETEiJ_G0023907) #15	Cutc (MGP_SPRETEiJ_G0023906) #16	Cox15 (MGP_SPRETEiJ_G0023905) #17	Entpd7 (MGP_SPRETEiJ_G0023904) #18	Slc25a28 (MGP_SPRETEiJ_G0023903) #19	Nkx2-3 (MGP_SPRETEiJ_G0023902) #20	Got1 (MGP_SPRETEiJ_G0023901) #22	Cnnm1 (MGP_SPRETEiJ_G0023900) #23	Hpse2 (MGP_SPRETEiJ_G0023899) #26	Hps1 (MGP_SPRETEiJ_G0023898) #27	Pyroxd2 (MGP_SPRETEiJ_G0023897)	Loxl4 (MGP_SPRETEiJ_G0023896) #28	R3hcc1l (MGP_SPRETEiJ_G0023895) #29	Crtac1 (MGP_SPRETEiJ_G0023894) #30	Golga7b (MGP_SPRETEiJ_G0023893) #31	Sfrp5 (MGP_SPRETEiJ_G0023892) #32	Zfyve27 (MGP_SPRETEiJ_G0023891) #33	Marveld1 (MGP_SPRETEiJ_G0023890) #34	Avpi1 (MGP_SPRETEiJ_G0023889) #35	Pi4k2a (MGP_SPRETEiJ_G0023888) #36	Morn4 (MGP_SPRETEiJ_G0023887) #37	4933411K16Rik (MGP_SPRETEiJ_G0023886)
Mouse	MODERN SPECIES	10	Scd3 (ENSMUSG00000025202)	Pkd2l1 (ENSMUSG00000037578)	Bloc1s2 (ENSMUSG00000057506) #7	Cwf19l1 (ENSMUSG00000025200) #8	Chuk (ENSMUSG00000025199) #9	Erlin1 (ENSMUSG00000025198) #10	Cyp2c23 (ENSMUSG00000025197)	Cpn1 (ENSMUSG00000025196) #12	Dnmbp (ENSMUSG00000025195) #13	Abcc2 (ENSMUSG00000025194) #15	Cutc (ENSMUSG00000025193) #16	Cox15 (ENSMUSG00000040018) #17	Entpd7 (ENSMUSG00000025192) #18	Slc25a28 (ENSMUSG00000040414) #19	Nkx2-3 (ENSMUSG00000044220) #20	Got1 (ENSMUSG00000025190) #22	Cnnm1 (ENSMUSG00000025189) #23	Hpse2 (ENSMUSG00000074852) #26	Hps1 (ENSMUSG00000025188) #27	Pyroxd2 (ENSMUSG00000060224)	Loxl4 (ENSMUSG00000025185) #28	R3hcc1l (ENSMUSG00000025184) #29	Crtac1 (ENSMUSG00000042401) #30	Golga7b (ENSMUSG00000042532) #31	Sfrp5 (ENSMUSG00000018822) #32	Zfyve27 (ENSMUSG00000018820) #33	Marveld1 (ENSMUSG00000044345) #34	Avpi1 (ENSMUSG00000018821) #35	Pi4k2a (ENSMUSG00000025178) #36	Morn4 (ENSMUSG00000049670) #37	4933411K16Rik (ENSMUSG00000090369)
Ryukyu mouse	MODERN SPECIES	10	Scd3 (MGP_CAROLIEiJ_G0022995)	Pkd2l1 (MGP_CAROLIEiJ_G0022994)	Bloc1s2 (MGP_CAROLIEiJ_G0022993) #7	Cwf19l1 (MGP_CAROLIEiJ_G0022992) #8	Chuk (MGP_CAROLIEiJ_G0022991) #9	Erlin1 (MGP_CAROLIEiJ_G0022990) #10	Cyp2c23 (MGP_CAROLIEiJ_G0022989)	Cpn1 (MGP_CAROLIEiJ_G0022988) #12	Dnmbp (MGP_CAROLIEiJ_G0022987) #13	Abcc2 (MGP_CAROLIEiJ_G0022986) #15	Cutc (MGP_CAROLIEiJ_G0022985) #16	Cox15 (MGP_CAROLIEiJ_G0022984) #17	Entpd7 (MGP_CAROLIEiJ_G0022983) #18	Slc25a28 (MGP_CAROLIEiJ_G0022982) #19	Nkx2-3 (MGP_CAROLIEiJ_G0022981) #20	Got1 (MGP_CAROLIEiJ_G0022980) #22	Cnnm1 (MGP_CAROLIEiJ_G0022979) #23	Hpse2 (MGP_CAROLIEiJ_G0022978) #26	Hps1 (MGP_CAROLIEiJ_G0022977) #27	Pyroxd2 (MGP_CAROLIEiJ_G0022976)	Loxl4 (MGP_CAROLIEiJ_G0022975) #28	R3hcc1l (MGP_CAROLIEiJ_G0022974) #29	Crtac1 (MGP_CAROLIEiJ_G0022973) #30	Golga7b (MGP_CAROLIEiJ_G0022972) #31	Sfrp5 (MGP_CAROLIEiJ_G0022971) #32	Zfyve27 (MGP_CAROLIEiJ_G0022970) #33	Marveld1 (MGP_CAROLIEiJ_G0022969) #34	Avpi1 (MGP_CAROLIEiJ_G0022968) #35	Pi4k2a (MGP_CAROLIEiJ_G0022967) #36	Morn4 (MGP_CAROLIEiJ_G0022966) #37	4933411K16Rik (MGP_CAROLIEiJ_G0022965)
Shrew mouse	MODERN SPECIES		Scd3 (MGP_PahariEiJ_G0014485)	Pkd2l1 (MGP_PahariEiJ_G0014484)	Bloc1s2 (MGP_PahariEiJ_G0014483) #7	Cwf19l1 (MGP_PahariEiJ_G0014482) #8	Chuk (MGP_PahariEiJ_G0014481) #9	Erlin1 (MGP_PahariEiJ_G0014480) #10	Cyp2c23 (MGP_PahariEiJ_G0014479)	Cpn1 (MGP_PahariEiJ_G0014478) #12	Dnmbp (MGP_PahariEiJ_G0014477) #13	Abcc2 (MGP_PahariEiJ_G0014476) #15	Cutc (MGP_PahariEiJ_G0014475) #16	Cox15 (MGP_PahariEiJ_G0014474) #17	Entpd7 (MGP_PahariEiJ_G0014473) #18	Slc25a28 (MGP_PahariEiJ_G0014472) #19	Nkx2-3 (MGP_PahariEiJ_G0014471) #20	Got1 (MGP_PahariEiJ_G0014470) #22	Cnnm1 (MGP_PahariEiJ_G0014469) #23	Hpse2 (MGP_PahariEiJ_G0014468) #26	Hps1 (MGP_PahariEiJ_G0014467) #27	Pyroxd2 (MGP_PahariEiJ_G0014466)	Loxl4 (MGP_PahariEiJ_G0014465) #28	R3hcc1l (MGP_PahariEiJ_G0014464) #29	Crtac1 (MGP_PahariEiJ_G0014463) #30	Golga7b (MGP_PahariEiJ_G0014462) #31	Sfrp5 (MGP_PahariEiJ_G0014461) #32	Zfyve27 (MGP_PahariEiJ_G0014460) #33	Marveld1 (MGP_PahariEiJ_G0014459) #34	Avpi1 (MGP_PahariEiJ_G0014458) #35	Pi4k2a (MGP_PahariEiJ_G0014457) #36	Morn4 (MGP_PahariEiJ_G0014456) #37	4933411K16Rik (MGP_PahariEiJ_G0014455)
Rat	MODERN SPECIES		LOC681458 (ENSRNOG00000013279)	Pkd2l1 (ENSRNOG00000012591)	Bloc1s2 (ENSRNOG00000012684) #7	Cwf19l1 (ENSRNOG00000012763) #8	Chuk (ENSRNOG00000022485) #9	Erlin1 (ENSRNOG00000012911) #10	Cyp2c23 (ENSRNOG00000013291)	Cpn1 (ENSRNOG00000013439) #12	Dnmbp (ENSRNOG00000050742) #13	Abcc2 (ENSRNOG00000046727) #15	Cutc (ENSRNOG00000017298) #16	Cox15 (ENSRNOG00000017230) #17	Entpd7 (ENSRNOG00000016883) #18	Slc25a28 (ENSRNOG00000016751) #19	Nkx2-3 (ENSRNOG00000016656) #20	Got1 (ENSRNOG00000016356) #22	Cnnm1 (ENSRNOG00000016302) #23	ENSRNOG00000065211	Hpse2 (ENSRNOG00000064037) #26	Hps1 (ENSRNOG00000045838) #27	Pyroxd2 (ENSRNOG00000015807)	Loxl4 (ENSRNOG00000015727) #28	R3hcc1l (ENSRNOG00000051256) #29	Crtac1 (ENSRNOG00000015220) #30	Golga7b (ENSRNOG00000015051) #31	AABR07006871.1 (ENSRNOG00000053536)	Sfrp5 (ENSRNOG00000014940) #32	Zfyve27 (ENSRNOG00000014903) #33	Marveld1 (ENSRNOG00000042620)	Avpi1 (ENSRNOG00000014828) #35	Pi4k2a (ENSRNOG00000014675) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	771									Dnmbp (ENSNGAG00000011513) #13	Abcc2 (ENSNGAG00000017615) #15	Cutc (ENSNGAG00000024190) #16	Cox15 (ENSNGAG00000023623) #17	Entpd7 (ENSNGAG00000012372) #18	Slc25a28 (ENSNGAG00000023260) #19	Nkx2-3 (ENSNGAG00000021093) #20	Got1 (ENSNGAG00000005165) #22	Cnnm1 (ENSNGAG00000016351) #23	Hpse2 (ENSNGAG00000021159) #26	Hps1 (ENSNGAG00000013601) #27	Pyroxd2 (ENSNGAG00000021947)	Loxl4 (ENSNGAG00000014165) #28	ENSNGAG00000017124 #29	Crtac1 (ENSNGAG00000021345) #30	Golga7b (ENSNGAG00000001605) #31	Sfrp5 (ENSNGAG00000022581) #32	Zfyve27 (ENSNGAG00000012854) #33	Marveld1 (ENSNGAG00000006309) #34	Avpi1 (ENSNGAG00000020134) #35	Pi4k2a (ENSNGAG00000022396) #36	Morn4 (ENSNGAG00000018405) #37	Hoga1 (ENSNGAG00000023929)
Lesser Egyptian jerboa	MODERN SPECIES	179	Pkd2l1 (ENSJJAG00000013834)	ENSJJAG00000015079 #7	Cwf19l1 (ENSJJAG00000015368) #8	ENSJJAG00000016093 #9	Erlin1 (ENSJJAG00000016685) #10	Cpn1 (ENSJJAG00000016862) #12	Dnmbp (ENSJJAG00000017540) #13	Abcc2 (ENSJJAG00000020088) #15	ENSJJAG00000010550 #16	Cox15 (ENSJJAG00000011715) #17	ENSJJAG00000012745	Entpd7 (ENSJJAG00000015308) #18	ENSJJAG00000015832	Slc25a28 (ENSJJAG00000016611) #19	Nkx2-3 (ENSJJAG00000017127) #20	Got1 (ENSJJAG00000019106) #22	Cnnm1 (ENSJJAG00000013432) #23	Hpse2 (ENSJJAG00000015190) #26	Hps1 (ENSJJAG00000017073) #27	Pyroxd2 (ENSJJAG00000022532)	Loxl4 (ENSJJAG00000013296) #28	ENSJJAG00000020251 #29	Crtac1 (ENSJJAG00000020645) #30	Golga7b (ENSJJAG00000021511) #31	Sfrp5 (ENSJJAG00000022836) #32	Zfyve27 (ENSJJAG00000005638) #33	Marveld1 (ENSJJAG00000012601) #34	Avpi1 (ENSJJAG00000021703) #35	Pi4k2a (ENSJJAG00000021991) #36	Morn4 (ENSJJAG00000013030) #37	Hoga1 (ENSJJAG00000013267)
Kangaroo rat	MODERN SPECIES	355	Pkd2l1 (ENSDORG00000006223)	Bloc1s2 (ENSDORG00000028226) #7	Cwf19l1 (ENSDORG00000011967) #8	Chuk (ENSDORG00000011965) #9	Erlin1 (ENSDORG00000026468) #10	ENSDORG00000027804	Cpn1 (ENSDORG00000011960) #12	ENSDORG00000011072 #13	Abcc2 (ENSDORG00000009085) #15	ENSDORG00000028853	Cutc (ENSDORG00000005428) #16	Cox15 (ENSDORG00000005427) #17	Entpd7 (ENSDORG00000005426) #18	Slc25a28 (ENSDORG00000003647) #19	Nkx2-3 (ENSDORG00000003645) #20	Got1 (ENSDORG00000014708) #22	Cnnm1 (ENSDORG00000014706) #23	Hpse2 (ENSDORG00000003807) #26	Hps1 (ENSDORG00000003804) #27	Pyroxd2 (ENSDORG00000003802)	Loxl4 (ENSDORG00000015733) #28	ENSDORG00000024055 #29	Crtac1 (ENSDORG00000015477) #30	Golga7b (ENSDORG00000015475) #31	Sfrp5 (ENSDORG00000008180) #32	Zfyve27 (ENSDORG00000008178) #33	Marveld1 (ENSDORG00000002279) #34	Avpi1 (ENSDORG00000028399) #35	Pi4k2a (ENSDORG00000002269) #36	Morn4 (ENSDORG00000016540) #37	Hoga1 (ENSDORG00000016537)
Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Sciuridae	ANCESTRAL SPECIES	21	ENSGT00940000154908.q.a.b	ENSGT00940000154908.q.b	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Marmotini	ANCESTRAL SPECIES	16	ENSGT01030000234637.a.b.b.j.a	ENSGT00940000154908.q.b	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Marmotini_b	ANCESTRAL SPECIES	97					ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Arctic ground squirrel	MODERN SPECIES	145				CWF19L1 (ENSUPAG00010018584) #8	CHUK (ENSUPAG00010018536) #9	ERLIN1 (ENSUPAG00010018524) #10	CPN1 (ENSUPAG00010018515) #12	DNMBP (ENSUPAG00010018385) #13	ABCC2 (ENSUPAG00010018333) #15	CUTC (ENSUPAG00010018317) #16	COX15 (ENSUPAG00010018308) #17	ENTPD7 (ENSUPAG00010018296) #18	SLC25A28 (ENSUPAG00010018285) #19	NKX2-3 (ENSUPAG00010018277) #20	ENSUPAG00010018264	GOT1 (ENSUPAG00010018253) #22	CNNM1 (ENSUPAG00010018225) #23	HPSE2 (ENSUPAG00010018211) #26	HPS1 (ENSUPAG00010015101) #27	PYROXD2 (ENSUPAG00010015034)	LOXL4 (ENSUPAG00010014949) #28	R3HCC1L (ENSUPAG00010014922) #29	CRTAC1 (ENSUPAG00010014843) #30	GOLGA7B (ENSUPAG00010014804) #31	SFRP5 (ENSUPAG00010014793) #32	ZFYVE27 (ENSUPAG00010014758) #33	MARVELD1 (ENSUPAG00010014753) #34	AVPI1 (ENSUPAG00010014745) #35	PI4K2A (ENSUPAG00010014721) #36	MORN4 (ENSUPAG00010014704) #37	ENSUPAG00010014696
Squirrel	MODERN SPECIES	236					CWF19L1 (ENSSTOG00000005784) #8	CHUK (ENSSTOG00000016412) #9	ERLIN1 (ENSSTOG00000028018) #10	CPN1 (ENSSTOG00000008870) #12	DNMBP (ENSSTOG00000008832) #13	ABCC2 (ENSSTOG00000009688) #15	CUTC (ENSSTOG00000010467) #16	COX15 (ENSSTOG00000010459) #17	ENTPD7 (ENSSTOG00000010447) #18	SLC25A28 (ENSSTOG00000027786) #19	NKX2-3 (ENSSTOG00000010439) #20	GOT1 (ENSSTOG00000007527) #22	CNNM1 (ENSSTOG00000019801) #23	HPSE2 (ENSSTOG00000003713) #26	HPS1 (ENSSTOG00000003686) #27	PYROXD2 (ENSSTOG00000003659)	LOXL4 (ENSSTOG00000026677) #28	R3HCC1L (ENSSTOG00000021571) #29	CRTAC1 (ENSSTOG00000012122) #30	GOLGA7B (ENSSTOG00000012116) #31	SFRP5 (ENSSTOG00000012113) #32	ZFYVE27 (ENSSTOG00000012103) #33	MARVELD1 (ENSSTOG00000006756) #34	AVPI1 (ENSSTOG00000029293) #35	PI4K2A (ENSSTOG00000006737) #36	MORN4 (ENSSTOG00000026926) #37	HOGA1 (ENSSTOG00000011929)
Alpin marmot	MODERN SPECIES	39	ENSMMMG00000022981	ENSMMMG00000022972	PKD2L1 (ENSMMMG00000022963)	BLOC1S2 (ENSMMMG00000022960) #7	CWF19L1 (ENSMMMG00000022947) #8	CHUK (ENSMMMG00000022931) #9	ERLIN1 (ENSMMMG00000022928) #10	CPN1 (ENSMMMG00000022921) #12	DNMBP (ENSMMMG00000022849) #13	ABCC2 (ENSMMMG00000022832) #15	ENSMMMG00000022829 #16	COX15 (ENSMMMG00000022826) #17	ENTPD7 (ENSMMMG00000022820) #18	SLC25A28 (ENSMMMG00000022817) #19	NKX2-3 (ENSMMMG00000022815) #20	GOT1 (ENSMMMG00000022811) #22	CNNM1 (ENSMMMG00000022793) #23	HPSE2 (ENSMMMG00000022778) #26	HPS1 (ENSMMMG00000021856) #27	PYROXD2 (ENSMMMG00000021833)	LOXL4 (ENSMMMG00000021798) #28	R3HCC1L (ENSMMMG00000021780) #29	CRTAC1 (ENSMMMG00000021757) #30	GOLGA7B (ENSMMMG00000021751) #31	SFRP5 (ENSMMMG00000021743) #32	ZFYVE27 (ENSMMMG00000021729) #33	AVPI1 (ENSMMMG00000021725) #35	PI4K2A (ENSMMMG00000021697) #36	ENSMMMG00000021693 #37	C10orf62 (ENSMMMG00000021691)	HOGA1 (ENSMMMG00000021688)
Eurasian red squirrel	MODERN SPECIES	13	ENSSVLG00005011263	PKD2L1 (ENSSVLG00005011378)	BLOC1S2 (ENSSVLG00005011909) #7	CWF19L1 (ENSSVLG00005012058) #8	CHUK (ENSSVLG00005012127) #9	ERLIN1 (ENSSVLG00005012186) #10	ENSSVLG00005012246	CPN1 (ENSSVLG00005012310) #12	DNMBP (ENSSVLG00005012459) #13	ABCC2 (ENSSVLG00005012720) #15	CUTC (ENSSVLG00005013175) #16	COX15 (ENSSVLG00005013263) #17	ENTPD7 (ENSSVLG00005013324) #18	SLC25A28 (ENSSVLG00005013360) #19	NKX2-3 (ENSSVLG00005013448) #20	GOT1 (ENSSVLG00005013505) #22	CNNM1 (ENSSVLG00005013611) #23	HPSE2 (ENSSVLG00005014098) #26	HPS1 (ENSSVLG00005014775) #27	PYROXD2 (ENSSVLG00005015178)	LOXL4 (ENSSVLG00005015215) #28	R3HCC1L (ENSSVLG00005015247) #29	CRTAC1 (ENSSVLG00005015382) #30	GOLGA7B (ENSSVLG00005015799) #31	SFRP5 (ENSSVLG00005015909) #32	ZFYVE27 (ENSSVLG00005015995) #33	MARVELD1 (ENSSVLG00005016317) #34	AVPI1 (ENSSVLG00005016336) #35	PI4K2A (ENSSVLG00005016376) #36	MORN4 (ENSSVLG00005016417) #37	HOGA1 (ENSSVLG00005016513)
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Hystricomorpha_b	ANCESTRAL SPECIES	14	ENSGT00940000154908.o	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Long-tailed chinchilla	MODERN SPECIES	214	SCD (ENSCLAG00000002366)	PKD2L1 (ENSCLAG00000012878)	BLOC1S2 (ENSCLAG00000012543) #7	CWF19L1 (ENSCLAG00000007821) #8	CHUK (ENSCLAG00000003896) #9	ERLIN1 (ENSCLAG00000003770) #10	ENSCLAG00000003725	CPN1 (ENSCLAG00000003686) #12	DNMBP (ENSCLAG00000003323) #13	ABCC2 (ENSCLAG00000003041) #15	CUTC (ENSCLAG00000004139) #16	COX15 (ENSCLAG00000004070) #17	ENTPD7 (ENSCLAG00000004017) #18	SLC25A28 (ENSCLAG00000002948) #19	NKX2-3 (ENSCLAG00000002178) #20	GOT1 (ENSCLAG00000002152) #22	CNNM1 (ENSCLAG00000002026) #23	HPSE2 (ENSCLAG00000001979) #26	HPS1 (ENSCLAG00000003379) #27	PYROXD2 (ENSCLAG00000003225)	LOXL4 (ENSCLAG00000002846) #28	R3HCC1L (ENSCLAG00000002695) #29	CRTAC1 (ENSCLAG00000002601) #30	GOLGA7B (ENSCLAG00000002560) #31	SFRP5 (ENSCLAG00000002118) #32	ZFYVE27 (ENSCLAG00000002084) #33	MARVELD1 (ENSCLAG00000002008) #34	AVPI1 (ENSCLAG00000001993) #35	PI4K2A (ENSCLAG00000001867) #36	MORN4 (ENSCLAG00000001852) #37	HOGA1 (ENSCLAG00000002513)
Degu	MODERN SPECIES	51	CWF19L1 (ENSODEG00000017213) #8	CHUK (ENSODEG00000016580) #9	ERLIN1 (ENSODEG00000016587) #10	ENSODEG00000020374	ENSODEG00000016389	ENSODEG00000020402	CPN1 (ENSODEG00000016323) #12	DNMBP (ENSODEG00000017308) #13	ABCC2 (ENSODEG00000016634) #15	CUTC (ENSODEG00000016369) #16	ENSODEG00000016221 #17	ENSODEG00000016548	ENTPD7 (ENSODEG00000016776) #18	ENSODEG00000016497 #19	NKX2-3 (ENSODEG00000016861) #20	GOT1 (ENSODEG00000016726) #22	CNNM1 (ENSODEG00000016538) #23	ENSODEG00000016599	HPSE2 (ENSODEG00000016711) #26	HPS1 (ENSODEG00000016655) #27	PYROXD2 (ENSODEG00000016020)	LOXL4 (ENSODEG00000016342) #28	ENSODEG00000016477	ENSODEG00000016256 #29	CRTAC1 (ENSODEG00000015999) #30	GOLGA7B (ENSODEG00000016294) #31	SFRP5 (ENSODEG00000016215) #32	ZFYVE27 (ENSODEG00000016383) #33	MARVELD1 (ENSODEG00000016451) #34	AVPI1 (ENSODEG00000016690) #35	PI4K2A (ENSODEG00000016781) #36
Guinea pig	MODERN SPECIES	1	ENSCPOG00000011758	PKD2L1 (ENSCPOG00000010906)	BLOC1S2 (ENSCPOG00000039806) #7	CWF19L1 (ENSCPOG00000010890) #8	CHUK (ENSCPOG00000022931) #9	ERLIN1 (ENSCPOG00000026732) #10	ENSCPOG00000026359	CPN1 (ENSCPOG00000000190) #12	DNMBP (ENSCPOG00000005939) #13	ABCC2 (ENSCPOG00000010942) #15	CUTC (ENSCPOG00000010941) #16	COX15 (ENSCPOG00000009783) #17	ENTPD7 (ENSCPOG00000009780) #18	SLC25A28 (ENSCPOG00000036710) #19	NKX2-3 (ENSCPOG00000009772) #20	GOT1 (ENSCPOG00000008633) #22	CNNM1 (ENSCPOG00000008627) #23	ENSCPOG00000020409	HPSE2 (ENSCPOG00000007040) #26	HPS1 (ENSCPOG00000007029) #27	PYROXD2 (ENSCPOG00000007018)	LOXL4 (ENSCPOG00000007010) #28	R3HCC1L (ENSCPOG00000007004) #29	CRTAC1 (ENSCPOG00000007832) #30	GOLGA7B (ENSCPOG00000031966) #31	SFRP5 (ENSCPOG00000021880) #32	ENSCPOG00000013283 #33	MARVELD1 (ENSCPOG00000024434) #34	AVPI1 (ENSCPOG00000024508) #35	PI4K2A (ENSCPOG00000004558) #36	MORN4 (ENSCPOG00000031641) #37
Naked mole-rat female	MODERN SPECIES	4	CWF19L1 (ENSHGLG00000018918) #8	CHUK (ENSHGLG00000019084) #9	ERLIN1 (ENSHGLG00000047763) #10	CPN1 (ENSHGLG00000012757) #12	ENSHGLG00000031990	ENSHGLG00000037421	ENSHGLG00000040272	DNMBP (ENSHGLG00000010974) #13	ABCC2 (ENSHGLG00000014313) #15	CUTC (ENSHGLG00000019050) #16	COX15 (ENSHGLG00000041126) #17	ENTPD7 (ENSHGLG00000017820) #18	SLC25A28 (ENSHGLG00000034471) #19	ENSHGLG00000020927	NKX2-3 (ENSHGLG00000042373) #20	GOT1 (ENSHGLG00000010094) #22	CNNM1 (ENSHGLG00000009827) #23	ENSHGLG00000014473 #26	ENSHGLG00000009626	ENSHGLG00000045765	ENSHGLG00000012447	ENSHGLG00000013798 #27	ENSHGLG00000009871	ENSHGLG00000020899	ENSHGLG00000042684 #29	ENSHGLG00000010600 #28	ENSHGLG00000035976	ENSHGLG00000014093	ENSHGLG00000038381	LRRTM3 (ENSHGLG00000016164)	ENSHGLG00000043450
Lagomorpha	ANCESTRAL SPECIES	17	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049709	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820	ENSGT00530000063604.A
Rabbit	MODERN SPECIES	9	ENSOCUG00000014801	ENSOCUG00000037667	ENSOCUG00000001375	PKD2L1 (ENSOCUG00000013146)	BLOC1S2 (ENSOCUG00000013141) #7	CHUK (ENSOCUG00000013114) #9	ERLIN1 (ENSOCUG00000026715) #10	ENSOCUG00000024354	CPN1 (ENSOCUG00000002261) #12	DNMBP (ENSOCUG00000002254) #13	ABCC2 (ENSOCUG00000008164) #15	CUTC (ENSOCUG00000003148) #16	COX15 (ENSOCUG00000003143) #17	ENTPD7 (ENSOCUG00000011679) #18	SLC25A28 (ENSOCUG00000011690) #19	GOT1 (ENSOCUG00000012333) #22	CNNM1 (ENSOCUG00000012318) #23	HPSE2 (ENSOCUG00000001638) #26	HPS1 (ENSOCUG00000001633) #27	ENSOCUG00000038615	PYROXD2 (ENSOCUG00000004995)	LOXL4 (ENSOCUG00000004988) #28	R3HCC1L (ENSOCUG00000004983) #29	CRTAC1 (ENSOCUG00000004978) #30	GOLGA7B (ENSOCUG00000017860) #31	SFRP5 (ENSOCUG00000021137) #32	ZFYVE27 (ENSOCUG00000001352) #33	MARVELD1 (ENSOCUG00000025329) #34	AVPI1 (ENSOCUG00000007821) #35	PI4K2A (ENSOCUG00000007814) #36	MORN4 (ENSOCUG00000007810) #37
Pika	MODERN SPECIES	606															ENSOPRG00000002368 #20	ENSOPRG00000002345 #22	ENSOPRG00000002329 #23
Laurasiatheria	ANCESTRAL SPECIES	14	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Laurasiatheria_a	ANCESTRAL SPECIES	15	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Artiodactyla	ANCESTRAL SPECIES	14	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Suina	ANCESTRAL SPECIES	6	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Chacoan peccary	MODERN SPECIES	955	SCD (ENSCWAG00000018554)	PKD2L1 (ENSCWAG00000018585)	BLOC1S2 (ENSCWAG00000018677) #7	CWF19L1 (ENSCWAG00000018713) #8	CHUK (ENSCWAG00000018766) #9	ERLIN1 (ENSCWAG00000018810) #10	ENSCWAG00000018841	CPN1 (ENSCWAG00000018888) #12	DNMBP (ENSCWAG00000018951) #13	ABCC2 (ENSCWAG00000019120) #15	CUTC (ENSCWAG00000019263) #16	COX15 (ENSCWAG00000019302) #17	ENTPD7 (ENSCWAG00000019327) #18	SLC25A28 (ENSCWAG00000019343) #19	NKX2-3 (ENSCWAG00000019366) #20	GOT1 (ENSCWAG00000019394) #22	CNNM1 (ENSCWAG00000019424) #23	HPSE2 (ENSCWAG00000019523) #26	HPS1 (ENSCWAG00000020101) #27	PYROXD2 (ENSCWAG00000020183)	LOXL4 (ENSCWAG00000020224) #28	R3HCC1L (ENSCWAG00000020239) #29	CRTAC1 (ENSCWAG00000020281) #30	GOLGA7B (ENSCWAG00000011885) #31	SFRP5 (ENSCWAG00000011979) #32	ZFYVE27 (ENSCWAG00000012082) #33	MARVELD1 (ENSCWAG00000012717) #34	AVPI1 (ENSCWAG00000012736) #35	PI4K2A (ENSCWAG00000012772) #36	MORN4 (ENSCWAG00000012823) #37	HOGA1 (ENSCWAG00000012895)
Pig	MODERN SPECIES	5	SCD (ENSSSCG00000010554)	PKD2L1 (ENSSSCG00000010552)	BLOC1S2 (ENSSSCG00000010551) #7	CWF19L1 (ENSSSCG00000010550) #8	CHUK (ENSSSCG00000010548) #9	ENSSSCG00000010546	ENSSSCG00000058016	CPN1 (ENSSSCG00000010545) #12	DNMBP (ENSSSCG00000010544) #13	ABCC2 (ENSSSCG00000010543) #15	CUTC (ENSSSCG00000010542) #16	COX15 (ENSSSCG00000010541) #17	ENTPD7 (ENSSSCG00000010540) #18	SLC25A28 (ENSSSCG00000037536) #19	NKX2-3 (ENSSSCG00000010538) #20	GOT1 (ENSSSCG00000010537) #22	CNNM1 (ENSSSCG00000010536) #23	HPSE2 (ENSSSCG00000010535) #26	HPS1 (ENSSSCG00000010534) #27	PYROXD2 (ENSSSCG00000010533)	LOXL4 (ENSSSCG00000010532) #28	ENSSSCG00000010531 #29	CRTAC1 (ENSSSCG00000010530) #30	GOLGA7B (ENSSSCG00000040359) #31	SFRP5 (ENSSSCG00000010529) #32	ZFYVE27 (ENSSSCG00000010528) #33	MARVELD1 (ENSSSCG00000010527) #34	AVPI1 (ENSSSCG00000036824) #35	PI4K2A (ENSSSCG00000010525) #36	MORN4 (ENSSSCG00000036954) #37	HOGA1 (ENSSSCG00000010523)
Artiodactyla_a	ANCESTRAL SPECIES	14	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Artiodactyla_b	ANCESTRAL SPECIES	13	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Cetacea	ANCESTRAL SPECIES	15	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Odontoceti	ANCESTRAL SPECIES	14	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00950000182965.b.ab	ENSGT00940000158235 #12	ENSGT00950000183178.b.a.kb	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Odontoceti_a	ANCESTRAL SPECIES	11	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00950000182965.b.ab	ENSGT00940000158235 #12	ENSGT00950000183178.b.a.kb	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Odontoceti_b	ANCESTRAL SPECIES	14	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00950000182965.b.ab	ENSGT00940000158235 #12	ENSGT00950000183178.b.a.kb	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00950000182922.a.b.e.b	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Monodontidae	ANCESTRAL SPECIES	14	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00950000182965.b.`b.a	ENSGT00940000158235 #12	ENSGT00950000183178.b.a.kb	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00950000182922.a.b.e.b	ENSGT00940000157556 #20	ENSGT00390000005254.i.a.b.d.a.a.b	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Beluga whale	MODERN SPECIES	65	CHUK (ENSDLEG00000016724) #9	ERLIN1 (ENSDLEG00000016752) #10	ENSDLEG00000016762	ENSDLEG00000016781	CPN1 (ENSDLEG00000016805) #12	DNMBP (ENSDLEG00000016839) #13	ENSDLEG00000016877	ABCC2 (ENSDLEG00000017009) #15	CUTC (ENSDLEG00000018572) #16	COX15 (ENSDLEG00000018589) #17	ENTPD7 (ENSDLEG00000018599) #18	SLC25A28 (ENSDLEG00000018615) #19	ENSDLEG00000018620	NKX2-3 (ENSDLEG00000018624) #20	ENSDLEG00000018627	GOT1 (ENSDLEG00000018631) #22	CNNM1 (ENSDLEG00000018642) #23	ENSDLEG00000018658 #26	HPSE2 (ENSDLEG00000018666) #26	HPS1 (ENSDLEG00000018728) #27	PYROXD2 (ENSDLEG00000019317)	LOXL4 (ENSDLEG00000019384) #28	R3HCC1L (ENSDLEG00000019396) #29	CRTAC1 (ENSDLEG00000015410) #30	GOLGA7B (ENSDLEG00000015445) #31	ENSDLEG00000015480	SFRP5 (ENSDLEG00000015488) #32	ZFYVE27 (ENSDLEG00000015495) #33	MARVELD1 (ENSDLEG00000015515) #34	AVPI1 (ENSDLEG00000015521) #35	PI4K2A (ENSDLEG00000015532) #36
Narwhal	MODERN SPECIES	311	CHUK (ENSMMNG00015021819) #9	ERLIN1 (ENSMMNG00015021807) #10	ENSMMNG00015021772	ENSMMNG00015021751	CPN1 (ENSMMNG00015021745) #12	ENSMMNG00015021741	DNMBP (ENSMMNG00015021703) #13	ABCC2 (ENSMMNG00015021666) #15	CUTC (ENSMMNG00015021646) #16	COX15 (ENSMMNG00015021631) #17	ENTPD7 (ENSMMNG00015021616) #18	SLC25A28 (ENSMMNG00015021609) #19	ENSMMNG00015021602	NKX2-3 (ENSMMNG00015021590) #20	ENSMMNG00015021579	GOT1 (ENSMMNG00015021565) #22	CNNM1 (ENSMMNG00015021551) #23	HPSE2 (ENSMMNG00015021406) #26	HPS1 (ENSMMNG00015021292) #27	PYROXD2 (ENSMMNG00015021259)	LOXL4 (ENSMMNG00015021234) #28	R3HCC1L (ENSMMNG00015021199) #29	CRTAC1 (ENSMMNG00015021140) #30	GOLGA7B (ENSMMNG00015021091) #31	ENSMMNG00015021065	SFRP5 (ENSMMNG00015021053) #32	ZFYVE27 (ENSMMNG00015020926) #33	MARVELD1 (ENSMMNG00015020866) #34	AVPI1 (ENSMMNG00015020853) #35	PI4K2A (ENSMMNG00015020825) #36	MORN4 (ENSMMNG00015020795) #37
Vaquita	MODERN SPECIES	7	CWF19L1 (ENSPSNG00000011631) #8	CHUK (ENSPSNG00000011567) #9	ERLIN1 (ENSPSNG00000011494) #10	ENSPSNG00000011395	ENSPSNG00000011294	CPN1 (ENSPSNG00000011204) #12	ENSPSNG00000011167	DNMBP (ENSPSNG00000010680) #13	ABCC2 (ENSPSNG00000010279) #15	CUTC (ENSPSNG00000010192) #16	COX15 (ENSPSNG00000021978) #17	ENTPD7 (ENSPSNG00000021961) #18	SLC25A28 (ENSPSNG00000021946) #19	ENSPSNG00000021934	NKX2-3 (ENSPSNG00000021922) #20	GOT1 (ENSPSNG00000021906) #22	CNNM1 (ENSPSNG00000021881) #23	HPSE2 (ENSPSNG00000021752) #26	HPS1 (ENSPSNG00000021605) #27	LOXL4 (ENSPSNG00000021534) #28	R3HCC1L (ENSPSNG00000021458) #29	CRTAC1 (ENSPSNG00000021304) #30	GOLGA7B (ENSPSNG00000021258) #31	SFRP5 (ENSPSNG00000021235) #32	ZFYVE27 (ENSPSNG00000021039) #33	MARVELD1 (ENSPSNG00000020968) #34	AVPI1 (ENSPSNG00000020938) #35	PI4K2A (ENSPSNG00000020904) #36	MORN4 (ENSPSNG00000020862) #37	HOGA1 (ENSPSNG00000020786)	ANKRD2 (ENSPSNG00000020585)
Dolphin	MODERN SPECIES	41															NKX2-3 (ENSTTRG00000002171) #20	GOT1 (ENSTTRG00000002165) #22	CNNM1 (ENSTTRG00000002161) #23
Sperm whale	MODERN SPECIES	12	ERLIN1 (ENSPCTG00005017152) #10	ENSPCTG00005017133	ENSPCTG00005017035	ENSPCTG00005016969	ENSPCTG00005016952	CPN1 (ENSPCTG00005016823) #12	ENSPCTG00005016793	DNMBP (ENSPCTG00005016252) #13	ABCC2 (ENSPCTG00005015837) #15	CUTC (ENSPCTG00005015684) #16	COX15 (ENSPCTG00005015651) #17	ENTPD7 (ENSPCTG00005015609) #18	SLC25A28 (ENSPCTG00005015533) #19	ENSPCTG00005015512	NKX2-3 (ENSPCTG00005015458) #20	GOT1 (ENSPCTG00005015383) #22	CNNM1 (ENSPCTG00005015224) #23	HPSE2 (ENSPCTG00005014453) #26	ENSPCTG00005014329 #27	R3HCC1L (ENSPCTG00005014293) #29	SFRP5 (ENSPCTG00005014239) #32	ZFYVE27 (ENSPCTG00005013655) #33	MARVELD1 (ENSPCTG00005013584) #34	AVPI1 (ENSPCTG00005013541) #35	PI4K2A (ENSPCTG00005013487) #36	ENSPCTG00005013431	PGAM1 (ENSPCTG00005013367)	EXOSC1 (ENSPCTG00005013217)	ZDHHC16 (ENSPCTG00005012891)	MMS19 (ENSPCTG00005012756)	RRP12 (ENSPCTG00005011281)
Blue whale	MODERN SPECIES	7	CWF19L1 (ENSBMSG00010020350) #8	CHUK (ENSBMSG00010020396) #9	ERLIN1 (ENSBMSG00010020428) #10	ENSBMSG00010020464	ENSBMSG00010020488	CPN1 (ENSBMSG00010020507) #12	DNMBP (ENSBMSG00010020572) #13	ENSBMSG00010020666	ENSBMSG00010020695 #15	ENSBMSG00010020724 #15	CUTC (ENSBMSG00010020742) #16	COX15 (ENSBMSG00010020776) #17	ENTPD7 (ENSBMSG00010020812) #18	SLC25A28 (ENSBMSG00010020858) #19	NKX2-3 (ENSBMSG00010020878) #20	GOT1 (ENSBMSG00010020897) #22	CNNM1 (ENSBMSG00010020911) #23	HPSE2 (ENSBMSG00010020945) #26	ENSBMSG00010020978	HPS1 (ENSBMSG00010021004) #27	PYROXD2 (ENSBMSG00010021039)	LOXL4 (ENSBMSG00010021080) #28	R3HCC1L (ENSBMSG00010021112) #29	CRTAC1 (ENSBMSG00010021195) #30	ZFYVE27 (ENSBMSG00010021315) #33	ENSBMSG00010021433	SFRP5 (ENSBMSG00010021454) #32	MARVELD1 (ENSBMSG00010021463) #34	AVPI1 (ENSBMSG00010021470) #35	PI4K2A (ENSBMSG00010021477) #36	ENSBMSG00010021499 #37
Pecora	ANCESTRAL SPECIES	12	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889.j #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Percora_a	ANCESTRAL SPECIES	14	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889.j #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Bovidae	ANCESTRAL SPECIES	24	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889.j #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Caprinae	ANCESTRAL SPECIES	19	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889.j #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Rambouillet Sheep	MODERN SPECIES	14	PKD2L1 (ENSOARG00020023638)	ENSOARG00020023608 #7	CWF19L1 (ENSOARG00020023576) #8	CHUK (ENSOARG00020023504) #9	ERLIN1 (ENSOARG00020023462) #10	ENSOARG00020023442	ENSOARG00020023363	CPN1 (ENSOARG00020023321) #12	DNMBP (ENSOARG00020023124) #13	ABCC2 (ENSOARG00020023009) #15	CUTC (ENSOARG00020022982) #16	COX15 (ENSOARG00020022953) #17	ENTPD7 (ENSOARG00020022923) #18	SLC25A28 (ENSOARG00020022896) #19	NKX2-3 (ENSOARG00020022879) #20	GOT1 (ENSOARG00020022840) #22	CNNM1 (ENSOARG00020022788) #23	HPSE2 (ENSOARG00020022137) #26	HPS1 (ENSOARG00020021926) #27	PYROXD2 (ENSOARG00020021749)	LOXL4 (ENSOARG00020021636) #28	CRTAC1 (ENSOARG00020020932) #30	GOLGA7B (ENSOARG00020020851) #31	SFRP5 (ENSOARG00020020728) #32	ZFYVE27 (ENSOARG00020019673) #33	ENSOARG00020019627	MARVELD1 (ENSOARG00020019607) #34	AVPI1 (ENSOARG00020019577) #35	PI4K2A (ENSOARG00020019502) #36	MORN4 (ENSOARG00020019435) #37	HOGA1 (ENSOARG00020019351)
Goat	MODERN SPECIES	18	PKD2L1 (ENSCHIG00000011550)	BLOC1S2 (ENSCHIG00000012162) #7	CWF19L1 (ENSCHIG00000022368) #8	CHUK (ENSCHIG00000017053) #9	ERLIN1 (ENSCHIG00000021174) #10	ENSCHIG00000024200	ENSCHIG00000002220	CPN1 (ENSCHIG00000006379) #12	DNMBP (ENSCHIG00000012404) #13	ABCC2 (ENSCHIG00000023862) #15	CUTC (ENSCHIG00000003099) #16	COX15 (ENSCHIG00000020850) #17	ENTPD7 (ENSCHIG00000010544) #18	SLC25A28 (ENSCHIG00000012444) #19	NKX2-3 (ENSCHIG00000017672) #20	GOT1 (ENSCHIG00000024327) #22	CNNM1 (ENSCHIG00000021440) #23	HPSE2 (ENSCHIG00000007017) #26	HPS1 (ENSCHIG00000015465) #27	PYROXD2 (ENSCHIG00000012022)	LOXL4 (ENSCHIG00000023220) #28	R3HCC1L (ENSCHIG00000015278) #29	CRTAC1 (ENSCHIG00000021520) #30	GOLGA7B (ENSCHIG00000020686) #31	SFRP5 (ENSCHIG00000024678) #32	ZFYVE27 (ENSCHIG00000015749) #33	MARVELD1 (ENSCHIG00000019321) #34	AVPI1 (ENSCHIG00000014474) #35	PI4K2A (ENSCHIG00000019481) #36	MORN4 (ENSCHIG00000015248) #37	HOGA1 (ENSCHIG00000018410)
Bovinae	ANCESTRAL SPECIES	22	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889.j #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Bos	ANCESTRAL SPECIES	23	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889.j #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741.d #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Bos_a	ANCESTRAL SPECIES	17	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889.j #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741.d #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Domestic yak	MODERN SPECIES	17	ENSBGRG00000024209	PKD2L1 (ENSBGRG00000024114)	BLOC1S2 (ENSBGRG00000024074) #7	CWF19L1 (ENSBGRG00000023954) #8	CHUK (ENSBGRG00000023732) #9	ERLIN1 (ENSBGRG00000023679) #10	ENSBGRG00000023587	CPN1 (ENSBGRG00000023508) #12	DNMBP (ENSBGRG00000023150) #13	ABCC2 (ENSBGRG00000022859) #15	CUTC (ENSBGRG00000022756) #16	COX15 (ENSBGRG00000022480) #17	ENTPD7 (ENSBGRG00000022394) #18	SLC25A28 (ENSBGRG00000022344) #19	NKX2-3 (ENSBGRG00000022317) #20	GOT1 (ENSBGRG00000022227) #22	CNNM1 (ENSBGRG00000021985) #23	ENSBGRG00000021941	HPSE2 (ENSBGRG00000021306) #26	HPS1 (ENSBGRG00000020843) #27	PYROXD2 (ENSBGRG00000020702)	LOXL4 (ENSBGRG00000020559) #28	ENSBGRG00000020536	ENSBGRG00000020483 #29	CRTAC1 (ENSBGRG00000020315) #30	GOLGA7B (ENSBGRG00000020042) #31	SFRP5 (ENSBGRG00000019974) #32	ZFYVE27 (ENSBGRG00000019044) #33	MARVELD1 (ENSBGRG00000018953) #34	AVPI1 (ENSBGRG00000018935) #35	PI4K2A (ENSBGRG00000018890) #36
Wild yak	MODERN SPECIES	459	SCD (ENSBMUG00000017541)	PKD2L1 (ENSBMUG00000017631)	BLOC1S2 (ENSBMUG00000017651) #7	CWF19L1 (ENSBMUG00000017670) #8	CHUK (ENSBMUG00000017775) #9	ERLIN1 (ENSBMUG00000017806) #10	ENSBMUG00000017924	CPN1 (ENSBMUG00000018051) #12	DNMBP (ENSBMUG00000018089) #13	ABCC2 (ENSBMUG00000018169) #15	CUTC (ENSBMUG00000018195) #16	COX15 (ENSBMUG00000018209) #17	ENTPD7 (ENSBMUG00000018228) #18	SLC25A28 (ENSBMUG00000018239) #19	NKX2-3 (ENSBMUG00000018255) #20	GOT1 (ENSBMUG00000018263) #22	CNNM1 (ENSBMUG00000018287) #23	ENSBMUG00000018304 #26
Bos_b	ANCESTRAL SPECIES	23	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889.j #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741.d #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Cow	MODERN SPECIES	18	ENSBTAG00000027715	PKD2L1 (ENSBTAG00000010742)	BLOC1S2 (ENSBTAG00000010739) #7	CWF19L1 (ENSBTAG00000007594) #8	CHUK (ENSBTAG00000007591) #9	ERLIN1 (ENSBTAG00000007588) #10	CYP2C23 (ENSBTAG00000023939)	CPN1 (ENSBTAG00000023941) #12	DNMBP (ENSBTAG00000008939) #13	ABCC2 (ENSBTAG00000008936) #15	CUTC (ENSBTAG00000002971) #16	COX15 (ENSBTAG00000045703) #17	ENTPD7 (ENSBTAG00000047077) #18	SLC25A28 (ENSBTAG00000012107) #19	NKX2-3 (ENSBTAG00000021397) #20	GOT1 (ENSBTAG00000011960) #22	CNNM1 (ENSBTAG00000011956) #23	ENSBTAG00000050951 #26	ENSBTAG00000052639	HPSE2 (ENSBTAG00000054120) #26	HPS1 (ENSBTAG00000014314) #27	PYROXD2 (ENSBTAG00000014313)	LOXL4 (ENSBTAG00000020895) #28	R3HCC1L (ENSBTAG00000021856) #29	CRTAC1 (ENSBTAG00000008102) #30	GOLGA7B (ENSBTAG00000008100) #31	SFRP5 (ENSBTAG00000018566) #32	ZFYVE27 (ENSBTAG00000018564) #33	MARVELD1 (ENSBTAG00000013478) #34	AVPI1 (ENSBTAG00000023947) #35	PI4K2A (ENSBTAG00000002010) #36
Hybrid Bos Indicus	MODERN SPECIES	18	ENSBIXG00005011185	ENSBIXG00005001032	ENSBIXG00005011167 #7	CWF19L1 (ENSBIXG00005001023) #8	CHUK (ENSBIXG00005011090) #9	ERLIN1 (ENSBIXG00005001006) #10	ENSBIXG00005010965	CPN1 (ENSBIXG00005000570) #12	DNMBP (ENSBIXG00005010920) #13	ABCC2 (ENSBIXG00005000623) #15	CUTC (ENSBIXG00005000919) #16	COX15 (ENSBIXG00005010651) #17	ENTPD7 (ENSBIXG00005010635) #18	SLC25A28 (ENSBIXG00005010613) #19	NKX2-3 (ENSBIXG00005010599) #20	GOT1 (ENSBIXG00005000692) #22	CNNM1 (ENSBIXG00005006993) #23	HPSE2 (ENSBIXG00005010419) #26	HPS1 (ENSBIXG00005000811) #27	PYROXD2 (ENSBIXG00005010212)	LOXL4 (ENSBIXG00005010186) #28	R3HCC1L (ENSBIXG00005010153) #29	ENSBIXG00005010106	CRTAC1 (ENSBIXG00005010075) #30	ZFYVE27 (ENSBIXG00005000645) #33	SFRP5 (ENSBIXG00005009770) #32	PI4K2A (ENSBIXG00005006986) #36	AVPI1 (ENSBIXG00005009706) #35	MORN4 (ENSBIXG00005000550) #37	HOGA1 (ENSBIXG00005009628)	ANKRD2 (ENSBIXG00005009522)
American bison	MODERN SPECIES	3316	SCD (ENSBBBG00000020991)	PKD2L1 (ENSBBBG00000020976)	BLOC1S2 (ENSBBBG00000006915) #7	CWF19L1 (ENSBBBG00000020870) #8	CHUK (ENSBBBG00000005609) #9	ERLIN1 (ENSBBBG00000020806) #10	ENSBBBG00000020764	CPN1 (ENSBBBG00000020710) #12	DNMBP (ENSBBBG00000008616) #13	ABCC2 (ENSBBBG00000020631) #15	CUTC (ENSBBBG00000020570) #16	COX15 (ENSBBBG00000020431) #17	ENTPD7 (ENSBBBG00000007516) #18	SLC25A28 (ENSBBBG00000000522) #19	NKX2-3 (ENSBBBG00000000532) #20	GOT1 (ENSBBBG00000000537) #22	CNNM1 (ENSBBBG00000000548) #23	ENSBBBG00000000558 #26
Siberian musk deer	MODERN SPECIES	1162	SCD (ENSMMSG00000018540)	PKD2L1 (ENSMMSG00000018586)	ENSMMSG00000018776 #7	CWF19L1 (ENSMMSG00000018813) #8	ENSMMSG00000018864 #9	ERLIN1 (ENSMMSG00000018996) #10	ENSMMSG00000019076	CPN1 (ENSMMSG00000019165) #12	DNMBP (ENSMMSG00000019235) #13	ABCC2 (ENSMMSG00000019363) #15	CUTC (ENSMMSG00000019530) #16	COX15 (ENSMMSG00000019557) #17	ENTPD7 (ENSMMSG00000019589) #18	SLC25A28 (ENSMMSG00000019614) #19	NKX2-3 (ENSMMSG00000019646) #20	GOT1 (ENSMMSG00000019669) #22	CNNM1 (ENSMMSG00000019701) #23	ENSMMSG00000019749 #26
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	6	BLOC1S2 (ENSCHYG00000006943) #7	CWF19L1 (ENSCHYG00000006851) #8	ENSCHYG00000006832	CHUK (ENSCHYG00000006784) #9	ERLIN1 (ENSCHYG00000006724) #10	ENSCHYG00000006656	CPN1 (ENSCHYG00000006610) #12	DNMBP (ENSCHYG00000006445) #13	ABCC2 (ENSCHYG00000006324) #15	ENSCHYG00000006294	CUTC (ENSCHYG00000006242) #16	COX15 (ENSCHYG00000006179) #17	ENTPD7 (ENSCHYG00000006056) #18	SLC25A28 (ENSCHYG00000006008) #19	NKX2-3 (ENSCHYG00000005991) #20	ENSCHYG00000005946 #22	CNNM1 (ENSCHYG00000005721) #23	HPSE2 (ENSCHYG00000005569) #26	HPS1 (ENSCHYG00000005361) #27	PYROXD2 (ENSCHYG00000005123)	ENSCHYG00000005075	LOXL4 (ENSCHYG00000005041) #28	R3HCC1L (ENSCHYG00000004994) #29	CRTAC1 (ENSCHYG00000004903) #30	ENSCHYG00000004880	SFRP5 (ENSCHYG00000004868) #32	ZFYVE27 (ENSCHYG00000004712) #33	MARVELD1 (ENSCHYG00000004459) #34	AVPI1 (ENSCHYG00000004424) #35	PI4K2A (ENSCHYG00000021371) #36	MORN4 (ENSCHYG00000021303) #37
Yarkand deer	MODERN SPECIES	6	ENSCHYG00000006068	TET1 (ENSCHYG00000005993)	SLC25A16 (ENSCHYG00000005961)	DNA2 (ENSCHYG00000005873)	ENSCHYG00000005831	RUFY2 (ENSCHYG00000005352)	HNRNPH3 (ENSCHYG00000005187)	PBLD (ENSCHYG00000026547)	ATOH7 (ENSCHYG00000026539)	MYPN (ENSCHYG00000026483)	HERC4 (ENSCHYG00000026123)	SIRT1 (ENSCHYG00000026011)	DNAJC12 (ENSCHYG00000025961)	LRRTM3 (ENSCHYG00000025928)	CTNNA3 (ENSCHYG00000025898)	ENSCHYG00000025886 #22	REEP3 (ENSCHYG00000025849)	JMJD1C (ENSCHYG00000025503)	ENSCHYG00000025450	EGR2 (ENSCHYG00000025433)	ADO (ENSCHYG00000025417)	ZNF365 (ENSCHYG00000025396)	ENSCHYG00000025380 #25	RTKN2 (ENSCHYG00000025340)	ARID5B (ENSCHYG00000025278)	ENSCHYG00000025249	ENSCHYG00000025219	ENSCHYG00000025136	ENSCHYG00000025085	ENSCHYG00000025062	ENSCHYG00000023912
Camelidae	ANCESTRAL SPECIES	4	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Alpaca	MODERN SPECIES	3455										CPN1 (ENSVPAG00000005013) #12	DNMBP (ENSVPAG00000005006) #13	ABCC2 (ENSVPAG00000005004) #15	CUTC (ENSVPAG00000005003) #16	COX15 (ENSVPAG00000005001) #17	ENTPD7 (ENSVPAG00000005000) #18	GOT1 (ENSVPAG00000004999) #22	CNNM1 (ENSVPAG00000004998) #23	HPSE2 (ENSVPAG00000004997) #26	ENSVPAG00000004996 #27
Arabian camel	MODERN SPECIES	2	SCD (ENSCDRG00005019165)	PKD2L1 (ENSCDRG00005019183)	BLOC1S2 (ENSCDRG00005019254) #7	CWF19L1 (ENSCDRG00005019282) #8	CHUK (ENSCDRG00005019321) #9	ERLIN1 (ENSCDRG00005019412) #10	ENSCDRG00005019453	CPN1 (ENSCDRG00005003276) #12	DNMBP (ENSCDRG00005003309) #13	ABCC2 (ENSCDRG00005003408) #15	CUTC (ENSCDRG00005003453) #16	COX15 (ENSCDRG00005003507) #17	ENTPD7 (ENSCDRG00005003625) #18	SLC25A28 (ENSCDRG00005003655) #19	NKX2-3 (ENSCDRG00005003725) #20	GOT1 (ENSCDRG00005003760) #22	CNNM1 (ENSCDRG00005003816) #23	HPSE2 (ENSCDRG00005003939) #26	HPS1 (ENSCDRG00005004078) #27	PYROXD2 (ENSCDRG00005004408)	LOXL4 (ENSCDRG00005004555) #28	R3HCC1L (ENSCDRG00005004585) #29	CRTAC1 (ENSCDRG00005004684) #30	GOLGA7B (ENSCDRG00005004929) #31	SFRP5 (ENSCDRG00005004990) #32	ZFYVE27 (ENSCDRG00005005050) #33	MARVELD1 (ENSCDRG00005005688) #34	AVPI1 (ENSCDRG00005005710) #35	PI4K2A (ENSCDRG00005005722) #36	MORN4 (ENSCDRG00005005757) #37	HOGA1 (ENSCDRG00005005801)
Laurasiatheria_b	ANCESTRAL SPECIES	15	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Laurasiatheria_c	ANCESTRAL SPECIES	15	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Chiroptera	ANCESTRAL SPECIES	6	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Microchiroptera	ANCESTRAL SPECIES	5	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Microbat	MODERN SPECIES	1003							DNMBP (ENSMLUG00000012676) #13	ABCC2 (ENSMLUG00000013008) #15	ENSMLUG00000010337	ENSMLUG00000023141	CUTC (ENSMLUG00000013004) #16	COX15 (ENSMLUG00000012997) #17	ENTPD7 (ENSMLUG00000012990) #18	SLC25A28 (ENSMLUG00000003248) #19	NKX2-3 (ENSMLUG00000012413) #20	GOT1 (ENSMLUG00000007333) #22	CNNM1 (ENSMLUG00000007307) #23	ENSMLUG00000026702 #26	ENSMLUG00000007302	ENSMLUG00000007280 #26	HPS1 (ENSMLUG00000007252) #27	PYROXD2 (ENSMLUG00000007227)	LOXL4 (ENSMLUG00000000434) #28	R3HCC1L (ENSMLUG00000000430) #29	ENSMLUG00000023911	CRTAC1 (ENSMLUG00000015981) #30	GOLGA7B (ENSMLUG00000015977) #31	SFRP5 (ENSMLUG00000025702) #32	ZFYVE27 (ENSMLUG00000009377) #33	AVPI1 (ENSMLUG00000028157) #35	PI4K2A (ENSMLUG00000028240) #36
Greater horseshoe bat	MODERN SPECIES	7	PKD2L1 (ENSRFEG00010008124)	BLOC1S2 (ENSRFEG00010008151) #7	CWF19L1 (ENSRFEG00010008209) #8	CHUK (ENSRFEG00010008270) #9	ERLIN1 (ENSRFEG00010008321) #10	ENSRFEG00010008364	CPN1 (ENSRFEG00010008391) #12	DNMBP (ENSRFEG00010008477) #13	ABCC2 (ENSRFEG00010008701) #15	CUTC (ENSRFEG00010008821) #16	COX15 (ENSRFEG00010008880) #17	ENTPD7 (ENSRFEG00010008932) #18	ENSRFEG00010008955	SLC25A28 (ENSRFEG00010008966) #19	NKX2-3 (ENSRFEG00010009017) #20	GOT1 (ENSRFEG00010009053) #22	CNNM1 (ENSRFEG00010009120) #23	HPSE2 (ENSRFEG00010009250) #26	HPS1 (ENSRFEG00010009844) #27	PYROXD2 (ENSRFEG00010009945)	LOXL4 (ENSRFEG00010010101) #28	R3HCC1L (ENSRFEG00010010169) #29	CRTAC1 (ENSRFEG00010010283) #30	ENSRFEG00010010438	GOLGA7B (ENSRFEG00010010476) #31	SFRP5 (ENSRFEG00010010565) #32	ZFYVE27 (ENSRFEG00010010662) #33	MARVELD1 (ENSRFEG00010011202) #34	AVPI1 (ENSRFEG00010011224) #35	PI4K2A (ENSRFEG00010011240) #36	MORN4 (ENSRFEG00010011280) #37
Megabat	MODERN SPECIES	193															NKX2-3 (ENSPVAG00000008891) #20	GOT1 (ENSPVAG00000008890) #22	CNNM1 (ENSPVAG00000008889) #23
Equus	ANCESTRAL SPECIES	9	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Donkey	MODERN SPECIES	11	BLOC1S2 (ENSEASG00005035216) #7	CWF19L1 (ENSEASG00005009032) #8	CHUK (ENSEASG00005009284) #9	ERLIN1 (ENSEASG00005009396) #10	ENSEASG00005026076	ENSEASG00005009611	CPN1 (ENSEASG00005009613) #12	DNMBP (ENSEASG00005009614) #13	ABCC2 (ENSEASG00005009680) #15	CUTC (ENSEASG00005010008) #16	COX15 (ENSEASG00005010011) #17	ENTPD7 (ENSEASG00005010015) #18	SLC25A28 (ENSEASG00005036136) #19	ENSEASG00005010107	NKX2-3 (ENSEASG00005010109) #20	GOT1 (ENSEASG00005010111) #22	CNNM1 (ENSEASG00005010116) #23	HPSE2 (ENSEASG00005008341) #26	ENSEASG00005007924	HPS1 (ENSEASG00005008377) #27	PYROXD2 (ENSEASG00005008622)	LOXL4 (ENSEASG00005008627) #28	R3HCC1L (ENSEASG00005008634) #29	CRTAC1 (ENSEASG00005008642) #30	GOLGA7B (ENSEASG00005008652) #31	SFRP5 (ENSEASG00005027560) #32	ZFYVE27 (ENSEASG00005008657) #33	MARVELD1 (ENSEASG00005008661) #34	AVPI1 (ENSEASG00005008664) #35	PI4K2A (ENSEASG00005008665) #36	MORN4 (ENSEASG00005034389) #37
Horse	MODERN SPECIES		PKD2L1 (ENSECAG00000023606)	BLOC1S2 (ENSECAG00000013421) #7	CWF19L1 (ENSECAG00000016333) #8	CHUK (ENSECAG00000006588) #9	ERLIN1 (ENSECAG00000043715) #10	CYP2C23 (ENSECAG00000024865)	ENSECAG00000049976	CPN1 (ENSECAG00000024087) #12	DNMBP (ENSECAG00000010813) #13	ABCC2 (ENSECAG00000019828) #15	CUTC (ENSECAG00000006891) #16	COX15 (ENSECAG00000014039) #17	ENTPD7 (ENSECAG00000020147) #18	SLC25A28 (ENSECAG00000009356) #19	NKX2-3 (ENSECAG00000000092) #20	GOT1 (ENSECAG00000000095) #22	CNNM1 (ENSECAG00000000257) #23	HPSE2 (ENSECAG00000000353) #26	ENSECAG00000009538	ENSECAG00000058422 ##25	HPS1 (ENSECAG00000000393) #27	PYROXD2 (ENSECAG00000003748)	R3HCC1L (ENSECAG00000006861) #29	LOXL4 (ENSECAG00000005573) #28	CRTAC1 (ENSECAG00000007097) #30	GOLGA7B (ENSECAG00000007985) #31	SFRP5 (ENSECAG00000026876) #32	ZFYVE27 (ENSECAG00000008070) #33	MARVELD1 (ENSECAG00000035735) #34	AVPI1 (ENSECAG00000008293) #35	PI4K2A (ENSECAG00000008327) #36
Carnivora	ANCESTRAL SPECIES	16	ENSGT00940000160584	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Caniformia	ANCESTRAL SPECIES	13	ENSGT00940000160584	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Caniformia_b	ANCESTRAL SPECIES	10	ENSGT00940000160584	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Ursidae	ANCESTRAL SPECIES	5	ENSGT00940000160584	ENSGT00940000154908.d	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000015060.e.b.a	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Ursus	ANCESTRAL SPECIES	7	ENSGT00940000160584	ENSGT00940000154908.d	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000015060.e.b.a	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Polar bear	MODERN SPECIES	92	SEC31B (ENSUMAG00000022806)	SCD (ENSUMAG00000022802)	PKD2L1 (ENSUMAG00000022795)	BLOC1S2 (ENSUMAG00000022792) #7	CWF19L1 (ENSUMAG00000022786) #8	CHUK (ENSUMAG00000022784) #9	ERLIN1 (ENSUMAG00000022782) #10	CPN1 (ENSUMAG00000022776) #12	DNMBP (ENSUMAG00000022748) #13	ENSUMAG00000022738	ABCC2 (ENSUMAG00000022691) #15	CUTC (ENSUMAG00000022679) #16	COX15 (ENSUMAG00000022676) #17	ENTPD7 (ENSUMAG00000022662) #18	SLC25A28 (ENSUMAG00000022646) #19	GOT1 (ENSUMAG00000022640) #22	ENSUMAG00000022637 #23	ENSUMAG00000022634 #26	ENSUMAG00000022632	ENSUMAG00000022628	ENSUMAG00000022623 #26	HPS1 (ENSUMAG00000022592) #27	PYROXD2 (ENSUMAG00000022551)	LOXL4 (ENSUMAG00000022540) #28	R3HCC1L (ENSUMAG00000022536) #29	CRTAC1 (ENSUMAG00000022534) #30	GOLGA7B (ENSUMAG00000022532) #31	ZFYVE27 (ENSUMAG00000022526) #33	AVPI1 (ENSUMAG00000022522) #35	PI4K2A (ENSUMAG00000022461) #36	MORN4 (ENSUMAG00000022435) #37
American black bear	MODERN SPECIES	953								DNMBP (ENSUAMG00000024205) #13	ENSUAMG00000024203	ABCC2 (ENSUAMG00000024202) #15	CUTC (ENSUAMG00000024201) #16	COX15 (ENSUAMG00000024200) #17	ENTPD7 (ENSUAMG00000024199) #18	SLC25A28 (ENSUAMG00000024196) #19	NKX2-3 (ENSUAMG00000024195) #20	GOT1 (ENSUAMG00000024194) #22	ENSUAMG00000024193 #23
Giant Panda	MODERN SPECIES	16	SCD (ENSAMEG00000006735)	PKD2L1 (ENSAMEG00000006758)	BLOC1S2 (ENSAMEG00000006802) #7	CWF19L1 (ENSAMEG00000006811) #8	CHUK (ENSAMEG00000006839) #9	ENSAMEG00000006951 #10	ENSAMEG00000029309	DNMBP (ENSAMEG00000006999) #13	ENSAMEG00000024466	ABCC2 (ENSAMEG00000007018) #15	CUTC (ENSAMEG00000007211) #16	COX15 (ENSAMEG00000007219) #17	ENTPD7 (ENSAMEG00000007233) #18	SLC25A28 (ENSAMEG00000007268) #19	NKX2-3 (ENSAMEG00000029439) #20	GOT1 (ENSAMEG00000003623) #22	CNNM1 (ENSAMEG00000025498) #23	ENSAMEG00000030373	HPSE2 (ENSAMEG00000000060) #26	HPS1 (ENSAMEG00000000061) #27	PYROXD2 (ENSAMEG00000000072)	LOXL4 (ENSAMEG00000000074) #28	R3HCC1L (ENSAMEG00000000078) #29	GOLGA7B (ENSAMEG00000000088) #31	CRTAC1 (ENSAMEG00000000081) #30	SFRP5 (ENSAMEG00000000089) #32	ZFYVE27 (ENSAMEG00000000090) #33	MARVELD1 (ENSAMEG00000000095) #34	ENSAMEG00000000096 #35	PI4K2A (ENSAMEG00000000097) #36	MORN4 (ENSAMEG00000000101) #37
Mustelinae	ANCESTRAL SPECIES	29	ENSGT00940000160584	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
American mink	MODERN SPECIES	25	SCD (ENSNVIG00000018947)	PKD2L1 (ENSNVIG00000018963)	BLOC1S2 (ENSNVIG00000018993) #7	CWF19L1 (ENSNVIG00000019007) #8	CHUK (ENSNVIG00000019034) #9	ERLIN1 (ENSNVIG00000019050) #10	CPN1 (ENSNVIG00000019110) #12	DNMBP (ENSNVIG00000019147) #13	ABCC2 (ENSNVIG00000019248) #15	ENSNVIG00000019358	CUTC (ENSNVIG00000019369) #16	COX15 (ENSNVIG00000019404) #17	ENTP7 (ENSNVIG00000019452) #18	SLC25A28 (ENSNVIG00000019475) #19	NKX2-3 (ENSNVIG00000019485) #20	GOT1 (ENSNVIG00000019493) #22	CNNM1 (ENSNVIG00000019501) #23	HPSE2 (ENSNVIG00000019528) #26	ENSNVIG00000019609	HPS1 (ENSNVIG00000019617) #27	PYROXD2 (ENSNVIG00000019708)	LOXL4 (ENSNVIG00000019721) #28	R3HCC1L (ENSNVIG00000019732) #29	CRTAC1 (ENSNVIG00000019780) #30	GOLGA7B (ENSNVIG00000019876) #31	SFRP5 (ENSNVIG00000019893) #32	ZFYVE27 (ENSNVIG00000019905) #33	MARVELD1 (ENSNVIG00000019972) #34	AVPI1 (ENSNVIG00000019986) #35	PI4K2A (ENSNVIG00000020017) #36	MORN4 (ENSNVIG00000020040) #37
Ferret	MODERN SPECIES	187	ENSMPUG00000016974	BLOC1S2 (ENSMPUG00000016975) #7	CWF19L1 (ENSMPUG00000016977) #8	CHUK (ENSMPUG00000016978) #9	ERLIN1 (ENSMPUG00000016979) #10	CPN1 (ENSMPUG00000016982) #12	DNMBP (ENSMPUG00000016984) #13	ABCC2 (ENSMPUG00000016985) #15	CUTC (ENSMPUG00000016986) #16	COX15 (ENSMPUG00000016987) #17	ENTPD7 (ENSMPUG00000016988) #18	SLC25A28 (ENSMPUG00000016989) #19	ENSMPUG00000016991	NKX2-3 (ENSMPUG00000016992) #20	ENSMPUG00000016995	GOT1 (ENSMPUG00000016996) #22	CNNM1 (ENSMPUG00000016997) #23	ENSMPUG00000016998 #26	HPSE2 (ENSMPUG00000016999) #26	HPS1 (ENSMPUG00000017000) #27	PYROXD2 (ENSMPUG00000017020)	LOXL4 (ENSMPUG00000017023) #28	R3HCC1L (ENSMPUG00000017025) #29	CRTAC1 (ENSMPUG00000017026) #30	GOLGA7B (ENSMPUG00000017027) #31	ENSMPUG00000017031	ZFYVE27 (ENSMPUG00000017032) #33	SFRP5 (ENSMPUG00000017033) #32	AVPI1 (ENSMPUG00000017034) #35	PI4K2A (ENSMPUG00000017036) #36	MORN4 (ENSMPUG00000017037) #37
Canidae	ANCESTRAL SPECIES	16	ENSGT00940000160584	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872.b #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Canis_lupus	ANCESTRAL SPECIES	20	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00940000162741.j.l.b.b	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049.i #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872.b #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Dog	MODERN SPECIES	20	PKD2L1 (ENSCAFG00845016477)	BLOC1S2 (ENSCAFG00845016389) #7	CWF19L1 (ENSCAFG00845016322) #8	CHUK (ENSCAFG00845016257) #9	ERLIN1 (ENSCAFG00845016181) #10	CPN1 (ENSCAFG00845016127) #12	ENSCAFG00845016095	DNMBP (ENSCAFG00845030948) #13	ABCC2 (ENSCAFG00845030901) #15	ENSCAFG00845030866	CUTC (ENSCAFG00845030834) #16	COX15 (ENSCAFG00845030808) #17	ENTPD7 (ENSCAFG00845030797) #18	SLC25A28 (ENSCAFG00845030792) #19	NKX2-3 (ENSCAFG00845030787) #20	GOT1 (ENSCAFG00845030772) #22	CNNM1 (ENSCAFG00845030755) #23	HPSE2 (ENSCAFG00845030674) #26	HPS1 (ENSCAFG00845030620) #27	ENSCAFG00845030609	PYROXD2 (ENSCAFG00845030554)	LOXL4 (ENSCAFG00845030491) #28	R3HCC1L (ENSCAFG00845030456) #29	GOLGA7B (ENSCAFG00845030415) #31	CRTAC1 (ENSCAFG00845030290) #30	SFRP5 (ENSCAFG00845030226) #32	ZFYVE27 (ENSCAFG00845030149) #33	MARVELD1 (ENSCAFG00845030060) #34	ENSCAFG00845030048 #35	PI4K2A (ENSCAFG00845029994) #36	MORN4 (ENSCAFG00845029947) #37
Dingo	MODERN SPECIES	165	PKD2L1 (ENSCAFG00020008288)	BLOC1S2 (ENSCAFG00020008279) #7	CWF19L1 (ENSCAFG00020008275) #8	CHUK (ENSCAFG00020007624) #9	ERLIN1 (ENSCAFG00020007585) #10	CPN1 (ENSCAFG00020007578) #12	ENSCAFG00020007576	DNMBP (ENSCAFG00020007574) #13	ABCC2 (ENSCAFG00020007504) #15	ENSCAFG00020007494	CUTC (ENSCAFG00020007478) #16	COX15 (ENSCAFG00020007471) #17	ENTPD7 (ENSCAFG00020007458) #18	SLC25A28 (ENSCAFG00020007452) #19	NKX2-3 (ENSCAFG00020007443) #20	GOT1 (ENSCAFG00020007440) #22	CNNM1 (ENSCAFG00020007396) #23	ENSCAFG00020007369 #26	HPSE2 (ENSCAFG00020007338) #26	HPS1 (ENSCAFG00020006365) #27	PYROXD2 (ENSCAFG00020006321)	LOXL4 (ENSCAFG00020006249) #28	R3HCC1L (ENSCAFG00020006245) #29	CRTAC1 (ENSCAFG00020006114) #30	GOLGA7B (ENSCAFG00020006112) #31	SFRP5 (ENSCAFG00020006107) #32	ZFYVE27 (ENSCAFG00020006105) #33	MARVELD1 (ENSCAFG00020006102) #34	ENSCAFG00020006100 #35	PI4K2A (ENSCAFG00020006060) #36	MORN4 (ENSCAFG00020006048) #37
Red fox	MODERN SPECIES		BLOC1S2 (ENSVVUG00000024915) #7	CWF19L1 (ENSVVUG00000024848) #8	CHUK (ENSVVUG00000024844) #9	ERLIN1 (ENSVVUG00000024839) #10	ENSVVUG00000024837	CPN1 (ENSVVUG00000024833) #12	ENSVVUG00000024832	DNMBP (ENSVVUG00000024611) #13	ABCC2 (ENSVVUG00000023522) #15	ENSVVUG00000023442	CUTC (ENSVVUG00000023417) #16	COX15 (ENSVVUG00000023414) #17	ENTPD7 (ENSVVUG00000023409) #18	SLC25A28 (ENSVVUG00000023405) #19	NKX2-3 (ENSVVUG00000023404) #20	GOT1 (ENSVVUG00000023396) #22	CNNM1 (ENSVVUG00000023380) #23	ENSVVUG00000023377 #26	HPSE2 (ENSVVUG00000023366) #26	HPS1 (ENSVVUG00000023341) #27	PYROXD2 (ENSVVUG00000023335)	LOXL4 (ENSVVUG00000023322) #28	R3HCC1L (ENSVVUG00000023317) #29	CRTAC1 (ENSVVUG00000023277) #30	SFRP5 (ENSVVUG00000023267) #32	ZFYVE27 (ENSVVUG00000023261) #33	MARVELD1 (ENSVVUG00000023256) #34	AVPI1 (ENSVVUG00000023255) #35	PI4K2A (ENSVVUG00000023252) #36	MORN4 (ENSVVUG00000023247) #37	C10orf62 (ENSVVUG00000023240)
Felidae	ANCESTRAL SPECIES	14	ENSGT00940000160584	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Panthera	ANCESTRAL SPECIES	8	ENSGT00940000160584	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Tiger	MODERN SPECIES	136	SEC31B (ENSPTIG00000012634)	SCD (ENSPTIG00000012317)	PKD2L1 (ENSPTIG00000011355)	BLOC1S2 (ENSPTIG00000010062) #7	CWF19L1 (ENSPTIG00000009695) #8	CHUK (ENSPTIG00000007746) #9	ERLIN1 (ENSPTIG00000006952) #10	CPN1 (ENSPTIG00000006187) #12	DNMBP (ENSPTIG00000000911) #13	ABCC2 (ENSPTIG00000021926) #15	CUTC (ENSPTIG00000021839) #16	COX15 (ENSPTIG00000021530) #17	ENTPD7 (ENSPTIG00000021486) #18	SLC25A28 (ENSPTIG00000020921) #19	NKX2-3 (ENSPTIG00000020694) #20	GOT1 (ENSPTIG00000020444) #22	CNNM1 (ENSPTIG00000018523) #23	HPSE2 (ENSPTIG00000013671) #26	HPS1 (ENSPTIG00000008067) #27	PYROXD2 (ENSPTIG00000007293)	LOXL4 (ENSPTIG00000006871) #28	ENSPTIG00000005720 #29	CRTAC1 (ENSPTIG00000021313) #30	GOLGA7B (ENSPTIG00000020956) #31	ZFYVE27 (ENSPTIG00000018038) #33	AVPI1 (ENSPTIG00000017197) #35	PI4K2A (ENSPTIG00000016813) #36	MORN4 (ENSPTIG00000015742) #37	C10orf62 (ENSPTIG00000015070)	HOGA1 (ENSPTIG00000014480)	ANKRD2 (ENSPTIG00000012729)
Panthera_a	ANCESTRAL SPECIES	9	ENSGT00940000160584	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
lion	MODERN SPECIES	11	WNT8B (ENSPLOG00000006038)	SCD (ENSPLOG00000006063)	PKD2L1 (ENSPLOG00000006098)	BLOC1S2 (ENSPLOG00000006186) #7	CWF19L1 (ENSPLOG00000006219) #8	CHUK (ENSPLOG00000006290) #9	ERLIN1 (ENSPLOG00000006354) #10	CPN1 (ENSPLOG00000006378) #12	DNMBP (ENSPLOG00000006463) #13	ABCC2 (ENSPLOG00000006642) #15	CUTC (ENSPLOG00000006732) #16	COX15 (ENSPLOG00000006773) #17	ENTPD7 (ENSPLOG00000006821) #18	SLC25A28 (ENSPLOG00000006856) #19	NKX2-3 (ENSPLOG00000006875) #20	GOT1 (ENSPLOG00000006894) #22	CNNM1 (ENSPLOG00000006934) #23	HPSE2 (ENSPLOG00000007079) #26	HPS1 (ENSPLOG00000007321) #27	PYROXD2 (ENSPLOG00000007348)	LOXL4 (ENSPLOG00000007390) #28	R3HCC1L (ENSPLOG00000007438) #29	CRTAC1 (ENSPLOG00000007504) #30	GOLGA7B (ENSPLOG00000007655) #31	SFRP5 (ENSPLOG00000007685) #32	ZFYVE27 (ENSPLOG00000007744) #33	MARVELD1 (ENSPLOG00000007915) #34	AVPI1 (ENSPLOG00000007926) #35	PI4K2A (ENSPLOG00000007948) #36	MORN4 (ENSPLOG00000007986) #37	HOGA1 (ENSPLOG00000008038)
leopard	MODERN SPECIES	33	WNT8B (ENSPPRG00000001818)	SCD (ENSPPRG00000001976)	PKD2L1 (ENSPPRG00000003539)	BLOC1S2 (ENSPPRG00000005194) #7	CWF19L1 (ENSPPRG00000005516) #8	CHUK (ENSPPRG00000005992) #9	ERLIN1 (ENSPPRG00000006192) #10	CPN1 (ENSPPRG00000008460) #12	DNMBP (ENSPPRG00000009541) #13	ABCC2 (ENSPPRG00000010266) #15	CUTC (ENSPPRG00000016037) #16	COX15 (ENSPPRG00000018767) #17	ENTPD7 (ENSPPRG00000024664) #18	SLC25A28 (ENSPPRG00000024601) #19	NKX2-3 (ENSPPRG00000024447) #20	GOT1 (ENSPPRG00000024393) #22	CNNM1 (ENSPPRG00000024142) #23	HPSE2 (ENSPPRG00000000250) #26	HPS1 (ENSPPRG00000000907) #27	PYROXD2 (ENSPPRG00000001210)	LOXL4 (ENSPPRG00000001920) #28	ENSPPRG00000002263 #29	CRTAC1 (ENSPPRG00000003319) #30	GOLGA7B (ENSPPRG00000003605) #31	SFRP5 (ENSPPRG00000004042) #32	ZFYVE27 (ENSPPRG00000006534) #33	MARVELD1 (ENSPPRG00000021353) #34	AVPI1 (ENSPPRG00000007713) #35	PI4K2A (ENSPPRG00000007831) #36	MORN4 (ENSPPRG00000008387) #37	HOGA1 (ENSPPRG00000008700)
Cat	MODERN SPECIES	242	NDUFB8 (ENSFCAG00000041098)	SEC31B (ENSFCAG00000006452)	WNT8B (ENSFCAG00000006451)	SCD (ENSFCAG00000031590)	PKD2L1 (ENSFCAG00000006445)	BLOC1S2 (ENSFCAG00000032495) #7	CWF19L1 (ENSFCAG00000010585) #8	CHUK (ENSFCAG00000004930) #9	ERLIN1 (ENSFCAG00000029825) #12	DNMBP (ENSFCAG00000014383) #13	ABCC2 (ENSFCAG00000014380) #15	COX15 (ENSFCAG00000014378) #17	ENTPD7 (ENSFCAG00000014376) #18	SLC25A28 (ENSFCAG00000045981) #19	NKX2-3 (ENSFCAG00000042789) #20	GOT1 (ENSFCAG00000028066) #22	CNNM1 (ENSFCAG00000014375) #23	HPSE2 (ENSFCAG00000046015) #26	HPS1 (ENSFCAG00000009348) #27	PYROXD2 (ENSFCAG00000009346)	LOXL4 (ENSFCAG00000009345) #28	R3HCC1L (ENSFCAG00000030301) #29	CRTAC1 (ENSFCAG00000013435) #30	SFRP5 (ENSFCAG00000038195) #32	ZFYVE27 (ENSFCAG00000013433) #33	MARVELD1 (ENSFCAG00000041291) #34	AVPI1 (ENSFCAG00000027156) #35	PI4K2A (ENSFCAG00000013431) #36	MORN4 (ENSFCAG00000028227) #37	HOGA1 (ENSFCAG00000024587)	ANKRD2 (ENSFCAG00000013428)
Eulipotyphla	ANCESTRAL SPECIES	1310																ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23
Hedgehog	MODERN SPECIES	2081																GOT1 (ENSEEUG00000011356) #22	ENSEEUG00000011285 #23
Common shrew	MODERN SPECIES	1488																GOT1 (ENSSARG00000012890) #22
Atlantogenata	ANCESTRAL SPECIES	10	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820
Afrotheria	ANCESTRAL SPECIES	4	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820	ENSGT00530000063604.A
Afrotheria_a	ANCESTRAL SPECIES	4	ENSGT00940000154908	ENSGT00940000157274	ENSGT00390000005889 #7	ENSGT00940000156000 #8	ENSGT00950000182937.A.a #9	ENSGT00390000014666.b #10	ENSGT00940000163402	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00390000015820	ENSGT00530000063604.A
Elephant	MODERN SPECIES	3	SCD (ENSLAFG00000017790)	PKD2L1 (ENSLAFG00000014984)	BLOC1S2 (ENSLAFG00000014979) #7	CWF19L1 (ENSLAFG00000014975) #8	CHUK (ENSLAFG00000014964) #9	ERLIN1 (ENSLAFG00000020642) #10	ENSLAFG00000021818	CPN1 (ENSLAFG00000009332) #12	DNMBP (ENSLAFG00000030951) #13	ABCC2 (ENSLAFG00000014342) #15	CUTC (ENSLAFG00000005938) #16	COX15 (ENSLAFG00000005937) #17	ENTPD7 (ENSLAFG00000005933) #18	SLC25A28 (ENSLAFG00000005821) #19	NKX2-3 (ENSLAFG00000014664) #20	GOT1 (ENSLAFG00000000163) #22	CNNM1 (ENSLAFG00000000165) #23	HPSE2 (ENSLAFG00000015101) #26	HPS1 (ENSLAFG00000000437) #27	PYROXD2 (ENSLAFG00000000434)	LOXL4 (ENSLAFG00000001421) #28	R3HCC1L (ENSLAFG00000001419) #29	CRTAC1 (ENSLAFG00000003369) #30	GOLGA7B (ENSLAFG00000003367) #31	SFRP5 (ENSLAFG00000013658) #32	ZFYVE27 (ENSLAFG00000013655) #33	AVPI1 (ENSLAFG00000022434) #35	PI4K2A (ENSLAFG00000010665) #36	MORN4 (ENSLAFG00000022767) #37	HOGA1 (ENSLAFG00000010660)	ANKRD2 (ENSLAFG00000010658)
Hyrax	MODERN SPECIES	1608																GOT1 (ENSPCAG00000004280) #22
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	1985																ENSETEG00000012333 #22	ENSETEG00000012330 #23
Tenrec	MODERN SPECIES	12898																ENSETEG00000003903 #22
Xenarthra	ANCESTRAL SPECIES	825											ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22
Armadillo	MODERN SPECIES	2387										ENSDNOG00000033119	CUTC (ENSDNOG00000015690) #16	COX15 (ENSDNOG00000000855) #17	ENTPD7 (ENSDNOG00000000852) #18	SLC25A28 (ENSDNOG00000045994) #19	NKX2-3 (ENSDNOG00000040342) #20	GOT1 (ENSDNOG00000033715) #22
Sloth	MODERN SPECIES	1798																GOT1 (ENSCHOG00000002242) #22
Marsupialia	ANCESTRAL SPECIES		ENSGT00570000079168.b.a	ENSGT00940000160819	ENSGT00390000003133	ENSGT00390000000854.c.b	ENSGT00390000000786	ENSGT00940000170293	ENSGT00940000163402.b.b	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT01000000220768	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00570000079168.b.a	ENSGT00940000160819	ENSGT00390000003133	ENSGT00390000000854.c.b	ENSGT00390000000786	ENSGT00940000170293	ENSGT00940000163402.b.b	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT01020000233779	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT01000000220768	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36
Diprotodontia	ANCESTRAL SPECIES	6	ENSGT01030000234528.A.a.b	ENSGT00570000079168.b.a	ENSGT00940000160819	ENSGT00390000003133	ENSGT00390000000854.c.b	ENSGT00390000000786	ENSGT00940000170293	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT01020000233779	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT01000000220768	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36
Diprotodontia_a	ANCESTRAL SPECIES	7	ENSGT01030000234528.A.a.b	ENSGT00570000079168.b.a	ENSGT00940000160819	ENSGT00390000003133	ENSGT00390000000854.c.b	ENSGT00390000000786	ENSGT00940000170293	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000161741 #15	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT01020000233779	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT01000000220768	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36
Common wonbat	MODERN SPECIES	39	ENSVURG00010016262	ENSVURG00010016268	SHLD2 (ENSVURG00010016292)	ENSVURG00010016326	ENSVURG00010016343	ADIRF (ENSVURG00010016356)	ENSVURG00010016364	CPN1 (ENSVURG00010016373) #12	DNMBP (ENSVURG00010016403) #13	ENSVURG00010016480 #15	CUTC (ENSVURG00010016519) #16	COX15 (ENSVURG00010016544) #17	ENTPD7 (ENSVURG00010016570) #18	SLC25A28 (ENSVURG00010016582) #19	NKX2-3 (ENSVURG00010016593) #20	GOT1 (ENSVURG00010016606) #22	CNNM1 (ENSVURG00010016618) #23	ENSVURG00010016643 #26	ENSVURG00010016657 #26	HPS1 (ENSVURG00010016677) #27	PYROXD2 (ENSVURG00010016717)	ENSVURG00010016743	LOXL4 (ENSVURG00010016749) #28	ENSVURG00010016755 #29	CRTAC1 (ENSVURG00010016779) #30	GOLGA7B (ENSVURG00010016801) #31	SFRP5 (ENSVURG00010016815) #32	ZFYVE27 (ENSVURG00010016841) #33	MARVELD1 (ENSVURG00010016976) #34	AVPI1 (ENSVURG00010016980) #35	PI4K2A (ENSVURG00010016985) #36
koala	MODERN SPECIES	65	ENSPCIG00000007961	ENSPCIG00000007964	ENSPCIG00000028408	SHLD2 (ENSPCIG00000028413)	ENSPCIG00000007968	ENSPCIG00000007973	ENSPCIG00000037354	ENSPCIG00000007979 #12	DNMBP (ENSPCIG00000014360) #13	ENSPCIG00000033203 #15	CUTC (ENSPCIG00000028280) #16	COX15 (ENSPCIG00000028278) #17	ENTPD7 (ENSPCIG00000028276) #18	SLC25A28 (ENSPCIG00000028275) #19	NKX2-3 (ENSPCIG00000032194) #20	GOT1 (ENSPCIG00000028267) #22	CNNM1 (ENSPCIG00000028265) #23	ENSPCIG00000028264 #26	ENSPCIG00000035242 #26	HPS1 (ENSPCIG00000021283) #27	PYROXD2 (ENSPCIG00000021262)	ENSPCIG00000021258	LOXL4 (ENSPCIG00000021256) #28	ENSPCIG00000035873 #29	ENSPCIG00000021252	CRTAC1 (ENSPCIG00000021225) #30	GOLGA7B (ENSPCIG00000036348) #31	SFRP5 (ENSPCIG00000034993) #32	ZFYVE27 (ENSPCIG00000002380) #33	MARVELD1 (ENSPCIG00000002363) #34	AVPI1 (ENSPCIG00000033102) #35
Wallaby	MODERN SPECIES	14130																ENSMEUG00000002994 #22
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000030087	ENSSHAG00000008523	ENSSHAG00000008667	ENSSHAG00000009424	ENSSHAG00000022709	ENSSHAG00000030063	ENSSHAG00000000782	ENSSHAG00000010622 #12	DNMBP (ENSSHAG00000011335) #13	ENSSHAG00000011765 #15	CUTC (ENSSHAG00000021965) #16	COX15 (ENSSHAG00000012385) #17	ENTPD7 (ENSSHAG00000012533) #18	SLC25A28 (ENSSHAG00000012792) #19	NKX2-3 (ENSSHAG00000013355) #20	GOT1 (ENSSHAG00000013995) #22	CNNM1 (ENSSHAG00000014170) #23	ENSSHAG00000014646 #26	ENSSHAG00000022698 #26	HPS1 (ENSSHAG00000016600) #27	PYROXD2 (ENSSHAG00000016671)	ENSSHAG00000023437	LOXL4 (ENSSHAG00000017119) #28	ENSSHAG00000026322 #29	CRTAC1 (ENSSHAG00000017544) #30	GOLGA7B (ENSSHAG00000028342) #31	SFRP5 (ENSSHAG00000017924) #32	ZFYVE27 (ENSSHAG00000017946) #33	MARVELD1 (ENSSHAG00000030010) #34	AVPI1 (ENSSHAG00000021027) #35	PI4K2A (ENSSHAG00000018035) #36
Opossum	MODERN SPECIES		ENSMODG00000002691	ENSMODG00000002697	ENSMODG00000002716	SHLD2 (ENSMODG00000002724)	ENSMODG00000002756	ENSMODG00000002759	ENSMODG00000002772	CPN1 (ENSMODG00000003251) #12	DNMBP (ENSMODG00000003273) #13	ENSMODG00000003389 #15	CUTC (ENSMODG00000048417) #16	COX15 (ENSMODG00000003487) #17	ENTPD7 (ENSMODG00000003505) #18	SLC25A28 (ENSMODG00000003519) #19	NKX2-3 (ENSMODG00000043640) #20	GOT1 (ENSMODG00000003558) #22	CNNM1 (ENSMODG00000003576) #23	ENSMODG00000028699 #26	ENSMODG00000003602 #26	HPS1 (ENSMODG00000003664) #27	ENSMODG00000003692	LOXL4 (ENSMODG00000003726) #28	ENSMODG00000039006 #29	ENSMODG00000003748 #29	ENSMODG00000050795	CRTAC1 (ENSMODG00000003807) #30	GOLGA7B (ENSMODG00000028192) #31	SFRP5 (ENSMODG00000003859) #32	ZFYVE27 (ENSMODG00000003907) #33	MARVELD1 (ENSMODG00000003911) #34	ENSMODG00000003917 #35
Platypus	MODERN SPECIES	14	DNTT (ENSOANG00000005141)	HELLS (ENSOANG00000005139)	PDLIM1 (ENSOANG00000005138)	SORBS1 (ENSOANG00000005136)	ALDH18A1 (ENSOANG00000007159)	TCTN3 (ENSOANG00000019944)	ENTPD1 (ENSOANG00000037893)	CPN1 (ENSOANG00000043726) #12	DNMBP (ENSOANG00000044119) #13	ENSOANG00000005819 #15	CUTC (ENSOANG00000011762) #16	COX15 (ENSOANG00000010125) #17	ENTPD7 (ENSOANG00000041336) #18	SLC25A28 (ENSOANG00000006335) #19	NKX2-3 (ENSOANG00000042302) #20	GOT1 (ENSOANG00000006868) #22	CNNM1 (ENSOANG00000044842) #23	ENSOANG00000047769 #26	ENSOANG00000039488 #26	HPS1 (ENSOANG00000003472) #27	PYROXD2 (ENSOANG00000003471)	ENSOANG00000019825	LOXL4 (ENSOANG00000000515) #28	ENSOANG00000037303 #29	ENSOANG00000045727	CRTAC1 (ENSOANG00000010461) #30	GOLGA7B (ENSOANG00000047632) #31	SFRP5 (ENSOANG00000043234) #32	ZFYVE27 (ENSOANG00000006007) #33	MARVELD1 (ENSOANG00000009255) #34	AVPI1 (ENSOANG00000040881) #35
Sauria	ANCESTRAL SPECIES	8			ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00940000177979	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Archelosauria	ANCESTRAL SPECIES	10			ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00940000177979	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Archosauria	ANCESTRAL SPECIES	7	ENSGT00940000163757	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00940000177979	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Aves	ANCESTRAL SPECIES	6	ENSGT00940000163757	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00940000177979	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Neognathae	ANCESTRAL SPECIES	7	ENSGT00940000163757	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00940000177979	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Neognathae_b	ANCESTRAL SPECIES	8	ENSGT00940000165097.b	ENSGT00940000163757	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000177979	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Neognathae_c	ANCESTRAL SPECIES	8	ENSGT00940000163757	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00940000177979	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Golden eagle	MODERN SPECIES	2	ENSACCG00020002760	ENSACCG00020002690	ADGRA1 (ENSACCG00020002556)	ENSACCG00020002536	ENTPD1 (ENSACCG00020002506)	CPN1 (ENSACCG00020002478) #12	DNMBP (ENSACCG00020002424) #13	ENSACCG00020002084	CUTC (ENSACCG00020001448) #16	COX15 (ENSACCG00020001426) #17	ATP6V0E2 (ENSACCG00020001403)	ENTPD7 (ENSACCG00020001384) #18	SLC25A28 (ENSACCG00020001364) #19	NKX2-3 (ENSACCG00020001343) #20	ENSACCG00020001328	GOT1 (ENSACCG00020001316) #22	CNNM1 (ENSACCG00020001275) #23	HPSE2 (ENSACCG00020001239) #26	HPS1 (ENSACCG00020001192) #27	PYROXD2 (ENSACCG00020001152)	LOXL4 (ENSACCG00020001067) #28	R3HCC1L (ENSACCG00020000919) #29	CRTAC1 (ENSACCG00020000882) #30	GOLGA7B (ENSACCG00020000849) #31	SFRP5 (ENSACCG00020000820) #32	ZFYVE27 (ENSACCG00020000789) #33	AVPI1 (ENSACCG00020000729) #35	PI4K2A (ENSACCG00020000698) #36	MORN4 (ENSACCG00020000670) #37	HOGA1 (ENSACCG00020000638)	ANKRD2 (ENSACCG00020000618)
Kakapo	MODERN SPECIES	22	ENSSHBG00005020686	ENSSHBG00005020690	ENSSHBG00005020698	ADGRA1 (ENSSHBG00005020702)	ENSSHBG00005020708	ENTPD1 (ENSSHBG00005020713)	CPN1 (ENSSHBG00005020718) #12	DNMBP (ENSSHBG00005020724) #13	ENSSHBG00005020733	CUTC (ENSSHBG00005020740) #16	COX15 (ENSSHBG00005020758) #17	ATP6V0E2 (ENSSHBG00005020762)	ENTPD7 (ENSSHBG00005020766) #18	SLC25A28 (ENSSHBG00005020773) #19	NKX2-3 (ENSSHBG00005020777) #20	GOT1 (ENSSHBG00005020787) #22	CNNM1 (ENSSHBG00005020808) #23	HPSE2 (ENSSHBG00005020827) #26	HPS1 (ENSSHBG00005020839) #27	PYROXD2 (ENSSHBG00005020847)	LOXL4 (ENSSHBG00005020859) #28	R3HCC1L (ENSSHBG00005020866) #29	CRTAC1 (ENSSHBG00005020869) #30	GOLGA7B (ENSSHBG00005020876) #31	SFRP5 (ENSSHBG00005020880) #32	ZFYVE27 (ENSSHBG00005020886) #33	MARVELD1 (ENSSHBG00005020893) #34	AVPI1 (ENSSHBG00005020896) #35	PI4K2A (ENSSHBG00005020904) #36	HOGA1 (ENSSHBG00005020914)	ANKRD2 (ENSSHBG00005020924)
Passeriformes	ANCESTRAL SPECIES	10	ENSGT00940000165097.b	ENSGT00940000163757	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000177979	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00960000193282	ENSGT00510000049872 #35	ENSGT00390000010434.b #36
Great tit	MODERN SPECIES	26	PPIF (ENSPMJG00000003782)	ZMIZ1 (ENSPMJG00000003792)	ENSPMJG00000003823	POLR3A (ENSPMJG00000003830)	DLG5 (ENSPMJG00000003837)	ENSPMJG00000003870	ENTPD1 (ENSPMJG00000003877)	CPN1 (ENSPMJG00000003883) #12	DNMBP (ENSPMJG00000003884) #13	ENSPMJG00000003890	CUTC (ENSPMJG00000003894) #16	COX15 (ENSPMJG00000003900) #17	SLC25A28 (ENSPMJG00000003901) #19	ENTPD7 (ENSPMJG00000003905) #18	NKX2-3 (ENSPMJG00000003959) #20	GOT1 (ENSPMJG00000003964) #22	ENSPMJG00000003969	CNNM1 (ENSPMJG00000003971) #23	HPSE2 (ENSPMJG00000003974) #26	HPS1 (ENSPMJG00000003977) #27	PYROXD2 (ENSPMJG00000003978)	LOXL4 (ENSPMJG00000003995) #28	R3HCC1L (ENSPMJG00000003997) #29	CRTAC1 (ENSPMJG00000004009) #30	GOLGA7B (ENSPMJG00000004029) #31	SFRP5 (ENSPMJG00000004031) #32	ZFYVE27 (ENSPMJG00000004057) #33	MARVELD1 (ENSPMJG00000004062) #34	ENSPMJG00000004065	PI4K2A (ENSPMJG00000004066) #36	MORN4 (ENSPMJG00000004071) #37
Passeriformes_d	ANCESTRAL SPECIES	7	ENSGT00940000165097.b	ENSGT00940000163757	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000177979	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Passeriformes_g	ANCESTRAL SPECIES	8	ENSGT00940000165097.b	ENSGT00960000190513	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000177979	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Medium ground finch	MODERN SPECIES	3	CCNJ (ENSGFOG00000000124)	ZNF518A (ENSGFOG00000000121)	DNTT (ENSGFOG00000000117)	KNDC1 (ENSGFOG00000000102)	ADGRA1 (ENSGFOG00000000091)	ENSGFOG00000000084	ENTPD1 (ENSGFOG00000000077)	CPN1 (ENSGFOG00000000074) #12	DNMBP (ENSGFOG00000000068) #13	ENSGFOG00000000030	CUTC (ENSGFOG00000000007) #16	COX15 (ENSGFOG00000008262) #17	ENTPD7 (ENSGFOG00000008227) #18	SLC25A28 (ENSGFOG00000008217) #19	ENSGFOG00000008213	GOT1 (ENSGFOG00000008200) #22	ENSGFOG00000008192 #23	HPS1 (ENSGFOG00000008180) #27	PYROXD2 (ENSGFOG00000008141)	LOXL4 (ENSGFOG00000008104) #28	R3HCC1L (ENSGFOG00000008093) #29	CRTAC1 (ENSGFOG00000008070) #30	GOLGA7B (ENSGFOG00000008054) #31	SFRP5 (ENSGFOG00000008046) #32	ZFYVE27 (ENSGFOG00000008036) #33	PI4K2A (ENSGFOG00000007984) #36	MORN4 (ENSGFOG00000007960) #37	HOGA1 (ENSGFOG00000007950)	ANKRD2 (ENSGFOG00000007941)	UBTD1 (ENSGFOG00000007936)	MMS19 (ENSGFOG00000007914)
Passeroidea	ANCESTRAL SPECIES	7	ENSGT00940000165097.b	ENSGT00960000190513	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000177979	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Zebra finch	MODERN SPECIES	28	ENSTGUG00000009093	ENSTGUG00000028139	KNDC1 (ENSTGUG00000009094)	ADGRA1 (ENSTGUG00000009101)	ENSTGUG00000009131	ENTPD1 (ENSTGUG00000009148)	CPN1 (ENSTGUG00000009169) #12	DNMBP (ENSTGUG00000009180) #13	ENSTGUG00000009186	CUTC (ENSTGUG00000009354) #16	COX15 (ENSTGUG00000009368) #17	ATP6V0E2 (ENSTGUG00000009386)	ENTPD7 (ENSTGUG00000009398) #18	SLC25A28 (ENSTGUG00000009410) #19	NKX2-3 (ENSTGUG00000009415) #20	GOT1 (ENSTGUG00000009418) #22	ENSTGUG00000027229	CNNM1 (ENSTGUG00000009430) #23	HPSE2 (ENSTGUG00000009462) #26	PYROXD2 (ENSTGUG00000009444)	LOXL4 (ENSTGUG00000009546) #28	R3HCC1L (ENSTGUG00000009574) #29	CRTAC1 (ENSTGUG00000009582) #30	GOLGA7B (ENSTGUG00000026467) #31	SFRP5 (ENSTGUG00000023601) #32	ZFYVE27 (ENSTGUG00000009586) #33	AVPI1 (ENSTGUG00000025747) #35	PI4K2A (ENSTGUG00000009606) #36	MORN4 (ENSTGUG00000009616) #37	HOGA1 (ENSTGUG00000009624)	ANKRD2 (ENSTGUG00000022547)
Common canary	MODERN SPECIES	7	ENSSCAG00000016801	ENSSCAG00000016797	KNDC1 (ENSSCAG00000016790)	ADGRA1 (ENSSCAG00000016784)	ENSSCAG00000016775	ENTPD1 (ENSSCAG00000016768)	CPN1 (ENSSCAG00000016764) #12	DNMBP (ENSSCAG00000016756) #13	ENSSCAG00000016744	CUTC (ENSSCAG00000016738) #16	COX15 (ENSSCAG00000016735) #17	ATP6V0E2 (ENSSCAG00000016732)	ENTPD7 (ENSSCAG00000016728) #18	SLC25A28 (ENSSCAG00000016727) #19	ENSSCAG00000016725	GOT1 (ENSSCAG00000016723) #22	CNNM1 (ENSSCAG00000016720) #23	ENSSCAG00000016717	HPSE2 (ENSSCAG00000016715) #26	HPS1 (ENSSCAG00000016709) #27	PYROXD2 (ENSSCAG00000016694)	LOXL4 (ENSSCAG00000016687) #28	ENSSCAG00000016682 #29	CRTAC1 (ENSSCAG00000016674) #30	GOLGA7B (ENSSCAG00000016669) #31	SFRP5 (ENSSCAG00000016665) #32	ZFYVE27 (ENSSCAG00000016659) #33	MORN4 (ENSSCAG00000016656) #37	HOGA1 (ENSSCAG00000016653)	ANKRD2 (ENSSCAG00000016650)	UBTD1 (ENSSCAG00000016648)
Flycatcher	MODERN SPECIES	25	ENSFALG00000007963	CCNJ (ENSFALG00000028478)	ZNF518A (ENSFALG00000007969)	ENSFALG00000007971	DNTT (ENSFALG00000007979)	ENSFALG00000015104	ENSFALG00000025354	ENSFALG00000008006	ADGRA1 (ENSFALG00000008023)	ENSFALG00000008026	ENSFALG00000008031	ENSFALG00000008040 #12	DNMBP (ENSFALG00000008054) #13	ENSFALG00000008090	ENSFALG00000008185 #16	ENSFALG00000008257 #22	ENSFALG00000026409 #17	ENSFALG00000023969	ENTPD7 (ENSFALG00000008221) #18	ENSFALG00000008240 #19	ENSFALG00000025597	CNNM1 (ENSFALG00000008277) #23	HPSE2 (ENSFALG00000008281) #26	HPS1 (ENSFALG00000008293) #27	PYROXD2 (ENSFALG00000008323)	LOXL4 (ENSFALG00000008346) #28	R3HCC1L (ENSFALG00000008355) #29	CRTAC1 (ENSFALG00000008358) #30	GOLGA7B (ENSFALG00000008361) #31	SFRP5 (ENSFALG00000008364) #32	ZFYVE27 (ENSFALG00000008374) #33
Galloanserae	ANCESTRAL SPECIES	6	ENSGT00940000163757	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00940000177979	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Phasianidae	ANCESTRAL SPECIES	6	ENSGT00940000165097.b	ENSGT00940000163757	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000177979	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000164861	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Japanese quail	MODERN SPECIES	24	ENSCJPG00005019512	VENTX (ENSCJPG00005019513)	ENSCJPG00005019514	ADGRA1 (ENSCJPG00005019517)	ENSCJPG00005019518	ENTPD1 (ENSCJPG00005019520)	CPN1 (ENSCJPG00005019521) #12	DNMBP (ENSCJPG00005019522) #13	ENSCJPG00005019523	COX15 (ENSCJPG00005019524) #17	CUTC (ENSCJPG00005019525) #16	ATP6V0E2 (ENSCJPG00005019526)	ENTPD7 (ENSCJPG00005019527) #18	SLC25A28 (ENSCJPG00005019528) #19	NKX2-3 (ENSCJPG00005019530) #20	GOT1 (ENSCJPG00005019532) #22	ENSCJPG00005019533	CNNM1 (ENSCJPG00005019534) #23	HPSE2 (ENSCJPG00005019535) #26	HPS1 (ENSCJPG00005019536) #27	ENSCJPG00005019537	LOXL4 (ENSCJPG00005019538) #28	ENSCJPG00005019540 #29	CRTAC1 (ENSCJPG00005019542) #30	GOLGA7B (ENSCJPG00005019543) #31	SFRP5 (ENSCJPG00005019544) #32	ZFYVE27 (ENSCJPG00005019545) #33	MARVELD1 (ENSCJPG00005019546) #34	ENSCJPG00005019547	PI4K2A (ENSCJPG00005019548) #36	MORN4 (ENSCJPG00005019551) #37
Phasianidae_b	ANCESTRAL SPECIES	6	ENSGT00940000165097.a	ENSGT00940000165097.b	ENSGT00940000163757	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000177979	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000164861	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Chicken	MODERN SPECIES	35	VENTX (ENSGALG00010021787)	VENTX (ENSGALG00010021796)	ENSGALG00010021842	ADGRA1 (ENSGALG00010021966)	ENSGALG00010021994	ENTPD1 (ENSGALG00010022100)	CPN1 (ENSGALG00010022154) #12	DNMBP (ENSGALG00010022200) #13	ENSGALG00010022211	CUTC (ENSGALG00010022221) #16	COX15 (ENSGALG00010022234) #17	ENTPD7 (ENSGALG00010022244) #18	SLC25A28 (ENSGALG00010022250) #19	NKX2-3 (ENSGALG00010018311) #20	ENSGALG00010018318	GOT1 (ENSGALG00010018323) #22	ENSGALG00010018328	CNNM1 (ENSGALG00010018350) #23	HPSE2 (ENSGALG00010018365) #26	HPS1 (ENSGALG00010018374) #27	PYROXD2 (ENSGALG00010018430) #28	R3HCC1L (ENSGALG00010017790) #29	CRTAC1 (ENSGALG00010023163) #30	GOLGA7B (ENSGALG00010017891) #31	SFRP5 (ENSGALG00010017808) #32	ZFYVE27 (ENSGALG00010020595) #33	MARVELD1 (ENSGALG00010022840) #34	AVPI1 (ENSGALG00010020609) #35	PI4K2A (ENSGALG00010020616) #36	MORN4 (ENSGALG00010020626) #37	HOGA1 (ENSGALG00010020633)
Turkey	MODERN SPECIES	28	ENSMGAG00000015334	ENSMGAG00000022311	ENSMGAG00000020680	ENSMGAG00000009303	ENSMGAG00000021605	ADGRA1 (ENSMGAG00000009318)	ENSMGAG00000009328	ENSMGAG00000009343	ENSMGAG00000009366 #12	DNMBP (ENSMGAG00000009389) #13	ENSMGAG00000009405	ENSMGAG00000009482 #16	COX15 (ENSMGAG00000009501) #17	ENSMGAG00000020994	SLC25A28 (ENSMGAG00000019966) #19	GOT1 (ENSMGAG00000009531) #22	ENSMGAG00000022276	CNNM1 (ENSMGAG00000009551) #23	HPSE2 (ENSMGAG00000009567) #26	HPS1 (ENSMGAG00000009581) #27	ENSMGAG00000009576	LOXL4 (ENSMGAG00000009627) #28	R3HCC1L (ENSMGAG00000009654) #29	CRTAC1 (ENSMGAG00000009664) #30	GOLGA7B (ENSMGAG00000009694) #31	SFRP5 (ENSMGAG00000009698) #32	ZFYVE27 (ENSMGAG00000009699) #33	PI4K2A (ENSMGAG00000009723) #36	MORN4 (ENSMGAG00000009733) #37	HOGA1 (ENSMGAG00000009750)	ANKRD2 (ENSMGAG00000009758)
Anatidae	ANCESTRAL SPECIES	4	ENSGT00940000165097.a	ENSGT00940000165097.b	ENSGT00940000163757	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00950000183082.b.b.b #22	ENSGT00940000177979	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00390000010434.b #36	ENSGT00530000063604.A	ENSGT00940000153956.b
Pink-footed goose	MODERN SPECIES	11		KNDC1 (ENSABRG00000005820)	ADGRA1 (ENSABRG00000005791)	ENSABRG00000005753	ENTPD1 (ENSABRG00000005680)	CPN1 (ENSABRG00000005662) #12	DNMBP (ENSABRG00000005624) #13	ENSABRG00000002986	CUTC (ENSABRG00000002672) #16	COX15 (ENSABRG00000002294) #17	ATP6V0E2 (ENSABRG00000002230)	ENTPD7 (ENSABRG00000002225) #18	SLC25A28 (ENSABRG00000002210) #19	NKX2-3 (ENSABRG00000002204) #20	ENSABRG00000002196	GOT1 (ENSABRG00000000737) #22	CNNM1 (ENSABRG00000000684) #23	HPSE2 (ENSABRG00000008559) #26	HPS1 (ENSABRG00000008515) #27	PYROXD2 (ENSABRG00000008449)	LOXL4 (ENSABRG00000008428) #28	R3HCC1L (ENSABRG00000008410) #29	CRTAC1 (ENSABRG00000008392) #30	GOLGA7B (ENSABRG00000008376) #31	SFRP5 (ENSABRG00000008364) #32	ZFYVE27 (ENSABRG00000008327) #33	MARVELD1 (ENSABRG00000008311) #34	PI4K2A (ENSABRG00000008151) #36	HOGA1 (ENSABRG00000008109)	ANKRD2 (ENSABRG00000008091)	UBTD1 (ENSABRG00000008082)
Duck	MODERN SPECIES	24	ENSAPLG00000006466	ZNF518A (ENSAPLG00000030969)	BLNK (ENSAPLG00000006563)	DNTT (ENSAPLG00000012429)	ENSAPLG00000018699	ENSAPLG00000024228	ENSAPLG00000017553	KNDC1 (ENSAPLG00000012166)	ENSAPLG00000012029	ENSAPLG00000012001	ENTPD1 (ENSAPLG00000011301)	CPN1 (ENSAPLG00000011182) #12	DNMBP (ENSAPLG00000010732) #13	ENSAPLG00000008620	CUTC (ENSAPLG00000029466) #16	GOT1 (ENSAPLG00000008121) #22	ENSAPLG00000023058	CNNM1 (ENSAPLG00000007945) #23	HPSE2 (ENSAPLG00000027024) #26	ENSAPLG00000019744	CRTAC1 (ENSAPLG00000011099) #30	GOLGA7B (ENSAPLG00000018711) #31	SFRP5 (ENSAPLG00000021384) #32	ZFYVE27 (ENSAPLG00000028815) #33	ENSAPLG00000015404	ZDHHC16 (ENSAPLG00000012896)	SLIT1 (ENSAPLG00000013620)	ARHGAP19 (ENSAPLG00000014166)	RRP12 (ENSAPLG00000014387)	LCOR (ENSAPLG00000013561)	ENSAPLG00000019156
African ostrich	MODERN SPECIES	720	BLNK (ENSSCUG00000016866)	DNTT (ENSSCUG00000016857)	ENSSCUG00000016850	KNDC1 (ENSSCUG00000016841)	ADGRA1 (ENSSCUG00000016835)	ENSSCUG00000016833	ENTPD1 (ENSSCUG00000016826)	CPN1 (ENSSCUG00000016820) #12	DNMBP (ENSSCUG00000016813) #13	ENSSCUG00000016802	CUTC (ENSSCUG00000016780) #16	COX15 (ENSSCUG00000016774) #17	ENTPD7 (ENSSCUG00000016769) #18	SLC25A28 (ENSSCUG00000016765) #19	ENSSCUG00000016763	GOT1 (ENSSCUG00000016759) #22	ENSSCUG00000016758 #23	HPSE2 (ENSSCUG00000016749) #26
Australian saltwater crocodile	MODERN SPECIES	68	MARCHF5 (ENSCPRG00005014701)	CPEB3 (ENSCPRG00005014698)	BTAF1 (ENSCPRG00005013956)	ENSCPRG00005013876	ENSCPRG00005013875	ENSCPRG00005013869	ENSCPRG00005013866	CCNJ (ENSCPRG00005013862)	ZNF518A (ENSCPRG00005013859)	BLNK (ENSCPRG00005013845)	DNTT (ENSCPRG00005013837)	ENSCPRG00005013820	ENSCPRG00005013814	KNDC1 (ENSCPRG00005013776)	ADGRA1 (ENSCPRG00005013764)	GOT1 (ENSCPRG00005013741) #22	ENSCPRG00005013735 #23	HPSE2 (ENSCPRG00005013713) #26	HPS1 (ENSCPRG00005013698) #27	LOXL4 (ENSCPRG00005013693) #28	ENSCPRG00005013691 #29	CRTAC1 (ENSCPRG00005013685) #30	SFRP5 (ENSCPRG00005013682) #32	GOLGA7B (ENSCPRG00005013674) #31	ZFYVE27 (ENSCPRG00005013662) #33	MARVELD1 (ENSCPRG00005013655) #34	PI4K2A (ENSCPRG00005013650) #36	MORN4 (ENSCPRG00005013645) #37	HOGA1 (ENSCPRG00005013640)	ANKRD2 (ENSCPRG00005013635)	EXOSC1 (ENSCPRG00005013566)
Cryptodira	ANCESTRAL SPECIES	6				ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Testudinoidea	ANCESTRAL SPECIES	2				ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a.d #26	ENSGT00390000015298.f #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630
Testudinidae	ANCESTRAL SPECIES	9					ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a.c #26	ENSGT00390000004874.a.a.d #26	ENSGT00390000015298.f #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A	ENSGT00940000153956.b
Goode s thornscrub tortoise	MODERN SPECIES	21				TCTN3 (ENSGEVG00005002176)	ENSGEVG00005002315	ENTPD1 (ENSGEVG00005002324)	CPN1 (ENSGEVG00005002356) #12	DNMBP (ENSGEVG00005002430) #13	ENSGEVG00005002479	CUTC (ENSGEVG00005002589) #16	COX15 (ENSGEVG00005002611) #17	ATP6V0E2 (ENSGEVG00005002649)	ENTPD7 (ENSGEVG00005002666) #18	SLC25A28 (ENSGEVG00005002739) #19	NKX2-3 (ENSGEVG00005002751) #20	GOT1 (ENSGEVG00005002776) #22	CNNM1 (ENSGEVG00005002795) #23	HPSE2 (ENSGEVG00005002820) #26	HPS1 (ENSGEVG00005002869) #27	ENSGEVG00005002944	ENSGEVG00005002965	LOXL4 (ENSGEVG00005003041) #28	R3HCC1L (ENSGEVG00005003179) #29	ENSGEVG00005003202 #30	ENSGEVG00005003240 #31	ENSGEVG00005003246 #32	ZFYVE27 (ENSGEVG00005003269) #33	MARVELD1 (ENSGEVG00005003317) #34	AVPI1 (ENSGEVG00005003324) #35	PI4K2A (ENSGEVG00005003337) #36	MORN4 (ENSGEVG00005003350) #37
Abingdon island giant tortoise	MODERN SPECIES	2461							ENSCABG00000001964	ENSCABG00000001916	ENSCABG00000001833	USP18 (ENSCABG00000001776)	ENSCABG00000001766	ENSCABG00000001764	PEX26 (ENSCABG00000001761)	ENSCABG00000001758	NKX2-3 (ENSCABG00000001757) #20	GOT1 (ENSCABG00000000614) #22	CNNM1 (ENSCABG00000000554) #23	ENSCABG00000000541 #26
Emydidae	ANCESTRAL SPECIES	6				ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a.d #26	ENSGT00390000015298.f #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A	ENSGT00940000153956.b
Three-toed box turtle	MODERN SPECIES	39				ALDH18A1 (ENSTMTG00000006775)	TCTN3 (ENSTMTG00000006805)	ENTPD1 (ENSTMTG00000006868)	CPN1 (ENSTMTG00000000069) #12	DNMBP (ENSTMTG00000000118) #13	ENSTMTG00000000173	CUTC (ENSTMTG00000000254) #16	COX15 (ENSTMTG00000000300) #17	ATP6V0E2 (ENSTMTG00000000315)	ENTPD7 (ENSTMTG00000000338) #18	SLC25A28 (ENSTMTG00000000367) #19	NKX2-3 (ENSTMTG00000000388) #20	GOT1 (ENSTMTG00000000402) #22	CNNM1 (ENSTMTG00000000418) #23	HPSE2 (ENSTMTG00000000452) #26	HPS1 (ENSTMTG00000000563) #27	PYROXD2 (ENSTMTG00000000830)	ENSTMTG00000000900 #29	ZFYVE27 (ENSTMTG00000000937) #33	MARVELD1 (ENSTMTG00000001012) #34	AVPI1 (ENSTMTG00000001017) #35	PI4K2A (ENSTMTG00000001025) #36	ENSTMTG00000001035	MMS19 (ENSTMTG00000001309)	ZDHHC16 (ENSTMTG00000002566)	ARHGAP19 (ENSTMTG00000002583)	ENSTMTG00000002590	LCOR (ENSTMTG00000002602)
painted turtle	MODERN SPECIES	2388			ALDH18A1 (ENSCPBG00000012393)	TCTN3 (ENSCPBG00000012391)	ENTPD1 (ENSCPBG00000012386)	CPN1 (ENSCPBG00000012381) #12	DNMBP (ENSCPBG00000012299) #13	ENSCPBG00000012273	CUTC (ENSCPBG00000012259) #16	COX15 (ENSCPBG00000012256) #17	ENTPD7 (ENSCPBG00000012247) #18	ATP6V0E2 (ENSCPBG00000012242)	SLC25A28 (ENSCPBG00000012244) #19	ENSCPBG00000012240	NKX2-3 (ENSCPBG00000012238) #20	GOT1 (ENSCPBG00000012232) #22	CNNM1 (ENSCPBG00000012222) #23	ENSCPBG00000012218 #26	ENSCPBG00000012214 #26	ENSCPBG00000012212 #27	ENSCPBG00000012208 #27	PYROXD2 (ENSCPBG00000012204)	LOXL4 (ENSCPBG00000012198) #28	ENSCPBG00000012195 #29	CRTAC1 (ENSCPBG00000012190) #30	GOLGA7B (ENSCPBG00000012188) #31	ZFYVE27 (ENSCPBG00000012184) #33	MARVELD1 (ENSCPBG00000012178) #34	AVPI1 (ENSCPBG00000012176) #35	PI4K2A (ENSCPBG00000012171) #36	MORN4 (ENSCPBG00000012166) #37
Chinese turtle	MODERN SPECIES	1293																GOT1 (ENSPSIG00000005685) #22
Lepidosauria	ANCESTRAL SPECIES	8			ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00940000177979	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Episquamata	ANCESTRAL SPECIES	2	ENSGT00390000013063	ENSGT00940000161528	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00940000177979	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Laterata	ANCESTRAL SPECIES		ENSGT00390000013063	ENSGT00940000161528	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00940000177979	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	13	ENSPMRG00000003455	DUSP28 (ENSPMRG00000003450)	ALDH18A1 (ENSPMRG00000003436)	TCTN3 (ENSPMRG00000003398)	ENTPD1 (ENSPMRG00000003388)	CPN1 (ENSPMRG00000003351) #12	DNMBP (ENSPMRG00000003333) #13	ENSPMRG00000003312	CUTC (ENSPMRG00000003293) #16	COX15 (ENSPMRG00000003281) #17	ATP6V0E2 (ENSPMRG00000003272)	ENTPD7 (ENSPMRG00000003262) #18	SLC25A28 (ENSPMRG00000003256) #19	NKX2-3 (ENSPMRG00000003244) #20	ENSPMRG00000003236	ENSPMRG00000003228 #22	CNNM1 (ENSPMRG00000003219) #23	HPSE2 (ENSPMRG00000003207) #26	HPS1 (ENSPMRG00000003174) #27	ENSPMRG00000003158	PYROXD2 (ENSPMRG00000003147)	LOXL4 (ENSPMRG00000003119) #28	R3HCC1L (ENSPMRG00000003100) #29	CRTAC1 (ENSPMRG00000003081) #30	GOLGA7B (ENSPMRG00000003064) #31	SFRP5 (ENSPMRG00000003057) #32	ZFYVE27 (ENSPMRG00000003032) #33	MARVELD1 (ENSPMRG00000003018) #34	AVPI1 (ENSPMRG00000003011) #35	PI4K2A (ENSPMRG00000002999) #36	MORN4 (ENSPMRG00000002981) #37
Common wall lizard	MODERN SPECIES	306																ENSPMRG00000019215 #22
Argentine black and white tegu	MODERN SPECIES	19	ENSSMRG00000021958	DUSP28 (ENSSMRG00000021957)	ALDH18A1 (ENSSMRG00000021956)	TCTN3 (ENSSMRG00000021955)	ENTPD1 (ENSSMRG00000021954)	CPN1 (ENSSMRG00000021953) #12	DNMBP (ENSSMRG00000021711) #13	ENSSMRG00000021710	CUTC (ENSSMRG00000021709) #16	COX15 (ENSSMRG00000021708) #17	ATP6V0E2 (ENSSMRG00000021707)	ENTPD7 (ENSSMRG00000021706) #18	SLC25A28 (ENSSMRG00000021705) #19	NKX2-3 (ENSSMRG00000021704) #20	ENSSMRG00000021703	GOT1 (ENSSMRG00000021702) #22	CNNM1 (ENSSMRG00000021701) #23	HPSE2 (ENSSMRG00000021700) #26	HPS1 (ENSSMRG00000021699) #27	PYROXD2 (ENSSMRG00000021698)	LOXL4 (ENSSMRG00000021697) #28	R3HCC1L (ENSSMRG00000021696) #29	CRTAC1 (ENSSMRG00000021695) #30	GOLGA7B (ENSSMRG00000021693) #31	SFRP5 (ENSSMRG00000021692) #32	ZFYVE27 (ENSSMRG00000021691) #33	MARVELD1 (ENSSMRG00000021690) #34	AVPI1 (ENSSMRG00000021689) #35	PI4K2A (ENSSMRG00000021688) #36	MORN4 (ENSSMRG00000021687) #37	HOGA1 (ENSSMRG00000021686)
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00530000063947.B	ENSGT00390000013063	ENSGT00940000161528	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Elapidae	ANCESTRAL SPECIES	4	ENSGT00530000063947.B	ENSGT00390000013063	ENSGT00940000161528	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Elapidae_a	ANCESTRAL SPECIES		ENSGT00530000063947.B	ENSGT00390000013063	ENSGT00940000161528	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000164861	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00530000063947.B	ENSGT00390000013063	ENSGT00940000161528	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000164861	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37	ENSGT00530000063604.A
Eastern brown snake	MODERN SPECIES	16	MAP6D1 (ENSPTXG00000018043)	PARL (ENSPTXG00000018042)	ENSPTXG00000018041	DUSP28 (ENSPTXG00000018040)	ALDH18A1 (ENSPTXG00000018039)	TCTN3 (ENSPTXG00000018038)	ENTPD1 (ENSPTXG00000018037)	CPN1 (ENSPTXG00000018036) #12	ENSPTXG00000018035 #13	DNMBP (ENSPTXG00000018034) #13	ENSPTXG00000013275	CUTC (ENSPTXG00000013237) #16	ATP6V0E2 (ENSPTXG00000013236)	ENTPD7 (ENSPTXG00000018586) #18	SLC25A28 (ENSPTXG00000018585) #19	GOT1 (ENSPTXG00000018584) #22	CNNM1 (ENSPTXG00000018566) #23	HPSE2 (ENSPTXG00000018561) #26	HPS1 (ENSPTXG00000018557) #27	ENSPTXG00000018513	LOXL4 (ENSPTXG00000018477) #28	R3HCC1L (ENSPTXG00000018476) #29	CRTAC1 (ENSPTXG00000018473) #30	GOLGA7B (ENSPTXG00000018471) #31	SFRP5 (ENSPTXG00000018469) #32	ZFYVE27 (ENSPTXG00000018467) #33	MARVELD1 (ENSPTXG00000018465) #34	AVPI1 (ENSPTXG00000018464) #35	PI4K2A (ENSPTXG00000018462) #36	MORN4 (ENSPTXG00000018460) #37	HOGA1 (ENSPTXG00000018458)
Mainland tiger snake	MODERN SPECIES		PARL (ENSNSUG00000010889)	ENSNSUG00000010887	DUSP28 (ENSNSUG00000010886)	ALDH18A1 (ENSNSUG00000010719)	TCTN3 (ENSNSUG00000010698)	ENTPD1 (ENSNSUG00000010696)	CPN1 (ENSNSUG00000010695) #12	DNMBP (ENSNSUG00000010693) #13	ENSNSUG00000007693	CUTC (ENSNSUG00000007671) #16	COX15 (ENSNSUG00000007670) #17	ATP6V0E2 (ENSNSUG00000007665)	ENTPD7 (ENSNSUG00000007636) #18	SLC25A28 (ENSNSUG00000007635) #19	NKX2-3 (ENSNSUG00000007632) #20	GOT1 (ENSNSUG00000007630) #22	CNNM1 (ENSNSUG00000007490) #23	HPSE2 (ENSNSUG00000007487) #26	HPS1 (ENSNSUG00000007471) #27	ENSNSUG00000007463	LOXL4 (ENSNSUG00000007419) #28	R3HCC1L (ENSNSUG00000007415) #29	CRTAC1 (ENSNSUG00000007402) #30	GOLGA7B (ENSNSUG00000007400) #31	SFRP5 (ENSNSUG00000007389) #32	ZFYVE27 (ENSNSUG00000007388) #33	MARVELD1 (ENSNSUG00000007387) #34	AVPI1 (ENSNSUG00000007386) #35	PI4K2A (ENSNSUG00000007385) #36	MORN4 (ENSNSUG00000007384) #37	HOGA1 (ENSNSUG00000007381)
Blue-lipped sea krait	MODERN SPECIES	9700																GOT1 (ENSLLTG00000012539) #22	CNNM1 (ENSLLTG00000011520) #23
Indian cobra	MODERN SPECIES	3	PARL (ENSNNAG00000007735)	ENSNNAG00000007711	DUSP28 (ENSNNAG00000007679)	ALDH18A1 (ENSNNAG00000005661)	TCTN3 (ENSNNAG00000005494)	ENTPD1 (ENSNNAG00000005470)	CPN1 (ENSNNAG00000005446) #12	DNMBP (ENSNNAG00000005362) #13	ENSNNAG00000004263	CUTC (ENSNNAG00000004119) #16	COX15 (ENSNNAG00000004090) #17	ATP6V0E2 (ENSNNAG00000004073)	ENTPD7 (ENSNNAG00000004035) #18	SLC25A28 (ENSNNAG00000004021) #19	NKX2-3 (ENSNNAG00000004007) #20	GOT1 (ENSNNAG00000003975) #22	CNNM1 (ENSNNAG00000003938) #23	ENSNNAG00000003927 #26	ENSNNAG00000003872 #26	HPS1 (ENSNNAG00000003839) #27	PYROXD2 (ENSNNAG00000003519)	ENSNNAG00000003322 #28	R3HCC1L (ENSNNAG00000003273) #29	CRTAC1 (ENSNNAG00000003254) #30	GOLGA7B (ENSNNAG00000003241) #31	SFRP5 (ENSNNAG00000003224) #32	ZFYVE27 (ENSNNAG00000003209) #33	MARVELD1 (ENSNNAG00000003201) #34	ENSNNAG00000003189 #35	PI4K2A (ENSNNAG00000003173) #36	MORN4 (ENSNNAG00000003159) #37
Lizard	MODERN SPECIES	2	PARL (ENSACAG00000004648)	ENSACAG00000028796	DUSP28 (ENSACAG00000045538)	ALDH18A1 (ENSACAG00000004480)	ENSACAG00000004453	ENTPD1 (ENSACAG00000004301)	ENSACAG00000004193 #12	DNMBP (ENSACAG00000004166) #13	ENSACAG00000003972	ENSACAG00000003797 #16	COX15 (ENSACAG00000003767) #17	ENSACAG00000026586	ENTPD7 (ENSACAG00000003702) #18	SLC25A28 (ENSACAG00000003687) #19	NKX2-3 (ENSACAG00000034886) #20	GOT1 (ENSACAG00000003583) #22	CNNM1 (ENSACAG00000003524) #23	HPSE2 (ENSACAG00000003429) #26	ENSACAG00000039564	HPS1 (ENSACAG00000002534) #27	ENSACAG00000042996	PYROXD2 (ENSACAG00000003367)	LOXL4 (ENSACAG00000003263) #28	R3HCC1L (ENSACAG00000003217) #29	CRTAC1 (ENSACAG00000003141) #30	GOLGA7B (ENSACAG00000028949) #31	SFRP5 (ENSACAG00000003105) #32	ZFYVE27 (ENSACAG00000003048) #33	MARVELD1 (ENSACAG00000003046) #34	AVPI1 (ENSACAG00000027657) #35	PI4K2A (ENSACAG00000002964) #36
tuatara	MODERN SPECIES	1056								CPN1 (ENSSPUG00000014172) #12	DNMBP (ENSSPUG00000014122) #13	ENSSPUG00000013623	CUTC (ENSSPUG00000013469) #16	COX15 (ENSSPUG00000013395) #17	ENSSPUG00000013368	SLC25A28 (ENSSPUG00000013238) #19	NKX2-3 (ENSSPUG00000013168) #20	GOT1 (ENSSPUG00000013156) #22	CNNM1 (ENSSPUG00000013124) #23	HPSE2 (ENSSPUG00000013059) #26	HPS1 (ENSSPUG00000013028) #27	ENSSPUG00000012961 #29	CRTAC1 (ENSSPUG00000012944) #30	GOLGA7B (ENSSPUG00000012927) #31	SFRP5 (ENSSPUG00000012919) #32	ZFYVE27 (ENSSPUG00000012905) #33	MARVELD1 (ENSSPUG00000012901) #34	AVPI1 (ENSSPUG00000012899) #35	PI4K2A (ENSSPUG00000012888) #36	MORN4 (ENSSPUG00000012878) #37	HOGA1 (ENSSPUG00000012791)	ANKRD2 (ENSSPUG00000012723)	UBTD1 (ENSSPUG00000012702)
Anura	ANCESTRAL SPECIES	25					ENSGT00500000044903	ENSGT01100000263542.C	ENSGT00940000158235 #12	ENSGT00950000183088.a.b.a #13	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000165452.a	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00390000011684	ENSGT00940000161036.B	ENSGT00940000157042 #28	ENSGT00530000063711.b #29	ENSGT00390000013726 #30	ENSGT00390000000134.a #31	ENSGT00940000160608 #32	ENSGT00390000013298 #33	ENSGT00510000049375 #34	ENSGT00510000049872 #35	ENSGT00390000010434.b #36	ENSGT00730000111173 #37
Frog	MODERN SPECIES	7	cep55 (ENSXETG00000035829)	myof.1 (ENSXETG00000003734)	pcdh8l (ENSXETG00000003735)	entpd1 (ENSXETG00000003736)	cpn1 (ENSXETG00000003737) #12	dnmbp (ENSXETG00000003739) #13	abcc2 (ENSXETG00000003740)	cox15 (ENSXETG00000003745) #17	cutc (ENSXETG00000003744) #16	entpd7 (ENSXETG00000003746) #18	slc25a28 (ENSXETG00000035534) #19	nkx3-3 (ENSXETG00000018432)	nkx2-3 (ENSXETG00000036831) #20	ENSXETG00000043602	ENSXETG00000048822	got1 (ENSXETG00000018428) #22	ENSXETG00000043400	cnnm1 (ENSXETG00000018427) #23	hpse2 (ENSXETG00000018422) #26	hps1 (ENSXETG00000036836) #27	pyroxd2 (ENSXETG00000018402)	ENSXETG00000033896	loxl4 (ENSXETG00000015828) #28	r3hcc1l (ENSXETG00000038254) #29	ENSXETG00000042342	crtac1 (ENSXETG00000030508) #30	golga7b (ENSXETG00000039738) #31	sfrp5 (ENSXETG00000024699) #32	zfyve27 (ENSXETG00000013529) #33	ENSXETG00000043898	marveld1 (ENSXETG00000042369) #34
Leishan spiny toad	MODERN SPECIES	9	TEX36 (ENSLLEG00000016765)	ALDH18A1 (ENSLLEG00000016471)	ENTPD1 (ENSLLEG00000016172)	CPN1 (ENSLLEG00000016076) #12	DNMBP (ENSLLEG00000015304) #13	ENSLLEG00000015069	CUTC (ENSLLEG00000024824) #16	COX15 (ENSLLEG00000024720) #17	ATP6V0E2 (ENSLLEG00000024672)	ENSLLEG00000024655	ENTPD7 (ENSLLEG00000024551) #18	SLC25A28 (ENSLLEG00000024415) #19	ENSLLEG00000024359	ENSLLEG00000024314	ENSLLEG00000024278 #20	GOT1 (ENSLLEG00000024001) #22	CNNM1 (ENSLLEG00000023809) #23	HPSE2 (ENSLLEG00000023742) #26	HPS1 (ENSLLEG00000023369) #27	ENSLLEG00000023225	LOXL4 (ENSLLEG00000023007) #28	R3HCC1L (ENSLLEG00000022943) #29	CRTAC1 (ENSLLEG00000021817) #30	SFRP5 (ENSLLEG00000021734) #32	GOLGA7B (ENSLLEG00000021577) #31	ENSLLEG00000021541	ENSLLEG00000021410 #33	ENSLLEG00000021381	ENSLLEG00000021312	ENSLLEG00000021261	MARVELD1 (ENSLLEG00000021232) #34
Coelacanth	MODERN SPECIES	956				ENTPD1 (ENSLACG00000003524)	CPN1 (ENSLACG00000004583) #12	DNMBP (ENSLACG00000005565) #13	ENSLACG00000008348	CUTC (ENSLACG00000009503) #16	ENSLACG00000010566	ENTPD7 (ENSLACG00000010971) #18	SLC25A28 (ENSLACG00000011624) #19	ENSLACG00000012533	nkx3.3 (ENSLACG00000012763)	ENSLACG00000013129 #20	PI4K2A (ENSLACG00000013641) #36	GOT1 (ENSLACG00000013959) #22	CNNM1 (ENSLACG00000014142) #23
Actinopterygii	ANCESTRAL SPECIES	47	ENSGT00510000049872 #35	ENSGT00390000013298 #33	ENSGT00940000160608 #32	ENSGT00390000000134.a #31	ENSGT00390000013726 #30	ENSGT00530000063711.b #29	ENSGT00940000157042 #28	ENSGT00940000161036.B	ENSGT00940000164861	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000165452.a	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00530000063604.A	ENSGT00730000111173 #37	ENSGT00940000175336	ENSGT00940000162611.b	ENSGT00940000162611.a	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331	ENSGT01100000263518.A.b	ENSGT00940000164383
Neopterygii	ANCESTRAL SPECIES	18	ENSGT00510000049872 #35	ENSGT00390000013298 #33	ENSGT00940000160608 #32	ENSGT00390000000134.a #31	ENSGT00390000013726 #30	ENSGT00530000063711.b #29	ENSGT00940000157042 #28	ENSGT00940000161036.B	ENSGT00940000164861	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049 #19	ENSGT00940000165452.a	ENSGT00940000157556 #20	ENSGT00950000183082.b.b.b #22	ENSGT00940000157525 #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00530000063604.A	ENSGT00730000111173 #37	ENSGT00940000175336	ENSGT00940000162611.b	ENSGT00940000162611.a	ENSGT00940000154965.A	ENSGT00940000170319	ENSGT00940000157322.b.a	ENSGT00940000157331	ENSGT01100000263518.A.b
Spotted gar	MODERN SPECIES	671	zgc:171482 (ENSLOCG00000008863)	zfyve27 (ENSLOCG00000008885) #33	sfrp5 (ENSLOCG00000008904) #32	golga7ba (ENSLOCG00000008912) #31	crtac1a (ENSLOCG00000008921) #30	ENSLOCG00000008944 #29	LOXL4 (ENSLOCG00000008953) #28	zgc:123010 (ENSLOCG00000008967)	PYROXD2 (ENSLOCG00000008976)	atpv0e2 (ENSLOCG00000008982)	ENSLOCG00000008992	ENTPD7 (ENSLOCG00000009002) #18	slc25a28 (ENSLOCG00000009024) #19	nkx3.3 (ENSLOCG00000009031)	nkx2.3 (ENSLOCG00000009050) #20	got1 (ENSLOCG00000009054) #22	CNNM1 (ENSLOCG00000009070) #23	HPSE2 (ENSLOCG00000009078) #26	hps1 (ENSLOCG00000009087) #27	st3gal7 (ENSLOCG00000009100)	ENSLOCG00000009110	ddx21 (ENSLOCG00000009123)	irf1a (ENSLOCG00000009136)	kifbp (ENSLOCG00000009142)	vps26a (ENSLOCG00000009150)	supv3l1 (ENSLOCG00000009159)	hkdc1 (ENSLOCG00000009177)	hk1 (ENSLOCG00000009187)	tacr2 (ENSLOCG00000009218)	tspan15 (ENSLOCG00000009224)	rufy2 (ENSLOCG00000009235)
Reedfish	MODERN SPECIES	10	golga7ba (ENSECRG00000000836) #31	crtac1a (ENSECRG00000000875) #30	ENSECRG00000000944 #29	LOXL4 (ENSECRG00000000973) #28	zgc:123010 (ENSECRG00000001005)	pyroxd2 (ENSECRG00000001046)	ATP6V0E2 (ENSECRG00000001091)	ENSECRG00000001109	ENTPD7 (ENSECRG00000001134) #18	slc25a28 (ENSECRG00000001160) #19	slc25a28 (ENSECRG00000001191) #19	ENSECRG00000001202	nkx3.3 (ENSECRG00000001214)	ENSECRG00000001225 #20	ENSECRG00000001228	got1 (ENSECRG00000001233) #22	CNNM1 (ENSECRG00000001361) #23	HPSE2 (ENSECRG00000001676) #26	hps1 (ENSECRG00000001819) #27	st3gal7 (ENSECRG00000001866)	ANKRD2 (ENSECRG00000001895)	hoga1 (ENSECRG00000001937)	morn4 (ENSECRG00000001966) #37	ENSECRG00000001980	ENSECRG00000001987	ENSECRG00000001996	slit1a (ENSECRG00000002016)	ARHGAP19 (ENSECRG00000002058)	ENSECRG00000002079	ENSECRG00000002106	ENSECRG00000002141
Euteleostomi	DUPLICATION
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.a ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.a ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES	213	ENSGT00510000049872 #35	ENSGT00730000112219	ENSGT00970000193827	ENSGT00510000049375 #34	ENSGT00940000165757	ENSGT00390000013298 #33	ENSGT00940000160608 #32	ENSGT00390000000134.a #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B	ENSGT00940000164861	ENSGT00940000157049 #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b
Osteoglossiformes	ANCESTRAL SPECIES	177	ENSGT00510000049375.b #34	ENSGT00940000165757.b	ENSGT00940000165757.a.b	ENSGT00390000013298 #33	ENSGT00940000160608.d #32	ENSGT00390000000134.a #31	ENSGT00390000013726.d #30	ENSGT00530000063711.b #29	ENSGT00940000157042.c.b #28	ENSGT00940000161036.B	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.b #19	ENSGT00940000157556.a.a.a #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00940000162611.b	ENSGT00940000162611.a	ENSGT00940000154965.A	ENSGT00940000157322.b.a.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000157798.b.i.a	ENSGT00390000002554.ab	ENSGT00390000001546.e	ENSGT00530000063586.a	ENSGT00390000005639.a.b.b.b
P. kingsleyae	MODERN SPECIES	18	cdc25d (ENSPKIG00000015992)	ENSPKIG00000015982	pi4k2a (ENSPKIG00000015941) #36	marveld1 (ENSPKIG00000015922) #34	ENSPKIG00000015911	zfyve27 (ENSPKIG00000015847) #33	sfrp5 (ENSPKIG00000015815) #32	golga7ba (ENSPKIG00000015794) #31	ENSPKIG00000015770 #29	LOXL4 (ENSPKIG00000015645) #28	zgc:123010 (ENSPKIG00000015521)	atpv0e2 (ENSPKIG00000015481)	ENSPKIG00000015431	ENTPD7 (ENSPKIG00000015335) #18	ENSPKIG00000015279 #20	got1 (ENSPKIG00000015231) ##22	CNNM1 (ENSPKIG00000015185) #23	hoga1 (ENSPKIG00000015141)	ENSPKIG00000015112	ENSPKIG00000015096	slit1a (ENSPKIG00000014953)	ARHGAP19 (ENSPKIG00000014888)	ENSPKIG00000014871	KCNIP2 (ENSPKIG00000014808)	armh3 (ENSPKIG00000014676)	HPS6 (ENSPKIG00000014625)	ldb1a (ENSPKIG00000014537)	map2k6 (ENSPKIG00000014459)	kcnj2a (ENSPKIG00000014425)	KCNJ16 (ENSPKIG00000014415)	galr2a (ENSPKIG00000014369)
Asian bonytongue	MODERN SPECIES	23	exosc1 (ENSSFOG00015016289)	ENSSFOG00015016277	pi4k2a (ENSSFOG00015016255) #36	ENSSFOG00015016242	marveld1 (ENSSFOG00015016233) #34	ENSSFOG00015029493	ENSSFOG00015016149	sfrp5 (ENSSFOG00015016130) #32	CRTAC1 (ENSSFOG00015016089) #30	ENSSFOG00015016044 #28	pyroxd2 (ENSSFOG00015015984)	ENSSFOG00015015940	slc25a28 (ENSSFOG00015015925) #19	nkx3.3 (ENSSFOG00015032059)	ENSSFOG00015032867 #20	got1 (ENSSFOG00015015891) ##22	HPSE2 (ENSSFOG00015015866) #26	hps1 (ENSSFOG00015015808) #27	ENSSFOG00015015789	ENSSFOG00015029523	ENSSFOG00015031827	ENSSFOG00015015746	slit1a (ENSSFOG00015015642)	ENSSFOG00015015619	ENSSFOG00015015558	cutc (ENSSFOG00015025714) #16	cox15 (ENSSFOG00015015485) #17	KCNIP2 (ENSSFOG00015015460)	ENSSFOG00015032288	ARMH3 (ENSSFOG00015015360)	HPS6 (ENSSFOG00015026018)
Clupeocephala	ANCESTRAL SPECIES	91	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00970000193827	ENSGT00510000049375 #34	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049 #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00940000177979	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.b
Euteleosteomorpha	ANCESTRAL SPECIES	68	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00730000112219	ENSGT00510000049375 #34	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00940000177979	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000170319	ENSGT00940000162611.a.b	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00940000179277
Acanthomorphata	ANCESTRAL SPECIES	16					ENSGT00940000175215.a.a	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00940000177979	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000170319	ENSGT00940000162611.a.b	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16
Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00940000177979	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.b	ENSGT00940000175336.a	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00940000177979	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.b	ENSGT00940000175336.a	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16
Tiger tail seahorse	MODERN SPECIES	108	BFSP1 (ENSHCOG00000018001)	prokr1b (ENSHCOG00000018020)	plek (ENSHCOG00000018052)	ENSHCOG00000018066	zgc:171482 (ENSHCOG00000018086)	ENSHCOG00000018091	sfrp5 (ENSHCOG00000018105) #32	GOLGA7B (ENSHCOG00000018123) #31	CRTAC1 (ENSHCOG00000018161) #30	ENSHCOG00000018186 #28	ENSHCOG00000018200 #28	zgc:123010 (ENSHCOG00000018210)	pyroxd2 (ENSHCOG00000018248)	slc25a28 (ENSHCOG00000018276) #19	nkx2.3 (ENSHCOG00000018280) #20	got1 (ENSHCOG00000018316) ##22	CNNM1 (ENSHCOG00000018366) #23	HPSE2 (ENSHCOG00000018471) #26	hps1 (ENSHCOG00000018534) #27	st3gal7 (ENSHCOG00000018649)	st3gal7 (ENSHCOG00000000764)	ENSHCOG00000018725	ENSHCOG00000018739	ENSHCOG00000018769	slit1a (ENSHCOG00000018867)	ARHGAP19 (ENSHCOG00000018882)	ENSHCOG00000018973	cutc (ENSHCOG00000019004) #16	cox15 (ENSHCOG00000019028) #17	KCNIP2 (ENSHCOG00000019056)	HPS6 (ENSHCOG00000019085)
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000177979	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.b	ENSGT00940000175336.a	ENSGT00940000168493	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b
Ovalentaria	ANCESTRAL SPECIES	18	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000177979	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.b	ENSGT00940000175336.a	ENSGT00940000168493	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000177979	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Cichlidae	ANCESTRAL SPECIES	13	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000177979	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Pseudocrenilabrinae	ANCESTRAL SPECIES	16	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000177979	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.g	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	11	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT00940000164383.h	ENSGT00940000179277	ENSGT00940000164383.g	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Haplochromini	ANCESTRAL SPECIES	10	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b.i.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT00940000164383.h.a	ENSGT00940000179277	ENSGT00940000164383.g	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Haplochromini_A	ANCESTRAL SPECIES	8	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b.i.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT00940000164383.h.a	ENSGT00940000179277	ENSGT00940000164383.g	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Haplochromini_B	ANCESTRAL SPECIES	5	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b.i.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT00940000164383.h.a	ENSGT00940000179277	ENSGT00940000164383.g	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Zebra mbuna	MODERN SPECIES	1095	ENSMZEG00005027709	ENSMZEG00005027714	pgam1a (ENSMZEG00005027718)	marveld1 (ENSMZEG00005027719) #34	ENSMZEG00005027720	zgc:171482 (ENSMZEG00005027721)	sfrp5 (ENSMZEG00005027723) #32	golga7ba (ENSMZEG00005027725) #31	CRTAC1 (ENSMZEG00005027727) #30	LOXL4 (ENSMZEG00005027731) #28	zgc:123010 (ENSMZEG00005027733)	pyroxd2 (ENSMZEG00005027734)	slc25a28 (ENSMZEG00005027738) #19	nkx3.3 (ENSMZEG00005027739)	nkx2.3 (ENSMZEG00005027740) #20	got1 (ENSMZEG00005027741) ##22	CNNM1 (ENSMZEG00005027743) #23	HPSE2 (ENSMZEG00005027745) #26	hps1 (ENSMZEG00005027746) #27	st3gal7 (ENSMZEG00005027749)	ENSMZEG00005027751	morn4 (ENSMZEG00005027754) #37	ENSMZEG00005027756	ENSMZEG00005000159	slit1a (ENSMZEG00005000186)	ARHGAP19 (ENSMZEG00005000419)	ENSMZEG00005000431	ENSMZEG00005000570	ENSMZEG00005000717	cutc (ENSMZEG00005000833) #16	cox15 (ENSMZEG00005000858) #17
Eastern happy	MODERN SPECIES	4	ENSACLG00000010571	pgam1a (ENSACLG00000010556)	marveld1 (ENSACLG00000010546) #34	ENSACLG00000010535	ENSACLG00000010524	zgc:171482 (ENSACLG00000010511)	sfrp5 (ENSACLG00000010486) #32	golga7ba (ENSACLG00000010439) #31	CRTAC1 (ENSACLG00000010222) #30	LOXL4 (ENSACLG00000010205) #28	zgc:123010 (ENSACLG00000010188)	pyroxd2 (ENSACLG00000010143)	slc25a28 (ENSACLG00000010128) #19	nkx3.3 (ENSACLG00000010124)	nkx2.3 (ENSACLG00000010118) #20	got1 (ENSACLG00000010095) ##22	CNNM1 (ENSACLG00000010047) #23	HPSE2 (ENSACLG00000009957) #26	hps1 (ENSACLG00000009914) #27	st3gal7 (ENSACLG00000009905)	ENSACLG00000009554	morn4 (ENSACLG00000009540) #37	ENSACLG00000009527	ENSACLG00000009523	slit1a (ENSACLG00000009382)	ARHGAP19 (ENSACLG00000009372)	ENSACLG00000008907	ENSACLG00000008892	ENSACLG00000008876 #15	ENSACLG00000008527	cutc (ENSACLG00000008109) #16
P. nyererei	MODERN SPECIES	431	zfand4 (ENSPNYG00000007604)	ENSPNYG00000007646	ENSPNYG00000007729	pgam1a (ENSPNYG00000007741)	ENSPNYG00000007749	marveld1 (ENSPNYG00000007758) #34	zgc:171482 (ENSPNYG00000007773)	sfrp5 (ENSPNYG00000007783) #32	golga7ba (ENSPNYG00000007803) #31	CRTAC1 (ENSPNYG00000007818) #30	LOXL4 (ENSPNYG00000007859) #28	zgc:123010 (ENSPNYG00000007893)	pyroxd2 (ENSPNYG00000007911)	slc25a28 (ENSPNYG00000007955) #19	nkx3.3 (ENSPNYG00000008015)	got1 (ENSPNYG00000008027) ##22	CNNM1 (ENSPNYG00000008062) #23	HPSE2 (ENSPNYG00000008110) #26	hps1 (ENSPNYG00000008230) #27	st3gal7 (ENSPNYG00000008303)	ENSPNYG00000008397	morn4 (ENSPNYG00000008589) #37	ENSPNYG00000008602	ENSPNYG00000008611	slit1a (ENSPNYG00000008647)	ARHGAP19 (ENSPNYG00000008747)	ENSPNYG00000008765	ENSPNYG00000008805	cutc (ENSPNYG00000008909) #16	cox15 (ENSPNYG00000009012) #17	KCNIP2 (ENSPNYG00000009028)
Burton s mouthbrooder	MODERN SPECIES	275	ENSHBUG00000023180	ENSHBUG00000023217	pgam1a (ENSHBUG00000023233)	marveld1 (ENSHBUG00000023250) #34	ENSHBUG00000000713	zgc:171482 (ENSHBUG00000023289)	sfrp5 (ENSHBUG00000023302) #32	golga7ba (ENSHBUG00000023337) #31	CRTAC1 (ENSHBUG00000023382) #30	LOXL4 (ENSHBUG00000023431) #28	zgc:123010 (ENSHBUG00000023501)	pyroxd2 (ENSHBUG00000023594)	slc25a28 (ENSHBUG00000023629) #19	nkx3.3 (ENSHBUG00000023635)	nkx2.3 (ENSHBUG00000023642) #20	got1 (ENSHBUG00000023679) ##22	CNNM1 (ENSHBUG00000023711) #23	HPSE2 (ENSHBUG00000023726) #26	hps1 (ENSHBUG00000023838) #27	st3gal7 (ENSHBUG00000002137)	ENSHBUG00000002190	morn4 (ENSHBUG00000002213) #37	ENSHBUG00000002221	ENSHBUG00000002232	slit1a (ENSHBUG00000000037)	ARHGAP19 (ENSHBUG00000002367)	ENSHBUG00000002385
Lyretail cichlid	MODERN SPECIES	295	ENSNBRG00000020995	pgam1a (ENSNBRG00000021002)	ENSNBRG00000021015	marveld1 (ENSNBRG00000021023) #34	zgc:171482 (ENSNBRG00000021035)	sfrp5 (ENSNBRG00000021056) #32	golga7ba (ENSNBRG00000021066) #31	CRTAC1 (ENSNBRG00000021083) #30	ENSNBRG00000021101 #28	ENSNBRG00000021119 #28	ENSNBRG00000021137 #28	zgc:123010 (ENSNBRG00000021157)	pyroxd2 (ENSNBRG00000021183)	slc25a28 (ENSNBRG00000021206) #19	nkx3.3 (ENSNBRG00000021221)	got1 (ENSNBRG00000021229) ##22	CNNM1 (ENSNBRG00000021257) #23	HPSE2 (ENSNBRG00000021291) #26	hps1 (ENSNBRG00000021417) #27	st3gal7 (ENSNBRG00000021500)	ENSNBRG00000021512	morn4 (ENSNBRG00000021528) #37	ENSNBRG00000021544	slit1a (ENSNBRG00000021572)	ENSNBRG00000021644
Nile tilapia	MODERN SPECIES	4	zfand4 (ENSONIG00000018374)	ENSONIG00000018368	pgam1a (ENSONIG00000018366)	marveld1 (ENSONIG00000033243) #34	ENSONIG00000033910	zgc:171482 (ENSONIG00000018365)	sfrp5 (ENSONIG00000018364) #32	golga7ba (ENSONIG00000018362) #31	CRTAC1 (ENSONIG00000018358) #30	LOXL4 (ENSONIG00000018355) #28	zgc:123010 (ENSONIG00000018353)	pyroxd2 (ENSONIG00000018349)	slc25a28 (ENSONIG00000034190) #19	nkx3.3 (ENSONIG00000018347)	nkx2-3 (ENSONIG00000034563) #20	got1 (ENSONIG00000018342) ##22	ENSONIG00000030907	CNNM1 (ENSONIG00000018340) #23	HPSE2 (ENSONIG00000018339) #26	hps1 (ENSONIG00000018337) #27	st3gal7 (ENSONIG00000018336)	ENSONIG00000018333	morn4 (ENSONIG00000018332) #37	ENSONIG00000030690	ENSONIG00000018331	ENSONIG00000039949	slit1a (ENSONIG00000018325)	ARHGAP19 (ENSONIG00000018324)	ENSONIG00000018323	ENSONIG00000030995	ENSONIG00000030255
Midas cichlid	MODERN SPECIES	452	zfand4 (ENSACIG00000021402)	ENSACIG00000021418	ENSACIG00000021475	ENSACIG00000021489	marveld1 (ENSACIG00000021493) #34	ENSACIG00000021502	zgc:171482 (ENSACIG00000021512)	sfrp5 (ENSACIG00000021531) #32	golga7ba (ENSACIG00000021626) #31	CRTAC1 (ENSACIG00000021638) #30	LOXL4 (ENSACIG00000021656) #28	zgc:123010 (ENSACIG00000021684)	pyroxd2 (ENSACIG00000021717)	slc25a28 (ENSACIG00000021745) #19	nkx3.3 (ENSACIG00000021761)	got1 (ENSACIG00000021770) ##22	CNNM1 (ENSACIG00000021793) #23	HPSE2 (ENSACIG00000021851) #26	hps1 (ENSACIG00000021933) #27	st3gal7 (ENSACIG00000021971)	ENSACIG00000022013	ENSACIG00000022140	ENSACIG00000022148	ENSACIG00000022157	slit1a (ENSACIG00000022168)	ARHGAP19 (ENSACIG00000022216)	ENSACIG00000022233	ENSACIG00000022241	ENSACIG00000022277	cutc (ENSACIG00000022346) #16	cox15 (ENSACIG00000022369) #17
Pomacentridae	ANCESTRAL SPECIES	9	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000177979	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000170319	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16
Pomacentridae_A	ANCESTRAL SPECIES	7	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000177979	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Amphiprion	ANCESTRAL SPECIES	13	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000177979	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Clown anemonefish	MODERN SPECIES	1706							sfrp5 (ENSAOCG00000006022) #32	golga7ba (ENSAOCG00000006018) #31	CRTAC1 (ENSAOCG00000000280) #30	LOXL4 (ENSAOCG00000005959) #28	zgc:123010 (ENSAOCG00000005910)	pyroxd2 (ENSAOCG00000005899)	slc25a28 (ENSAOCG00000002502) #19	nkx3.3 (ENSAOCG00000005851)	nkx2.3 (ENSAOCG00000005843) #20	got1 (ENSAOCG00000005822) ##22	CNNM1 (ENSAOCG00000005791) #23	HPSE2 (ENSAOCG00000005770) #26	hps1 (ENSAOCG00000005652) #27	st3gal7 (ENSAOCG00000005559)	ANKRD2 (ENSAOCG00000005542)	morn4 (ENSAOCG00000005518) #37	ENSAOCG00000005501	ENSAOCG00000005488
Orange clownfish	MODERN SPECIES	12	ENSAPEG00000013906	ENSAPEG00000014065	pgam1a (ENSAPEG00000014092)	marveld1 (ENSAPEG00000014120) #34	ENSAPEG00000014131	zgc:171482 (ENSAPEG00000014154)	sfrp5 (ENSAPEG00000014169) #32	golga7ba (ENSAPEG00000014181) #31	CRTAC1 (ENSAPEG00000014202) #30	LOXL4 (ENSAPEG00000014247) #28	zgc:123010 (ENSAPEG00000014305)	pyroxd2 (ENSAPEG00000014336)	slc25a28 (ENSAPEG00000014360) #19	nkx3.3 (ENSAPEG00000014379)	nkx2.3 (ENSAPEG00000014383) #20	got1 (ENSAPEG00000014394) ##22	ENSAPEG00000014414	CNNM1 (ENSAPEG00000014434) #23	HPSE2 (ENSAPEG00000014449) #26	hps1 (ENSAPEG00000014624) #27	st3gal7 (ENSAPEG00000014662)	ANKRD2 (ENSAPEG00000014682)	morn4 (ENSAPEG00000014710) #37	ENSAPEG00000014735	ENSAPEG00000014749	slit1a (ENSAPEG00000014782)	ARHGAP19 (ENSAPEG00000014919)	ENSAPEG00000014964	ENSAPEG00000014998	cutc (ENSAPEG00000015138) #16	cox15 (ENSAPEG00000015197) #17
Spiny chromis	MODERN SPECIES	279									CRTAC1 (ENSAPOG00000019545) #30	LOXL4 (ENSAPOG00000000560) #28	zgc:123010 (ENSAPOG00000019633)	pyroxd2 (ENSAPOG00000019643)	slc25a28 (ENSAPOG00000019664) #19	nkx3.3 (ENSAPOG00000019669)	nkx2.3 (ENSAPOG00000019713) #20	got1 (ENSAPOG00000019764) ##22	CNNM1 (ENSAPOG00000019783) #23	HPSE2 (ENSAPOG00000020015) #26	hps1 (ENSAPOG00000020112) #27	st3gal7 (ENSAPOG00000020131)	ANKRD2 (ENSAPOG00000020286)	morn4 (ENSAPOG00000020325) #37	ENSAPOG00000020337	ENSAPOG00000020357	slit1a (ENSAPOG00000020593)	ARHGAP19 (ENSAPOG00000020600)	ENSAPOG00000020777	cutc (ENSAPOG00000020837) #16	cox15 (ENSAPOG00000020881) #17	KCNIP2 (ENSAPOG00000020916)
Bicolor damselfish	MODERN SPECIES	405	ENSSPAG00000013847	ENSSPAG00000013802	pgam1a (ENSSPAG00000013780)	marveld1 (ENSSPAG00000013765) #34	ENSSPAG00000013756	zgc:171482 (ENSSPAG00000013724)	sfrp5 (ENSSPAG00000013711) #32	golga7ba (ENSSPAG00000013700) #31	CRTAC1 (ENSSPAG00000013676) #30	LOXL4 (ENSSPAG00000013636) #28	zgc:123010 (ENSSPAG00000013621)	pyroxd2 (ENSSPAG00000013568)	slc25a28 (ENSSPAG00000013538) #19	nkx3.3 (ENSSPAG00000013532)	nkx2.3 (ENSSPAG00000013515) #20	got1 (ENSSPAG00000013469) ##22	CNNM1 (ENSSPAG00000013414) #23	HPSE2 (ENSSPAG00000013299) #26	hps1 (ENSSPAG00000013226) #27	st3gal7 (ENSSPAG00000013210)	ENSSPAG00000013147	morn4 (ENSSPAG00000013126) #37	ENSSPAG00000013113	ENSSPAG00000013103	ENSSPAG00000013092
Atherinomorphae	ANCESTRAL SPECIES	16	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00730000111173.g #37	ENSGT00940000162611.a.b	ENSGT00940000175336.a	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Cyprinodontiformes	ANCESTRAL SPECIES	17	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00730000111173.g #37	ENSGT00940000162611.a.b	ENSGT00940000175336.a	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Aplocheiloidei	ANCESTRAL SPECIES	43	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT00940000180462	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000157798.a	ENSGT00390000001546
Mangrove rivulus	MODERN SPECIES	23							sfrp5 (ENSKMAG00000021414) #32	golga7ba (ENSKMAG00000021404) #31	CRTAC1 (ENSKMAG00000021378) #30	ENSKMAG00000021365 #28	zgc:123010 (ENSKMAG00000021350)	pyroxd2 (ENSKMAG00000021330)	slc25a28 (ENSKMAG00000021320) #19	nkx3.3 (ENSKMAG00000021316)	nkx2.3 (ENSKMAG00000021312) #20	got1 (ENSKMAG00000021303) ##22	CNNM1 (ENSKMAG00000021292) #23	HPSE2 (ENSKMAG00000021280) #26	hps1 (ENSKMAG00000021266) #27	st3gal7 (ENSKMAG00000021261)	morn4 (ENSKMAG00000021255) #37	ENSKMAG00000021243	ENSKMAG00000021239	slit1a (ENSKMAG00000021147)	ARHGAP19 (ENSKMAG00000021113)	ENSKMAG00000021103	ENSKMAG00000021067	cutc (ENSKMAG00000021035) #16	cox15 (ENSKMAG00000021015) #17	KCNIP2 (ENSKMAG00000020980)	HPS6 (ENSKMAG00000020955)
Turquoise killifish	MODERN SPECIES	1612	PGAM1B (ENSNFUG00015018538)	MARVELD1 (ENSNFUG00015018535) #34	ENSNFUG00015018533	ENSNFUG00015018529	zgc:171482 (ENSNFUG00015018528)	SFRP5 (ENSNFUG00015018523) #32	GOLGA7BB (ENSNFUG00015018520) #31	CRTAC1 (ENSNFUG00015018504) #30	ENSNFUG00015018502	LOXL4 (ENSNFUG00015018470) #28	TTC31 (ENSNFUG00015018453)	pyroxd2 (ENSNFUG00015018415)	SLC25A28 (ENSNFUG00015018407) #19	nkx3.3 (ENSNFUG00015018405)	nkx2.3 (ENSNFUG00015018403) #20	got1 (ENSNFUG00015018375) ##22	CNNM1 (ENSNFUG00015018360) #23	HPSE2 (ENSNFUG00015018350) #26	hps1 (ENSNFUG00015018344) #27	st3gal7 (ENSNFUG00015018341)	morn4 (ENSNFUG00015018340) #37	SLIT1A (ENSNFUG00015015720)	ARHGAP19 (ENSNFUG00015015367)	LCOR (ENSNFUG00015015325)	ABCC2 (ENSNFUG00015005526)	cutc (ENSNFUG00015004545) #16	cox15 (ENSNFUG00015004495) #17	ENSNFUG00015004484	ENSNFUG00015004481	KCNIP2 (ENSNFUG00015004462)	ENSNFUG00015004450
Cyprinodontoidei	ANCESTRAL SPECIES	14	ENSGT00940000170691	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00730000111173.g #37	ENSGT00940000162611.a.b	ENSGT00940000164383.b	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.a	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000157798.a	ENSGT00390000001546
Poeciliinae	ANCESTRAL SPECIES	16	ENSGT00940000170691	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00730000111173.g #37	ENSGT00940000162611.a.b	ENSGT00940000164383.b	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.a	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000157798.a	ENSGT00390000001546
Poecilia	ANCESTRAL SPECIES	11	ENSGT00940000170691	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00730000111173.g #37	ENSGT00940000162611.a.b	ENSGT00940000164383.b	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.a	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000157798.a	ENSGT00390000001546
NAME_6	ANCESTRAL SPECIES	25	ENSGT00940000170691	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00730000111173.g #37	ENSGT00940000162611.a.b	ENSGT00940000164383.b	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.a	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000157798.a	ENSGT00390000001546
Amazon molly	MODERN SPECIES	555												pyroxd2 (ENSPFOG00000012391)	slc25a28 (ENSPFOG00000012507) #19	nkx3.3 (ENSPFOG00000020885)	nkx2.3 (ENSPFOG00000012537) #20	got1 (ENSPFOG00000012559) ##22	CNNM1 (ENSPFOG00000012597) #23	HPSE2 (ENSPFOG00000012702) #26	hps1 (ENSPFOG00000012875) #27	st3gal7 (ENSPFOG00000012974)	morn4 (ENSPFOG00000013001) #37	ENSPFOG00000013017	ENSPFOG00000013051	slit1a (ENSPFOG00000013298)	ARHGAP19 (ENSPFOG00000013841)	ENSPFOG00000013897	ENSPFOG00000013938	cox15 (ENSPFOG00000014173) #17	KCNIP2 (ENSPFOG00000014204)	HPS6 (ENSPFOG00000014237)	ENSPFOG00000014261
Sailfin molly	MODERN SPECIES	231								CRTAC1 (ENSPLAG00000007804) #30	ENSPLAG00000007770 #28	ENSPLAG00000007732 #28	zgc:123010 (ENSPLAG00000007711)	pyroxd2 (ENSPLAG00000007698)	slc25a28 (ENSPLAG00000007647) #19	nkx3.3 (ENSPLAG00000007630)	nkx2.3 (ENSPLAG00000000159) #20	got1 (ENSPLAG00000007600) ##22	CNNM1 (ENSPLAG00000007571) #23	HPSE2 (ENSPLAG00000007551) #26	hps1 (ENSPLAG00000007450) #27	st3gal7 (ENSPLAG00000007373)	morn4 (ENSPLAG00000007296) #37	ENSPLAG00000007279	ENSPLAG00000007213	slit1a (ENSPLAG00000006837)	ENSPLAG00000006725	ARHGAP19 (ENSPLAG00000006706)	ENSPLAG00000006694	ENSPLAG00000006652	cutc (ENSPLAG00000006581) #16	cox15 (ENSPLAG00000006546) #17	KCNIP2 (ENSPLAG00000006537)
Guppy	MODERN SPECIES	445	ENSPREG00000019207	ENSPREG00000019215	marveld1 (ENSPREG00000019221) #34	ENSPREG00000019229	zgc:171482 (ENSPREG00000019241)	sfrp5 (ENSPREG00000019287) #32	golga7ba (ENSPREG00000019525) #31	CRTAC1 (ENSPREG00000019532) #30	ENSPREG00000019565 #28	ENSPREG00000019578 #28	zgc:123010 (ENSPREG00000019587)	pyroxd2 (ENSPREG00000019619)	slc25a28 (ENSPREG00000019641) #19	nkx3.3 (ENSPREG00000019662)	nkx2.3 (ENSPREG00000019670) #20	got1 (ENSPREG00000019685) ##22	CNNM1 (ENSPREG00000019717) #23	HPSE2 (ENSPREG00000019796) #26	hps1 (ENSPREG00000019883) #27	st3gal7 (ENSPREG00000019927)	morn4 (ENSPREG00000019999) #37	ENSPREG00000020007	ENSPREG00000020012	ENSPREG00000020025	ENSPREG00000020066	slit1a (ENSPREG00000020253)	ARHGAP19 (ENSPREG00000020307)	ENSPREG00000020339	ENSPREG00000020351	cutc (ENSPREG00000020392) #16	cox15 (ENSPREG00000020424) #17
Platyfish	MODERN SPECIES	14	ENSXMAG00000002647	pgam1a (ENSXMAG00000002644)	marveld1 (ENSXMAG00000020099) #34	ENSXMAG00000020097	zgc:171482 (ENSXMAG00000002641)	sfrp5 (ENSXMAG00000002638) #32	golga7ba (ENSXMAG00000002635) #31	CRTAC1 (ENSXMAG00000002622) #30	ENSXMAG00000029052 #28	ENSXMAG00000024239 #28	zgc:123010 (ENSXMAG00000002598)	pyroxd2 (ENSXMAG00000002582)	slc25a28 (ENSXMAG00000002580) #19	nkx3.3 (ENSXMAG00000023050)	nkx2.3 (ENSXMAG00000027829) #20	got1 (ENSXMAG00000022048) ##22	CNNM1 (ENSXMAG00000002566) #23	HPSE2 (ENSXMAG00000002558) #26	hps1 (ENSXMAG00000002534) #27	st3gal7 (ENSXMAG00000002526)	morn4 (ENSXMAG00000027912) #37	ENSXMAG00000021674	ENSXMAG00000002515	ENSXMAG00000002481	slit1a (ENSXMAG00000002408)	ARHGAP19 (ENSXMAG00000013379)	ENSXMAG00000024016	ENSXMAG00000013392	cutc (ENSXMAG00000013437) #16	cox15 (ENSXMAG00000013440) #17	KCNIP2 (ENSXMAG00000013446)
NAME_4	ANCESTRAL SPECIES	2	ENSGT00940000170691	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00730000111173.g #37	ENSGT00940000162611.a.b	ENSGT00940000164383.b	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.a	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000157798.a	ENSGT00390000001546
Mummichog	MODERN SPECIES	2448	ENSFHEG00000002187	ENSFHEG00000002203	pgam1a (ENSFHEG00000002210)	marveld1 (ENSFHEG00000002216) #34	ENSFHEG00000002220	zgc:171482 (ENSFHEG00000002233)	sfrp5 (ENSFHEG00000002237) #32	golga7ba (ENSFHEG00000002244) #31	CRTAC1 (ENSFHEG00000002264) #30	LOXL4 (ENSFHEG00000002295) #28	zgc:123010 (ENSFHEG00000002306)	pyroxd2 (ENSFHEG00000002338)	slc25a28 (ENSFHEG00000002348) #19	nkx3.3 (ENSFHEG00000002355)	nkx2.3 (ENSFHEG00000002367) #20	got1 (ENSFHEG00000002387) ##22	CNNM1 (ENSFHEG00000002420) #23	HPSE2 (ENSFHEG00000002433) #26	hps1 (ENSFHEG00000002446) #27	st3gal7 (ENSFHEG00000002456)	morn4 (ENSFHEG00000002479) #37	ENSFHEG00000000080	ENSFHEG00000002961	slit1a (ENSFHEG00000003102)	ARHGAP19 (ENSFHEG00000003120)	ENSFHEG00000003139	ENSFHEG00000003665	cutc (ENSFHEG00000003722) #16	cox15 (ENSFHEG00000003750) #17	KCNIP2 (ENSFHEG00000003779)	HPS6 (ENSFHEG00000003801)
Sheepshead minnow	MODERN SPECIES	113	ENSCVAG00000013659	pgam1a (ENSCVAG00000013643)	marveld1 (ENSCVAG00000013627) #34	ENSCVAG00000013617	zgc:171482 (ENSCVAG00000013606)	sfrp5 (ENSCVAG00000013587) #32	golga7ba (ENSCVAG00000013553) #31	CRTAC1 (ENSCVAG00000013370) #30	LOXL4 (ENSCVAG00000013336) #28	ENSCVAG00000013303 #28	zgc:123010 (ENSCVAG00000013288)	pyroxd2 (ENSCVAG00000013275)	slc25a28 (ENSCVAG00000013208) #19	nkx3.3 (ENSCVAG00000000340)	nkx2.3 (ENSCVAG00000013182) #20	got1 (ENSCVAG00000013174) ##22	CNNM1 (ENSCVAG00000013139) #23	HPSE2 (ENSCVAG00000013108) #26
Oryzias	ANCESTRAL SPECIES	6	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00970000193827	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT01100000265163	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00730000111173.g #37	ENSGT00940000162611.a.b	ENSGT00940000162611.b	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.c	ENSGT00940000164383.d
Oryzias_b	ANCESTRAL SPECIES	7	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00970000193827	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT01100000265163	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00730000111173.g #37	ENSGT00940000162611.a.b	ENSGT00940000162611.b	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.c	ENSGT00940000164383.d
Indian medaka	MODERN SPECIES	27	ENSOMEG00000003742	ENSOMEG00000003591	pgam1a (ENSOMEG00000003552)	marveld1 (ENSOMEG00000003543) #34	ENSOMEG00000003536	zgc:171482 (ENSOMEG00000003526)	sfrp5 (ENSOMEG00000003509) #32	golga7ba (ENSOMEG00000003486) #31	CRTAC1 (ENSOMEG00000003461) #30	LOXL4 (ENSOMEG00000003421) #28	zgc:123010 (ENSOMEG00000003408)	pyroxd2 (ENSOMEG00000003379)	slc25a28 (ENSOMEG00000003332) #19	nkx3.3 (ENSOMEG00000003321)	nkx2.3 (ENSOMEG00000003316) #20	got1 (ENSOMEG00000003293) ##22	CNNM1 (ENSOMEG00000003230) #23	HPSE2 (ENSOMEG00000003198) #26	hps1 (ENSOMEG00000003177) #27	st3gal7 (ENSOMEG00000003156)	morn4 (ENSOMEG00000003130) #37	ENSOMEG00000003116	slit1a (ENSOMEG00000003088)	ARHGAP19 (ENSOMEG00000003047)	ENSOMEG00000003032	ENSOMEG00000003010	ENSOMEG00000002962	cutc (ENSOMEG00000002943) #16	cox15 (ENSOMEG00000002912) #17	KCNIP2 (ENSOMEG00000002878)	HPS6 (ENSOMEG00000000730)
Javanese ricefish	MODERN SPECIES	6	ENSOJAG00000012919	ENSOJAG00000012965	pgam1a (ENSOJAG00000012978)	marveld1 (ENSOJAG00000013004) #34	ENSOJAG00000013022	zgc:171482 (ENSOJAG00000013050)	sfrp5 (ENSOJAG00000013058) #32	golga7ba (ENSOJAG00000013072) #31	CRTAC1 (ENSOJAG00000013109) #30	LOXL4 (ENSOJAG00000013309) #28	zgc:123010 (ENSOJAG00000013423)	pyroxd2 (ENSOJAG00000013451)	slc25a28 (ENSOJAG00000013902) #19	nkx3.3 (ENSOJAG00000013915)	nkx2.3 (ENSOJAG00000013921) #20	got1 (ENSOJAG00000013930) ##22	ENSOJAG00000013960	CNNM1 (ENSOJAG00000013995) #23	HPSE2 (ENSOJAG00000014022) #26	hps1 (ENSOJAG00000014107) #27	st3gal7 (ENSOJAG00000014117)	morn4 (ENSOJAG00000014128) #37	ENSOJAG00000014149	ENSOJAG00000014178	ENSOJAG00000014226	slit1a (ENSOJAG00000014244)	ARHGAP19 (ENSOJAG00000014586)	ENSOJAG00000014655	ENSOJAG00000014772	ENSOJAG00000016036	cutc (ENSOJAG00000017954) #16
Oryzias_a	ANCESTRAL SPECIES	4	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT01100000265163	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.c	ENSGT00940000164383.d	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Chinese medaka	MODERN SPECIES	557	ENSOSIG00000005055	pgam1a (ENSOSIG00000005056)	marveld1 (ENSOSIG00000005057) #34	ENSOSIG00000005059	ENSOSIG00000005060	zgc:171482 (ENSOSIG00000005061)	sfrp5 (ENSOSIG00000005063) #32	golga7ba (ENSOSIG00000005065) #31	CRTAC1 (ENSOSIG00000005087) #30	LOXL4 (ENSOSIG00000006771) #28	zgc:123010 (ENSOSIG00000007189)	pyroxd2 (ENSOSIG00000007194)	slc25a28 (ENSOSIG00000007272) #19	nkx3.3 (ENSOSIG00000007274)	nkx2.3 (ENSOSIG00000007275) #20	got1 (ENSOSIG00000007277) ##22	ENSOSIG00000007278	CNNM1 (ENSOSIG00000007279) #23	HPSE2 (ENSOSIG00000007281) #26	hps1 (ENSOSIG00000007284) #27	st3gal7 (ENSOSIG00000007303)	morn4 (ENSOSIG00000007305) #37	ENSOSIG00000007306	ENSOSIG00000007308	slit1a (ENSOSIG00000007375)	ENSOSIG00000015354
Japanese Medaka HdrR	MODERN SPECIES	6	ENSORLG00000026750	pgam1a (ENSORLG00000007592)	marveld1 (ENSORLG00000027726) #34	ENSORLG00000007598	zgc:171482 (ENSORLG00000007607)	sfrp5 (ENSORLG00000007621) #32	GOLGA7B (ENSORLG00000023120) #31	CRTAC1 (ENSORLG00000007646) #30	ENSORLG00000025258 #28	ENSORLG00000007662 #28	zgc:123010 (ENSORLG00000007675)	pyroxd2 (ENSORLG00000007699)	slc25a28 (ENSORLG00000007710) #19	nkx3.3 (ENSORLG00000007716)	nkx2.3 (ENSORLG00000007722) #20	got1 (ENSORLG00000007741) ##22	ENSORLG00000021808	CNNM1 (ENSORLG00000007759) #23	HPSE2 (ENSORLG00000028285) #26	hps1 (ENSORLG00000007785) #27	st3gal7 (ENSORLG00000007799)	morn4 (ENSORLG00000023611) #37	ENSORLG00000030348	slit1a (ENSORLG00000007918)	ENSORLG00000007936	ENSORLG00000030131	ENSORLG00000027419	ENSORLG00000008249	cutc (ENSORLG00000008290) #16	cox15 (ENSORLG00000008304) #17	KCNIP2 (ENSORLG00000008321)
Percomorphaceae_C	ANCESTRAL SPECIES	18	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000177979	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Eupercaria	ANCESTRAL SPECIES	15	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000177979	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000177979	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000157798.a
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000157798.a
Large yellow croaker	MODERN SPECIES	2	ENSLCRG00005010450	pgam1a (ENSLCRG00005010445)	marveld1 (ENSLCRG00005010443) #34	ENSLCRG00005010442	ENSLCRG00005010441	zgc:171482 (ENSLCRG00005010440)	sfrp5 (ENSLCRG00005010438) #32	golga7ba (ENSLCRG00005010435) #31	CRTAC1 (ENSLCRG00005010413) #30	LOXL4 (ENSLCRG00005010408) #28	zgc:123010 (ENSLCRG00005010405)	pyroxd2 (ENSLCRG00005010402)	slc25a28 (ENSLCRG00005010400) #19	nkx3.3 (ENSLCRG00005010398)	nkx2.3 (ENSLCRG00005010397) #20	got1 (ENSLCRG00005010334) ##22	CNNM1 (ENSLCRG00005010328) #23	HPSE2 (ENSLCRG00005010325) #26	hps1 (ENSLCRG00005010318) #27	st3gal7 (ENSLCRG00005010316)	ANKRD2 (ENSLCRG00005010315)	ENSLCRG00005010313	ENSLCRG00005010312	ENSLCRG00005010311	slit1a (ENSLCRG00005004050)	ARHGAP19 (ENSLCRG00005004020)	ENSLCRG00005004016	ENSLCRG00005000488	cutc (ENSLCRG00005000471) #16	cox15 (ENSLCRG00005000306) #17	KCNIP2 (ENSLCRG00005000223)
European seabass	MODERN SPECIES	1	ZFAND4 (ENSDLAG00005014148)	ENSDLAG00005014064	ENSDLAG00005014016	ENSDLAG00005013994 #34	ENSDLAG00005013980	zgc:171482 (ENSDLAG00005013971)	sfrp5 (ENSDLAG00005013957) #32	GOLGA7B (ENSDLAG00005013948) #31	CRTAC1 (ENSDLAG00005013859) #30	LOXL4 (ENSDLAG00005013817) #28	zgc:123010 (ENSDLAG00005013793)	pyroxd2 (ENSDLAG00005013653)	slc25a28 (ENSDLAG00005013638) #19	ENSDLAG00005031106	nkx2.3 (ENSDLAG00005013631) #20	got1 (ENSDLAG00005013544) ##22	CNNM1 (ENSDLAG00005013527) #23	HPSE2 (ENSDLAG00005013466) #26	hps1 (ENSDLAG00005013448) #27	st3gal7 (ENSDLAG00005013432)	ENSDLAG00005013417	morn4 (ENSDLAG00005033230) #37	ENSDLAG00005033715	ENSDLAG00005028742	ENSDLAG00005010818	ARHGAP19 (ENSDLAG00005010615)	ENSDLAG00005009623	ENSDLAG00005009461 #16	ENSDLAG00005009452 #17	ENSDLAG00005009376	HPS6 (ENSDLAG00005026518)
Gilthead seabream	MODERN SPECIES	6	pgam1a (ENSSAUG00010026018)	marveld1 (ENSSAUG00010026020) #34	ENSSAUG00010026021	ENSSAUG00010026022	ENSSAUG00010026023	zgc:171482 (ENSSAUG00010026024)	sfrp5 (ENSSAUG00010013011) #32	golga7ba (ENSSAUG00010013014) #31	CRTAC1 (ENSSAUG00010013019) #30	LOXL4 (ENSSAUG00010013108) #28	zgc:123010 (ENSSAUG00010013149)	pyroxd2 (ENSSAUG00010013150)	slc25a28 (ENSSAUG00010013405) #19	nkx3.3 (ENSSAUG00010013410)	nkx2.3 (ENSSAUG00010013411) #20	got1 (ENSSAUG00010013416) ##22	CNNM1 (ENSSAUG00010013427) #23	HPSE2 (ENSSAUG00010013432) #26	hps1 (ENSSAUG00010013439) #27	st3gal7 (ENSSAUG00010013443)	ANKRD2 (ENSSAUG00010013445)	ENSSAUG00010013448	ENSSAUG00010013450	ENSSAUG00010013452	ENSSAUG00010013456	slit1a (ENSSAUG00010013534)	ARHGAP19 (ENSSAUG00010020061)	ENSSAUG00010020066	ENSSAUG00010020216	cutc (ENSSAUG00010024734) #16	cox15 (ENSSAUG00010024736) #17
Perciformes	ANCESTRAL SPECIES	17	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00970000193827	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000157798.a
Cottioidei	ANCESTRAL SPECIES	17	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Lumpfish	MODERN SPECIES	6	ENSCLMG00005013432	ENSCLMG00005013431	ENSCLMG00005013430	marveld1 (ENSCLMG00005013429) #34	ENSCLMG00005013428	zgc:171482 (ENSCLMG00005013427)	sfrp5 (ENSCLMG00005013426) #32	GOLGA7B (ENSCLMG00005013410) #31	CRTAC1 (ENSCLMG00005013409) #30	LOXL4 (ENSCLMG00005013408) #28	zgc:123010 (ENSCLMG00005013407)	pyroxd2 (ENSCLMG00005013386)	slc25a28 (ENSCLMG00005013383) #19	nkx3.3 (ENSCLMG00005013382)	ENSCLMG00005013381	got1 (ENSCLMG00005013379) ##22	CNNM1 (ENSCLMG00005013377) #23	HPSE2 (ENSCLMG00005013376) #26	hps1 (ENSCLMG00005013374) #27	st3gal7 (ENSCLMG00005013372)	ENSCLMG00005013370	ENSCLMG00005013368	ENSCLMG00005013366	ENSCLMG00005013364	ENSCLMG00005013363	slit1a (ENSCLMG00005011125)	ARHGAP19 (ENSCLMG00005011089)	ENSCLMG00005011087	ENSCLMG00005005991	cutc (ENSCLMG00005005944) #16	cox15 (ENSCLMG00005005940) #17
Stickleback	MODERN SPECIES	6	ENSGACG00000007709	ENSGACG00000007703	pgam1a (ENSGACG00000007692)	marveld1 (ENSGACG00000007690) #34	ENSGACG00000007685	zgc:171482 (ENSGACG00000007680)	sfrp5 (ENSGACG00000007665) #32	golga7ba (ENSGACG00000007656) #31	CRTAC1 (ENSGACG00000007647) #30	LOXL4 (ENSGACG00000007635) #28	zgc:123010 (ENSGACG00000007620)	pyroxd2 (ENSGACG00000007586)	slc25a28 (ENSGACG00000007574) #19	nkx3.3 (ENSGACG00000007573)	nkx2.3 (ENSGACG00000007568) #20	got1 (ENSGACG00000007534) ##22	CNNM1 (ENSGACG00000007529) #23	HPSE2 (ENSGACG00000007523) #26	hps1 (ENSGACG00000007506) #27	st3gal7 (ENSGACG00000007489)	ENSGACG00000007479	ENSGACG00000007469	slit1a (ENSGACG00000007441)	ARHGAP19 (ENSGACG00000007432)	ENSGACG00000007419	cutc (ENSGACG00000007400) #16	cox15 (ENSGACG00000007381) #17	KCNIP2 (ENSGACG00000007366)	HPS6 (ENSGACG00000007363)	ENSGACG00000007331	ldb1a (ENSGACG00000007317)
Perciformes_a	ANCESTRAL SPECIES	16	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00970000193827	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000157798.a
Pike perch	MODERN SPECIES	10	ENSSLUG00000021496	ENSSLUG00000021479	ENSSLUG00000021474	marveld1 (ENSSLUG00000021471) #34	ENSSLUG00000021470	zgc:171482 (ENSSLUG00000021467)	sfrp5 (ENSSLUG00000021464) #32	golga7ba (ENSSLUG00000021452) #31	CRTAC1 (ENSSLUG00000021425) #30	LOXL4 (ENSSLUG00000021403) #28	zgc:123010 (ENSSLUG00000021394)	pyroxd2 (ENSSLUG00000021277)	slc25a28 (ENSSLUG00000021260) #19	nkx3.3 (ENSSLUG00000021257)	nkx2.3 (ENSSLUG00000021254) #20	got1 (ENSSLUG00000021245) ##22	CNNM1 (ENSSLUG00000021240) #23	HPSE2 (ENSSLUG00000021232) #26	hps1 (ENSSLUG00000021216) #27	st3gal7 (ENSSLUG00000021200)	ENSSLUG00000021193	morn4 (ENSSLUG00000021185) #37	ENSSLUG00000021182	ENSSLUG00000021178	slit1a (ENSSLUG00000021011)	ARHGAP19 (ENSSLUG00000020919)	ENSSLUG00000020904	ENSSLUG00000009434	cutc (ENSSLUG00000008760) #16	cox15 (ENSSLUG00000008671) #17	KCNIP2 (ENSSLUG00000008653)
Channel bull blenny	MODERN SPECIES	6	ENSCGOG00000015373	ENSCGOG00000015371	pgam1a (ENSCGOG00000015347)	marveld1 (ENSCGOG00000015344) #34	ENSCGOG00000015336	zgc:171482 (ENSCGOG00000015332)	sfrp5 (ENSCGOG00000015328) #32	golga7ba (ENSCGOG00000015325) #31	CRTAC1 (ENSCGOG00000015313) #30	LOXL4 (ENSCGOG00000015110) #28	zgc:123010 (ENSCGOG00000015095)	pyroxd2 (ENSCGOG00000014876)	slc25a28 (ENSCGOG00000014869) #19	nkx3.3 (ENSCGOG00000014866)	nkx2.3 (ENSCGOG00000014865) #20	got1 (ENSCGOG00000014821) ##22	CNNM1 (ENSCGOG00000014819) #23	HPSE2 (ENSCGOG00000014794) #26	hps1 (ENSCGOG00000014792) #27	st3gal7 (ENSCGOG00000014779)	ANKRD2 (ENSCGOG00000014778)	ENSCGOG00000014776	ENSCGOG00000014773	ENSCGOG00000014770	ENSCGOG00000014769	slit1a (ENSCGOG00000012624)	ARHGAP19 (ENSCGOG00000012563)	ENSCGOG00000012557	ENSCGOG00000012388	cutc (ENSCGOG00000012293) #16	cox15 (ENSCGOG00000012179) #17
Ballan wrasse	MODERN SPECIES	380							zgc:171482 (ENSLBEG00000023823)	sfrp5 (ENSLBEG00000023832) #32	golga7ba (ENSLBEG00000023858) #31	CRTAC1 (ENSLBEG00000023893) #30	ENSLBEG00000023931 #28	ENSLBEG00000023958 #28	zgc:123010 (ENSLBEG00000023984)	pyroxd2 (ENSLBEG00000024045)	slc25a28 (ENSLBEG00000024105) #19	got1 (ENSLBEG00000024148) ##22	nkx3.3 (ENSLBEG00000024201)	nkx2.3 (ENSLBEG00000024213) #20	ENSLBEG00000024221	CNNM1 (ENSLBEG00000024249) #23	HPSE2 (ENSLBEG00000024286) #26	hps1 (ENSLBEG00000024384) #27	st3gal7 (ENSLBEG00000024440)	ANKRD2 (ENSLBEG00000024460)	morn4 (ENSLBEG00000024479) #37	ENSLBEG00000024501	slit1a (ENSLBEG00000024535)
Tetraodontidae	ANCESTRAL SPECIES	7	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00730000111173.g #37	ENSGT00940000168493	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000157798.a
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	9	zfand4 (ENSTNIG00000008675)	ENSTNIG00000008676	ENSTNIG00000008677	pgam1a (ENSTNIG00000008678)	marveld1 (ENSTNIG00000000905) #34	zgc:171482 (ENSTNIG00000008679)	ENSTNIG00000008680	sfrp5 (ENSTNIG00000008681) #32	golga7ba (ENSTNIG00000008682) #31	CRTAC1 (ENSTNIG00000008683) #30	LOXL4 (ENSTNIG00000008684) #28	zgc:123010 (ENSTNIG00000001303)	pyroxd2 (ENSTNIG00000008685)	slc25a28 (ENSTNIG00000008686) #19	nkx2.3 (ENSTNIG00000005826) #20	got1 (ENSTNIG00000005827) ##22	got1 (ENSTNIG00000002758) ##22	CNNM1 (ENSTNIG00000002757) #23	HPSE2 (ENSTNIG00000002756) #26	hps1 (ENSTNIG00000002755) #27	st3gal7 (ENSTNIG00000002754)	morn4 (ENSTNIG00000002753) #37	slit1a (ENSTNIG00000005554)	ARHGAP19 (ENSTNIG00000016511)	ENSTNIG00000016512	cutc (ENSTNIG00000016513) #16	cox15 (ENSTNIG00000016514) #17	KCNIP2 (ENSTNIG00000016515)	ENSTNIG00000001347	ENSTNIG00000016516	oga (ENSTNIG00000016517)
Tetraodon	MODERN SPECIES	9	ENSTNIG00000008676	ENSTNIG00000008677	pgam1a (ENSTNIG00000008678)	marveld1 (ENSTNIG00000000905) #34	zgc:171482 (ENSTNIG00000008679)	ENSTNIG00000008680	sfrp5 (ENSTNIG00000008681) #32	golga7ba (ENSTNIG00000008682) #31	CRTAC1 (ENSTNIG00000008683) #30	LOXL4 (ENSTNIG00000008684) #28	zgc:123010 (ENSTNIG00000001303)	pyroxd2 (ENSTNIG00000008685)	slc25a28 (ENSTNIG00000008686) #19	nkx2.3 (ENSTNIG00000005826) #20	got1 (ENSTNIG00000005827) ##22	got1 (ENSTNIG00000002758) ##22	CNNM1 (ENSTNIG00000002757) #23	HPSE2 (ENSTNIG00000002756) #26	hps1 (ENSTNIG00000002755) #27	st3gal7 (ENSTNIG00000002754)	morn4 (ENSTNIG00000002753) #37	slit1a (ENSTNIG00000005554)	ARHGAP19 (ENSTNIG00000016511)	ENSTNIG00000016512	cutc (ENSTNIG00000016513) #16	cox15 (ENSTNIG00000016514) #17	KCNIP2 (ENSTNIG00000016515)	ENSTNIG00000001347	ENSTNIG00000016516	oga (ENSTNIG00000016517)	npm3 (ENSTNIG00000016518)
Fugu	MODERN SPECIES	16	zfand4 (ENSTRUG00000004042)	ENSTRUG00000004311	ENSTRUG00000005455	pgam1a (ENSTRUG00000022599)	marveld1 (ENSTRUG00000005698) #34	ENSTRUG00000022628	ENSTRUG00000032921	zgc:171482 (ENSTRUG00000005705)	sfrp5 (ENSTRUG00000021491) #32	crtac1 (ENSTRUG00000006008) #30	LOXL4 (ENSTRUG00000006359) #28	pyroxd2 (ENSTRUG00000006805)	slc25a28 (ENSTRUG00000007096) #19	nkx3.3 (ENSTRUG00000020172)	nkx2.3 (ENSTRUG00000024381) #20	got1 (ENSTRUG00000007276) ##22	cnnm1 (ENSTRUG00000007603) #23	HPSE2 (ENSTRUG00000007806) #26	hps1 (ENSTRUG00000008073) #27	ENSTRUG00000030291	ENSTRUG00000032843	ENSTRUG00000008704	slit1a (ENSTRUG00000008791)	ARHGAP19 (ENSTRUG00000009178)	ENSTRUG00000024980	abcc2 (ENSTRUG00000009329)	cutc (ENSTRUG00000010646) #16	cox15 (ENSTRUG00000024846) #17	KCNIP2 (ENSTRUG00000025958)	ENSTRUG00000028008	HPS6 (ENSTRUG00000010666)
Percomorphaceae_D	ANCESTRAL SPECIES	19	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000177979	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Anabantaria	ANCESTRAL SPECIES	17	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00970000193827	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00940000177979	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000168493	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Zig-zag eel	MODERN SPECIES	6	ENSMAMG00000000703	ENSMAMG00000000839	ENSMAMG00000000913	ENSMAMG00000000923 #34	ENSMAMG00000001014	zgc:171482 (ENSMAMG00000001031)	sfrp5 (ENSMAMG00000001048) #32	GOLGA7B (ENSMAMG00000024613) #31	CRTAC1 (ENSMAMG00000001076) #30	LOXL4 (ENSMAMG00000001127) #28	zgc:123010 (ENSMAMG00000001145)	pyroxd2 (ENSMAMG00000001200)	slc25a28 (ENSMAMG00000001280) #19	nkx3.3 (ENSMAMG00000001296)	nkx2.3 (ENSMAMG00000001312) #20	got1 (ENSMAMG00000001359) ##22	CNNM1 (ENSMAMG00000001389) #23	HPSE2 (ENSMAMG00000001454) #26	hps1 (ENSMAMG00000001615) #27	st3gal7 (ENSMAMG00000001658)	ENSMAMG00000001686	morn4 (ENSMAMG00000001711) #37	ENSMAMG00000027836	ENSMAMG00000028573	ENSMAMG00000001729	ENSMAMG00000001778	ARHGAP19 (ENSMAMG00000001865)	ENSMAMG00000001887	ENSMAMG00000001950	ENSMAMG00000002346 #16	ENSMAMG00000002386 #17
Anabantoidei	ANCESTRAL SPECIES	17	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00970000193827	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00940000177979	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Climbing perch	MODERN SPECIES	6	ENSATEG00000001472	ENSATEG00000001446	ENSATEG00000001419 #34	ENSATEG00000001393	zgc:171482 (ENSATEG00000001371)	ENSATEG00000025382	sfrp5 (ENSATEG00000001362) #32	GOLGA7B (ENSATEG00000027423) #31	CRTAC1 (ENSATEG00000001284) #30	LOXL4 (ENSATEG00000001230) #28	zgc:123010 (ENSATEG00000001220)	pyroxd2 (ENSATEG00000001168)	slc25a28 (ENSATEG00000001143) #19	nkx3.3 (ENSATEG00000028419)	nkx2.3 (ENSATEG00000001133) #20	got1 (ENSATEG00000001085) ##22	CNNM1 (ENSATEG00000000944) #23	HPSE2 (ENSATEG00000000880) #26	hps1 (ENSATEG00000000728) #27	st3gal7 (ENSATEG00000000723)	ENSATEG00000000577	ENSATEG00000029114	ENSATEG00000000532	ENSATEG00000000527	ENSATEG00000000357	ARHGAP19 (ENSATEG00000000347)	ENSATEG00000000291	ENSATEG00000000283	ENSATEG00000000242 #16	ENSATEG00000000233 #17	ENSATEG00000000183
Siamese fighting fish	MODERN SPECIES	6	sfrp5 (ENSBSLG00000022037) #32	golga7ba (ENSBSLG00000022031) #31	CRTAC1 (ENSBSLG00000021687) #30	LOXL4 (ENSBSLG00000021670) #28	pyroxd2 (ENSBSLG00000021658)	slc25a28 (ENSBSLG00000021642) #19	nkx3.3 (ENSBSLG00000021640)	nkx2.3 (ENSBSLG00000021639) #20	ENSBSLG00000021637	zgc:123010 (ENSBSLG00000021603)	pyroxd2 (ENSBSLG00000021593)	slc25a28 (ENSBSLG00000021560) #19	nkx3.3 (ENSBSLG00000021543)	nkx2.3 (ENSBSLG00000021528) #20	ENSBSLG00000021518	got1 (ENSBSLG00000021411) ##22	CNNM1 (ENSBSLG00000021316) #23	HPSE2 (ENSBSLG00000021110) #26	hps1 (ENSBSLG00000020826) #27	st3gal7 (ENSBSLG00000020817)	ANKRD2 (ENSBSLG00000020811)	ENSBSLG00000020808	ENSBSLG00000020803	ENSBSLG00000020797	ENSBSLG00000020796	slit1a (ENSBSLG00000020170)	ARHGAP19 (ENSBSLG00000020038)	ENSBSLG00000020035	ENSBSLG00000017804	cutc (ENSBSLG00000017567) #16	cox15 (ENSBSLG00000017325) #17
Carangaria	ANCESTRAL SPECIES	19	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000177979	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.b	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16
Carangaria_A	ANCESTRAL SPECIES	25	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A
Seriola	ANCESTRAL SPECIES	17	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A
Yellowtail amberjack	MODERN SPECIES	2713	ENSSLDG00000019544	pgam1a (ENSSLDG00000019539)	marveld1 (ENSSLDG00000019528) #34	ENSSLDG00000019520	zgc:171482 (ENSSLDG00000019510)	sfrp5 (ENSSLDG00000019498) #32	golga7ba (ENSSLDG00000019486) #31	CRTAC1 (ENSSLDG00000019460) #30	ENSSLDG00000019436 #28	ENSSLDG00000019427 #28	zgc:123010 (ENSSLDG00000019386)	pyroxd2 (ENSSLDG00000019341)	slc25a28 (ENSSLDG00000019324) #19	nkx3.3 (ENSSLDG00000019317)	nkx2.3 (ENSSLDG00000019312) #20	got1 (ENSSLDG00000019291) ##22	CNNM1 (ENSSLDG00000019278) #23	HPSE2 (ENSSLDG00000019240) #26	hps1 (ENSSLDG00000019199) #27	st3gal7 (ENSSLDG00000019183)	ENSSLDG00000019138	morn4 (ENSSLDG00000019122) #37	ENSSLDG00000019112
Greater amberjack	MODERN SPECIES	147	ENSSDUG00000008825	pgam1a (ENSSDUG00000008810)	marveld1 (ENSSDUG00000008794) #34	ENSSDUG00000008786	zgc:171482 (ENSSDUG00000008773)	sfrp5 (ENSSDUG00000008758) #32	golga7ba (ENSSDUG00000008742) #31	CRTAC1 (ENSSDUG00000008706) #30	ENSSDUG00000008685 #28	ENSSDUG00000008672 #28	zgc:123010 (ENSSDUG00000008651)	pyroxd2 (ENSSDUG00000008623)	slc25a28 (ENSSDUG00000008608) #19	nkx3.3 (ENSSDUG00000008602)	nkx2.3 (ENSSDUG00000008599) #20	got1 (ENSSDUG00000008579) ##22	CNNM1 (ENSSDUG00000008497) #23	HPSE2 (ENSSDUG00000008325) #26	hps1 (ENSSDUG00000008227) #27	st3gal7 (ENSSDUG00000008206)	ENSSDUG00000008145	morn4 (ENSSDUG00000008122) #37	ENSSDUG00000008112	ENSSDUG00000008108
Barramundi perch	MODERN SPECIES	14	ENSLCAG00010004244	ENSLCAG00010004237	pgam1a (ENSLCAG00010004235)	marveld1 (ENSLCAG00010004234) #34	ENSLCAG00010004232	zgc:171482 (ENSLCAG00010004228)	sfrp5 (ENSLCAG00010004224) #32	golga7ba (ENSLCAG00010004221) #31	CRTAC1 (ENSLCAG00010004209) #30	LOXL4 (ENSLCAG00010004189) #28	zgc:123010 (ENSLCAG00010004184)	pyroxd2 (ENSLCAG00010004145)	slc25a28 (ENSLCAG00010004135) #19	nkx3.3 (ENSLCAG00010004133)	nkx2.3 (ENSLCAG00010004130) #20	got1 (ENSLCAG00010004125) ##22	CNNM1 (ENSLCAG00010004120) #23	HPSE2 (ENSLCAG00010004113) #26	hps1 (ENSLCAG00010004110) #27	st3gal7 (ENSLCAG00010004103)	ENSLCAG00010004098	morn4 (ENSLCAG00010004090) #37	ENSLCAG00010004086	ENSLCAG00010004083	map7d1b (ENSLCAG00010004081)	ENSLCAG00010004074	LSM10 (ENSLCAG00010004071)	oscp1a (ENSLCAG00010004068)	ENSLCAG00010004066	zc3h12ab (ENSLCAG00010004058)	smim13 (ENSLCAG00010004056)
Pleuronectoidei	ANCESTRAL SPECIES	25	ENSGT00940000153997.b.b	ENSGT00530000064017.a	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.d #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000177979	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17
Tongue sole	MODERN SPECIES	3	ENSCSEG00000006553	ENSCSEG00000006534	PGAM1 (ENSCSEG00000006519)	marveld1 (ENSCSEG00000006515) #34	ENSCSEG00000006514	zgc:171482 (ENSCSEG00000006509)	sfrp5 (ENSCSEG00000006506) #32	golga7ba (ENSCSEG00000006502) #31	CRTAC1 (ENSCSEG00000006493) #30	LOXL4 (ENSCSEG00000006478) #28	zgc:123010 (ENSCSEG00000006468)	pyroxd2 (ENSCSEG00000006444)	slc25a28 (ENSCSEG00000006441) #19	nkx3.3 (ENSCSEG00000006437)	nkx2.3 (ENSCSEG00000006432) #20	got1 (ENSCSEG00000006415) ##22	CNNM1 (ENSCSEG00000006403) #23	HPSE2 (ENSCSEG00000006339) #26	hps1 (ENSCSEG00000006320) #27	st3gal7 (ENSCSEG00000006314)	ANKRD2 (ENSCSEG00000006304)	morn4 (ENSCSEG00000006299) #37	ENSCSEG00000006294	gtf2a1l (ENSCSEG00000006290)	ENSCSEG00000006282	ENSCSEG00000006279	ENSCSEG00000006277	nrxn1b (ENSCSEG00000006156)	erlec1 (ENSCSEG00000006132)	GPR75 (ENSCSEG00000006128)	PSME4 (ENSCSEG00000006059)
Turbot	MODERN SPECIES	6	ENSSMAG00000002635	ENSSMAG00000024696	ENSSMAG00000002692	ENSSMAG00000002697 #34	ENSSMAG00000002708	zgc:171482 (ENSSMAG00000002715)	sfrp5 (ENSSMAG00000002734) #32	GOLGA7B (ENSSMAG00000030452) #31	CRTAC1 (ENSSMAG00000002780) #30	LOXL4 (ENSSMAG00000002844) #28	zgc:123010 (ENSSMAG00000002904)	pyroxd2 (ENSSMAG00000002980)	slc25a28 (ENSSMAG00000003030) #19	nkx3.3 (ENSSMAG00000027149)	nkx2.3 (ENSSMAG00000003048) #20	got1 (ENSSMAG00000003052) ##22	ENSSMAG00000003068	CNNM1 (ENSSMAG00000003081) #23	HPSE2 (ENSSMAG00000003124) #26	hps1 (ENSSMAG00000003230) #27	st3gal7 (ENSSMAG00000003246)	ENSSMAG00000003260	morn4 (ENSSMAG00000003311) #37	ENSSMAG00000003337	ENSSMAG00000003340	ENSSMAG00000003352	ARHGAP19 (ENSSMAG00000003538)	ENSSMAG00000003547	ENSSMAG00000003582 #16	ENSSMAG00000003608 #17	ENSSMAG00000003627
Pinecone sodierfish	MODERN SPECIES	6	ENSMMDG00005008337	ENSMMDG00005008342	pi4k2a (ENSMMDG00005008344) #36	marveld1 (ENSMMDG00005008346) #34	ENSMMDG00005008349	zgc:171482 (ENSMMDG00005008352)	sfrp5 (ENSMMDG00005008355) #32	golga7ba (ENSMMDG00005008357) #31	CRTAC1 (ENSMMDG00005008370) #30	LOXL4 (ENSMMDG00005008634) #28	zgc:123010 (ENSMMDG00005009376)	pyroxd2 (ENSMMDG00005009398)	slc25a28 (ENSMMDG00005009667) #19	nkx3.3 (ENSMMDG00005009687)	nkx2.3 (ENSMMDG00005009689) #20	got1 (ENSMMDG00005009694) ##22	CNNM1 (ENSMMDG00005009709) #23	HPSE2 (ENSMMDG00005009712) #26	hps1 (ENSMMDG00005009716) #27	st3gal7 (ENSMMDG00005009720)	ENSMMDG00005009745	morn4 (ENSMMDG00005009747) #37	ENSMMDG00005009749	ENSMMDG00005009752	ENSMMDG00005009753	slit1a (ENSMMDG00005009763)	ARHGAP19 (ENSMMDG00005009773)	ENSMMDG00005009779	ENSMMDG00005009844	cutc (ENSMMDG00005011130) #16	cox15 (ENSMMDG00005011167) #17
Cod	MODERN SPECIES	6								ENSGMOG00000030430	zgc:171482 (ENSGMOG00000010508)	ENSGMOG00000030895 #28	zgc:123010 (ENSGMOG00000018473)	pyroxd2 (ENSGMOG00000018441)	slc25a28 (ENSGMOG00000011952) #19	nkx3.3 (ENSGMOG00000031636)	nkx2.3 (ENSGMOG00000035037) #20	got1 (ENSGMOG00000018387) ##22	ENSGMOG00000025126 #23	HPSE2 (ENSGMOG00000018343) #26	hps1 (ENSGMOG00000018315) #27	st3gal7 (ENSGMOG00000026694)	ENSGMOG00000022190	morn4 (ENSGMOG00000033836) #37	ENSGMOG00000027846	ENSGMOG00000027692	ENSGMOG00000018219	ENSGMOG00000018205	ENSGMOG00000025467	ENSGMOG00000018157	ENSGMOG00000018146 #16	ENSGMOG00000018132 #17	ENSGMOG00000018120
Protacanthopterygii	ANCESTRAL SPECIES	9	ENSGT00940000161036.B.a	ENSGT00940000157042.c.a.w #28	ENSGT00940000157042.c.a.x #28	ENSGT00390000013726.c #30	ENSGT00390000000134.a.d.b.a.b.a #31	ENSGT00940000160608 #32	ENSGT00940000165757.c.a	ENSGT00940000165757.d.m.b	ENSGT00510000049375 #34	ENSGT00730000112219	ENSGT00950000182926.b.d.a.a.b	ENSGT00530000064017.a	ENSGT00940000157049.c #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a.tb #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT00940000153408.A	ENSGT00950000183045.A.a.b	ENSGT00940000157134	ENSGT00390000009790	ENSGT00940000155064
Northern pike	MODERN SPECIES	5	LOXL4 (ENSELUG00000021966) #28	CRTAC1 (ENSELUG00000021908) #30	golga7ba (ENSELUG00000021864) #31	sfrp5 (ENSELUG00000021837) #32	zgc:171482 (ENSELUG00000021817)	ENSELUG00000030584	ENSELUG00000021778	marveld1 (ENSELUG00000021766) #34	ENSELUG00000021760	pi4k2a (ENSELUG00000021744) #36	ENSELUG00000021705	ENSELUG00000021674	slc25a28 (ENSELUG00000021579) #19	nkx3.3 (ENSELUG00000021562)	nkx2.3 (ENSELUG00000021555) #20	got1 (ENSELUG00000021545) ##22	CNNM1 (ENSELUG00000021501) #23	HPSE2 (ENSELUG00000021468) #26	hps1 (ENSELUG00000021455) #27	morn4 (ENSELUG00000021411) #37	ENSELUG00000021368	slit1a (ENSELUG00000021342)	ARHGAP19 (ENSELUG00000021067)	XPO5 (ENSELUG00000021008)	khdrbs2 (ENSELUG00000020898)	prim2 (ENSELUG00000020852)	rab23 (ENSELUG00000020788)	bag2 (ENSELUG00000031955)	ENSELUG00000020757	ENSELUG00000031724	ENSELUG00000028331
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.a.c ##22
Huchen	MODERN SPECIES	8097																ENSHHUG00000000995 ##22	ENSHHUG00000000980 ##22
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	235	ENSGT00940000161036.B.a.c	ENSGT00940000157042.c.a.x #28	ENSGT00390000013726.c #30	ENSGT00390000000134.a.d.b.a.b.a #31	ENSGT00940000160608.e #32	ENSGT00940000165757.c.a	ENSGT00940000165757.d.m.b	ENSGT00510000049375.h #34	ENSGT00730000112219	ENSGT00390000010434.b.d.a #36	ENSGT00950000182926.b.d.a.a.b.g	ENSGT00530000064017.a.e	ENSGT00940000157049.c.a #19	ENSGT00940000165452.a.g	ENSGT00940000157556.a.b.e #20	ENSGT00950000183082.b.b.a.a.d.a ##22	ENSGT00940000157525.b.c #23	ENSGT00390000004874.a.a.tb #26	ENSGT00390000015298 #27	ENSGT00940000163723.A.f.a	ENSGT00510000049375.g #34	ENSGT00390000010434.b.d.b #36	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.b #19	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f #20	ENSGT00950000183082.b.b.a.a.d.b ##22	ENSGT00940000157525.b.d #23	ENSGT00390000004874.a.a.ub #26	ENSGT00940000165889
Huchen	MODERN SPECIES	1252													ENSHHUG00000023326	nkx3.3 (ENSHHUG00000023327)	nkx2.3 (ENSHHUG00000023329) #20	got1 (ENSHHUG00000023333) ##22	ENSHHUG00000023347	CNNM1 (ENSHHUG00000023364) #23	HPSE2 (ENSHHUG00000023373) #26	hps1 (ENSHHUG00000023384) #27	morn4 (ENSHHUG00000023402) #37	ENSHHUG00000023406	slit1a (ENSHHUG00000023415)
Salmoninae_a	ANCESTRAL SPECIES	16	ENSGT00940000161036.B.a.c	ENSGT00940000157042.c.a.x #28	ENSGT00390000013726.c #30	ENSGT00390000000134.a.d.b.a.b.a #31	ENSGT00940000160608.e #32	ENSGT00940000165757.c.a.a	ENSGT00940000165757.d.m.b	ENSGT00510000049375.h #34	ENSGT00730000112219	ENSGT00390000010434.b.d.a #36	ENSGT00950000182926.b.d.a.a.b.g	ENSGT00530000064017.a.e	ENSGT00940000157049.c.a #19	ENSGT00940000165452.a.g	ENSGT00940000157556.a.b.e #20	ENSGT00950000183082.b.b.a.a.d.a ##22	ENSGT00940000157525.b.c #23	ENSGT00390000004874.a.a.tb #26	ENSGT00390000015298 #27	ENSGT00940000162611.a.a.b.a	ENSGT00940000154965.A.b	ENSGT00940000157322.b.a.e.a.b	ENSGT00940000157331.b.b	ENSGT00940000153408.A.ab.b	ENSGT00950000183045.A.a.b	ENSGT00940000157134.g	ENSGT00390000009790.c	ENSGT00940000155064.m	ENSGT00390000017590.c	ENSGT00940000166866.c	ENSGT00940000155008.C.pc
Oncorhynchus	ANCESTRAL SPECIES	17	ENSGT00940000161036.B.a.c	ENSGT00940000157042.c.a.x #28	ENSGT00390000013726.c #30	ENSGT00390000000134.a.d.b.a.b.a #31	ENSGT00940000160608.e #32	ENSGT00940000165757.c.a.a	ENSGT00940000165757.d.m.b	ENSGT00510000049375.h #34	ENSGT00730000112219	ENSGT00390000010434.b.d.a #36	ENSGT00950000182926.b.d.a.a.b.g	ENSGT00530000064017.a.e	ENSGT00940000157049.c.a #19	ENSGT00940000165452.a.g	ENSGT00940000157556.a.b.e #20	ENSGT00950000183082.b.b.a.a.d.a ##22	ENSGT00940000157525.b.c #23	ENSGT00390000004874.a.a.tb #26	ENSGT00390000015298 #27	ENSGT00940000162611.a.a.b.a	ENSGT00940000154965.A.b	ENSGT00940000157322.b.a.e.a.a.a	ENSGT00940000157331.b.b	ENSGT00940000153408.A.ab.b	ENSGT00950000183045.A.a.b	ENSGT00940000157134.g	ENSGT00390000009790.c	ENSGT00940000155064.m	ENSGT00390000017590.c	ENSGT00940000166866.c	ENSGT00940000155008.C.pc
Oncorhynchus_a	ANCESTRAL SPECIES	13	ENSGT00940000164861	ENSGT00940000161036.B.a.c	ENSGT00940000157042.c.a.x #28	ENSGT00390000013726.c #30	ENSGT00390000000134.a.d.b.a.b.a #31	ENSGT00940000160608.e #32	ENSGT00940000165757.c.a.a	ENSGT00940000165757.d.m.b	ENSGT00510000049375.h #34	ENSGT00390000010434.b.d.a #36	ENSGT00950000182926.b.d.a.a.b.g	ENSGT00530000064017.a.e	ENSGT00940000157049.c.a #19	ENSGT00940000165452.a.g	ENSGT00940000157556.a.b.e #20	ENSGT00950000183082.b.b.a.a.d.a ##22	ENSGT00940000157525.b.c #23	ENSGT00390000004874.a.a.tb #26	ENSGT00390000015298 #27	ENSGT00940000162611.a.a.b.a	ENSGT00940000154965.A.b	ENSGT00940000157322.b.a.e.a.a.a	ENSGT00940000157331.b.b	ENSGT00940000153408.A.ab.b	ENSGT00950000183045.A.a.b	ENSGT00940000157134.g	ENSGT00390000009790.c	ENSGT00940000155064.m	ENSGT00390000017590.c	ENSGT00940000166866.c	ENSGT00940000155008.C.pc
Chinook salmon	MODERN SPECIES		pyroxd2 (ENSOTSG00005034694)	zgc:123010 (ENSOTSG00005034718)	LOXL4 (ENSOTSG00005034720) #28	CRTAC1 (ENSOTSG00005034724) #30	golga7ba (ENSOTSG00005034732) #31	sfrp5 (ENSOTSG00005034735) #32	zgc:171482 (ENSOTSG00005034736)	ENSOTSG00005034738	marveld1 (ENSOTSG00005034739) #34	pi4k2a (ENSOTSG00005034743) #36	ENSOTSG00005034757	ENSOTSG00005034758	slc25a28 (ENSOTSG00005034771) #19	nkx3.3 (ENSOTSG00005034773)	nkx2.3 (ENSOTSG00005034778) #20	got1 (ENSOTSG00005034780) ##22	CNNM1 (ENSOTSG00005034781) #23	HPSE2 (ENSOTSG00005034782) #26	hps1 (ENSOTSG00005005581) #27	ENSOTSG00005005582	ENSOTSG00005005583	ENSOTSG00005005584	ARHGAP19 (ENSOTSG00005005585)	XPO5 (ENSOTSG00005005617)	ENSOTSG00005007655	khdrbs2 (ENSOTSG00005007669)	prim2 (ENSOTSG00005007670)	rab23 (ENSOTSG00005007673)	bag2 (ENSOTSG00005007675)	ENSOTSG00005007677	DST (ENSOTSG00005007761)
Rainbow trout	MODERN SPECIES	15	GOLGA7B (ENSOMYG00000051786) #31	ENSOMYG00000069969	ENSOMYG00000062644	sfrp5 (ENSOMYG00000021969) #32	zgc:171482 (ENSOMYG00000021987)	ENSOMYG00000050779	ENSOMYG00000062940	marveld1 (ENSOMYG00000021995) #34	ENSOMYG00000055216	ENSOMYG00000022064 #36	ENSOMYG00000022339	ENSOMYG00000022351	slc25a28 (ENSOMYG00000022375) #19	nkx3.3 (ENSOMYG00000022398)	nkx2.3 (ENSOMYG00000022417) #20	got1 (ENSOMYG00000022428) ##22	CNNM1 (ENSOMYG00000022440) #23	HPSE2 (ENSOMYG00000022482) #26	hps1 (ENSOMYG00000022522) #27	ENSOMYG00000022546	ENSOMYG00000022554	ENSOMYG00000024345	ENSOMYG00000054411	ARHGAP19 (ENSOMYG00000034469)	ENSOMYG00000034753	ENSOMYG00000056476	KHDRBS2 (ENSOMYG00000035964)	ENSOMYG00000063102	prim2 (ENSOMYG00000036018)	ENSOMYG00000051765	rab23 (ENSOMYG00000036101)
Salmo	ANCESTRAL SPECIES	23	ENSGT00940000164861	ENSGT00940000161036.B.a.c	ENSGT00940000157042.c.a.x #28	ENSGT00390000013726.c #30	ENSGT00390000000134.a.d.b.a.b.a #31	ENSGT00940000160608.e #32	ENSGT00940000165757.c.a.a	ENSGT00940000165757.d.m.b	ENSGT00510000049375.h #34	ENSGT00390000010434.b.d.a #36	ENSGT00950000182926.b.d.a.a.b.g	ENSGT00530000064017.a.e	ENSGT00940000157049.c.a #19	ENSGT00940000165452.a.g	ENSGT00940000157556.a.b.e #20	ENSGT00950000183082.b.b.a.a.d.a ##22	ENSGT00940000157525.b.c #23	ENSGT00390000004874.a.a.tb #26	ENSGT00390000015298 #27	ENSGT00940000162611.a.a.b.a	ENSGT00940000154965.A.b	ENSGT00940000157322.b.a.e.a.b	ENSGT00940000157331.b.b	ENSGT00940000153408.A.ab.a.a	ENSGT00950000183045.A.a.b	ENSGT00940000157134.g	ENSGT00390000009790.c	ENSGT00940000155064.m	ENSGT00390000017590.c	ENSGT00940000166866.c	ENSGT00940000155008.C.pc
River trout	MODERN SPECIES	9	pyroxd2 (ENSSTUG00000029431)	zgc:123010 (ENSSTUG00000029719)	LOXL4 (ENSSTUG00000029733) #28	CRTAC1 (ENSSTUG00000029788) #30	golga7ba (ENSSTUG00000030070) #31	sfrp5 (ENSSTUG00000030084) #32	zgc:171482 (ENSSTUG00000030120)	ENSSTUG00000030137	marveld1 (ENSSTUG00000030144) #34	pi4k2a (ENSSTUG00000030160) #36	ENSSTUG00000030263	ENSSTUG00000030279	slc25a28 (ENSSTUG00000030300) #19	nkx3.3 (ENSSTUG00000030314)	nkx2.3 (ENSSTUG00000030317) #20	got1 (ENSSTUG00000030324) ##22	CNNM1 (ENSSTUG00000030339) #23	HPSE2 (ENSSTUG00000033415) #26	hps1 (ENSSTUG00000033428) #27	ENSSTUG00000033539	ENSSTUG00000033530	slit1a (ENSSTUG00000033922)	ARHGAP19 (ENSSTUG00000045255)	XPO5 (ENSSTUG00000045278)	ENSSTUG00000045608	khdrbs2 (ENSSTUG00000045622)	prim2 (ENSSTUG00000045651)	rab23 (ENSSTUG00000045730)	ENSSTUG00000045744	bag2 (ENSSTUG00000045751)	ENSSTUG00000045759
Atlantic salmon	MODERN SPECIES		LOXL4 (ENSSSAG00000000522) #28	crtac1 (ENSSSAG00000000725) #30	ENSSSAG00000113491	ENSSSAG00000116855	ENSSSAG00000000967 #31	ENSSSAG00000085188	sfrp5 (ENSSSAG00000122261) #32	zgc:171482 (ENSSSAG00000000977)	ENSSSAG00000120201	ENSSSAG00000075457 #36	pgam1 (ENSSSAG00000001006)	ENSSSAG00000001009	slc25a28 (ENSSSAG00000096756) #19	nkx3.3 (ENSSSAG00000001020)	nkx2-3 (ENSSSAG00000001022) #20	got1 (ENSSSAG00000075564) ##22	CNNM1 (ENSSSAG00000075572) #23	HPSE2 (ENSSSAG00000114675) #26	hps1 (ENSSSAG00000001071) #27	ENSSSAG00000093017	ENSSSAG00000113366	ENSSSAG00000088082	ENSSSAG00000001168	ARHGAP19 (ENSSSAG00000001541)	ENSSSAG00000077679	ENSSSAG00000001853	KHDRBS2 (ENSSSAG00000001861)	prim2 (ENSSSAG00000001875)	rab23 (ENSSSAG00000092471)	bag2 (ENSSSAG00000001893)	ENSSSAG00000001900
Salmoninae	ANCESTRAL SPECIES	235	ENSGT00940000157049.c.a #19	ENSGT00940000165452.a.g	ENSGT00940000157556.a.b.e #20	ENSGT00950000183082.b.b.a.a.d.a ##22	ENSGT00940000157525.b.c #23	ENSGT00390000004874.a.a.tb #26	ENSGT00390000015298 #27	ENSGT00940000163723.A.f.a	ENSGT00510000049375.g #34	ENSGT00390000010434.b.d.b #36	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.b #19	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f #20	ENSGT00950000183082.b.b.a.a.d.b ##22	ENSGT00940000157525.b.d #23	ENSGT00390000004874.a.a.ub #26	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b.b	ENSGT00940000154965.A.a	ENSGT00940000157322.b.a.e.b	ENSGT00940000162611.a.a.b.a	ENSGT00940000154965.A.b	ENSGT00940000157322.b.a.e.a.b	ENSGT00940000157331.b.b	ENSGT00940000153408.A.ab.a.a
Huchen	MODERN SPECIES	1163													ENSHHUG00000003480	nkx3.3 (ENSHHUG00000003474)	nkx2.3 (ENSHHUG00000003468) #20	got1 (ENSHHUG00000003443) ##22	ENSHHUG00000003432	ENSHHUG00000003429 #26
Salmoninae_a	DUPLICATION
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.a.d.b.a.a ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.a.d.b.a.a ##22
Rainbow trout	MODERN SPECIES	12	ENSOMYG00000036954	ENSOMYG00000037387	ENSOMYG00000037486	agpat4 (ENSOMYG00000037674)	ENSOMYG00000038592	kcnk1b (ENSOMYG00000043033)	ENSOMYG00000048427	ENSOMYG00000071543	ENSOMYG00000043047 #34	ENSOMYG00000043052 #36	ENSOMYG00000043076	ENSOMYG00000055904	slc25a28 (ENSOMYG00000043085) #19	nkx3.3 (ENSOMYG00000043095)	nkx2.3 (ENSOMYG00000043096) #20	got1 (ENSOMYG00000043106) ##22	ENSOMYG00000043114	CNNM1 (ENSOMYG00000043115) #23	HPSE2 (ENSOMYG00000043124) #26	ENSOMYG00000050654	st3gal7 (ENSOMYG00000043139)	ENSOMYG00000043152 #37	ENSOMYG00000043163	ENSOMYG00000049940	ENSOMYG00000043157	ENSOMYG00000043182	ENSOMYG00000054489	ENSOMYG00000056488	ENSOMYG00000043343	ENSOMYG00000057240	ENSOMYG00000043263
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.a.d.b.a.a ##22
Coho salmon	MODERN SPECIES	2	ENSOKIG00005002606	pyroxd2 (ENSOKIG00005002542)	zgc:123010 (ENSOKIG00005002515)	LOXL4 (ENSOKIG00005002470) #28	CRTAC1 (ENSOKIG00005002299) #30	golga7ba (ENSOKIG00005002166) #31	sfrp5 (ENSOKIG00005002138) #32	zgc:171482 (ENSOKIG00005002110)	marveld1 (ENSOKIG00005002094) #34	PI4K2A (ENSOKIG00005002051) #36	ENSOKIG00005002018	ENSOKIG00005001992	slc25a28 (ENSOKIG00005001976) #19	nkx3.3 (ENSOKIG00005001963)	nkx2.3 (ENSOKIG00005001956) #20	got1 (ENSOKIG00005046953) ##22	CNNM1 (ENSOKIG00005046942) #23	HPSE2 (ENSOKIG00005046923) #26	hps1 (ENSOKIG00005046906) #27	ENSOKIG00005046894	ENSOKIG00005046888	slit1a (ENSOKIG00005046443)	ARHGAP19 (ENSOKIG00005046354)	XPO5 (ENSOKIG00005046247)	ENSOKIG00005046187	khdrbs2 (ENSOKIG00005046157)	prim2 (ENSOKIG00005046100)	rab23 (ENSOKIG00005046082)	bag2 (ENSOKIG00005046067)	ENSOKIG00005046062	ENSOKIG00005046036
Salmoninae_a	ANCESTRAL SPECIES	38	ENSGT00390000012017	ENSGT00940000157846.c.c	ENSGT00950000182836.b.b.b.b.l	ENSGT00940000165701.g	ENSGT00990000204854.d	ENSGT00940000155293.a.a.i	ENSGT00940000165757.c.b.b	ENSGT00940000163723.A.f.a	ENSGT00510000049375.g #34	ENSGT00390000010434.b.d.b #36	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.b #19	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f #20	ENSGT00950000183082.b.b.a.a.d.b.a.b ##22	ENSGT00950000183082.b.b.a.a.d.b.b ##22	ENSGT00940000157525.b.d #23	ENSGT00390000004874.a.a.ub #26	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b.b	ENSGT00940000154965.A.a	ENSGT00940000157322.b.a.e.b	ENSGT00970000193390.c.a.b.a.a.a	ENSGT00940000153408.A.`b	ENSGT00940000157134.h.a	ENSGT00390000009790.d	ENSGT00940000155064.n	ENSGT00390000017590.d
Salmo	ANCESTRAL SPECIES	38	ENSGT00390000012017	ENSGT00940000157846.c.c	ENSGT00950000182836.b.b.b.b.l	ENSGT00940000165701.g	ENSGT00990000204854.d	ENSGT00940000155293.a.a.i	ENSGT00940000165757.c.b.b	ENSGT00940000163723.A.f.a	ENSGT00510000049375.g #34	ENSGT00390000010434.b.d.b #36	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.a.a #19	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f #20	ENSGT00950000183082.b.b.a.a.d.b.a.b ##22	ENSGT00950000183082.b.b.a.a.d.b.b ##22	ENSGT00940000157525.b.d #23	ENSGT00390000004874.a.a.ub #26	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b.b	ENSGT00940000154965.A.a	ENSGT00940000157322.b.a.e.b	ENSGT00970000193390.c.a.b.a.a.a	ENSGT00940000153408.A.`b	ENSGT00940000157134.h.a	ENSGT00390000009790.d	ENSGT00940000155064.n	ENSGT00390000017590.d
River trout	MODERN SPECIES	1	ENSSTUG00000018109	agpat4 (ENSSTUG00000018116)	ENSSTUG00000018149	ENSSTUG00000018776	kcnk1b (ENSSTUG00000018792)	zgc:171482 (ENSSTUG00000018804)	ENSSTUG00000018821	ENSSTUG00000018828	marveld1 (ENSSTUG00000018853) #34	pi4k2a (ENSSTUG00000018858) #36	ENSSTUG00000018882	ENSSTUG00000018905	slc25a28 (ENSSTUG00000018986) #19	nkx3.3 (ENSSTUG00000019026)	nkx2.3 (ENSSTUG00000019037) #20	got1 (ENSSTUG00000019061) ##22	CNNM1 (ENSSTUG00000019181) #23	HPSE2 (ENSSTUG00000019224) #26	st3gal7 (ENSSTUG00000019350)	ENSSTUG00000030526	morn4 (ENSSTUG00000030530) #37	ENSSTUG00000030543	ENSSTUG00000030548	slit1a (ENSSTUG00000030646)	ENSSTUG00000033390	XPO5 (ENSSTUG00000033420)	ENSSTUG00000033953	khdrbs2 (ENSSTUG00000033974)	rab23 (ENSSTUG00000033997)	bag2 (ENSSTUG00000034015)	ENSSTUG00000034022
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.a.d.b.a.b ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.a.d.b.a.b ##22
Coho salmon	MODERN SPECIES	17	ENSOKIG00005012263	THBS2 (ENSOKIG00005012323)	agpat4 (ENSOKIG00005012600)	ENSOKIG00005012935	ENSOKIG00005018075	kcnk1b (ENSOKIG00005018080)	ENSOKIG00005018083	ENSOKIG00005018091	MARVELD1 (ENSOKIG00005018097) #34	ENSOKIG00005018101 #36	ENSOKIG00005018154	ENSOKIG00005018168	slc25a28 (ENSOKIG00005018176) #19	nkx3.3 (ENSOKIG00005018199)	nkx2.3 (ENSOKIG00005018206) #20	got1 (ENSOKIG00005018218) ##22	CNNM1 (ENSOKIG00005018273) #23	HPSE2 (ENSOKIG00005018314) #26	ENSOKIG00005018361	st3gal7 (ENSOKIG00005018367)	ENSOKIG00005018379	morn4 (ENSOKIG00005018386) #37	ENSOKIG00005018396	ENSOKIG00005018414	SLIT1 (ENSOKIG00005018648)	ENSOKIG00005023662	XPO5 (ENSOKIG00005023684)	ENSOKIG00005023791	ENSOKIG00005023811	ENSOKIG00005023848	ENSOKIG00005023920
Salmoninae_a	ANCESTRAL SPECIES	38	ENSGT00940000157846.c.c	ENSGT00950000182836.b.b.b.b.l	ENSGT00940000165701.g	ENSGT00990000204854.d	ENSGT00940000155293.a.a.i	ENSGT00940000165757.c.b.b	ENSGT00940000163723.A.f.a	ENSGT00510000049375.g #34	ENSGT00390000010434.b.d.b #36	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.b #19	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f #20	ENSGT00950000183082.b.b.a.a.d.b.a.b ##22	ENSGT00950000183082.b.b.a.a.d.b.b ##22	ENSGT00940000157525.b.d #23	ENSGT00390000004874.a.a.ub #26	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b.b	ENSGT00940000154965.A.a	ENSGT00940000157322.b.a.e.b	ENSGT00970000193390.c.a.b.a.a.a	ENSGT00940000153408.A.`b	ENSGT00940000157134.h.a	ENSGT00390000009790.d	ENSGT00940000155064.n	ENSGT00390000017590.d	ENSGT00940000166866.d
Oncorhynchus	ANCESTRAL SPECIES	23	ENSGT00390000011433.s.a.f	ENSGT00390000012017	ENSGT00940000157846.c.c	ENSGT00950000182836.b.b.b.b.l	ENSGT00940000165701.g	ENSGT00940000155293.a.a.i	ENSGT00940000165757.c.a.b	ENSGT01060000253683	ENSGT00510000049375.g #34	ENSGT00390000010434.b.d.b #36	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.b #19	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f #20	ENSGT00950000183082.b.b.a.a.d.b.b ##22	ENSGT00940000157525.b.d #23	ENSGT00390000004874.a.a.ub #26	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b.b	ENSGT00940000154965.A.a	ENSGT00940000157322.b.a.e.b	ENSGT00970000193390.c.a.b.a.a.a.b	ENSGT00970000193390.c.a.b.a.a.a.a.a	ENSGT00940000153408.A.`b	ENSGT00940000157134.h.a	ENSGT00390000009790.d	ENSGT00940000155064.n	ENSGT00390000017590.d
Oncorhynchus_a	ANCESTRAL SPECIES	18	ENSGT00390000011433.s.a.f	ENSGT00390000012017	ENSGT00940000157846.c.c	ENSGT00950000182836.b.b.b.b.l	ENSGT00940000165701.g	ENSGT00940000155293.a.a.i	ENSGT00940000165757.c.a.b	ENSGT01060000253683	ENSGT00510000049375.g #34	ENSGT00390000010434.b.d.b #36	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.b #19	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f #20	ENSGT00950000183082.b.b.a.a.d.b.b ##22	ENSGT00940000157525.b.d #23	ENSGT00390000004874.a.a.ub #26	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b.b	ENSGT00940000154965.A.a	ENSGT00940000157322.b.a.e.b	ENSGT00970000193390.c.a.b.a.a.a.b	ENSGT00970000193390.c.a.b.a.a.a.a.a	ENSGT00940000153408.A.`b	ENSGT00940000157134.h.a	ENSGT00390000009790.d	ENSGT00940000155064.n	ENSGT00390000017590.d
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	17	STON1 (ENSOTSG00005023892)	LHCGR (ENSOTSG00005023894)	NRXN1 (ENSOTSG00005023915)	ENSOTSG00005025370	ENSOTSG00005025372	erlec1 (ENSOTSG00005025375)	PSME4 (ENSOTSG00005026777)	ENSOTSG00005027450	ENSOTSG00005027451	THBS2 (ENSOTSG00005027465)	agpat4 (ENSOTSG00005029064)	ENSOTSG00005029107	kcnk1b (ENSOTSG00005034403)	nkx3.3 (ENSOTSG00005034405)	nkx2.3 (ENSOTSG00005034407) #20	got1 (ENSOTSG00005034411) ##22	CNNM1 (ENSOTSG00005034416) #23	HPSE2 (ENSOTSG00005034422) #26	ENSOTSG00005034426	st3gal7 (ENSOTSG00005034429)	morn4 (ENSOTSG00005034430) #37	ENSOTSG00005034432	slit1a (ENSOTSG00005034436)	XPO5 (ENSOTSG00005034518)	ENSOTSG00005034611	cpn1 (ENSOTSG00005034612) #12	rab23 (ENSOTSG00005002619)	bag2 (ENSOTSG00005002622)	ENSOTSG00005002625	DST (ENSOTSG00005002828)	ENSOTSG00005011804
Chinook salmon	MODERN SPECIES	3005		slc25a28 (ENSOTSG00005039703) #19	ENSOTSG00005039705	ENSOTSG00005039707	pi4k2a (ENSOTSG00005039727) #36	marveld1 (ENSOTSG00005039801) #34	ENSOTSG00005039803	ENSOTSG00005039814	ENSOTSG00005039818	pi4k2a (ENSOTSG00005039829) #36	ENSOTSG00005039941	ENSOTSG00005039943	slc25a28 (ENSOTSG00005039947) #19	nkx3.3 (ENSOTSG00005039949)	nkx2.3 (ENSOTSG00005039950) #20	got1 (ENSOTSG00005039951) ##22	CNNM1 (ENSOTSG00005039953) #23	HPSE2 (ENSOTSG00005039955) #26	ENSOTSG00005039960	st3gal7 (ENSOTSG00005039961)	morn4 (ENSOTSG00005039963) #37	ENSOTSG00005039967	ENSOTSG00005039966	slit1a (ENSOTSG00005039978)
Salmo	ANCESTRAL SPECIES	38	ENSGT00940000157846.c.c	ENSGT00950000182836.b.b.b.b.l	ENSGT00940000165701.g	ENSGT00990000204854.d	ENSGT00940000155293.a.a.i	ENSGT00940000165757.c.b.b	ENSGT00940000163723.A.f.a	ENSGT00510000049375.g #34	ENSGT00390000010434.b.d.b #36	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.a.a #19	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f #20	ENSGT00950000183082.b.b.a.a.d.b.a.b ##22	ENSGT00950000183082.b.b.a.a.d.b.b ##22	ENSGT00940000157525.b.d #23	ENSGT00390000004874.a.a.ub #26	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.a.b.b	ENSGT00940000154965.A.a	ENSGT00940000157322.b.a.e.b	ENSGT00970000193390.c.a.b.a.a.a	ENSGT00940000153408.A.`b	ENSGT00940000157134.h.a	ENSGT00390000009790.d	ENSGT00940000155064.n	ENSGT00390000017590.d	ENSGT00940000166866.d
Atlantic salmon	MODERN SPECIES	20	ENSSSAG00000075436	kcnk1b (ENSSSAG00000075442)	ENSSSAG00000110104	ENSSSAG00000099101	ENSSSAG00000088446 #34	ENSSSAG00000083955	ENSSSAG00000075553	ENSSSAG00000101173	ENSSSAG00000122151 #36	ENSSSAG00000105715	slc25a28 (ENSSSAG00000075557) #19	ENSSSAG00000090773	nkx3.3 (ENSSSAG00000111355)	nkx2.3 (ENSSSAG00000091368) #20	ENSSSAG00000090388	got1 (ENSSSAG00000117439) ##22	CNNM1 (ENSSSAG00000001038) #23	HPSE2 (ENSSSAG00000001058) #26	ENSSSAG00000115096	st3gal7 (ENSSSAG00000075576)	ENSSSAG00000075577	morn4 (ENSSSAG00000075578) #37	ENSSSAG00000088434	ENSSSAG00000121541	ENSSSAG00000075660	ENSSSAG00000001603	KHDRBS2 (ENSSSAG00000077738)	PRIM2 (ENSSSAG00000077752)	rab23 (ENSSSAG00000083099)	ENSSSAG00000109425	bag2 (ENSSSAG00000077777)
Otomorpha	ANCESTRAL SPECIES	55	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.e #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049 #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00940000177979	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162611.a.b	ENSGT00940000162611.b	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16
Otophysi	ANCESTRAL SPECIES	26	ENSGT00390000013106	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00950000182926.b.d.a.a.a.b	ENSGT00510000049375 #34	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.e #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049 #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162535	ENSGT00390000004632	ENSGT00940000154704.d.b	ENSGT00940000165723.b	ENSGT00440000038232	ENSGT00940000156675.c	ENSGT00940000155309.o	ENSGT00940000154445.a
Characiphysae	ANCESTRAL SPECIES	13	ENSGT00390000013106	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00950000182926.b.d.a.a.a.b	ENSGT00510000049375 #34	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.e #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049 #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162535	ENSGT00390000004632	ENSGT00940000154704.d.b	ENSGT00940000165723.b	ENSGT00940000156675.c	ENSGT00940000155309.o	ENSGT00940000154445.a	ENSGT00940000156883	ENSGT00510000047589
Characiphysae_b	ANCESTRAL SPECIES	10	ENSGT00390000013106	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00950000182926.b.d.a.a.a.b	ENSGT00510000049375 #34	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.e #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049 #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162535	ENSGT00390000004632	ENSGT00940000154704.d.b	ENSGT00940000165723.b	ENSGT00940000156675.c	ENSGT00940000155309.o	ENSGT00940000154445.a	ENSGT00940000156883	ENSGT00510000047589
Characoidei	ANCESTRAL SPECIES	5	ENSGT00390000013106	ENSGT00940000155032.k	ENSGT00390000000464	ENSGT00950000182926.b.d.a.a.a.b	ENSGT00510000049375 #34	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.e #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049 #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162535	ENSGT00390000004632	ENSGT00940000154704.d.b	ENSGT00940000165723.b	ENSGT00940000156675.c	ENSGT00940000155309.o	ENSGT00940000154445.a	ENSGT00940000156883	ENSGT00510000047589
Red-bellied piranha	MODERN SPECIES	10	mettl18 (ENSPNAG00000000356)	pgam1a (ENSPNAG00000007625)	marveld1 (ENSPNAG00000000351) #34	zgc:171482 (ENSPNAG00000007619)	sfrp5 (ENSPNAG00000000343) #32	ENSPNAG00000000340	ENSPNAG00000000338	GOLGA7B (ENSPNAG00000007606) #31	CRTAC1 (ENSPNAG00000000329) #30	LOXL4 (ENSPNAG00000000318) #28	zgc:123010 (ENSPNAG00000007579)	pyroxd2 (ENSPNAG00000000311)	slc25a28 (ENSPNAG00000000304) #19	nkx3.3 (ENSPNAG00000005540)	nkx2.3 (ENSPNAG00000005006) #20	got1 (ENSPNAG00000000299) ##22	CNNM1 (ENSPNAG00000030104) #23	HPSE2 (ENSPNAG00000030103) #26	hps1 (ENSPNAG00000030102) #27	st3gal7 (ENSPNAG00000030096)	ENSPNAG00000030093	morn4 (ENSPNAG00000030091) #37	nkx1.2la (ENSPNAG00000030090)	prkg1a (ENSPNAG00000030089)	dkk1a (ENSPNAG00000030084)	pcdh15a (ENSPNAG00000030069)	ENSPNAG00000030016	cisd1 (ENSPNAG00000030012)	DHX57 (ENSPNAG00000030009)	galm (ENSPNAG00000030001)	atl2 (ENSPNAG00000029989)
Mexicana tetra	MODERN SPECIES	17	ubtd1a (ENSAMXG00000043652)	zdhhc16a (ENSAMXG00000002308)	pgam1a (ENSAMXG00000032198)	mettl18 (ENSAMXG00000041233)	marveld1 (ENSAMXG00000002301) #34	zgc:171482 (ENSAMXG00000002299)	sfrp5 (ENSAMXG00000035696) #32	GOLGA7B (ENSAMXG00000034309) #31	CRTAC1 (ENSAMXG00000042122) #30	LOXL4 (ENSAMXG00000002265) #28	zgc:123010 (ENSAMXG00000041967)	pyroxd2 (ENSAMXG00000002255)	slc25a28 (ENSAMXG00000035752) #19	nkx3.3 (ENSAMXG00000032822)	nkx2.3 (ENSAMXG00000032911) #20	got1 (ENSAMXG00000002245) ##22	CNNM1 (ENSAMXG00000002241) #23	HPSE2 (ENSAMXG00000002240) #26	ENSAMXG00000030747	hps1 (ENSAMXG00000002227) #27	st3gal7 (ENSAMXG00000037674)	ANKRD2 (ENSAMXG00000002218)	morn4 (ENSAMXG00000029923) #37	nkx1.2la (ENSAMXG00000034353)	ENSAMXG00000031664	prkg1a (ENSAMXG00000002208)	dkk1a (ENSAMXG00000036955)	pcdh15a (ENSAMXG00000002174)	ENSAMXG00000043287	ENSAMXG00000037132	ENSAMXG00000035834
Electric eel	MODERN SPECIES	1	mettl18 (ENSEEEG00000003005)	ENSEEEG00000003008	ENSEEEG00000003014	marveld1 (ENSEEEG00000003037) #34	ENSEEEG00000003040	zgc:171482 (ENSEEEG00000003042)	sfrp5 (ENSEEEG00000003044) #32	GOLGA7B (ENSEEEG00000003050) #31	CRTAC1 (ENSEEEG00000003086) #30	LOXL4 (ENSEEEG00000003102) #28	ENSEEEG00000003295	pyroxd2 (ENSEEEG00000003301)	slc25a28 (ENSEEEG00000003354) #19	nkx3.3 (ENSEEEG00000003355)	nkx2.3 (ENSEEEG00000003356) #20	got1 (ENSEEEG00000003358) ##22	CNNM1 (ENSEEEG00000003359) #23	HPSE2 (ENSEEEG00000003368) #26	hps1 (ENSEEEG00000003372) #27	st3gal7 (ENSEEEG00000003373)	morn4 (ENSEEEG00000003374) #37	nkx1.2la (ENSEEEG00000003375)	prkg1a (ENSEEEG00000003379)	dkk1a (ENSEEEG00000003389)	pcdh15a (ENSEEEG00000003396)	ENSEEEG00000003400	cisd1 (ENSEEEG00000003401)	DHX57 (ENSEEEG00000003403)	galm (ENSEEEG00000003433)	atl2 (ENSEEEG00000003481)	hells (ENSEEEG00000004554)
Channel catfish	MODERN SPECIES	22	ZDHHC16 (ENSIPUG00000000333)	mettl18 (ENSIPUG00000000340)	pgam1a (ENSIPUG00000000343)	marveld1 (ENSIPUG00000000351) #34	ENSIPUG00000000356	zgc:171482 (ENSIPUG00000000361)	sfrp5 (ENSIPUG00000000363) #32	GOLGA7B (ENSIPUG00000000366) #31	crtac1 (ENSIPUG00000000369) #30	LOXL4 (ENSIPUG00000000704) #28	ENSIPUG00000000715	pyroxd2 (ENSIPUG00000000727)	slc25a28 (ENSIPUG00000000758) #19	nkx3.3 (ENSIPUG00000000771)	Nkx2-3 (ENSIPUG00000000774) #20	got1 (ENSIPUG00000000781) ##22	cnnm1 (ENSIPUG00000000793) #23	hpse2 (ENSIPUG00000000802) #26	hps1 (ENSIPUG00000000808) #27	st3gal7 (ENSIPUG00000000817)	ENSIPUG00000000831	morn4 (ENSIPUG00000000904)	nkx1.2la (ENSIPUG00000000917)	PRKG1 (ENSIPUG00000000923)	dkk1a (ENSIPUG00000001048)	pcdh15a (ENSIPUG00000001088)	ENSIPUG00000002311	ckba (ENSIPUG00000002321)	ENSIPUG00000002368	ENSIPUG00000002379	Cisd1 (ENSIPUG00000002387)
Cyprinoidei	ANCESTRAL SPECIES	38	ENSGT00390000003939.c	ENSGT00390000003939.d	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d.j	ENSGT00510000049375.c #34	ENSGT00940000165757.d	ENSGT00940000160608 #32	ENSGT00390000000134.a.e #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049 #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g #37	ENSGT00940000162535	ENSGT00390000004632	ENSGT00940000154704.d.b	ENSGT00940000165723.b	ENSGT00440000038232	ENSGT00940000156675.c	ENSGT00940000155309.o	ENSGT00940000154445.a	ENSGT00950000183132.B
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	166	ENSGT00940000157565.n	ENSGT00940000162787.c.a	ENSGT00390000003939.c	ENSGT00390000008727.a.a.d.j.b	ENSGT00510000049375.c.a.b #34	ENSGT00940000165757.d.s.b	ENSGT00940000160608.h #32	ENSGT00390000000134.a.e.b #31	ENSGT00390000013726.c.a #30	ENSGT00940000157042.c.a.b #28	ENSGT00940000161036.B.a.a	ENSGT00940000164861.b	ENSGT00940000157049.e.a #19	ENSGT00940000165452.a.e.a	ENSGT00940000157556.a.b.a #20	ENSGT00950000183082.b.b.a.a.e ##22	ENSGT00940000157525.b.b #23	ENSGT00390000004874.a.a.sb #26	ENSGT00390000015298.h #27	ENSGT00730000111173.g.a.b #37	ENSGT00940000162535.a	ENSGT00940000154704.d.b.d.a.b	ENSGT00940000165723.b.c	ENSGT00940000156675.c.d	ENSGT00940000155309.o.a	ENSGT00940000154445.a.a	ENSGT00390000003094.eb	ENSGT00950000183037.B.a.m	ENSGT00950000182992.a.b.a.a.d	ENSGT00940000157736.r	ENSGT01100000263502.A.a.b.c
Cyprininae_a	ANCESTRAL SPECIES	29	ENSGT00940000157565.n	ENSGT00940000162787.c.a	ENSGT00390000003939.c	ENSGT00390000008727.a.a.d.j.b	ENSGT00510000049375.c.a.b #34	ENSGT00940000165757.d.s.b	ENSGT00940000160608.h #32	ENSGT00390000000134.a.e.b #31	ENSGT00390000013726.c.a #30	ENSGT00940000157042.c.a.b #28	ENSGT00940000161036.B.a.a	ENSGT00940000164861.b	ENSGT00940000157049.e.a #19	ENSGT00940000165452.a.e.a	ENSGT00940000157556.a.b.a #20	ENSGT00950000183082.b.b.a.a.e ##22	ENSGT00940000157525.b.b #23	ENSGT00390000004874.a.a.sb #26	ENSGT00390000015298.h #27	ENSGT00730000111173.g.a.b #37	ENSGT00940000162535.a	ENSGT00940000154704.d.b.d.a.b	ENSGT00940000165723.b.c	ENSGT00940000156675.c.d	ENSGT00940000155309.o.a	ENSGT00940000154445.a.a	ENSGT01030000236031	ENSGT00390000003094.eb	ENSGT00950000183037.B.a.m	ENSGT00950000182992.a.b.a.a.d	ENSGT00940000157736.r
Common carp reference	MODERN SPECIES	18	col9a1b (ENSCCRG00000056439)	fam135a (ENSCCRG00000032867)	zgc:172136 (ENSCCRG00000032840)	ENSCCRG00000032856	ENSCCRG00000067128	ENSCCRG00000064721 #34	zgc:171482 (ENSCCRG00000077809)	sfrp5 (ENSCCRG00000061041) #32	GOLGA7B (ENSCCRG00000057182) #31	CRTAC1 (ENSCCRG00000081317) #30	LOXL4 (ENSCCRG00000002090) #28	zgc:123010 (ENSCCRG00000076868)	pyroxd2 (ENSCCRG00000051963)	slc25a28 (ENSCCRG00000068571) #19	nkx3.3 (ENSCCRG00000035993)	got1 (ENSCCRG00000036001) ##22	nkx2.3 (ENSCCRG00000035995) #20	CNNM1 (ENSCCRG00000080110) #23	ENSCCRG00000067066	HPSE2 (ENSCCRG00000001819) #26	hps1 (ENSCCRG00000072134) #27	ENSCCRG00000075057	morn4 (ENSCCRG00000001790) #37	nkx1.2la (ENSCCRG00000056769)	prkg1a (ENSCCRG00000029561)	prkg1a (ENSCCRG00000013414)	dkk1a (ENSCCRG00000013419)	pcdh15a (ENSCCRG00000021498)	ENSCCRG00000057618	ENSCCRG00000044967	cisd1 (ENSCCRG00000064079)
Golden-line barbel	MODERN SPECIES	76			pcdh10b (ENSSGRG00000039441)	ENSSGRG00000039455	adra1bb (ENSSGRG00000039456)	adh5 (ENSSGRG00000039460)	eif4ea (ENSSGRG00000039472)	gar1 (ENSSGRG00000039477)	CRTAC1 (ENSSGRG00000039483) #30	LOXL4 (ENSSGRG00000039488) #28	zgc:123010 (ENSSGRG00000039496)	pyroxd2 (ENSSGRG00000039502)	slc25a28 (ENSSGRG00000039505) #19	nkx3.3 (ENSSGRG00000039506)	nkx2.3 (ENSSGRG00000039508) #20	got1 (ENSSGRG00000039513) ##22	ENSSGRG00000039534 #23	HPSE2 (ENSSGRG00000039537) #26	hps1 (ENSSGRG00000039548) #27	st3gal7 (ENSSGRG00000039553)	ANKRD2 (ENSSGRG00000039555)	ENSSGRG00000039556	nkx1.2la (ENSSGRG00000039560)	prkg1a (ENSSGRG00000039565)	dkk1a (ENSSGRG00000039601)	pcdh15a (ENSSGRG00000039622)	ENSSGRG00000039711	ENSSGRG00000039716	cisd1 (ENSSGRG00000039719)	ENSSGRG00000039723	nanp (ENSSGRG00000039728)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	4	eif3s6ip (ENSCARG00000020859)	SMOC2 (ENSCARG00000020807)	dact2 (ENSCARG00000020795)	ablim1a (ENSCARG00000020260)	ENSCARG00000020216	fhip2a (ENSCARG00000019575)	zfyve21 (ENSCARG00000019523)	MDGA1 (ENSCARG00000019162)	ENSCARG00000019133	LOXL4 (ENSCARG00000019129) #28	zgc:123010 (ENSCARG00000019115)	pyroxd2 (ENSCARG00000019047)	slc25a28 (ENSCARG00000019023) #19	nkx3.3 (ENSCARG00000019016)	nkx2.3 (ENSCARG00000019008) #20	got1 (ENSCARG00000018955) ##22	CNNM1 (ENSCARG00000018945) #23	ENSCARG00000018939 #26	dkk1a (ENSCARG00000018928)	nkx1.2la (ENSCARG00000018921)	prkg1a (ENSCARG00000018840)	utp25 (ENSCARG00000018801)	SYT14 (ENSCARG00000018786)	SERTAD4 (ENSCARG00000018781)	hif1aa (ENSCARG00000018698)	ENSCARG00000018683	dhrs7 (ENSCARG00000018673)	ppm1aa (ENSCARG00000018657)	ly6pge (ENSCARG00000018652)	ENSCARG00000018615	MYOF (ENSCARG00000015344)
Goldfish	MODERN SPECIES	4	NIN (ENSCARG00000002423)	pygl (ENSCARG00000002133)	trim9 (ENSCARG00000001975)	tmx1 (ENSCARG00000001934)	frmd6 (ENSCARG00000036946)	esr2b (ENSCARG00000036798)	ENSCARG00000036761	gphb5 (ENSCARG00000036755)	KCNH5 (ENSCARG00000036613)	ppp2r5eb (ENSCARG00000036391)	SGPP1 (ENSCARG00000036371)	SYT16 (ENSCARG00000036358)	ENSCARG00000036334	ENSCARG00000036328	ENSCARG00000036315	got1 (ENSCARG00000036264) ##22	ENSCARG00000036246 #23	HPSE2 (ENSCARG00000036161) #26	ENSCARG00000036144	morn4 (ENSCARG00000036134) #37	nkx1.2la (ENSCARG00000036120)	prkg1a (ENSCARG00000035973)	dkk1a (ENSCARG00000035957)	ENSCARG00000035947	pcdh15a (ENSCARG00000027824)	cisd1 (ENSCARG00000027451)	nanp (ENSCARG00000027436)	cyp1b1 (ENSCARG00000027420)	ENSCARG00000027398	cdc42ep3 (ENSCARG00000027386)	opn3 (ENSCARG00000027367)
Cyprininae	ANCESTRAL SPECIES	4	ENSGT00940000162787.c.b	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d.j.a	ENSGT00510000049375.c.a.a #34	ENSGT00510000049375.c.b #34	ENSGT00940000165757.d.s.a	ENSGT00940000160608.g #32	ENSGT00390000000134.a.e.a #31	ENSGT00390000013726.c.b #30	ENSGT00940000157042.c.a.a #28	ENSGT00940000161036.B.a.b	ENSGT00940000164861.a	ENSGT00940000157049.f #19	ENSGT00940000165452.a.e.b	ENSGT00940000157556.a.b.b #20	ENSGT00950000183082.b.b.a.a.f ##22	ENSGT00940000157525.b.a #23	ENSGT00390000004874.a.a.rb.a #26	ENSGT00390000015298.g #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g.a.a #37	ENSGT00940000162535.b	ENSGT00940000154704.d.b.d.a.a	ENSGT00390000004632	ENSGT00940000154704.d.b.c	ENSGT00940000165723.b.d	ENSGT00940000156675.c.c	ENSGT00940000155309.o.b	ENSGT00940000154445.a.b	ENSGT00950000183132.B
Cyprininae_a	ANCESTRAL SPECIES	202	ENSGT00940000162787.c.b	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d.j.a	ENSGT00510000049375.c.a.a #34	ENSGT00510000049375.c.b #34	ENSGT00940000165757.d.s.a	ENSGT00940000160608.g #32	ENSGT00390000000134.a.e.a #31	ENSGT00390000013726.c.b #30	ENSGT00940000157042.c.a.a #28	ENSGT00940000161036.B.a.b	ENSGT00940000164861.a	ENSGT00940000157049.f #19	ENSGT00940000165452.a.e.b	ENSGT00940000157556.a.b.b #20	ENSGT00950000183082.b.b.a.a.f ##22	ENSGT00940000157525.b.a #23	ENSGT00390000004874.a.a.rb.a #26	ENSGT00390000015298.g #27	ENSGT00940000165889	ENSGT00940000153956.b	ENSGT00730000111173.g.a.a #37	ENSGT00940000162535.b	ENSGT00940000154704.d.b.d.a.a	ENSGT00390000004632	ENSGT00940000154704.d.b.c	ENSGT00940000165723.b.d	ENSGT00940000156675.c.c	ENSGT00940000155309.o.b	ENSGT00940000154445.a.b	ENSGT00950000183132.B
Golden-line barbel	MODERN SPECIES	296		col9a1b (ENSSGRG00000025991)	ENSSGRG00000025989	zgc:172136 (ENSSGRG00000025987)	SLC35F3 (ENSSGRG00000025982)	marveld1 (ENSSGRG00000025981) #34	ENSSGRG00000025978	sfrp5 (ENSSGRG00000025975) #32	GOLGA7B (ENSSGRG00000025971) #31	CRTAC1 (ENSSGRG00000025970) #30	LOXL4 (ENSSGRG00000025837) #28	zgc:123010 (ENSSGRG00000025836)	pyroxd2 (ENSSGRG00000025778)	slc25a28 (ENSSGRG00000025777) #19	nkx2.3 (ENSSGRG00000025775) #20	got1 (ENSSGRG00000025773) ##22	CNNM1 (ENSSGRG00000025771) #23	HPSE2 (ENSSGRG00000025762) #26	hps1 (ENSSGRG00000025761) #27	st3gal7 (ENSSGRG00000025760)	morn4 (ENSSGRG00000025759) #37	nkx1.2la (ENSSGRG00000025758)	ENSSGRG00000025757	ENSSGRG00000025754	dkk1a (ENSSGRG00000025751)	pcdh15a (ENSSGRG00000025496)
Common carp reference	MODERN SPECIES	48	fam135a (ENSCCRG00000032891)	zgc:172136 (ENSCCRG00000024428)	ENSCCRG00000002885	ENSCCRG00000082523	marveld1 (ENSCCRG00000061224) #34	zgc:171482 (ENSCCRG00000054354)	sfrp5 (ENSCCRG00000059427) #32	CRTAC1 (ENSCCRG00000038325) #30	GOLGA7B (ENSCCRG00000023763) #31	ENSCCRG00000042003 #28	zgc:123010 (ENSCCRG00000051966)	pyroxd2 (ENSCCRG00000024966)	slc25a28 (ENSCCRG00000024950) #19	nkx3.3 (ENSCCRG00000048165)	nkx2.3 (ENSCCRG00000051959) #20	got1 (ENSCCRG00000016069) ##22	CNNM1 (ENSCCRG00000051557) #23	HPSE2 (ENSCCRG00000020309) #26	hps1 (ENSCCRG00000031229) #27	st3gal7 (ENSCCRG00000030262)	ENSCCRG00000030260	morn4 (ENSCCRG00000074100) #37	nkx1.2la (ENSCCRG00000039674)	ENSCCRG00000077794	prkg1a (ENSCCRG00000068391)	dkk1a (ENSCCRG00000031556)	pcdh15a (ENSCCRG00000068216)	ENSCCRG00000058992	cisd1 (ENSCCRG00000066341)	polr1b (ENSCCRG00000045007)	ENSCCRG00000080158
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	343	fam135a (ENSCARG00000052542)	zgc:172136 (ENSCARG00000052471)	ENSCARG00000052450	SLC35F3 (ENSCARG00000052425)	marveld1 (ENSCARG00000052412) #34	zgc:171482 (ENSCARG00000052388)	sfrp5 (ENSCARG00000052367) #32	GOLGA7B (ENSCARG00000052355) #31	CRTAC1 (ENSCARG00000051270) #30	LOXL4 (ENSCARG00000051164) #28	zgc:123010 (ENSCARG00000051020)	pyroxd2 (ENSCARG00000050386)	slc25a28 (ENSCARG00000050350) #19	nkx3.3 (ENSCARG00000050342)	nkx2.3 (ENSCARG00000050323) #20	got1 (ENSCARG00000050305) ##22	CNNM1 (ENSCARG00000050265) #23	HPSE2 (ENSCARG00000050182) #26	hps1 (ENSCARG00000049925) #27	st3gal7 (ENSCARG00000049890)	ANKRD2 (ENSCARG00000049819)	morn4 (ENSCARG00000049795) #37	nkx1.2la (ENSCARG00000049782)	prkg1a (ENSCARG00000049740)	dkk1a (ENSCARG00000049720)	pcdh15a (ENSCARG00000048883)	ENSCARG00000048787	cisd1 (ENSCARG00000048752)	polr1b (ENSCARG00000048483)	nanp (ENSCARG00000048443)	cyp1b1 (ENSCARG00000048427)
Goldfish	MODERN SPECIES	31	SDHAF4 (ENSCARG00000068213)	smap1 (ENSCARG00000068232)	b3gat2 (ENSCARG00000068307)	OGFRL1 (ENSCARG00000068324)	asrgl1 (ENSCARG00000068335)	sfrp5 (ENSCARG00000068349) #32	GOLGA7B (ENSCARG00000068356) #31	CRTAC1 (ENSCARG00000068383) #30	ENSCARG00000068689	LOXL4 (ENSCARG00000068696) #28	zgc:123010 (ENSCARG00000068708)	pyroxd2 (ENSCARG00000068734)	slc25a28 (ENSCARG00000068831) #19	nkx3.3 (ENSCARG00000068839)	nkx2.3 (ENSCARG00000068846) #20	got1 (ENSCARG00000068854) ##22	CNNM1 (ENSCARG00000068864) #23	HPSE2 (ENSCARG00000068866) #26	cxcl12a (ENSCARG00000068871)	drgx (ENSCARG00000068874)	ENSCARG00000068877	vstm4a (ENSCARG00000068878)	LRRC18 (ENSCARG00000068886)	ENSCARG00000068894	ENSCARG00000068915	ARHGAP22 (ENSCARG00000068922)	mapk8a (ENSCARG00000068974)	ENSCARG00000069249	ENSCARG00000069261	GDF10 (ENSCARG00000069266)	prdm8 (ENSCARG00000069269)
Zebrafish	MODERN SPECIES	4	ENSDARG00000079055	ENSDARG00000092550	ENSDARG00000075970	SLC35F3 (ENSDARG00000059850)	marveld1 (ENSDARG00000011724) #34	zgc:171482 (ENSDARG00000074415)	sfrp5 (ENSDARG00000039041) #32	GOLGA7B (ENSDARG00000105099) #31	CRTAC1 (ENSDARG00000102517) #30	LOXL4 (ENSDARG00000025089) #28	zgc:123010 (ENSDARG00000039082)	pyroxd2 (ENSDARG00000014101)	slc25a28 (ENSDARG00000052994) #19	nkx3.3 (ENSDARG00000069327)	nkx2.3 (ENSDARG00000039095) #20	got1 (ENSDARG00000039093) ##22	CNNM1 (ENSDARG00000078087) #23	HPSE2 (ENSDARG00000078163) #26	hps1 (ENSDARG00000026170) #27	st3gal7 (ENSDARG00000039064)	ANKRD2 (ENSDARG00000002722)	morn4 (ENSDARG00000039062) #37	nkx1.2la (ENSDARG00000006350)	prkg1a (ENSDARG00000020656)	dkk1a (ENSDARG00000014103)	ENSDARG00000101911	pcdh15a (ENSDARG00000098257)	ENSDARG00000109618	ENSDARG00000076699	cisd1 (ENSDARG00000079516)	polr1b (ENSDARG00000077469)
Clupeiformes	ANCESTRAL SPECIES	146	ENSGT00940000165757.c.b.b	ENSGT00940000160608 #32	ENSGT00390000000134.a.e #31	ENSGT00390000013726.c #30	ENSGT00940000157042.c.a #28	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049 #19	ENSGT00940000165452.a	ENSGT00940000157556.a.b #20	ENSGT00940000177979	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.a ##22	ENSGT00940000157525.b #23	ENSGT00390000004874.a.a #26	ENSGT00390000015298 #27	ENSGT00940000165889	ENSGT00940000153956.b
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	4	ENSCHAG00000009123	PI4K2A (ENSCHAG00000009115) #36	marveld1 (ENSCHAG00000009102) #34	zgc:171482 (ENSCHAG00000009081)	sfrp5 (ENSCHAG00000009066) #32	GOLGA7B (ENSCHAG00000008889) #31	CRTAC1 (ENSCHAG00000008481) #30	LOXL4 (ENSCHAG00000008097) #28	zgc:123010 (ENSCHAG00000008078)	pyroxd2 (ENSCHAG00000007272)	slc25a28 (ENSCHAG00000007238) #19	ENSCHAG00000007211	got1 (ENSCHAG00000007159) ##22	nkx2.3 (ENSCHAG00000007059) #20	ENSCHAG00000007034	got1 (ENSCHAG00000006994) ##22	CNNM1 (ENSCHAG00000006990) #23	HPSE2 (ENSCHAG00000006872) #26	hps1 (ENSCHAG00000006731) #27	st3gal7 (ENSCHAG00000006723)	ENSCHAG00000006713	ENSCHAG00000003211	ENSCHAG00000003045	ENSCHAG00000003010	ENSCHAG00000002982	smndc1 (ENSCHAG00000002928)	ADD3 (ENSCHAG00000002808)	ENSCHAG00000002762	ENSCHAG00000002359	ENSCHAG00000024852	ENSCHAG00000024846
Atlantic herring	MODERN SPECIES	4	ubtd1b (ENSCHAG00000009204)	zdhhc16a (ENSCHAG00000009157)	mettl18 (ENSCHAG00000009147)	ENSCHAG00000009123	PI4K2A (ENSCHAG00000009115) #36	marveld1 (ENSCHAG00000009102) #34	zgc:171482 (ENSCHAG00000009081)	sfrp5 (ENSCHAG00000009066) #32	GOLGA7B (ENSCHAG00000008889) #31	CRTAC1 (ENSCHAG00000008481) #30	LOXL4 (ENSCHAG00000008097) #28	zgc:123010 (ENSCHAG00000008078)	pyroxd2 (ENSCHAG00000007272)	slc25a28 (ENSCHAG00000007238) #19	ENSCHAG00000007211	got1 (ENSCHAG00000007159) ##22	nkx2.3 (ENSCHAG00000007059) #20	ENSCHAG00000007034	got1 (ENSCHAG00000006994) ##22	CNNM1 (ENSCHAG00000006990) #23	HPSE2 (ENSCHAG00000006872) #26	hps1 (ENSCHAG00000006731) #27	st3gal7 (ENSCHAG00000006723)	ENSCHAG00000006713	ENSCHAG00000003211	ENSCHAG00000003045	ENSCHAG00000003010	ENSCHAG00000002982	smndc1 (ENSCHAG00000002928)	ADD3 (ENSCHAG00000002808)	ENSCHAG00000002762
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	13	baiap2l2b (ENSDCDG00000002350)	ncf4 (ENSDCDG00000002348)	IFT27 (ENSDCDG00000002346)	slc25a38b (ENSDCDG00000002345)	rpsa (ENSDCDG00000002337)	ttc26 (ENSDCDG00000002306)	ubn2a (ENSDCDG00000002299)	ENSDCDG00000002295	nptxrb (ENSDCDG00000002289)	ENSDCDG00000002287	ENSDCDG00000002188	atpv0e2 (ENSDCDG00000002173)	ENSDCDG00000002170	ENTPD7 (ENSDCDG00000002163) #18	ENSDCDG00000002154 #20	GOT1 (ENSDCDG00000002146) ##22	ENSDCDG00000002139 #23	ENSDCDG00000002133	hoga1 (ENSDCDG00000002126)	MORN4 (ENSDCDG00000002121) #37	ENSDCDG00000002115	ENSDCDG00000002106	slit1b (ENSDCDG00000001399)	ARHGAP19 (ENSDCDG00000001323)	KCNIP2 (ENSDCDG00000001316)	armh3 (ENSDCDG00000001301)	ldb1b (ENSDCDG00000001084)	si:dkey-93h22.8 (ENSDCDG00000001043)	ENSDCDG00000001004	cant1b (ENSDCDG00000000981)	afmid (ENSDCDG00000000971)
Denticle herring	MODERN SPECIES	11	pgam1a (ENSDCDG00000016692)	marveld1 (ENSDCDG00000016694) #34	ENSDCDG00000016695	zgc:171482 (ENSDCDG00000016698)	sfrp5 (ENSDCDG00000016702) #32	GOLGA7B (ENSDCDG00000016703) #31	CRTAC1 (ENSDCDG00000016710) #30	LOXL4 (ENSDCDG00000016723) #28	zgc:123010 (ENSDCDG00000017041)	pyroxd2 (ENSDCDG00000017052)	ENSDCDG00000017497	ENSDCDG00000017503	slc25a28 (ENSDCDG00000017509) #19	nkx3.3 (ENSDCDG00000017510)	ENSDCDG00000017511	got1 (ENSDCDG00000017514) ##22	CNNM1 (ENSDCDG00000017527) #23	HPSE2 (ENSDCDG00000017533) #26	hps1 (ENSDCDG00000017544) #27	st3gal7 (ENSDCDG00000017558)	ENSDCDG00000017570	FDXR (ENSDCDG00000017618)	ENSDCDG00000019083	unk (ENSDCDG00000019093)	TNNT1 (ENSDCDG00000019119)	ENSDCDG00000019207	ENSDCDG00000020798	st6galnac1.1 (ENSDCDG00000020799)	CASKIN2 (ENSDCDG00000020802)	nme2a (ENSDCDG00000020812)	ca10a (ENSDCDG00000020817)
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.b ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.b ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.b ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.b ##22
Mammalia	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.b ##22
Theria	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.b ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.b ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.b ##22
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.b ##22
Primates	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.b ##22
Strepsirrhini	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.b ##22
Lemuriformes	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.b ##22
Mouse lemur	MODERN SPECIES	12	TM2D2 (ENSMICG00000003590)	ENSMICG00000045541	PLEKHA2 (ENSMICG00000003578)	TACC1 (ENSMICG00000003570)	FGFR1 (ENSMICG00000009166)	LETM2 (ENSMICG00000009157)	NSD3 (ENSMICG00000009144)	ENSMICG00000042115	DDHD2 (ENSMICG00000030736)	BAG4 (ENSMICG00000046026)	LSM1 (ENSMICG00000030726)	STAR (ENSMICG00000014671)	ASH2L (ENSMICG00000014641)	EIF4EBP1 (ENSMICG00000014636)	ADRB3 (ENSMICG00000027016)	ENSMICG00000047959 ##22	RAB11FIP1 (ENSMICG00000010174)	BRF2 (ENSMICG00000029960)	ADGRA2 (ENSMICG00000010161)	PLPBP (ENSMICG00000042505)	ERLIN2 (ENSMICG00000010152) ##10	ZNF703 (ENSMICG00000010151)	KCNU1 (ENSMICG00000031005)	UNC5D (ENSMICG00000003083)	DUSP26 (ENSMICG00000026693)	RNF122 (ENSMICG00000013127)	TTI2 (ENSMICG00000013113)	MAK16 (ENSMICG00000013106)	FUT10 (ENSMICG00000013099)	NRG1 (ENSMICG00000015565)	WRN (ENSMICG00000010630)
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.b ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES	108									ENSGT00390000013726.d #30	ENSGT00530000063711.b #29	ENSGT00940000157042.c.b #28	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173 #37	ENSGT00940000175336	ENSGT00940000162611.b	ENSGT00940000162611.a	ENSGT00940000154965.A	ENSGT00940000170319	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000157798.b
Clupeocephala	ANCESTRAL SPECIES	97											ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000175336	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000170319	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #16	ENSGT00390000002223 #17	ENSGT00940000157798.b	ENSGT00390000002554
Euteleosteomorpha	ANCESTRAL SPECIES	79	ENSGT00390000008221.a	ENSGT00940000167614	ENSGT00940000160104	ENSGT00510000049239.a.d	ENSGT00510000046773.a.b.c.b	ENSGT00390000016774	ENSGT01030000234599.a.b.d.b.b.a	ENSGT00530000063801.a.a	ENSGT00940000178559	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.b
Acanthomorphata	ANCESTRAL SPECIES	89	ENSGT00390000008221.a	ENSGT00940000167614	ENSGT00940000160104	ENSGT00510000049239.a.d	ENSGT00510000046773.a.b.c.b	ENSGT00390000016774	ENSGT01030000234599.a.b.d.b.b.a	ENSGT00530000063801.a.a	ENSGT00940000178559	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.b
Euacanthomorphacea	ANCESTRAL SPECIES	47	ENSGT00900000141021.b.b	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT00940000176087	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.b
Pinecone sodierfish	MODERN SPECIES		gtf3aa (ENSMMDG00005000618)	yju2b (ENSMMDG00005000612)	c3b.2 (ENSMMDG00005000596)	ENSMMDG00005000586	ENSMMDG00005000584	ENSMMDG00005000581	ENSMMDG00005000578	ENSMMDG00005000571	ENSMMDG00005000566	atpv0e2 (ENSMMDG00005000559)	ENSMMDG00005000554	ENSMMDG00005000550	ENTPD7 (ENSMMDG00005000226) #18	slc25a28 (ENSMMDG00005000099) #19	ENSMMDG00005000092 #20	GOT1 (ENSMMDG00005000079) ##22	CNNM1 (ENSMMDG00005000075) #23	hoga1 (ENSMMDG00005000074)	ENSMMDG00005000073	ENSMMDG00005000072	ENSMMDG00005000070	slit1b (ENSMMDG00005021592)	ARHGAP19 (ENSMMDG00005021496)	ENSMMDG00005021493	ENSMMDG00005021491	ENSMMDG00005021489	ENSMMDG00005021488	ENSMMDG00005021486	ENSMMDG00005021484	ENSMMDG00005021483	ENSMMDG00005021482
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00900000141021.b.b	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT00940000176087	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.b
Tiger tail seahorse	MODERN SPECIES	518	ENSHCOG00000008470	ENSHCOG00000008485	ufl1 (ENSHCOG00000008493)	ENSHCOG00000008556	ENSHCOG00000008567	AXIN1 (ENSHCOG00000008602)	thumpd1 (ENSHCOG00000008618)	ENSHCOG00000008639	REXO5 (ENSHCOG00000008648)	parn (ENSHCOG00000008683)	atpv0e2 (ENSHCOG00000008699)	ENSHCOG00000008711	ENTPD7 (ENSHCOG00000008762) #18	slc25a28 (ENSHCOG00000008780) #19	NKX2-3 (ENSHCOG00000008804) #20	GOT1 (ENSHCOG00000008823) ##22	CNNM1 (ENSHCOG00000008889) #23	hoga1 (ENSHCOG00000008912)	MORN4 (ENSHCOG00000008931) #37	ENSHCOG00000008944	ENSHCOG00000008968	slit1b (ENSHCOG00000009025)	ARHGAP19 (ENSHCOG00000009054)	ENSHCOG00000009071	c3b.2 (ENSHCOG00000009152)	yju2b (ENSHCOG00000009176)	ENSHCOG00000009260	wdr83 (ENSHCOG00000009279)	wdr83os (ENSHCOG00000009291)	stx10 (ENSHCOG00000009302)	ier2b (ENSHCOG00000009318)
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.b	ENSGT00980000198884	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.b.b	ENSGT00990000203852	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406
Ovalentaria	ANCESTRAL SPECIES		ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639
Atherinomorphae	ANCESTRAL SPECIES	46										ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00940000153408.B.s.b	ENSGT00940000157824.i.a	ENSGT00550000074956	ENSGT00390000007529	ENSGT00940000166495	ENSGT00530000067736	ENSGT00940000177040	ENSGT00390000002789	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b.d	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406
Aplocheiloidei	ANCESTRAL SPECIES	81	ENSGT00940000158659	ENSGT00940000153408.B.s.b	ENSGT00940000157824.i.a	ENSGT00550000074956	ENSGT00390000007529	ENSGT00940000166495	ENSGT00940000179314	ENSGT00530000067736	ENSGT00390000002789	ENSGT00940000177040	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000180052	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639
Mangrove rivulus	MODERN SPECIES	271																GOT1 (ENSKMAG00000006315) ##22	CNNM1 (ENSKMAG00000006290) #23	hoga1 (ENSKMAG00000006254)	MORN4 (ENSKMAG00000006240) #37	ENSKMAG00000006202	slit1b (ENSKMAG00000006097)
Turquoise killifish	MODERN SPECIES	1617	ENSNFUG00015012876	MRPL45 (ENSNFUG00015012866)	npepps (ENSNFUG00015012030)	C11H6ORF120 (ENSNFUG00015011970)	mrpl21 (ENSNFUG00015011963)	ENSNFUG00015011456	ZGMRPL4 (ENSNFUG00015011372)	ccdc3b (ENSNFUG00015011363)	HYLS1 (ENSNFUG00015011348)	atpv0e2 (ENSNFUG00015011330)	CREBRF (ENSNFUG00015011320)	ENTPD7 (ENSNFUG00015011274) #18	ENSNFUG00015011257	SLC25A28 (ENSNFUG00015011246) #19	NKX2-3 (ENSNFUG00015011235) #20	GOT1 (ENSNFUG00015011190) ##22	CNNM1 (ENSNFUG00015011166) #23	hoga1 (ENSNFUG00015010952)	ENSNFUG00015010928	ENSNFUG00015010919	ENSNFUG00015010916	ENSNFUG00015010906	slit1b (ENSNFUG00015010091)	ENSNFUG00015009984	DLA (ENSNFUG00015009959)	ZBTB45 (ENSNFUG00015009939)	hk1 (ENSNFUG00015005439)	myom2a (ENSNFUG00015004624)	ENSNFUG00015004602	lgsn (ENSNFUG00015004590)	PTP4A1 (ENSNFUG00015004583)
Cyprinodontoidei	ANCESTRAL SPECIES	41	ENSGT00940000153408.B.s.b	ENSGT00940000157824.i.a	ENSGT00550000074956	ENSGT00390000007529	ENSGT00940000166495	ENSGT00530000067736	ENSGT00940000177040	ENSGT00390000002789	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b.d	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406
NAME_4	ANCESTRAL SPECIES	74	ENSGT00940000158659	ENSGT00940000153408.B.s.b	ENSGT00940000157824.i.a	ENSGT00550000074956	ENSGT00390000007529	ENSGT00940000166495	ENSGT00530000067736	ENSGT00940000177040	ENSGT00390000002789	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b.d	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00940000180052	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406
Mummichog	MODERN SPECIES	2270	commd1 (ENSFHEG00000002285)	USP34 (ENSFHEG00000002359)	XPO1 (ENSFHEG00000002412)	FAM161A (ENSFHEG00000002424)	cct4 (ENSFHEG00000002454)	pus10 (ENSFHEG00000002475)	ENSFHEG00000002501	ifngr1 (ENSFHEG00000002503)	ENSFHEG00000002510	ltv1 (ENSFHEG00000002538)	atpv0e2 (ENSFHEG00000002546)	ENSFHEG00000002561	ENTPD7 (ENSFHEG00000002586) #18	slc25a28 (ENSFHEG00000002603) #19	ENSFHEG00000002607 #20	GOT1 (ENSFHEG00000002621) ##22	CNNM1 (ENSFHEG00000002668) #23	hoga1 (ENSFHEG00000002680)	ENSFHEG00000002684	ENSFHEG00000002691	ENSFHEG00000002734	slit1b (ENSFHEG00000002796)	ARHGAP19 (ENSFHEG00000002810)	ENSFHEG00000002822	dla (ENSFHEG00000002839)	ENSFHEG00000002870	hk1 (ENSFHEG00000002913)	myom2a (ENSFHEG00000003011)	ENSFHEG00000003030	lgsn (ENSFHEG00000003054)	ptp4a1 (ENSFHEG00000003076)
Sheepshead minnow	MODERN SPECIES	157	ENSCVAG00000000101	ENSCVAG00000003169	ENSCVAG00000003149	ENSCVAG00000003099	XCR1 (ENSCVAG00000003080)	ENSCVAG00000003076	ENSCVAG00000003059	ENSCVAG00000000742	ENSCVAG00000003039	ENSCVAG00000003029	atpv0e2 (ENSCVAG00000003019)	ENSCVAG00000003007	ENTPD7 (ENSCVAG00000002999) #18	slc25a28 (ENSCVAG00000002979) #19	ENSCVAG00000002952 #20	GOT1 (ENSCVAG00000002950) ##22	CNNM1 (ENSCVAG00000002925) #23	hoga1 (ENSCVAG00000002898)	ENSCVAG00000002887	ENSCVAG00000002883	ENSCVAG00000002875	slit1b (ENSCVAG00000002864)
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00940000153408.B.s.b	ENSGT00940000157824.i.a	ENSGT00550000074956	ENSGT00390000007529	ENSGT00940000166495	ENSGT00940000179314	ENSGT00530000067736	ENSGT00940000177040	ENSGT00390000002789	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406
Poecilia	ANCESTRAL SPECIES	6	ENSGT00940000153408.B.s.b	ENSGT00940000157824.i.a	ENSGT00550000074956	ENSGT00390000007529	ENSGT00940000166495	ENSGT00940000179314	ENSGT00530000067736	ENSGT00390000002789	ENSGT00940000177040	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406
NAME_6	ANCESTRAL SPECIES	278							ENSGT00530000067736	ENSGT00390000002789	ENSGT00940000177040	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b
Sailfin molly	MODERN SPECIES	304							ifngr1 (ENSPLAG00000022526)	ltv1 (ENSPLAG00000022522)	ENSPLAG00000000476	ENSPLAG00000022455	atpv0e2 (ENSPLAG00000022437)	ENSPLAG00000022424	ENTPD7 (ENSPLAG00000022413) #18	slc25a28 (ENSPLAG00000022373) #19	NKX2-3 (ENSPLAG00000022341) #20	GOT1 (ENSPLAG00000022323) ##22	CNNM1 (ENSPLAG00000022295) #23	hoga1 (ENSPLAG00000022226)	MORN4 (ENSPLAG00000022204) #37
Amazon molly	MODERN SPECIES	638								ENSPFOG00000024754	ifngr1 (ENSPFOG00000009105)	ltv1 (ENSPFOG00000009122)	ENSPFOG00000009234	ENSPFOG00000023708	ENTPD7 (ENSPFOG00000009283) #18	slc25a28 (ENSPFOG00000009401) #19	ENSPFOG00000009440 #20	GOT1 (ENSPFOG00000009462) ##22	CNNM1 (ENSPFOG00000009603) #23	hoga1 (ENSPFOG00000009760)	MORN4 (ENSPFOG00000009871) #37	ENSPFOG00000009902	slit1b (ENSPFOG00000010003)	ENSPFOG00000010443	RHOU (ENSPFOG00000010445)	dla (ENSPFOG00000010460)
Guppy	MODERN SPECIES	439	XPO1 (ENSPREG00000020796)	FAM161A (ENSPREG00000020846)	cct4 (ENSPREG00000020867)	pus10 (ENSPREG00000020908)	ENSPREG00000020952	ENSPREG00000020980	ifngr1 (ENSPREG00000020996)	ltv1 (ENSPREG00000021028)	ENSPREG00000021067	ENSPREG00000021081	atpv0e2 (ENSPREG00000021108)	ENSPREG00000021136	ENTPD7 (ENSPREG00000021157) #18	slc25a28 (ENSPREG00000021174) #19	ENSPREG00000021187 #20	GOT1 (ENSPREG00000021211) ##22	CNNM1 (ENSPREG00000021245) #23	hoga1 (ENSPREG00000021261)	MORN4 (ENSPREG00000021271) #37	ENSPREG00000021280	ENSPREG00000021295	slit1b (ENSPREG00000021322)	ARHGAP19 (ENSPREG00000021370)	ENSPREG00000021405	dla (ENSPREG00000021420)	ENSPREG00000021438	hk1 (ENSPREG00000021465)	myom2a (ENSPREG00000021506)	ENSPREG00000021538	lgsn (ENSPREG00000021552)	ptp4a1 (ENSPREG00000021559)
Platyfish	MODERN SPECIES	19	XPO1 (ENSXMAG00000005790)	FAM161A (ENSXMAG00000005787)	cct4 (ENSXMAG00000005750)	pus10 (ENSXMAG00000005729)	ENSXMAG00000016020	ENSXMAG00000028107	ifngr1 (ENSXMAG00000005709)	ENSXMAG00000029535	ltv1 (ENSXMAG00000029822)	ENSXMAG00000005708	atpv0e2 (ENSXMAG00000027815)	ENSXMAG00000021763	ENTPD7 (ENSXMAG00000005683) #18	slc25a28 (ENSXMAG00000005681) #19	NKX2-3 (ENSXMAG00000022448) #20	GOT1 (ENSXMAG00000005669) ##22	CNNM1 (ENSXMAG00000005657) #23	hoga1 (ENSXMAG00000005650)	MORN4 (ENSXMAG00000005648) #37	ENSXMAG00000027531	slit1b (ENSXMAG00000014475)	ENSXMAG00000014472	ENSXMAG00000030012	dla (ENSXMAG00000014461)	ENSXMAG00000014452	hk1 (ENSXMAG00000008211)	myom2a (ENSXMAG00000014415)	ENSXMAG00000014414	lgsn (ENSXMAG00000014412)	ptp4a1 (ENSXMAG00000014405)	col9a1a (ENSXMAG00000014357)
Oryzias	ANCESTRAL SPECIES	34	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a	ENSGT01070000253760.b.a.a.a.b.a.a.a.b.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406
Oryzias_b	ANCESTRAL SPECIES	36	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b.u	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a	ENSGT01070000253760.b.a.a.a.b.a.a.a.b.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.a.a.a	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT01030000237709
Indian medaka	MODERN SPECIES	21	ENSOMEG00000012007	ENSOMEG00000011970	ENSOMEG00000011938	tmx2b (ENSOMEG00000011893)	zdhhc5a (ENSOMEG00000011842)	slc43a1b (ENSOMEG00000000831)	ENSOMEG00000011794	ENSOMEG00000011745	p2rx3b (ENSOMEG00000011735)	ENSOMEG00000011724	atpv0e2 (ENSOMEG00000011709)	ENSOMEG00000011680	ENTPD7 (ENSOMEG00000011604) #18	slc25a28 (ENSOMEG00000011564) #19	NKX2-3 (ENSOMEG00000011553) #20	GOT1 (ENSOMEG00000011541) ##22	CNNM1 (ENSOMEG00000011514) #23	hoga1 (ENSOMEG00000011497)	MORN4 (ENSOMEG00000011473) #37	ENSOMEG00000011452	ENSOMEG00000011408	ARHGAP19 (ENSOMEG00000011381)	ENSOMEG00000011304	dla (ENSOMEG00000011280)	ENSOMEG00000011246	hk1 (ENSOMEG00000011203)	myom2a (ENSOMEG00000000267)	ENSOMEG00000010956	lgsn (ENSOMEG00000010937)	ptp4a1 (ENSOMEG00000010915)	ENSOMEG00000010888
Javanese ricefish	MODERN SPECIES		ENSOJAG00000003437	ENSOJAG00000003385	TESK1 (ENSOJAG00000003257)	tmx2b (ENSOJAG00000003235)	slc43a1b (ENSOJAG00000003198)	ENSOJAG00000002651	pold4 (ENSOJAG00000002520)	p2rx3b (ENSOJAG00000002428)	ENSOJAG00000002411	atpv0e2 (ENSOJAG00000002403)	ENSOJAG00000002391	ENSOJAG00000002382	ENTPD7 (ENSOJAG00000002194) #18	slc25a28 (ENSOJAG00000002173) #19	NKX2-3 (ENSOJAG00000002162) #20	GOT1 (ENSOJAG00000002129) ##22	CNNM1 (ENSOJAG00000002100) #23	hoga1 (ENSOJAG00000002081)	ENSOJAG00000002057	ENSOJAG00000002037	ARHGAP19 (ENSOJAG00000001434)	ENSOJAG00000001428	dla (ENSOJAG00000001417)	ENSOJAG00000001408	ENSOJAG00000001402	hk1 (ENSOJAG00000000858)	ENSOJAG00000000571	lgsn (ENSOJAG00000000560)	ptp4a1 (ENSOJAG00000000548)	ENSOJAG00000000536	EOLA1 (ENSOJAG00000000510)
Oryzias_a	ANCESTRAL SPECIES	59	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a	ENSGT01070000253760.b.a.a.a.b.a.a.a.b.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406
Chinese medaka	MODERN SPECIES	1299															NKX2-3 (ENSOSIG00000023633) #20	GOT1 (ENSOSIG00000023631) ##22
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000023088	ENSORLG00000028506	ENSORLG00000000870	ENSORLG00000028817	ENSORLG00000022956	ENSORLG00000025490	ENSORLG00000028345	ENSORLG00000023024	ENSORLG00000000170	ENSORLG00000026321	atpv0e2 (ENSORLG00000021962)	ENSORLG00000027950	ENTPD7 (ENSORLG00000000027) #18	SLC25A28 (ENSORLG00000023276) #19	NKX2-3 (ENSORLG00000024332) #20	GOT1 (ENSORLG00000000031) ##22	CNNM1 (ENSORLG00000000036) #23	hoga1 (ENSORLG00000000039)	ENSORLG00000000043 #37	ENSORLG00000000044	ENSORLG00000027792	ENSORLG00000027690	ENSORLG00000000055	ARHGAP19 (ENSORLG00000000062)	ENSORLG00000000064	dla (ENSORLG00000027625)	ENSORLG00000026423	HK1 (ENSORLG00000000069)	myom2a (ENSORLG00000000075)	ENSORLG00000000078	lgsn (ENSORLG00000000080)
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639
Pomacentridae	ANCESTRAL SPECIES	67									ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406
Pomacentridae_A	ANCESTRAL SPECIES	151									ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a.c	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	790									ENSAPOG00000008424	ENSAPOG00000001034	atpv0e2 (ENSAPOG00000008459)	ENSAPOG00000008503	ENTPD7 (ENSAPOG00000008613) #18	slc25a28 (ENSAPOG00000008627) #19	NKX2-3 (ENSAPOG00000008652) #20	GOT1 (ENSAPOG00000008700) ##22	CNNM1 (ENSAPOG00000008709) #23
Spiny chromis	MODERN SPECIES	4153																ENSAPOG00000018261 ##22
Amphiprion	ANCESTRAL SPECIES										ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.a.b.b.a	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a.c	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.b.a.b	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639
Clown anemonefish	MODERN SPECIES	1931																GOT1 (ENSAOCG00000019381) ##22	CNNM1 (ENSAOCG00000001402) #23	hoga1 (ENSAOCG00000001398)	gldc (ENSAOCG00000002175)	MBOAT4 (ENSAOCG00000019156)	coq2 (ENSAOCG00000019116)	ENSAOCG00000019079	mfsd10 (ENSAOCG00000019068)	ENSAOCG00000019052	prlrb (ENSAOCG00000019008)	MALT1 (ENSAOCG00000018977)	emb (ENSAOCG00000018936)	mrps30 (ENSAOCG00000018917)	hint2 (ENSAOCG00000018892)	ENSAOCG00000018833	ENSAOCG00000018805
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000008978	ENSAPEG00000009117	ENSAPEG00000009288	ENSAPEG00000009324	ENSAPEG00000009448	ENSAPEG00000009594	ENSAPEG00000009706	ENSAPEG00000009727	ENSAPEG00000009860	ENSAPEG00000009897	atpv0e2 (ENSAPEG00000009922)	ENSAPEG00000009939	ENTPD7 (ENSAPEG00000009967) #18	slc25a28 (ENSAPEG00000010021) #19	NKX2-3 (ENSAPEG00000010041) #20	GOT1 (ENSAPEG00000010068) ##22	CNNM1 (ENSAPEG00000010118) #23	hoga1 (ENSAPEG00000010201)	MORN4 (ENSAPEG00000010232) #37	ENSAPEG00000010248	ENSAPEG00000010271	slit1b (ENSAPEG00000010303)	ARHGAP19 (ENSAPEG00000010451)	ENSAPEG00000010539	RHOU (ENSAPEG00000010570)	dla (ENSAPEG00000010614)	ENSAPEG00000010678	hk1 (ENSAPEG00000010727)	myom2a (ENSAPEG00000010774)	ENSAPEG00000010819	lgsn (ENSAPEG00000010837)
Bicolor damselfish	MODERN SPECIES	2239													ENTPD7 (ENSSPAG00000020024) #18	slc25a28 (ENSSPAG00000020016) #19	NKX2-3 (ENSSPAG00000020008) #20	GOT1 (ENSSPAG00000019993) ##22
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00980000198884	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a.a.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b.c	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00980000198884	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a.a.a.a.a.a	ENSGT00990000203852.a.a.b	ENSGT00990000203852.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	33	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b.c	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639
Haplochromini	ANCESTRAL SPECIES	45	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b.c	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e.c	ENSGT00940000157889.g.b	ENSGT00390000013639
Burton s mouthbrooder	MODERN SPECIES	546					ENSHBUG00000016894	ENSHBUG00000016855	ENSHBUG00000016827	ENSHBUG00000016759	ENSHBUG00000016738	ENSHBUG00000016720	atpv0e2 (ENSHBUG00000016705)	ENSHBUG00000016686	ENTPD7 (ENSHBUG00000001004) #18	slc25a28 (ENSHBUG00000016611) #19	ENSHBUG00000016604 #20	GOT1 (ENSHBUG00000016598) ##22	CNNM1 (ENSHBUG00000001140) #23	hoga1 (ENSHBUG00000016549)	ENSHBUG00000016469	MORN4 (ENSHBUG00000016465) #37	ENSHBUG00000016442	slit1b (ENSHBUG00000016427)	ARHGAP19 (ENSHBUG00000016400)	ENSHBUG00000016386	dla (ENSHBUG00000016370)	ENSHBUG00000016325	hk1 (ENSHBUG00000016275)	myom2a (ENSHBUG00000016197)	lgsn (ENSHBUG00000016181)	ptp4a1 (ENSHBUG00000016172)	col9a1a (ENSHBUG00000016144)
Haplochromini_A	ANCESTRAL SPECIES	50	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b.c	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000170319	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e.c	ENSGT00940000157889.g.b	ENSGT00390000013639
Haplochromini_B	ANCESTRAL SPECIES	93		ENSGT00390000013764.ab.a.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.a.b.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.b.c	ENSGT00980000198884.e.a	ENSGT01030000234576.D.a.b.a.a.a.b.c.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e.c	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005014843	ENSMZEG00005014834	ENSMZEG00005014819	ENSMZEG00005014815	ENSMZEG00005014782	ENSMZEG00005014776	ENSMZEG00005014770	ENSMZEG00005014762	ENSMZEG00005014750	ENSMZEG00005014740	atpv0e2 (ENSMZEG00005014731)	ENSMZEG00005014712	ENTPD7 (ENSMZEG00005014689) #18	slc25a28 (ENSMZEG00005014676) #19	ENSMZEG00005014660 #20	GOT1 (ENSMZEG00005014631) ##22	CNNM1 (ENSMZEG00005014619) #23	ENSMZEG00005014604	hoga1 (ENSMZEG00005014595)	MORN4 (ENSMZEG00005014565) #37	ENSMZEG00005014560	slit1b (ENSMZEG00005014549)	ENSMZEG00005014534	man2b1 (ENSMZEG00005014523)	TRMT1 (ENSMZEG00005014510)	NACC1 (ENSMZEG00005014477)	stx10 (ENSMZEG00005014469)	ier2b (ENSMZEG00005014461)	cacna1ab (ENSMZEG00005014424)	wdr83os (ENSMZEG00005014409)	wdr83 (ENSMZEG00005014388)
Eastern happy	MODERN SPECIES	18	ENSACLG00000012526	ENSACLG00000012490	ENSACLG00000012482	ENSACLG00000012475	ENSACLG00000012471	ENSACLG00000012449	ENSACLG00000012421	ENSACLG00000012414	ENSACLG00000012384	ENSACLG00000012346	atpv0e2 (ENSACLG00000012310)	ENSACLG00000012247	ENTPD7 (ENSACLG00000012169) #18	slc25a28 (ENSACLG00000012120) #19	ENSACLG00000012108 #20	GOT1 (ENSACLG00000012047) ##22	CNNM1 (ENSACLG00000012030) #23	ENSACLG00000012019	hoga1 (ENSACLG00000011903)	MORN4 (ENSACLG00000011891) #37	ENSACLG00000011857	slit1b (ENSACLG00000011523)	ARHGAP19 (ENSACLG00000011516)	ENSACLG00000011506	dla (ENSACLG00000011496)	ENSACLG00000011491	hk1 (ENSACLG00000011311)	myom2a (ENSACLG00000011219)	ENSACLG00000011207	lgsn (ENSACLG00000011199)	ptp4a1 (ENSACLG00000011171)
P. nyererei	MODERN SPECIES	545						ENSPNYG00000023286	ENSPNYG00000023292	ENSPNYG00000023297	ENSPNYG00000023300	ENSPNYG00000023304	atpv0e2 (ENSPNYG00000023307)	ENSPNYG00000023311	ENTPD7 (ENSPNYG00000023316) #18	slc25a28 (ENSPNYG00000023323) #19	ENSPNYG00000023327 #20	GOT1 (ENSPNYG00000000824) ##22	CNNM1 (ENSPNYG00000000875) #23	hoga1 (ENSPNYG00000000964)	MORN4 (ENSPNYG00000000991) #37	ENSPNYG00000001023	ENSPNYG00000001040	ENSPNYG00000001049	ENSPNYG00000001078	ARHGAP19 (ENSPNYG00000001117)	ENSPNYG00000001159	dla (ENSPNYG00000001178)	ENSPNYG00000001220	hk1 (ENSPNYG00000001261)	myom2a (ENSPNYG00000001345)	lgsn (ENSPNYG00000001618)	ptp4a1 (ENSPNYG00000001652)
Lyretail cichlid	MODERN SPECIES	443									ENSNBRG00000006833	ENSNBRG00000006809	atpv0e2 (ENSNBRG00000006796)	ENSNBRG00000006788	ENTPD7 (ENSNBRG00000006756) #18	slc25a28 (ENSNBRG00000006726) #19	NKX2-3 (ENSNBRG00000006711) #20	GOT1 (ENSNBRG00000006678) ##22	CNNM1 (ENSNBRG00000006620) #23	hoga1 (ENSNBRG00000006578)	ENSNBRG00000006555	ENSNBRG00000006539	slit1b (ENSNBRG00000005548)	ARHGAP19 (ENSNBRG00000005483)	RHOU (ENSNBRG00000005470)	dla (ENSNBRG00000005342)	ENSNBRG00000005305	hk1 (ENSNBRG00000005272)	myom2a (ENSNBRG00000004940)	ENSNBRG00000004865	lgsn (ENSNBRG00000004858)	ptp4a1 (ENSNBRG00000004831)	ENSNBRG00000004814
Nile tilapia	MODERN SPECIES	18	ENSONIG00000030067	ENSONIG00000031539	ENSONIG00000034419	ENSONIG00000029800	ENSONIG00000035635	ENSONIG00000035631	ENSONIG00000033100	ENSONIG00000040357	ENSONIG00000000299	ENSONIG00000000297	atpv0e2 (ENSONIG00000038259)	ENSONIG00000000294	ENTPD7 (ENSONIG00000000286) #18	slc25a28 (ENSONIG00000000285) #19	ENSONIG00000033805 #20	GOT1 (ENSONIG00000000268) ##22	CNNM1 (ENSONIG00000000264) #23	ENSONIG00000040013	hoga1 (ENSONIG00000000262)	MORN4 (ENSONIG00000000257) #37	ENSONIG00000037769	ENSONIG00000000255	ENSONIG00000035807	slit1b (ENSONIG00000000202)	ARHGAP19 (ENSONIG00000032271)	ENSONIG00000000197	dla (ENSONIG00000000194)	ENSONIG00000031890	ENSONIG00000036388	hk1 (ENSONIG00000000186)	myom2a (ENSONIG00000000159)
Midas cichlid	MODERN SPECIES	119												atpv0e2 (ENSACIG00000020077)	ENTPD7 (ENSACIG00000020089) #18	slc25a28 (ENSACIG00000020125) #19	ENSACIG00000020288 #20	GOT1 (ENSACIG00000020304) ##22	CNNM1 (ENSACIG00000020322) #23	hoga1 (ENSACIG00000020356)	ENSACIG00000020373	ENSACIG00000020394	ENSACIG00000020408	slit1b (ENSACIG00000020470)
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.b.l	ENSGT00980000198884	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.a.a	ENSGT00990000203852	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT00980000198884	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.a.a	ENSGT00990000203852	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT00980000198884	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.a.a	ENSGT00990000203852	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639
Ballan wrasse	MODERN SPECIES	465						ENSLBEG00000013793	ENSLBEG00000013720	crb3b (ENSLBEG00000013699)	c3b.2 (ENSLBEG00000013581)	ENSLBEG00000013518	atpv0e2 (ENSLBEG00000013498)	ENSLBEG00000013442	ENTPD7 (ENSLBEG00000013358) #18	slc25a28 (ENSLBEG00000013312) #19	NKX2-3 (ENSLBEG00000013270) #20	GOT1 (ENSLBEG00000013202) ##22	CNNM1 (ENSLBEG00000013164) #23	hoga1 (ENSLBEG00000013133)	MORN4 (ENSLBEG00000013102) #37
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT00980000198884	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.b.b.c.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.a.a.f	ENSGT00990000203852	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00940000177979	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.b.l	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b
Perciformes	ANCESTRAL SPECIES	2	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00940000177979	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT00980000198884	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b
Cottioidei	ANCESTRAL SPECIES	40	ENSGT00940000159327.u.b	ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00940000177979	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT00940000156644.e.a	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a	ENSGT00390000014512	ENSGT00940000164531
Lumpfish	MODERN SPECIES		yju2b (ENSCLMG00005010376)	ENSCLMG00005010375	c3b.2 (ENSCLMG00005010374)	ENSCLMG00005010373	ENSCLMG00005010372	ENSCLMG00005010371	ENSCLMG00005010370	ENSCLMG00005010367	ENSCLMG00005010363	ENSCLMG00005010360	atpv0e2 (ENSCLMG00005010358)	ENTPD7 (ENSCLMG00005009896) #18	SLC25A28 (ENSCLMG00005009893) #19	NKX2-3 (ENSCLMG00005009891) #20	ENSCLMG00005009890	GOT1 (ENSCLMG00005009878) ##22	CNNM1 (ENSCLMG00005009877) #23	hoga1 (ENSCLMG00005009876)	ENSCLMG00005009875	ENSCLMG00005009871	slit1b (ENSCLMG00005007864)	ARHGAP19 (ENSCLMG00005007827)	ENSCLMG00005007826	ENSCLMG00005007822	ENSCLMG00005003322	myom2a (ENSCLMG00005002326)	ENSCLMG00005002321	lgsn (ENSCLMG00005002320)	ENSCLMG00005002319	ENSCLMG00005002317	ENSCLMG00005002316
Stickleback	MODERN SPECIES	360																GOT1 (ENSGACG00000000254) ##22	CNNM1 (ENSGACG00000000245) #23
Perciformes_a	ANCESTRAL SPECIES		ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT00980000198884	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.b.b.d	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406
Pike perch	MODERN SPECIES	151						ENSSLUG00000018665	ENSSLUG00000018656	ENSSLUG00000018636	ENSSLUG00000018630	ENSSLUG00000018624	atpv0e2 (ENSSLUG00000018619)	ENSSLUG00000018615	ENTPD7 (ENSSLUG00000018103) #18	slc25a28 (ENSSLUG00000018068) #19	ENSSLUG00000018067 #20	GOT1 (ENSSLUG00000018061) ##22	CNNM1 (ENSSLUG00000018055) #23	hoga1 (ENSSLUG00000018050)	ENSSLUG00000018044	ENSSLUG00000018040	ENSSLUG00000018035	slit1b (ENSSLUG00000017676)	ARHGAP19 (ENSSLUG00000017387)	ENSSLUG00000017371	ENSSLUG00000017362	ENSSLUG00000017356	ENSSLUG00000017349	dla (ENSSLUG00000017336)	ENSSLUG00000017331	hk1 (ENSSLUG00000017014)	myom2a (ENSSLUG00000014845)
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.b	ENSGT00990000203852	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.b.l	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.a	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a
European seabass	MODERN SPECIES	20	ENSDLAG00005028918	ENSDLAG00005029267	ENSDLAG00005006861	ugp2a (ENSDLAG00005006357)	VPS54 (ENSDLAG00005006511)	ENSDLAG00005006165	otx2a (ENSDLAG00005006154)	ENSDLAG00005034687	ENSDLAG00005030008	ENSDLAG00005011667	b3gnt2a (ENSDLAG00005032538)	commd1 (ENSDLAG00005033691)	ENSDLAG00005005654	ENSDLAG00005005184	ENSDLAG00005004960	ENSDLAG00005004902 ##22	ENSDLAG00005004880 #23	hoga1 (ENSDLAG00005004866)	ENSDLAG00005031665 #37	ENSDLAG00005032028	slit1b (ENSDLAG00005001600)	ENSDLAG00005001355	ENSDLAG00005017832	ENSDLAG00005020174	ENSDLAG00005017662	ENSDLAG00005022238	ENSDLAG00005022146	ENSDLAG00005022130	myom2a (ENSDLAG00005020729)	ENSDLAG00005020677	lgsn (ENSDLAG00005020670)
Large yellow croaker	MODERN SPECIES	481	yju2b (ENSLCRG00005023112)	c3b.2 (ENSLCRG00005023115)	ENSLCRG00005023117	ENSLCRG00005023121	ENSLCRG00005023123	ENSLCRG00005023127	ENSLCRG00005023129	ENSLCRG00005023133	ENSLCRG00005023134	ENSLCRG00005023137	atpv0e2 (ENSLCRG00005023138)	ENSLCRG00005023140	ENTPD7 (ENSLCRG00005023168) #18	slc25a28 (ENSLCRG00005023325) #19	ENSLCRG00005023326 #20	GOT1 (ENSLCRG00005023329) ##22	CNNM1 (ENSLCRG00005023342) #23	hoga1 (ENSLCRG00005023344)	MORN4 (ENSLCRG00005023346) #37	ENSLCRG00005023347	slit1b (ENSLCRG00005002787)	ARHGAP19 (ENSLCRG00005010166)	ENSLCRG00005010172	RHOU (ENSLCRG00005010174)	dla (ENSLCRG00005010176)	ENSLCRG00005010180	myom2a (ENSLCRG00005010193)	hk1 (ENSLCRG00005010263)	ENSLCRG00005014303	ENSLCRG00005014304	lgsn (ENSLCRG00005014305)
Gilthead seabream	MODERN SPECIES		ENSSAUG00010000045	ENSSAUG00010000044	ENSSAUG00010000042	ENSSAUG00010000040	ENSSAUG00010000038	ENSSAUG00010017926	ENSSAUG00010017923	ENSSAUG00010017920	ENSSAUG00010017917	ENSSAUG00010017914	ENSSAUG00010017906	atpv0e2 (ENSSAUG00010017902)	ENSSAUG00010017898	ENTPD7 (ENSSAUG00010017741) #18	NKX2-3 (ENSSAUG00010017737) #20	GOT1 (ENSSAUG00010017731) ##22	CNNM1 (ENSSAUG00010017726) #23	hoga1 (ENSSAUG00010017723)	ENSSAUG00010017720	ENSSAUG00010017717	MORN4 (ENSSAUG00010017715) #37	slit1b (ENSSAUG00010013502)	ARHGAP19 (ENSSAUG00010013459)	nipal4 (ENSSAUG00010013441)	ENSSAUG00010013438	ENSSAUG00010013436	ENSSAUG00010013435	ENSSAUG00010013433	ENSSAUG00010013428	ENSSAUG00010013426	ENSSAUG00010013424
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.a.a	ENSGT00990000203852	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.b.b	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.a.a.b.l	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639
Anabantoidei	ANCESTRAL SPECIES		ENSGT00940000166436	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT00940000157935.a
Climbing perch	MODERN SPECIES		ENSATEG00000000348	ENSATEG00000000209	ENSATEG00000000771	ENSATEG00000025955	ENSATEG00000000188	ENSATEG00000000027	ENSATEG00000000496	ENSATEG00000001122	ENSATEG00000022174	ENSATEG00000022160	atpv0e2 (ENSATEG00000022155)	ENSATEG00000022142	ENTPD7 (ENSATEG00000025313) #18	SLC25A28 (ENSATEG00000022106) #19	NKX2-3 (ENSATEG00000022096) #20	GOT1 (ENSATEG00000022085) ##22	CNNM1 (ENSATEG00000022052) #23	hoga1 (ENSATEG00000022037)	ENSATEG00000022028 #37	ENSATEG00000022021	slit1b (ENSATEG00000021971)	ENSATEG00000021938	ENSATEG00000021914	ENSATEG00000021898	ENSATEG00000021885	ENSATEG00000021862	ENSATEG00000021839	myom2a (ENSATEG00000021776)	ENSATEG00000021763	lgsn (ENSATEG00000021753)	ptp4a1 (ENSATEG00000021743)
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000008202	wdr83 (ENSBSLG00000008143)	ENSBSLG00000008135	ENSBSLG00000008132	yju2b (ENSBSLG00000008118)	c3b.2 (ENSBSLG00000007904)	ENSBSLG00000007848	ENSBSLG00000007863	ENSBSLG00000007772	ENSBSLG00000007733	atpv0e2 (ENSBSLG00000007148)	ENSBSLG00000007135	ENTPD7 (ENSBSLG00000007064) #18	slc25a28 (ENSBSLG00000007054) #19	NKX2-3 (ENSBSLG00000007044) #20	GOT1 (ENSBSLG00000006808) ##22	CNNM1 (ENSBSLG00000006707) #23	hoga1 (ENSBSLG00000006434)	MORN4 (ENSBSLG00000006339) #37	ENSBSLG00000006317	slit1b (ENSBSLG00000005052)	ENSBSLG00000004956	ENSBSLG00000007551	dla (ENSBSLG00000007537)	ENSBSLG00000007532	hk1 (ENSBSLG00000006755)	myom2a (ENSBSLG00000005201)	ENSBSLG00000005104	lgsn (ENSBSLG00000005047)	ptp4a1 (ENSBSLG00000004953)	ENSBSLG00000004910
Zig-zag eel	MODERN SPECIES		ENSMAMG00000026924	ENSMAMG00000002198	ENSMAMG00000024926	ENSMAMG00000002332	ENSMAMG00000002242	ENSMAMG00000002345	ENSMAMG00000002278	ENSMAMG00000003537	ENSMAMG00000002460	ENSMAMG00000025764	ENSMAMG00000002408	atpv0e2 (ENSMAMG00000027104)	ENSMAMG00000002778	ENSMAMG00000002678 #18	ENSMAMG00000002819 #20	ENSMAMG00000002834 ##22	ENSMAMG00000002885 #23	hoga1 (ENSMAMG00000002982)	ENSMAMG00000003013 #37	ENSMAMG00000003048	ENSMAMG00000003066	slit1b (ENSMAMG00000003079)	ENSMAMG00000003158	ENSMAMG00000003461	ENSMAMG00000026370	ENSMAMG00000003346	ENSMAMG00000026171	ENSMAMG00000003468	ENSMAMG00000003394	ENSMAMG00000003221	ENSMAMG00000025111
Carangaria	ANCESTRAL SPECIES		ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00990000203852	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00990000203852	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406
Seriola	ANCESTRAL SPECIES	154									ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c.a #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157331.b.a	ENSGT00940000157322.b.b	ENSGT00940000162611.a.a.a	ENSGT00940000162611.b	ENSGT00730000111173.h #37	ENSGT00530000063604.A	ENSGT00940000157525.a #23
Greater amberjack	MODERN SPECIES	156									ENSSDUG00000014045	ENSSDUG00000014026	atpv0e2 (ENSSDUG00000014014)	ENSSDUG00000014002	ENTPD7 (ENSSDUG00000013958) #18	slc25a28 (ENSSDUG00000013940) #19	ENSSDUG00000013901 #20	GOT1 (ENSSDUG00000013881) ##22	ARHGAP19 (ENSSDUG00000013857)	slit1b (ENSSDUG00000013813)	ENSSDUG00000013796	ENSSDUG00000013787	MORN4 (ENSSDUG00000013760) #37	hoga1 (ENSSDUG00000013736)	CNNM1 (ENSSDUG00000013708) #23	ENSSDUG00000013687	ENSSDUG00000013679	ENSSDUG00000013671	ptp4a1 (ENSSDUG00000013652)	lgsn (ENSSDUG00000013633)	ENSSDUG00000013627	myom2a (ENSSDUG00000013571)	hk1 (ENSSDUG00000013507)
Yellowtail amberjack	MODERN SPECIES	2775													ENTPD7 (ENSSLDG00000012644) #18	slc25a28 (ENSSLDG00000012721) #19	ENSSLDG00000012749 #20	GOT1 (ENSSLDG00000012764) ##22
Barramundi perch	MODERN SPECIES	167	gtf3aa (ENSLCAG00010017366)	yju2b (ENSLCAG00010017369)	c3b.2 (ENSLCAG00010017407)	ENSLCAG00010017505	ENSLCAG00010017524	ENSLCAG00010017537	ENSLCAG00010017543	ENSLCAG00010017553	ENSLCAG00010017571	ENSLCAG00010017594	atpv0e2 (ENSLCAG00010017603)	ENSLCAG00010017607	ENTPD7 (ENSLCAG00010017632) #18	slc25a28 (ENSLCAG00010017778) #19	NKX2-3 (ENSLCAG00010017780) #20	GOT1 (ENSLCAG00010017785) ##22	CNNM1 (ENSLCAG00010017811) #23	hoga1 (ENSLCAG00010017823)	MORN4 (ENSLCAG00010017826) #37	ENSLCAG00010017832	slit1b (ENSLCAG00010017878)	ARHGAP19 (ENSLCAG00010017975)	ENSLCAG00010017979	ENSLCAG00010017981	dla (ENSLCAG00010017982)	ENSLCAG00010017985	hk1 (ENSLCAG00010018183)	myom2a (ENSLCAG00010019470)	ENSLCAG00010019958	lgsn (ENSLCAG00010019964)	ptp4a1 (ENSLCAG00010019972)
Pleuronectoidei	ANCESTRAL SPECIES	26	ENSGT00900000141021.b.b.f	ENSGT00940000156518.A	ENSGT00390000002121	ENSGT00940000159016	ENSGT00950000182993.B.b	ENSGT00940000155647.bb	ENSGT00530000063615.b	ENSGT00940000154063.C.a.b	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.a	ENSGT00940000161036.B.b	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406
Tongue sole	MODERN SPECIES	19	ier2b (ENSCSEG00000020767)	cacna1ab (ENSCSEG00000020769)	wdr83os (ENSCSEG00000020788)	wdr83 (ENSCSEG00000020790)	ENSCSEG00000020795	GTF3A (ENSCSEG00000020796)	c3b.2 (ENSCSEG00000020797)	ENSCSEG00000020803	ENSCSEG00000020807	atpv0e2 (ENSCSEG00000020814)	ENSCSEG00000020816	ENTPD7 (ENSCSEG00000020819) #18	slc25a28 (ENSCSEG00000020821) #19	NKX2-3 (ENSCSEG00000020822) #20	ENSCSEG00000020823	GOT1 (ENSCSEG00000020824) ##22	ENSCSEG00000020826	CNNM1 (ENSCSEG00000020827) #23	hoga1 (ENSCSEG00000020828)	MORN4 (ENSCSEG00000020829) #37	ENSCSEG00000020830	ENSCSEG00000020831	ENSCSEG00000020832	ncf4 (ENSCSEG00000020833)	pvalb7 (ENSCSEG00000020834)	baiap2l2b (ENSCSEG00000020835)	ENSCSEG00000020836	dnal4b (ENSCSEG00000020837)	nptxrb (ENSCSEG00000020838)	pla2g6 (ENSCSEG00000020839)	cbx6a (ENSCSEG00000020840)
Turbot	MODERN SPECIES	20	wdr83 (ENSSMAG00000021130)	ENSSMAG00000025695	ENSSMAG00000021129	yju2b (ENSSMAG00000021128)	c3b.2 (ENSSMAG00000021126)	ENSSMAG00000035482	ENSSMAG00000033985	ENSSMAG00000021125	ENSSMAG00000021124	ENSSMAG00000021096	ENSSMAG00000037881	ENSSMAG00000021098	ENTPD7 (ENSSMAG00000021099) #18	SLC25A28 (ENSSMAG00000021100) #19	NKX2-3 (ENSSMAG00000021102) #20	GOT1 (ENSSMAG00000021101) ##22	CNNM1 (ENSSMAG00000021103) #23	hoga1 (ENSSMAG00000035315)	ENSSMAG00000032297	ENSSMAG00000035022	ENSSMAG00000021106	slit1b (ENSSMAG00000021107)	ENSSMAG00000021108	ENSSMAG00000030106	ENSSMAG00000021110	ENSSMAG00000021111	ENSSMAG00000021112	myom2a (ENSSMAG00000021113)	ENSSMAG00000021114	lgsn (ENSSMAG00000021115)	ptp4a1 (ENSSMAG00000021116)
Cod	MODERN SPECIES	16	ENSGMOG00000034303	SYNGR1 (ENSGMOG00000023049)	ENSGMOG00000034653	MGAT3 (ENSGMOG00000031946)	ENSGMOG00000018034	ENSGMOG00000029587	ENSGMOG00000018077	ENSGMOG00000026993	ENSGMOG00000018057	atf4a (ENSGMOG00000026369)	atpv0e2 (ENSGMOG00000024703)	ENSGMOG00000011963	ENTPD7 (ENSGMOG00000011954) #18	SLC25A28 (ENSGMOG00000028850) #19	NKX2-3 (ENSGMOG00000023385) #20	GOT1 (ENSGMOG00000011935) ##22	CNNM1 (ENSGMOG00000018366) #23	hoga1 (ENSGMOG00000024220)	ENSGMOG00000034450	ENSGMOG00000011889	ENSGMOG00000031324	ENSGMOG00000027132	slit1b (ENSGMOG00000024684)	ENSGMOG00000000581	ENSGMOG00000027990	ENSGMOG00000030643	tacr3l (ENSGMOG00000007290)	ENSGMOG00000007281	cldnd1b (ENSGMOG00000024776)	TBC1D9 (ENSGMOG00000003147)	ENSGMOG00000033809
Protacanthopterygii	ANCESTRAL SPECIES	59	ENSGT00950000182935.B.b.c.g	ENSGT00870000136549	ENSGT01050000244893.c.a.b.j	ENSGT00510000048276	ENSGT00390000008221.a	ENSGT00940000160104	ENSGT00510000049239.a.d	ENSGT00510000046773.a.b.c.b	ENSGT00390000016774	ENSGT01030000234599.a.b.d.b.b.a	ENSGT00530000063801.a.a	ENSGT00940000178559	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b ##22	ENSGT00940000157525.a #23	ENSGT00530000063604.A.d	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a
Northern pike	MODERN SPECIES	8	cyth4b (ENSELUG00000020237)	fam83fb (ENSELUG00000020195)	grap2b (ENSELUG00000020181)	ENSELUG00000028891	CACNA1I (ENSELUG00000020162)	ADAP1 (ENSELUG00000020107)	ENSELUG00000020053	lgals2b (ENSELUG00000020035)	GTPBP1 (ENSELUG00000019995)	ELFN2 (ENSELUG00000019794)	mfng (ENSELUG00000019752)	ENSELUG00000027644	ENSELUG00000019716	ENSELUG00000019705	ENSELUG00000019668	GOT1 (ENSELUG00000019698) ##22	CNNM1 (ENSELUG00000019656) #23	hoga1 (ENSELUG00000019626)	MORN4 (ENSELUG00000000862) #37	ENSELUG00000019575	slit1b (ENSELUG00000019549)	ARHGAP19 (ENSELUG00000019458)	ENSELUG00000000834	ENSELUG00000019395	ENSELUG00000026960	ENSELUG00000019362	ENSELUG00000026563	ENSELUG00000027249	ENSELUG00000029138	ENSELUG00000019312	ENSELUG00000024756
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1377																ENSGT00950000183082.b.b.a.b.c ##22	ENSGT00940000157525.a.c #23	ENSGT00530000063604.A.d.b
Salmoninae_a	ANCESTRAL SPECIES	581																ENSGT00950000183082.b.b.a.b.c ##22	ENSGT00940000157525.a.c #23
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	217																ENSGT00950000183082.b.b.a.b.c.a ##22	ENSGT00940000157525.a.d #23	ENSGT00530000063604.A.d.a	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a.b	ENSGT00940000157322.b.b.m	ENSGT00940000157322.b.b.n	ENSGT00940000157331.b.a.g.a	ENSGT01010000222294.c.b.b.b.c.a.a.a.b	ENSGT01010000222294.c.b.b.b.c.a.b.b.a.a.b.a	ENSGT00970000194718.b.b.a.a.a.a
River trout	MODERN SPECIES	31	ENSSTUG00000026651	ENSSTUG00000026634	ENSSTUG00000026619	ENSSTUG00000026604	ENSSTUG00000026596	ENSSTUG00000026592	ENSSTUG00000026518	ENSSTUG00000026500	ENSSTUG00000026473	atpv0e2 (ENSSTUG00000026458)	ENSSTUG00000026439	ENTPD7 (ENSSTUG00000025076) #18	slc25a28 (ENSSTUG00000025021) #19	NKX2-3 (ENSSTUG00000025013) #20	ENSSTUG00000025006	GOT1 (ENSSTUG00000024918) ##22	CNNM1 (ENSSTUG00000024844) #23	hoga1 (ENSSTUG00000024816)	MORN4 (ENSSTUG00000024798) #37	ENSSTUG00000024787	slit1b (ENSSTUG00000023377)	slit1b (ENSSTUG00000023316)	ARHGAP19 (ENSSTUG00000023301)	ENSSTUG00000023292	ENSSTUG00000023250	ENSSTUG00000023226	ENSSTUG00000023166	ENSSTUG00000023149	ENSSTUG00000023136	ENSSTUG00000023116	ENSSTUG00000023100
Atlantic salmon	MODERN SPECIES	28	pdcd10a (ENSSSAG00000068498)	ENSSSAG00000100476	ENSSSAG00000085561	ENSSSAG00000115384	ENSSSAG00000057876	ENSSSAG00000083043	ENSSSAG00000064152	ENSSSAG00000100135	ENSSSAG00000097274	ENSSSAG00000054738	ENSSSAG00000083628	ENSSSAG00000091296	ENSSSAG00000098092	ENSSSAG00000112578	ENSSSAG00000001886	ENSSSAG00000008959 ##22	ENSSSAG00000001468 #23	hoga1 (ENSSSAG00000110686)	slit1b (ENSSSAG00000092807)	ENSSSAG00000112556	ENSSSAG00000000233	ENSSSAG00000082949	P2RY6 (ENSSSAG00000094627)	ENSSSAG00000117227	ENSSSAG00000068440	relt (ENSSSAG00000056241)	ENSSSAG00000056253	ENSSSAG00000068429	ENSSSAG00000068432	ENSSSAG00000108106	PDE2A (ENSSSAG00000118822)
Salmo	ANCESTRAL SPECIES	244								ENSGT00940000157367.a.b.c	ENSGT01010000222294.c.b.b.b.c.a.b.b.a.a.a.b.b.a	ENSGT01010000222294.c.b.b.b.c.a.b.b.a.a.a.b.a	ENSGT00940000162476.d.a.b	ENSGT00390000007125.a.d.c	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d.c #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b.c.b ##22	ENSGT00940000157525.a.c #23
Atlantic salmon	MODERN SPECIES	3	ncf4 (ENSSSAG00000001947)	ENSSSAG00000092591	ENSSSAG00000001943	ENSSSAG00000106934	ENSSSAG00000086889	ENSSSAG00000098351	ENSSSAG00000121712	ENSSSAG00000091144	ENSSSAG00000001428	ENSSSAG00000008855	ENSSSAG00000008837	ENSSSAG00000001850	ENTPD7 (ENSSSAG00000001550) #18	SLC25A28 (ENSSSAG00000088969) #19	nkx23 (ENSSSAG00000008986) #20	GOT1 (ENSSSAG00000001473) ##22	CNNM1 (ENSSSAG00000106882) #23	ENSSSAG00000085811	ENSSSAG00000084650 #37	ENSSSAG00000001073	ENSSSAG00000087263	ENSSSAG00000101980	ENSSSAG00000101021	ENSSSAG00000112597	ENSSSAG00000118680	ENSSSAG00000113084	ENSSSAG00000103983	ENSSSAG00000095336	ENSSSAG00000001426	ARMH3 (ENSSSAG00000009412)	ENSSSAG00000109291
River trout	MODERN SPECIES	5	ENSSTUG00000036950	ENSSTUG00000037034	ENSSTUG00000037067	ENSSTUG00000037077	ENSSTUG00000037092	ENSSTUG00000037116	ENSSTUG00000037160	ENSSTUG00000037171	ENSSTUG00000037179	ENSSTUG00000037189	ATP6V0E2 (ENSSTUG00000037198)	ENSSTUG00000037216	ENTPD7 (ENSSTUG00000037239) #18	slc25a28 (ENSSTUG00000037398) #19	NKX2-3 (ENSSTUG00000037406) #20	GOT1 (ENSSTUG00000037417) ##22	ENSSTUG00000037495	ENSSTUG00000037506 #37	ENSSTUG00000037509	ENSSTUG00000037522	ARHGAP19 (ENSSTUG00000037598)	ENSSTUG00000037618	KCNIP2 (ENSSTUG00000037663)	ldb1b (ENSSTUG00000037683)	ENSSTUG00000037824	ENSSTUG00000037834	ENSSTUG00000037845	si:dkey-93h22.8 (ENSSTUG00000037850)	ENSSTUG00000037856	cant1b (ENSSTUG00000037894)	afmid (ENSSTUG00000037919)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	14	ENSGT00510000048276.j	ENSGT00390000008221.a	ENSGT00940000167614.e.a	ENSGT00900000142364	ENSGT00510000046773.a.b.c.b	ENSGT00390000016774.f	ENSGT01030000234599.a.b.d.b.b.a	ENSGT00530000063801.a.a	ENSGT00940000178559	ENSGT00940000161036.B.b.a	ENSGT00940000162476.d	ENSGT00390000007125.a.d	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d.c #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b.d.a.a ##22	ENSGT00940000157525.a.d #23	ENSGT00530000063604.A.d.a	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a.b	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT00970000194718.b.b.a.b.b	ENSGT00940000157798.b.e	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183127.c.b.d.a.a.a.f	ENSGT00940000161847.b.a.e.a.b.b	ENSGT00950000183127.c.b.d.a.a.a.e.a	ENSGT00950000183137.a.l
Salmoninae_a	ANCESTRAL SPECIES	33	ENSGT00510000048276.i	ENSGT00390000008221.a	ENSGT00940000167614.e.a	ENSGT00940000160104.u.b	ENSGT00510000049239.a.d.b	ENSGT00510000046773.a.b.c.b	ENSGT00390000016774.f	ENSGT01030000234599.a.b.d.b.b.a.a	ENSGT00530000063801.a.a	ENSGT00940000178559	ENSGT00940000162476.d.a.a	ENSGT00390000007125.a.d	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d.c #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b.d.a.a ##22	ENSGT00940000157525.a.d #23	ENSGT00530000063604.A.d.a	ENSGT00730000111173.h #37	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a.b	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.b.c.a.a.a.b	ENSGT00970000194718.b.b.a.b.b	ENSGT00940000157798.b.e	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00950000183127.c.b.d.a.a.a.f	ENSGT00940000161847.b.a.e.a.b.b	ENSGT00950000183127.c.b.d.a.a.a.e.a
Oncorhynchus	ANCESTRAL SPECIES	78	ENSGT00940000167614.e.a	ENSGT00940000160104.u.b	ENSGT00510000049239.a.d.a	ENSGT00510000049239.a.d.b	ENSGT00510000046773.a.b.c.b.c.b	ENSGT00390000016774.f	ENSGT01030000234599.a.b.d.b.b.a.a	ENSGT00530000063801.a.a	ENSGT00940000178559	ENSGT00940000161036.B.b.b.b.b	ENSGT00940000162476.d.a.a	ENSGT00390000007125.a.d	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d.c #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b.d.a.a ##22	ENSGT00940000157525.a.d #23	ENSGT00530000063604.A.d.a	ENSGT00730000111173.h #37	ENSGT00940000162611.a.a.a.a	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a.b	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.b.c.a.a.a.b	ENSGT00970000194718.b.b.a.b.b	ENSGT00940000157798.b.e	ENSGT00390000002554	ENSGT00390000005639.a.b.d.b	ENSGT00390000012872.b.e.a	ENSGT00390000011093.d.b.a
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000074609	ENSOMYG00000076182	ENSOMYG00000061457	ENSOMYG00000072675	ENSOMYG00000005207	ENSOMYG00000069513	ENSOMYG00000050715	ENSOMYG00000069678	ENSOMYG00000005358	ENSOMYG00000004973	ENSOMYG00000066880	ENTPD7 (ENSOMYG00000004811) #18	ENSOMYG00000053079	SLC25A28 (ENSOMYG00000004708) #19	NKX2-3 (ENSOMYG00000004459) #20	GOT1 (ENSOMYG00000077120) ##22	CNNM1 (ENSOMYG00000006207) #23	hoga1 (ENSOMYG00000006249)	ENSOMYG00000049220	ENSOMYG00000006456	ENSOMYG00000006387	slit1b (ENSOMYG00000006609)	ENSOMYG00000076614	ENSOMYG00000049087	ENSOMYG00000061918	ENSOMYG00000064780	ENSOMYG00000050183	ENSOMYG00000032612	ENSOMYG00000072319	ENSOMYG00000058375	ENSOMYG00000064079
Rainbow trout	MODERN SPECIES	8	ncf4 (ENSOMYG00000069276)	ENSOMYG00000050939	ENSOMYG00000071710	ENSOMYG00000005276	ENSOMYG00000050440	ENSOMYG00000069090	ENSOMYG00000052865	ENSOMYG00000055470	ENSOMYG00000064677	ENSOMYG00000056337	ENSOMYG00000065313	ENSOMYG00000075318	ENTPD7 (ENSOMYG00000004886) #18	SLC25A28 (ENSOMYG00000004834) #19	NKX2-3 (ENSOMYG00000036947) #20	GOT1 (ENSOMYG00000062775) ##22	CNNM1 (ENSOMYG00000059734) #23	hoga1 (ENSOMYG00000076754)	ENSOMYG00000071228 #37	ENSOMYG00000057804	ENSOMYG00000062698	slit1b (ENSOMYG00000056877)	ENSOMYG00000007516	ENSOMYG00000009498	ENSOMYG00000068527	ENSOMYG00000009538	ENSOMYG00000055249	ENSOMYG00000061892	ENSOMYG00000051447	ENSOMYG00000060200	ENSOMYG00000068272
Oncorhynchus_a	ANCESTRAL SPECIES	199												ENSGT00390000007125.a.d	ENSGT01100000263540.B.c #18	ENSGT00940000157049.d.c #19	ENSGT00940000157556.a.a #20	ENSGT00950000183082.b.b.a.b.d.a.a ##22	ENSGT00940000157525.a.d #23	ENSGT00530000063604.A.d.a	ENSGT00730000111173.h #37	ENSGT00940000162611.a.a.a.b	ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.b.c.a.a.a.b
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	30	sult3st4 (ENSOKIG00005047919)	ENSOKIG00005047910	ELFN2 (ENSOKIG00005047897)	GTPBP1 (ENSOKIG00005047855)	lgals2b (ENSOKIG00005047829)	ENSOKIG00005047820	ENSOKIG00005047817	ADAP1 (ENSOKIG00005047571)	CACNA1I (ENSOKIG00005047375)	atpv0e2 (ENSOKIG00005047354)	ENSOKIG00005047349	ENSOKIG00005047341	ENTPD7 (ENSOKIG00005046983) #18	SLC25A28 (ENSOKIG00005046952) #19	NKX2-3 (ENSOKIG00005046944) #20	GOT1 (ENSOKIG00005046930) ##22	CNNM1 (ENSOKIG00005046908) #23	hoga1 (ENSOKIG00005046891)	ENSOKIG00005046887	ENSOKIG00005046882 #37	ENSOKIG00005046877	ENSOKIG00005046873	slit1b (ENSOKIG00005038800)	ARHGAP19 (ENSOKIG00005038309)	ENSOKIG00005038256	ENSOKIG00005038221	ENSOKIG00005038212	ENSOKIG00005038140	ENSOKIG00005038091	ENSOKIG00005038025	KCNIP2 (ENSOKIG00005038004)
Coho salmon	MODERN SPECIES	362																GOT1 (ENSOKIG00005040228) ##22	ENSOKIG00005040022
Chinook salmon	MODERN SPECIES	25	ENSOTSG00005044939	ENSOTSG00005044941	zfyve27 (ENSOTSG00005044942) #33	golga7ba (ENSOTSG00005044944) #31	crtac1a (ENSOTSG00005044946) #30	ENSOTSG00005044954	ENSOTSG00005044955	vasna (ENSOTSG00005044956)	baiap2l2b (ENSOTSG00005044957)	pla2g6 (ENSOTSG00005044959)	cbx6a (ENSOTSG00005044971)	nptxrb (ENSOTSG00005044972)	ENSOTSG00005044973	ENSOTSG00005044975	ENSOTSG00005044977	GOT1 (ENSOTSG00005044978) ##22	CNNM1 (ENSOTSG00005044980) #23	hoga1 (ENSOTSG00005044985)	NKX2-3 (ENSOTSG00005044988) #20	slc25a28 (ENSOTSG00005044989) #19	ENSOTSG00005044991 #18	ENSOTSG00005044992	ENSOTSG00005044993	ENSOTSG00005045011	ap1m2 (ENSOTSG00005046503)	CDKN2D (ENSOTSG00005036322)	ENSOTSG00005036339	keap1b (ENSOTSG00005036359)	KCNJ4 (ENSOTSG00005036361)	SOX10 (ENSOTSG00005036362)	si:dkey-43k4.3 (ENSOTSG00005036363)
Huchen	MODERN SPECIES	8097																ENSHHUG00000000980 ##22	ENSHHUG00000000995 ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.b.d.a.b ##22
Huchen	DUPLICATION
Huchen	MODERN SPECIES	6472																GOT1 (ENSHHUG00000001250) ##22	ENSHHUG00000001242	GOT1 (ENSHHUG00000001231) ##22	ENSHHUG00000001212 #23	hoga1 (ENSHHUG00000001175)
Huchen	MODERN SPECIES	6472														GOT1 (ENSHHUG00000001250) ##22	ENSHHUG00000001242	GOT1 (ENSHHUG00000001231) ##22	ENSHHUG00000001212 #23	hoga1 (ENSHHUG00000001175)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000183082.b.b.a.b.d.b ##22
Huchen	MODERN SPECIES	11444																ENSHHUG00000015722 ##22
Elephant shark	MODERN SPECIES	1723										ENSCMIG00000015126	ENTPD7 (ENSCMIG00000015142) #18	slc25a28 (ENSCMIG00000015179) #19	ENSCMIG00000015182	ENSCMIG00000015185	nkx2.3 (ENSCMIG00000015187) #20	got1 (ENSCMIG00000015190) #22	ENSCMIG00000015216 #23	HPSE2 (ENSCMIG00000015220) #26	cnnm2a (ENSCMIG00000015232)