Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000158860 #8	ENSGT00940000158161 #9	ENSGT00940000158411 #10	ENSGT00390000006247.tc #11	ENSGT00940000161331 #12	ENSGT00860000136224 #13	ENSGT00940000162710 #14	ENSGT00940000159534 #15	ENSGT00940000158688 #16	ENSGT01050000248434	ENSGT00940000160210 #17	ENSGT00940000163100.b #18	ENSGT00940000159669 #19	ENSGT00390000017353 #20	ENSGT01030000234578.B.b #21	ENSGT00950000183117.a.b #22	ENSGT00950000182931.A #23	ENSGT00940000154557.c.a.d.b #24	ENSGT00940000154557.c.a.d.a.a ##24	ENSGT00940000154557.c.a.c #25	ENSGT00940000154557.c.a.d.a.b #26	ENSGT00390000001017 #27	ENSGT00940000162223 #28	ENSGT00390000010711 #29	ENSGT00390000001958 #30	ENSGT00390000015005 #31	ENSGT00930000151073 #32	ENSGT01030000234555.a.a.b.a.b.a #33	ENSGT00940000160251 #34	ENSGT00530000063849.B #35	ENSGT00940000158400 #36
Ryukyu mouse	MODERN SPECIES	12	Slc6a17 (MGP_CAROLIEiJ_G0025503) #7	Kcnc4 (MGP_CAROLIEiJ_G0025502) #8	Rbm15 (MGP_CAROLIEiJ_G0025501) #9	Slc16a4 (MGP_CAROLIEiJ_G0025500) #10	MGP_CAROLIEiJ_G0025499 #11	Prok1 (MGP_CAROLIEiJ_G0025498) #12	MGP_CAROLIEiJ_G0025497 #13	Cym (MGP_CAROLIEiJ_G0025496) #14	Kcna10 (MGP_CAROLIEiJ_G0025495) #15	Kcna2 (MGP_CAROLIEiJ_G0025494) #16	Kcna3 (MGP_CAROLIEiJ_G0025493) #17	Or11i1 (MGP_CAROLIEiJ_G0025492) #18	Cd53 (MGP_CAROLIEiJ_G0025491) #19	Lrif1 (MGP_CAROLIEiJ_G0025490) #20	Dram2 (MGP_CAROLIEiJ_G0025489) #21	Cept1 (MGP_CAROLIEiJ_G0025488) #22	Dennd2d (MGP_CAROLIEiJ_G0025487) #23	Chil6 (MGP_CAROLIEiJ_G0025486) #24	Chia1 (MGP_CAROLIEiJ_G0025485) #25	Chil5 (MGP_CAROLIEiJ_G0025484) #26	Pifo (MGP_CAROLIEiJ_G0025483) #27	Ovgp1 (MGP_CAROLIEiJ_G0025482) #28	Wdr77 (MGP_CAROLIEiJ_G0025481) #29	Atp5pb (MGP_CAROLIEiJ_G0025480) #30	I830077J02Rik (MGP_CAROLIEiJ_G0025479) #31	Tmigd3 (MGP_CAROLIEiJ_G0025478) #32	Adora3 (MGP_CAROLIEiJ_G0025477) #33	Rap1a (MGP_CAROLIEiJ_G0025476) #34	Inka2 (MGP_CAROLIEiJ_G0025475) #35	Ddx20 (MGP_CAROLIEiJ_G0025474) #36	Kcnd3 (MGP_CAROLIEiJ_G0025473) #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000158860 #8	ENSGT00940000158161 #9	ENSGT00940000158411 #10	ENSGT00390000006247.tc #11	ENSGT00940000161331 #12	ENSGT00860000136224 #13	ENSGT00940000162710 #14	ENSGT00940000159534 #15	ENSGT00940000158688 #16	ENSGT01050000248434	ENSGT00940000160210 #17	ENSGT00940000163100.b #18	ENSGT00940000159669 #19	ENSGT00390000017353 #20	ENSGT01030000234578.B.b #21	ENSGT00950000183117.a.b #22	ENSGT00950000182931.A #23	ENSGT00940000154557.c.a.d.b #24	ENSGT00940000154557.c.a.d.a.a.d ##24	ENSGT00940000154557.c.a.d.a.a.c.a ##24	ENSGT00940000154557.c.a.c #25	ENSGT00940000154557.c.a.d.a.b #26	ENSGT00390000001017 #27	ENSGT00940000162223 #28	ENSGT00390000010711 #29	ENSGT00390000001958 #30	ENSGT00390000015005 #31	ENSGT00930000151073 #32	ENSGT01030000234555.a.a.b.a.b.a #33	ENSGT00940000160251 #34	ENSGT00530000063849.B #35
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000158860 #8	ENSGT00940000158161 #9	ENSGT00940000158411 #10	ENSGT00390000006247.tc #11	ENSGT00940000161331 #12	ENSGT00860000136224 #13	ENSGT00940000162710 #14	ENSGT00940000159534 #15	ENSGT00940000158688 #16	ENSGT01050000248434	ENSGT00940000160210 #17	ENSGT00940000163100.b #18	ENSGT00940000159669 #19	ENSGT00390000017353 #20	ENSGT01030000234578.B.b #21	ENSGT00950000183117.a.b #22	ENSGT00950000182931.A #23	ENSGT00940000154557.c.a.d.b #24	ENSGT00940000154557.c.a.c #25	ENSGT00940000154557.c.a.d.a.b #26	ENSGT00390000001017 #27	ENSGT00940000162223 #28	ENSGT00390000010711 #29	ENSGT00390000001958 #30	ENSGT00390000015005 #31	ENSGT00930000151073 #32	ENSGT01030000234555.a.a.b.a.b.a #33	ENSGT00940000160251 #34	ENSGT00530000063849.B #35	ENSGT00940000158400 #36	ENSGT00940000155343 #37
Steppe mouse	MODERN SPECIES	2124															Dram2 (ENSMSIG00000011039) #21	Cept1 (ENSMSIG00000010984) #22	ENSMSIG00000010968	Dennd2d (ENSMSIG00000010912) #23	ENSMSIG00000010909	ENSMSIG00000010904	ENSMSIG00000010882 #24
spretus	MODERN SPECIES	12	Slc6a17 (MGP_SPRETEiJ_G0026453) #7	Kcnc4 (MGP_SPRETEiJ_G0026452) #8	Rbm15 (MGP_SPRETEiJ_G0026451) #9	Slc16a4 (MGP_SPRETEiJ_G0026450) #10	Lamtor5 (MGP_SPRETEiJ_G0026449) #11	Prok1 (MGP_SPRETEiJ_G0026448) #12	MGP_SPRETEiJ_G0026447 #13	Cym (MGP_SPRETEiJ_G0026446) #14	Kcna10 (MGP_SPRETEiJ_G0026445) #15	Kcna2 (MGP_SPRETEiJ_G0026444) #16	Kcna3 (MGP_SPRETEiJ_G0026443) #17	Or11i1 (MGP_SPRETEiJ_G0026442) #18	Cd53 (MGP_SPRETEiJ_G0026441) #19	Lrif1 (MGP_SPRETEiJ_G0026440) #20	Dram2 (MGP_SPRETEiJ_G0026439) #21	Cept1 (MGP_SPRETEiJ_G0026438) #22	Dennd2d (MGP_SPRETEiJ_G0026437) #23	Chil6 (MGP_SPRETEiJ_G0026436) #24	Chia1 (MGP_SPRETEiJ_G0026434) #25	Chil5 (MGP_SPRETEiJ_G0026433) #26	Pifo (MGP_SPRETEiJ_G0026432) #27	Ovgp1 (MGP_SPRETEiJ_G0026431) #28	Wdr77 (MGP_SPRETEiJ_G0026430) #29	Atp5pb (MGP_SPRETEiJ_G0026429) #30	I830077J02Rik (MGP_SPRETEiJ_G0026428) #31	Tmigd3 (MGP_SPRETEiJ_G0026427) #32	MGP_SPRETEiJ_G0026426 #33	Rap1a (MGP_SPRETEiJ_G0026425) #34	Inka2 (MGP_SPRETEiJ_G0026424) #35	Ddx20 (MGP_SPRETEiJ_G0026423) #36	Kcnd3 (MGP_SPRETEiJ_G0026422) #37
Mouse	MODERN SPECIES	12	Ubl4b (ENSMUSG00000055891)	Slc6a17 (ENSMUSG00000027894) #7	Kcnc4 (ENSMUSG00000027895) #8	Rbm15 (ENSMUSG00000048109) #9	Slc16a4 (ENSMUSG00000027896) #10	Lamtor5 (ENSMUSG00000087260) #11	Prok1 (ENSMUSG00000070368) #12	Cym (ENSMUSG00000046213) #14	Kcna10 (ENSMUSG00000042861) #15	Kcna2 (ENSMUSG00000040724) #16	Kcna3 (ENSMUSG00000047959) #17	Or11i1 (ENSMUSG00000043529) #18	Cd53 (ENSMUSG00000040747) #19	Lrif1 (ENSMUSG00000056260) #20	Dram2 (ENSMUSG00000027900) #21	Cept1 (ENSMUSG00000040774) #22	Dennd2d (ENSMUSG00000027901) #23	Chil6 (ENSMUSG00000027902) #24	Chil4 (ENSMUSG00000063779) ##24	Chil3 (ENSMUSG00000040809) ##24	Chia1 (ENSMUSG00000062778) #25	Chil5 (ENSMUSG00000043873) #26	Pifo (ENSMUSG00000010136) #27	Ovgp1 (ENSMUSG00000074340) #28	Wdr77 (ENSMUSG00000000561) #29	Atp5pb (ENSMUSG00000000563) #30	I830077J02Rik (ENSMUSG00000074342) #31	Tmigd3 (ENSMUSG00000074344) #32	Adora3 (ENSMUSG00000000562) #33	Rap1a (ENSMUSG00000068798) #34	Inka2 (ENSMUSG00000048458) #35