Perciformes	ANCESTRAL SPECIES	3	ENSGT00390000011918 #7	ENSGT00530000067342 #8	ENSGT00940000157775 #9	ENSGT00940000160908 #10	ENSGT00990000203786	ENSGT00940000165364.a.a #11	ENSGT00940000165134.a.b #12	ENSGT00940000177056.a	ENSGT00390000010549 #14	ENSGT00390000008714.b #15	ENSGT00940000160115.a.a #16	ENSGT00940000157292.fc.b #17	ENSGT00940000159960.d #18	ENSGT00940000162624 #20	ENSGT00520000055635.c.b.b #21	ENSGT00940000166708 #22	ENSGT00940000158852.e.a #23	ENSGT01030000234778	ENSGT01100000263479.H.c.b ##26	ENSGT01100000263479.H.c.a.a.f ##26	ENSGT01100000263479.H.c.a.a.e.a ##26	ENSGT01100000263479.H.c.a.b ##26	ENSGT01100000263479.G #26	ENSGT00950000183199.a.b #28	ENSGT00940000177028	ENSGT00940000163576 #29	ENSGT00940000161202 #30	ENSGT01050000244848.B.b	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.a.b.f	ENSGT01030000234583.a.a.c.a.a.h
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00390000011918 #7	ENSGT00530000067342 #8	ENSGT00940000157775 #9	ENSGT00940000160908 #10	ENSGT00990000203786	ENSGT00940000165364.a.a #11	ENSGT00940000165134.a.b #12	ENSGT00940000177056.a	ENSGT00390000010549 #14	ENSGT00390000008714.b #15	ENSGT00940000160115.a.a #16	ENSGT00940000157292.fc.b #17	ENSGT00940000159960.d #18	ENSGT00940000162624 #20	ENSGT00520000055635.c.b.b #21	ENSGT00940000166708 #22	ENSGT00940000158852.e.a #23	ENSGT01100000263479.H.c.b ##26	ENSGT01100000263479.H.c.a.a.f ##26	ENSGT01100000263479.H.c.a.b ##26	ENSGT01100000263479.G #26	ENSGT00950000183199.a.b #28	ENSGT00940000163576 #29	ENSGT00940000161202 #30	ENSGT01050000244848.B.b	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.a.b.f	ENSGT01030000234583.a.a.c.a.a.h	ENSGT00940000160262	ENSGT00940000162179.e.a.b	ENSGT00940000164807.G.a.a.b
Stickleback	MODERN SPECIES	19	ino80e (ENSGACG00000009624) #7	ENSGACG00000009618 #8	vars1 (ENSGACG00000009601) #9	abhd16a (ENSGACG00000009564) #10	ENSGACG00000009560 #11	ENSGACG00000009524 #12	ENSGACG00000009520 #13	rabac1 (ENSGACG00000009485) #14	dedd1 (ENSGACG00000009481) #15	ENSGACG00000009471 #16	ERF (ENSGACG00000009467) #17	ENSGACG00000009452 #18	ENSGACG00000009451 #19	ZNF526 (ENSGACG00000009449) #20	gsk3ab (ENSGACG00000009447) #21	znf574 (ENSGACG00000009439) #22	GRIK5 (ENSGACG00000009427) #23	ENSGACG00000009425 #24	ENSGACG00000009423 #25	ENSGACG00000009412 #26	ENSGACG00000009407 #27	pafah1b3 (ENSGACG00000009368) #28	tlr21 (ENSGACG00000009364) #29	cnfn (ENSGACG00000009361) #30	rundc3b (ENSGACG00000009330) #31	abcb4 (ENSGACG00000009299) #32	crot (ENSGACG00000009281) #33	crot (ENSGACG00000009260) #34	rpp38 (ENSGACG00000009258) #35	nmt2 (ENSGACG00000009238) #36	FAM171A1 (ENSGACG00000009230) #37
Lumpfish	MODERN SPECIES	7	ino80e (ENSCLMG00005006649) #7	ENSCLMG00005006652 #8	vars1 (ENSCLMG00005006666) #9	abhd16a (ENSCLMG00005007856) #10	ENSCLMG00005009232	ENSCLMG00005009233 #11	ENSCLMG00005009247 #12	ENSCLMG00005013870	rabac1 (ENSCLMG00005013871) #14	dedd1 (ENSCLMG00005013872) #15	POU2F2 (ENSCLMG00005013873) #16	ENSCLMG00005013881 #17	ENSCLMG00005013884 #18	ZNF526 (ENSCLMG00005013913) #20	gsk3ab (ENSCLMG00005013919) #21	znf574 (ENSCLMG00005014158) #22	GRIK5 (ENSCLMG00005014159) #23	ENSCLMG00005014160 ##26	ENSCLMG00005014161 ##26	ENSCLMG00005014164	ENSCLMG00005014167 ##26	ENSCLMG00005014169 ##26	ENSCLMG00005014171 #26	pafah1b3 (ENSCLMG00005014175) #28	tlr21 (ENSCLMG00005014176) #29	cnfn (ENSCLMG00005014177) #30	cxcr3.2 (ENSCLMG00005014178)	cxcr3.3 (ENSCLMG00005014180)	CXCR3 (ENSCLMG00005014181)	trim35-28 (ENSCLMG00005014182)	ENSCLMG00005014188
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00390000011918 #7	ENSGT00530000067342 #8	ENSGT00940000157775 #9	ENSGT00940000160908 #10	ENSGT00990000203786	ENSGT00940000165364.a.a #11	ENSGT00940000165134.a.b #12	ENSGT00940000177056.a	ENSGT00390000010549 #14	ENSGT00390000008714.b #15	ENSGT00940000160115.a.a #16	ENSGT00940000157292.fc.b #17	ENSGT00940000159960.d #18	ENSGT00940000162624 #20	ENSGT00520000055635.c.b.b #21	ENSGT00940000166708 #22	ENSGT00940000158852.e.a #23	ENSGT01030000234778	ENSGT01100000263479.H.c.b ##26	ENSGT01100000263479.H.c.a.a.f ##26	ENSGT01100000263479.H.c.a.a.e.a ##26	ENSGT01100000263479.H.c.a.b ##26	ENSGT01100000263479.G #26	ENSGT00950000183199.a.b #28	ENSGT00940000177028	ENSGT00940000163576 #29	ENSGT00940000161202 #30	ENSGT01050000244848.B.b	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.a.b.f	ENSGT01030000234583.a.a.c.a.a.h
Channel bull blenny	MODERN SPECIES	7	ino80e (ENSCGOG00000004917) #7	ENSCGOG00000004924 #8	vars1 (ENSCGOG00000004968) #9	abhd16a (ENSCGOG00000006827) #10	ENSCGOG00000006919	ENSCGOG00000006922 #11	ENSCGOG00000006937 #12	ENSCGOG00000007631	rabac1 (ENSCGOG00000007632) #14	dedd1 (ENSCGOG00000007634) #15	POU2F2 (ENSCGOG00000007638) #16	ENSCGOG00000007650 ##17	ENSCGOG00000007663 #18	ENSCGOG00000007734 #20	gsk3ab (ENSCGOG00000007758) #21	znf574 (ENSCGOG00000008739) #22	grik5 (ENSCGOG00000008765) #23	ENSCGOG00000009619	ENSCGOG00000009622	ENSCGOG00000009627 ##26	ENSCGOG00000009658 ##26	ENSCGOG00000009665 ##26	ENSCGOG00000009669 #26	pafah1b3 (ENSCGOG00000009682) #28	ENSCGOG00000009701	tlr21 (ENSCGOG00000009705) #29	cnfn (ENSCGOG00000009707) #30	cxcr3.2 (ENSCGOG00000009727)	cxcr3.3 (ENSCGOG00000009732)	CXCR3 (ENSCGOG00000009741)	trim35-28 (ENSCGOG00000009747)
Pike perch	MODERN SPECIES	15	ENSSLUG00000024106	ino80e (ENSSLUG00000024114) #7	ENSSLUG00000024121 #8	vars1 (ENSSLUG00000024188) #9	abhd16a (ENSSLUG00000024689) #10	ENSSLUG00000024732	ENSSLUG00000024738 #11	ENSSLUG00000024859 #12	rabac1 (ENSSLUG00000025342) #14	dedd1 (ENSSLUG00000025343) #15	POU2F2 (ENSSLUG00000025348) #16	ERF (ENSSLUG00000025350) #17	ENSSLUG00000025358 #18	ENSSLUG00000025374 #20	gsk3ab (ENSSLUG00000025383) #21	znf574 (ENSSLUG00000025393) #22	GRIK5 (ENSSLUG00000025400) #23	ENSSLUG00000025407	ENSSLUG00000025414 ##26	ENSSLUG00000025420 ##26