Otophysi	ANCESTRAL SPECIES	16	ENSGT00940000153456.a #8	ENSGT00390000011521 #9	ENSGT00390000003161 #10	ENSGT00390000004681.b #12	ENSGT00950000183044.a.b #13	ENSGT00950000183014.f.b.b.a.b.a #14	ENSGT00940000164218 #15	ENSGT00940000155265.b.b #16	ENSGT00940000155842.s #17	ENSGT00940000155842.t.x ##17	ENSGT00390000009122 #18	ENSGT00940000154843.F.c.b #19	ENSGT00940000157354.i #20	ENSGT00940000167364 #21	ENSGT00390000004746 #25	ENSGT00940000166222.h.b #22	ENSGT00940000155141.w.a #23	ENSGT00940000175851 #24	ENSGT00940000166128 #26	ENSGT00390000016034 #27	ENSGT00940000158349 #28	ENSGT00550000074943 #29	ENSGT01060000248564.b.a.a.b #30	ENSGT00950000182962.b.b #31	ENSGT00530000063583.b #32	ENSGT00940000160723	ENSGT00530000063408.A	ENSGT00940000156778.l	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904
Cyprinoidei	ANCESTRAL SPECIES	57	ENSGT00940000153837.a.a #7	ENSGT00940000153456.a #8	ENSGT00390000011521 #9	ENSGT00390000003161 #10	ENSGT00390000004681.b.e #11	ENSGT00390000004681.b.f.a #12	ENSGT00950000183044.a.b #13	ENSGT00950000183014.f.b.b.a.b.a #14	ENSGT00940000164218 #15	ENSGT00940000155265.b.b #16	ENSGT00940000155842.s #17	ENSGT00390000009122 #18	ENSGT00940000154843.F.c.b #19	ENSGT00940000157354.i #20	ENSGT00940000167364 #21	ENSGT00940000166222.h.b #22	ENSGT00940000155141.w.a #23	ENSGT00940000175851 #24	ENSGT00390000004746 #25	ENSGT00940000166128 #26	ENSGT00390000016034 #27	ENSGT00940000158349 #28	ENSGT00550000074943 #29	ENSGT01060000248564.b.a.a.b #30	ENSGT00950000182962.b.b #31	ENSGT00530000063583.b #32	ENSGT00590000083139.d.b.gb #33	ENSGT00940000158912.i #34	ENSGT00940000156528.d #35	ENSGT00940000167286.b.a.b #36	ENSGT00940000157766.b.b #37
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	206	ENSGT00950000183093.C.c	ENSGT00940000153837.a.a #7	ENSGT00940000153456.a.c #8	ENSGT00390000011521 #9	ENSGT00390000003161.f #10	ENSGT00390000004681.b.e #11	ENSGT00390000004681.b.f.a.b.a #12	ENSGT00390000004681.b.f.a.b.b #12	ENSGT00950000183044.a.b #13	ENSGT00950000183014.f.b.b.a.b.a.a.b #14	ENSGT00940000155842.s.g.a #17	ENSGT00390000009122 #18	ENSGT00940000154843.F.c.b.j #19	ENSGT00940000157354.i.f #20	ENSGT00940000167364.a.a #21	ENSGT00940000166222.h.b.a #22	ENSGT00940000155141.w.a.a #23
Goldfish	MODERN SPECIES	12	DUSP10 (ENSCARG00000039317)	RHPN1 (ENSCARG00000039040) #7	ENSCARG00000039020	C8orf82 (ENSCARG00000039003) #9	ARHGAP39 (ENSCARG00000038967) #10	gfus.1 (ENSCARG00000038297) #11	gfus.2 (ENSCARG00000038245) #12	gfus.2 (ENSCARG00000038129) #12	pycr3 (ENSCARG00000038108) #13	eef1db (ENSCARG00000038077) #14	ENSCARG00000038055 #17	tbc1d7 (ENSCARG00000038044) #18	DSP (ENSCARG00000037651) #19	SLC22A23 (ENSCARG00000037457) #20	ENSCARG00000037445 #21	ENSCARG00000037403 #22	ENSCARG00000037367 #23	fdft1 (ENSCARG00000036696) #27	gata4 (ENSCARG00000036645) #28	GPR6 (ENSCARG00000036611) #30	lin28b (ENSCARG00000036589)	RAB10 (ENSCARG00000036574)	ENSCARG00000036566	ENSCARG00000036554	bmp2b (ENSCARG00000036539)	ENSCARG00000058379	trmt6 (ENSCARG00000058163)	ENSCARG00000058140	ENSCARG00000058114	runx2b (ENSCARG00000058088)	clic5b (ENSCARG00000057984)
Cyprininae_a	ANCESTRAL SPECIES	142	ENSGT00950000183093.C.c	ENSGT00940000153837.a.a #7	ENSGT00940000153456.a.c #8	ENSGT00390000011521 #9	ENSGT00390000003161.f #10	ENSGT00390000004681.b.e #11	ENSGT00390000004681.b.f.a.b.a #12	ENSGT00390000004681.b.f.a.b.b #12	ENSGT00950000183044.a.b #13	ENSGT00950000183014.f.b.b.a.b.a.a.b #14	ENSGT00940000155842.s.g.a #17	ENSGT00390000009122 #18	ENSGT00940000154843.F.c.b.j #19	ENSGT00940000157354.i.f #20	ENSGT00940000167364.a.a #21	ENSGT00940000166222.h.b.a #22	ENSGT00940000155141.w.a.a #23	ENSGT00940000158349.n #28	ENSGT01060000248564.b.a.a.b.f #30	ENSGT00950000182962.b.b.t.a.a #31	ENSGT00530000063583.b.k #32	ENSGT00390000002881	ENSGT00590000083139.d.b.gb #33	ENSGT00940000158912.i.b #34	ENSGT00940000156528.d.b #35	ENSGT00940000157766.b.b.i #37	ENSGT00940000159694.b	ENSGT00940000154482.b.b.a.d.l	ENSGT01030000234620.a.a.a.a.a.a.a	ENSGT01020000230401.a.a.b.a.a	ENSGT01020000230401.a.a.b.a.b
Common carp reference	MODERN SPECIES	34	ENSCCRG00000005467	taf1a (ENSCCRG00000005524)	DUSP10 (ENSCCRG00000054337)	ENSCCRG00000015417 #7	naprt (ENSCCRG00000043181) #8	ENSCCRG00000055371 #9	ENSCCRG00000082065 #10	gfus.2 (ENSCCRG00000005640) #12	pycr3 (ENSCCRG00000073457) #13	eef1db (ENSCCRG00000063093) #14	ENSCCRG00000055925 #17	tbc1d7 (ENSCCRG00000057167) #18	ENSCCRG00000058558 #19	ENSCCRG00000054388 #20	ENSCCRG00000057564 #21	ENSCCRG00000047558 #22	ENSCCRG00000047583 #23	ENSCCRG00000072281 #27	GPR6 (ENSCCRG00000060730) #30	WASF1 (ENSCCRG00000079243) #31	ENSCCRG00000047170	cdc40 (ENSCCRG00000019697) #32	ENSCCRG00000080347 #33	METTL24 (ENSCCRG00000075264)	ENSCCRG00000076315 #34	pak6b (ENSCCRG00000026710) #35	slc25a29 (ENSCCRG00000011113) #37	slc25a47a (ENSCCRG00000035676)	DIO3 (ENSCCRG00000027389)	ppp2r5cb (ENSCCRG00000027540)	hsp90aa1.2 (ENSCCRG00000059456)
Golden-line barbel	MODERN SPECIES	1760														SLC22A23 (ENSSGRG00000027678) #20	ENSSGRG00000027686 #21	ENSSGRG00000027687 #22	ENSSGRG00000027689 #24	ENSSGRG00000027690 #24	fdft1 (ENSSGRG00000027692) #27
Cyprininae	ANCESTRAL SPECIES	553							ENSGT00390000004681.b.f.a.a #12	ENSGT00950000183014.f.b.b.a.b.a.a.a #14	ENSGT00940000164218 #15	ENSGT00940000155265.b.b #16	ENSGT00940000155842.s.g.b #17	ENSGT00940000154843.F.c.b.i #19	ENSGT00940000157354.i.e #20	ENSGT00940000167364.a.b #21	ENSGT00390000004746 #25	ENSGT00940000166222.h.b.b #22	ENSGT00940000155141.w.a.b #23	ENSGT00940000166128 #26	ENSGT00390000016034.`b.b #27	ENSGT00940000158349.m #28	ENSGT00550000074943 #29	ENSGT01060000248564.b.a.a.b.e #30	ENSGT00950000182962.b.b.t.b #31	ENSGT00530000063583.b.l #32	ENSGT00940000158912.i.a #34
Goldfish	MODERN SPECIES	56	ENSCARG00000054973	znf410 (ENSCARG00000054944)	ENSCARG00000054932	ENSCARG00000054923	ENSCARG00000054873	ARHGAP39 (ENSCARG00000054840) #10	ENSCARG00000054834	gfus.2 (ENSCARG00000054185) #12	eef1db (ENSCARG00000054102) #14	ENSCARG00000054089 #15	ENSCARG00000054072 #16	PHACTR1 (ENSCARG00000053926) #17	DSP (ENSCARG00000051171) #19	SLC22A23 (ENSCARG00000050883) #20	ENSCARG00000050863 #21	ENSCARG00000050837 #22	ENSCARG00000050833 #23	ctsbb (ENSCARG00000050796) #26	fdft1 (ENSCARG00000050571) #27	gata4 (ENSCARG00000050543) #28	FIG4 (ENSCARG00000047664) #29	GPR6 (ENSCARG00000047528) #30	WASF1 (ENSCARG00000047518) #31	cdc40 (ENSCARG00000047255) #32	ENSCARG00000047187 #34	PLCB1 (ENSCARG00000044070)	ENSCARG00000043778	PLCB4 (ENSCARG00000043226)	ENSCARG00000043141	ENSCARG00000043092	pak5 (ENSCARG00000042990)
Cyprininae_a	ANCESTRAL SPECIES	392							ENSGT00390000004681.b.f.a.a #12	ENSGT00950000183014.f.b.b.a.b.a.a.a #14	ENSGT00940000164218 #15	ENSGT00940000155265.b.b #16	ENSGT00940000155842.s.g.b #17	ENSGT00940000154843.F.c.b.i #19	ENSGT00940000157354.i.e #20	ENSGT00940000167364.a.b #21	ENSGT00390000004746 #25	ENSGT00940000166222.h.b.b #22	ENSGT00940000155141.w.a.b #23	ENSGT00940000175851 #24	ENSGT00390000016034.`b.a #27	ENSGT00940000166128 #26	ENSGT00390000016034.`b.b #27	ENSGT00940000158349.m #28	ENSGT00550000074943 #29	ENSGT01060000248564.b.a.a.b.e #30	ENSGT00950000182962.b.b.t.b #31	ENSGT00530000063583.b.l #32	ENSGT00940000158912.i.a #34	ENSGT00940000156528.d.a #35	ENSGT00940000167286.b.a.b #36	ENSGT00940000157766.b.b.j #37
Common carp reference	MODERN SPECIES	28	hlx1 (ENSCCRG00000005544)	naprt (ENSCCRG00000005559) #8	ENSCCRG00000005573 #9	ENSCCRG00000043175 #10	ENSCCRG00000068337	gfus.1 (ENSCCRG00000053117) #11	gfus.2 (ENSCCRG00000057308) #12	gfus.2 (ENSCCRG00000065131) #12	eef1db (ENSCCRG00000028541) #14	ENSCCRG00000028562 #15	ENSCCRG00000037019 #16	ENSCCRG00000014241 #17	ENSCCRG00000068396 #19	ENSCCRG00000058367 #20	ENSCCRG00000012332 #25	ENSCCRG00000047653 #22	ENSCCRG00000071352 #23	ctsbb (ENSCCRG00000047657) #26	ENSCCRG00000047664 #27	gata4 (ENSCCRG00000076261) #28	FIG4 (ENSCCRG00000032517) #29	GPR6 (ENSCCRG00000062256) #30	WASF1 (ENSCCRG00000069905) #31	cdc40 (ENSCCRG00000001583) #32	ENSCCRG00000064295 #34	ENSCCRG00000027356 #35	slc25a29 (ENSCCRG00000054460) #37	myh6 (ENSCCRG00000067645) #36	ENSCCRG00000070408	ENSCCRG00000080106	ppp2r5cb (ENSCCRG00000037761)
Golden-line barbel	MODERN SPECIES	586									eef1db (ENSSGRG00000005744) #14	ENSSGRG00000005743 #15	ENSSGRG00000005738 #17	ENSSGRG00000005736	DSP (ENSSGRG00000005734) #19	SLC22A23 (ENSSGRG00000005729) #20	ENSSGRG00000005723 #21	ENSSGRG00000005721 #22	ENSSGRG00000005718 #23	ENSSGRG00000005712 #24	ctsbb (ENSSGRG00000005710) #26	fdft1 (ENSSGRG00000005707) #27	gata4 (ENSSGRG00000005704) #28	FIG4 (ENSSGRG00000005693) #29	GPR6 (ENSSGRG00000005688) #30	WASF1 (ENSSGRG00000005683) #31	cdc40 (ENSSGRG00000005208) #32	ENSSGRG00000005200 #34	pak6b (ENSSGRG00000005197) #35	myh6 (ENSSGRG00000005194) #36	slc25a29 (ENSSGRG00000005192) #37	slc25a47a (ENSSGRG00000005188)	DIO3 (ENSSGRG00000005183)
Characiphysae	ANCESTRAL SPECIES	31	ENSGT00940000153456.a #8	ENSGT00390000011521 #9	ENSGT00390000003161 #10	ENSGT00390000004681.b.c #12	ENSGT00950000183044.a.b #13	ENSGT00950000183014.f.b.b.a.b.a #14	ENSGT00940000164218.ob.b #15	ENSGT00940000155265.b.b #16	ENSGT00940000155842.s #17	ENSGT00940000155842.t.x ##17	ENSGT00390000009122 #18	ENSGT00940000154843.F.c.b #19	ENSGT00940000157354.i #20	ENSGT00940000167364 #21	ENSGT00390000004746 #25	ENSGT00940000166222.h.b #22	ENSGT00940000155141.w.a #23	ENSGT00940000175851 #24	ENSGT00940000166128 #26	ENSGT00390000016034 #27	ENSGT00940000158349 #28	ENSGT00550000074943 #29	ENSGT01060000248564.b.a.a.b #30	ENSGT00950000182962.b.b #31	ENSGT00530000063583.b.n #32	ENSGT00940000160723	ENSGT00530000063408.A	ENSGT00940000156778.l	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904
Characiphysae_b	ANCESTRAL SPECIES	74	ENSGT00940000153456.a #8	ENSGT00390000011521 #9	ENSGT00390000003161 #10	ENSGT00390000004681.b.c #12	ENSGT00950000183044.a.b #13	ENSGT00950000183014.f.b.b.a.b.a #14	ENSGT00940000164218.ob.b #15	ENSGT00940000155265.b.b #16	ENSGT00940000155842.s #17	ENSGT00940000155842.t.x ##17	ENSGT00390000009122 #18	ENSGT00940000154843.F.c.b #19	ENSGT00940000157354.i #20	ENSGT00940000167364 #21	ENSGT00390000004746 #25	ENSGT00940000166222.h.b #22	ENSGT00940000155141.w.a #23	ENSGT00940000166128 #26	ENSGT00390000016034 #27	ENSGT00940000158349 #28	ENSGT00550000074943 #29	ENSGT01060000248564.b.a.a.b #30	ENSGT00950000182962.b.b #31	ENSGT00530000063583.b.n #32	ENSGT00390000002881	ENSGT00940000160723	ENSGT00530000063408.A	ENSGT00940000156778.l	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904
Characoidei	ANCESTRAL SPECIES	49	ENSGT00940000153456.a #8	ENSGT00390000011521 #9	ENSGT00390000003161 #10	ENSGT00390000004681.b.c #12	ENSGT00950000183044.a.b #13	ENSGT00950000183014.f.b.b.a.b.a #14	ENSGT00940000164218.ob.b #15	ENSGT00940000155265.b.b #16	ENSGT00940000155842.s #17	ENSGT00940000155842.t.x ##17	ENSGT00390000009122 #18	ENSGT00940000154843.F.c.b #19	ENSGT00940000157354.i #20	ENSGT00940000167364 #21	ENSGT00390000004746 #25	ENSGT00940000166222.h.b #22	ENSGT00940000155141.w.a #23	ENSGT00940000166128 #26	ENSGT00390000016034 #27	ENSGT00940000158349 #28	ENSGT00550000074943 #29	ENSGT01060000248564.b.a.a.b #30	ENSGT00950000182962.b.b #31	ENSGT00530000063583.b.n #32	ENSGT00390000002881	ENSGT00940000160723	ENSGT00530000063408.A	ENSGT00940000156778.l	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904
Red-bellied piranha	MODERN SPECIES	534	RHPN1 (ENSPNAG00000008008) #7	C8orf82 (ENSPNAG00000000576) #9	ARHGAP39 (ENSPNAG00000000574) #10	GFUS (ENSPNAG00000007972) #12	pycr3 (ENSPNAG00000000558) #13	eef1db (ENSPNAG00000007955) #14	ENSPNAG00000007927 #15	ENSPNAG00000007892 #16	ENSPNAG00000007886 #17	ENSPNAG00000007880 ##17	tbc1d7 (ENSPNAG00000007869) #18	DSP (ENSPNAG00000006717) #19	SLC22A23 (ENSPNAG00000007834) #20	ENSPNAG00000000496 #21	BPHL (ENSPNAG00000007819) #25	ENSPNAG00000007815 #22	ENSPNAG00000000478 #23	GPR6 (ENSPNAG00000000471) #30	WASF1 (ENSPNAG00000007800) #31
Mexicana tetra	MODERN SPECIES	95														ENSAMXG00000037700 #21	ENSAMXG00000039420	ENSAMXG00000012775 #22	NCOA7 (ENSAMXG00000012761) #23	ENSAMXG00000034152	ctsbb (ENSAMXG00000031360) #26	fdft1 (ENSAMXG00000033139) #27	gata4 (ENSAMXG00000035495) #28	FIG4 (ENSAMXG00000012658) #29	ENSAMXG00000043114	GPR6 (ENSAMXG00000026463) #30	ENSAMXG00000041939
Electric eel	MODERN SPECIES	4	C8orf82 (ENSEEEG00000020872) #9	ARHGAP39 (ENSEEEG00000020876) #10	GFUS (ENSEEEG00000020893) #12	ENSEEEG00000020924	pycr3 (ENSEEEG00000020927) #13	eef1db (ENSEEEG00000020928) #14	ENSEEEG00000020931	ENSEEEG00000020932	ENSEEEG00000020934 #17	ENSEEEG00000020935 ##17	tbc1d7 (ENSEEEG00000020937) #18	DSP (ENSEEEG00000020938) #19	SLC22A23 (ENSEEEG00000020940) #20	ENSEEEG00000020942 #21	BPHL (ENSEEEG00000020944) #25	ENSEEEG00000020945 #22	NCOA7 (ENSEEEG00000020948) #23	ctsbb (ENSEEEG00000020976) #26	fdft1 (ENSEEEG00000021012) #27	gata4 (ENSEEEG00000021014) #28	FIG4 (ENSEEEG00000021024) #29	GPR6 (ENSEEEG00000021028) #30	WASF1 (ENSEEEG00000021029) #31	WASF1 (ENSEEEG00000021030) #31
Channel catfish	MODERN SPECIES	11	cnr1a (ENSIPUG00000007860) ##30	rngtt (ENSIPUG00000007731)	pnrc1 (ENSIPUG00000007702)	PM20D2 (ENSIPUG00000007679)	c2h8orf82 (ENSIPUG00000007667) #9	arhgap39 (ENSIPUG00000007606) #10	TSTA3 (ENSIPUG00000007564) #12	pycrl (ENSIPUG00000007545) #13	eef1d (ENSIPUG00000007494) #14	ENSIPUG00000007460 #15	ENSIPUG00000007427 #17	tbc1d7 (ENSIPUG00000007381) #18	DSP (ENSIPUG00000007350) #19	slc22a23 (ENSIPUG00000007236) #20	psmg4 (ENSIPUG00000007288) #21	ENSIPUG00000007212 #22	ENSIPUG00000007194 #23	ENSIPUG00000007186 #24	fdft1 (ENSIPUG00000007144) #27	gata4 (ENSIPUG00000007121) #28	fig4 (ENSIPUG00000006925) #29	gpr6 (ENSIPUG00000006906) #30	wasf1 (ENSIPUG00000006830) #31	cdc40 (ENSIPUG00000006762) #32	mettl24 (ENSIPUG00000006740)	slc22a16 (ENSIPUG00000006700)	ust (ENSIPUG00000006670)	sash1 (ENSIPUG00000005390)	samd5 (ENSIPUG00000005355)	ENSIPUG00000005339	Trap1 (ENSIPUG00000005143)