Theria	ANCESTRAL SPECIES	4	ENSGT00470000042299	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000164965	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Eutheria	ANCESTRAL SPECIES	9	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Primates	ANCESTRAL SPECIES	5	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Bushbaby	MODERN SPECIES	146	NCR2 (ENSOGAG00000015254) #7	FOXP4 (ENSOGAG00000010113) #8	MDFI (ENSOGAG00000010114) #9	TFEB (ENSOGAG00000010116) #10	PGC (ENSOGAG00000015217) #11	FRS3 (ENSOGAG00000013038) #12	PRICKLE4 (ENSOGAG00000015219) #13	TOMM6 (ENSOGAG00000027968) #14	USP49 (ENSOGAG00000015223) #15	MED20 (ENSOGAG00000015228) #16	BYSL (ENSOGAG00000015234) #17	CCND3 (ENSOGAG00000028111) #18	ENSOGAG00000033136 #19	TAF8 (ENSOGAG00000016885) #20	C6orf132 (ENSOGAG00000031300) #21	GUCA1ANB (ENSOGAG00000034714) #22	GUCA1A (ENSOGAG00000016889) #23	GUCA1B (ENSOGAG00000016891) #24	MRPS10 (ENSOGAG00000016892) #25	TRERF1 (ENSOGAG00000025610) #26	UBR2 (ENSOGAG00000012644) #27	PRPH2 (ENSOGAG00000012661) #28	TBCC (ENSOGAG00000028970) #29	BICRAL (ENSOGAG00000012664) #30	ENSOGAG00000012671 #31	PTCRA (ENSOGAG00000012675) #32	CNPY3 (ENSOGAG00000024957) #33	ENSOGAG00000034570 #34	GNMT (ENSOGAG00000012676) #35	PEX6 (ENSOGAG00000012681) #36	PPP2R5D (ENSOGAG00000012686) #37
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000168448	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.w.b.a.b #31	ENSGT00940000167232	ENSGT00950000182878.b.b.w.a #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Mouse lemur	MODERN SPECIES	28	ENSMICG00000033947	ENSMICG00000042409	NCR2 (ENSMICG00000013695) #7	FOXP4 (ENSMICG00000036858) #8	MDFI (ENSMICG00000015669) #9	TFEB (ENSMICG00000015674) #10	ENSMICG00000041517 #11	FRS3 (ENSMICG00000006286) #12	PRICKLE4 (ENSMICG00000015699) #13	TOMM6 (ENSMICG00000047932) #14	USP49 (ENSMICG00000033911) #15	BYSL (ENSMICG00000011347) #17	CCND3 (ENSMICG00000027138) #18	ENSMICG00000011353 #20	ENSMICG00000044021	GUCA1ANB (ENSMICG00000029430) #22	GUCA1A (ENSMICG00000011368) #23	GUCA1B (ENSMICG00000047497) #24	MRPS10 (ENSMICG00000011379) #25	TRERF1 (ENSMICG00000011387) #26	ENSMICG00000044890	UBR2 (ENSMICG00000003745) #27	PRPH2 (ENSMICG00000044138) #28	BICRAL (ENSMICG00000003774) #30	ENSMICG00000047101 #31	ENSMICG00000003791	PTCRA (ENSMICG00000008212) #32	ENSMICG00000036185	CNPY3 (ENSMICG00000042564) #33	GNMT (ENSMICG00000008225) #35	PEX6 (ENSMICG00000008232) #36
Lemuriformes_a	ANCESTRAL SPECIES	4	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000168448	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.w.a.b #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Coquerels sifaka	MODERN SPECIES	209	ENSPCOG00000000279	NCR2 (ENSPCOG00000008841) #7	FOXP4 (ENSPCOG00000024346) #8	MDFI (ENSPCOG00000021967) #9	TFEB (ENSPCOG00000006243) #10	PGC (ENSPCOG00000028478) #11	FRS3 (ENSPCOG00000010536) #12	PRICKLE4 (ENSPCOG00000014324) #13	TOMM6 (ENSPCOG00000000127) #14	USP49 (ENSPCOG00000026508) #15	MED20 (ENSPCOG00000014401) #16	ENSPCOG00000020727 #17	ENSPCOG00000022903 #18	TAF8 (ENSPCOG00000024880) #20	ENSPCOG00000021266	GUCA1ANB (ENSPCOG00000023632) #22	GUCA1A (ENSPCOG00000028552) #23	GUCA1B (ENSPCOG00000026339) #24	MRPS10 (ENSPCOG00000023681) #25	TRERF1 (ENSPCOG00000014905) #26	ENSPCOG00000022503 #27	PRPH2 (ENSPCOG00000018870) #28	BICRAL (ENSPCOG00000025959) #30	ENSPCOG00000014928 #31	PTCRA (ENSPCOG00000021697) #32	CNPY3 (ENSPCOG00000016021) #33	GNMT (ENSPCOG00000020942) #35	PEX6 (ENSPCOG00000017469) #36	PPP2R5D (ENSPCOG00000021120) #37	MEA1 (ENSPCOG00000008221)	KLHDC3 (ENSPCOG00000024925)
Greater bamboo lemur	MODERN SPECIES	305	NCR2 (ENSPSMG00000014933) #7	FOXP4 (ENSPSMG00000015073) #8	MDFI (ENSPSMG00000015258) #9	TFEB (ENSPSMG00000015301) #10	PGC (ENSPSMG00000015312) #11	FRS3 (ENSPSMG00000015327) #12	PRICKLE4 (ENSPSMG00000015341) #13	ENSPSMG00000015344 #14	USP49 (ENSPSMG00000015351) #15	ENSPSMG00000015365	MED20 (ENSPSMG00000015394) #16	BYSL (ENSPSMG00000015433) #17	CCND3 (ENSPSMG00000015483) #18	TAF8 (ENSPSMG00000015571) #20	ENSPSMG00000015586	GUCA1ANB (ENSPSMG00000015588) #22	GUCA1A (ENSPSMG00000015595) #23	GUCA1B (ENSPSMG00000015611) #24	MRPS10 (ENSPSMG00000015628) #25	TRERF1 (ENSPSMG00000015749) #26	ENSPSMG00000015803	ENSPSMG00000015807	UBR2 (ENSPSMG00000016053) #27	PRPH2 (ENSPSMG00000016187) #28	TBCC (ENSPSMG00000016192) #29	BICRAL (ENSPSMG00000016204) #30	ENSPSMG00000016210	CNPY3 (ENSPSMG00000016229) #33	GNMT (ENSPSMG00000016245) #35	PEX6 (ENSPSMG00000016272) #36	PPP2R5D (ENSPSMG00000016658) #37
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996	ENSGT00940000160303.b #26	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #27	ENSGT00910000147272	ENSGT00940000157303 #28	ENSGT00910000147470	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.`b.a.b.b #31	ENSGT00440000034488	ENSGT00950000182878.b.b.`b.a.b.a.a #31
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996	ENSGT00940000160303.b #26	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #27	ENSGT00910000147272	ENSGT00940000157303 #28	ENSGT00910000147470	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.`b.a.b.b #31	ENSGT00440000034488	ENSGT00390000007712 #32
Hominidae	ANCESTRAL SPECIES	5	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996	ENSGT00940000160303.b #26	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #27	ENSGT00910000147272	ENSGT00940000157303 #28	ENSGT00910000147470	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.`b.a.b.b #31	ENSGT00440000034488	ENSGT00390000007712 #32
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691.c.a #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00500000045496	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996	ENSGT00940000160303.b #26	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #27	ENSGT00910000147272	ENSGT00940000157303 #28	ENSGT00910000147470	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.`b.a.b.b #31	ENSGT00440000034488	ENSGT00390000007712 #32
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691.c.a #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00500000045496	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #27	ENSGT00910000147272	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.`b.a.b.b #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00950000183105.A.m.b
Pan	ANCESTRAL SPECIES	5	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691.c.a #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00500000045496	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #27	ENSGT00910000147272	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.`b.a.b.b.c #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00950000183105.A.m.b
Chimpanzee	MODERN SPECIES	19	NCR2 (ENSPTRG00000018154) #7	FOXP4 (ENSPTRG00000018155) #8	MDFI (ENSPTRG00000018156) #9	TFEB (ENSPTRG00000018157) #10	PGC (ENSPTRG00000018158) #11	FRS3 (ENSPTRG00000018159) #12	ENSPTRG00000018160 #13	TOMM6 (ENSPTRG00000034313) #14	ENSPTRG00000043479 #15	ENSPTRG00000044058	MED20 (ENSPTRG00000018162) #16	BYSL (ENSPTRG00000018163) #17	CCND3 (ENSPTRG00000018164) #18	TAF8 (ENSPTRG00000018165) #20	C6H6orf132 (ENSPTRG00000018166) #21	GUCA1ANB (ENSPTRG00000044074) #22	GUCA1A (ENSPTRG00000018167) #23	GUCA1B (ENSPTRG00000018168) #24	MRPS10 (ENSPTRG00000018169) #25	TRERF1 (ENSPTRG00000018170) #26	ENSPTRG00000048021	ENSPTRG00000044341	UBR2 (ENSPTRG00000018171) #27	ENSPTRG00000043287	PRPH2 (ENSPTRG00000018172) #28	TBCC (ENSPTRG00000018173) #29	BICRAL (ENSPTRG00000018174) #30	RPL7L1 (ENSPTRG00000018175) #31	PTCRA (ENSPTRG00000018176) #32	CNPY3 (ENSPTRG00000018177) #33	ENSPTRG00000029670
Bonobo	MODERN SPECIES	19	TREM1 (ENSPPAG00000041252)	NCR2 (ENSPPAG00000023463) #7	FOXP4 (ENSPPAG00000040751) #8	MDFI (ENSPPAG00000037978) #9	TFEB (ENSPPAG00000038219) #10	PGC (ENSPPAG00000043009) #11	FRS3 (ENSPPAG00000041989) #12	PRICKLE4 (ENSPPAG00000035806) #13	USP49 (ENSPPAG00000018338) #15	ENSPPAG00000005179	MED20 (ENSPPAG00000033578) #16	BYSL (ENSPPAG00000028063) #17	CCND3 (ENSPPAG00000028061) #18	ENSPPAG00000003755 #20	C6orf132 (ENSPPAG00000029653) #21	GUCA1ANB (ENSPPAG00000041508) #22	GUCA1A (ENSPPAG00000038612) #23	GUCA1B (ENSPPAG00000028630) #24	MRPS10 (ENSPPAG00000041229) #25	TRERF1 (ENSPPAG00000032564) #26	ENSPPAG00000000666	UBR2 (ENSPPAG00000028429) #27	ENSPPAG00000041554	PRPH2 (ENSPPAG00000035254) #28	TBCC (ENSPPAG00000005383) #29	BICRAL (ENSPPAG00000041829) #30	ENSPPAG00000028326 #31	C6orf226 (ENSPPAG00000021377)	PTCRA (ENSPPAG00000039945) #32	CNPY3 (ENSPPAG00000036349) #33	GNMT (ENSPPAG00000000924) #35
Human	MODERN SPECIES	18	TREM1 (ENSG00000124731)	NCR2 (ENSG00000096264) #7	FOXP4 (ENSG00000137166) #8	MDFI (ENSG00000112559) #9	TFEB (ENSG00000112561) #10	PGC (ENSG00000096088) #11	FRS3 (ENSG00000137218) #12	PRICKLE4 (ENSG00000278224) #13	TOMM6 (ENSG00000214736) #14	USP49 (ENSG00000164663) #15	MED20 (ENSG00000124641) #16	BYSL (ENSG00000112578) #17	CCND3 (ENSG00000112576) #18	TAF8 (ENSG00000137413) #20	C6orf132 (ENSG00000188112) #21	GUCA1ANB (ENSG00000287363) #22	ENSG00000290147	GUCA1A (ENSG00000048545) #23	GUCA1B (ENSG00000112599) #24	MRPS10 (ENSG00000048544) #25	TRERF1 (ENSG00000124496) #26	UBR2 (ENSG00000024048) #27	PRPH2 (ENSG00000112619) #28	TBCC (ENSG00000124659) #29	BICRAL (ENSG00000112624) #30	RPL7L1 (ENSG00000146223) #31	C6orf226 (ENSG00000221821)	PTCRA (ENSG00000171611) #32	CNPY3 (ENSG00000137161) #33	GNMT (ENSG00000124713) #35	PEX6 (ENSG00000124587) #36
Orangutan	MODERN SPECIES	19	FOXP4 (ENSPPYG00000016596) #8	MDFI (ENSPPYG00000016598) #9	TFEB (ENSPPYG00000016599) #10	PGC (ENSPPYG00000016601) #11	FRS3 (ENSPPYG00000016602) #12	PRICKLE4 (ENSPPYG00000016603) #13	TOMM6 (ENSPPYG00000033566) #14	USP49 (ENSPPYG00000016604) #15	MED20 (ENSPPYG00000016606) #16	BYSL (ENSPPYG00000017273) #17	CCND3 (ENSPPYG00000016607) #18	ENSPPYG00000016608 #20	ENSPPYG00000039497 #21	ENSPPYG00000033111	GUCA1A (ENSPPYG00000016611) #23	GUCA1ANB (ENSPPYG00000037366) #22	GUCA1B (ENSPPYG00000016612) #24	MRPS10 (ENSPPYG00000016613) #25	TRERF1 (ENSPPYG00000016614) #26	ENSPPYG00000034248	UBR2 (ENSPPYG00000016616) #27	PRPH2 (ENSPPYG00000016617) #28	TBCC (ENSPPYG00000017265) #29	BICRAL (ENSPPYG00000016618) #30	RPL7L1 (ENSPPYG00000016619) #31	C6orf226 (ENSPPYG00000016620)	PTCRA (ENSPPYG00000016621) #32	CNPY3 (ENSPPYG00000016622) #33	GNMT (ENSPPYG00000016623) #35	PEX6 (ENSPPYG00000016624) #36	PPP2R5D (ENSPPYG00000016625) #37
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996	ENSGT00940000160303.b #26	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #27	ENSGT00910000147272	ENSGT00940000157303 #28	ENSGT00910000147470	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.`b.a.b.a.a #31	ENSGT00440000034488	ENSGT00950000182878.b.b.`b.b #31
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.h #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996	ENSGT00940000160303.b #26	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #27	ENSGT00910000147272	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.`b.a.b.a.a.b.b #31	ENSGT00440000034488	ENSGT00950000182878.b.b.`b.b.a #31	ENSGT00390000007712 #32
Vervet Monkey	MODERN SPECIES	8	TREML4 (ENSCSAG00000011253) ##7	TREM1 (ENSCSAG00000011258)	FOXP4 (ENSCSAG00000011262) #8	MDFI (ENSCSAG00000011270) #9	TFEB (ENSCSAG00000011274) #10	PGC (ENSCSAG00000011279) #11	FRS3 (ENSCSAG00000011283) #12	PRICKLE4 (ENSCSAG00000011286) #13	TOMM6 (ENSCSAG00000011289) #14	USP49 (ENSCSAG00000011293) #15	MED20 (ENSCSAG00000011299) #16	BYSL (ENSCSAG00000011306) #17	CCND3 (ENSCSAG00000011312) #18	TAF8 (ENSCSAG00000011346) ##20	C6orf132 (ENSCSAG00000011367) #21	GUCA1ANB (ENSCSAG00000011377) #22	GUCA1A (ENSCSAG00000011389) #23	GUCA1B (ENSCSAG00000011404) #24	MRPS10 (ENSCSAG00000011412) #25	TRERF1 (ENSCSAG00000011422) #26	UBR2 (ENSCSAG00000011442) #27	PRPH2 (ENSCSAG00000011454) #28	ENSCSAG00000019300	BICRAL (ENSCSAG00000011469) #30	ENSCSAG00000011487 #31	PTCRA (ENSCSAG00000011495) #32	CNPY3 (ENSCSAG00000011504) #33	GNMT (ENSCSAG00000011512) #35	PEX6 (ENSCSAG00000011522) #36	PPP2R5D (ENSCSAG00000011537) #37	MEA1 (ENSCSAG00000011526)
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.h #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996	ENSGT00940000160303.b #26	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #27	ENSGT00910000147272	ENSGT00940000157303 #28	ENSGT00550000074873.b	ENSGT00940000154400.a.b	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.`b.a.b.a.a.b.b #31	ENSGT00440000034488
Cercopithecinae_b	ANCESTRAL SPECIES	18	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.h #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996	ENSGT00940000160303.b #26	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #27	ENSGT00910000147272	ENSGT00940000157303 #28	ENSGT00550000074873.b	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.`b.a.b.a.a.b.b #31	ENSGT00440000034488	ENSGT00950000182878.b.b.`b.b.a #31
Olive baboon	MODERN SPECIES	16	TREM1 (ENSPANG00000015746)	NCR2 (ENSPANG00000007120) #7	FOXP4 (ENSPANG00000018703) #8	MDFI (ENSPANG00000021605) #9	TFEB (ENSPANG00000009713) #10	PGC (ENSPANG00000001300) #11	FRS3 (ENSPANG00000017337) #12	PRICKLE4 (ENSPANG00000017338) #13	TOMM6 (ENSPANG00000048754) #14	USP49 (ENSPANG00000018044) #15	MED20 (ENSPANG00000021506) #16	BYSL (ENSPANG00000041019) #17	CCND3 (ENSPANG00000022611) #18	TAF8 (ENSPANG00000016963) #20	C6orf132 (ENSPANG00000040893) #21	GUCA1ANB (ENSPANG00000021577) #22	GUCA1A (ENSPANG00000042377) #23	GUCA1B (ENSPANG00000024034) #24	MRPS10 (ENSPANG00000037120) #25	TRERF1 (ENSPANG00000009451) #26	ENSPANG00000047444	UBR2 (ENSPANG00000011151) #27	PRPH2 (ENSPANG00000018347) #28	ENSPANG00000049589	TBCC (ENSPANG00000025697) #29	BICRAL (ENSPANG00000009449) #30	ENSPANG00000008439 #31	CNPY3 (ENSPANG00000022346) #33	GNMT (ENSPANG00000022693) #35	PEX6 (ENSPANG00000024222) #36	PPP2R5D (ENSPANG00000000811) #37
Macaca	ANCESTRAL SPECIES	9	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.h #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00550000074873.b	ENSGT00940000154400.a.b	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.`b.a.b.a.a.b.b #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.h #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000166143.A.a.b.a.b.a.a.a.b	ENSGT00940000157303 #28	ENSGT00550000074873.b	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.`b.a.b.a.a.b.b #31	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Rhesus	MODERN SPECIES	14	TREML2 (ENSMMUG00000049500) ##7	TREM1 (ENSMMUG00000003674)	NCR2 (ENSMMUG00000003675) #7	ENSMMUG00000063258	FOXP4 (ENSMMUG00000019985) #8	MDFI (ENSMMUG00000009449) #9	TFEB (ENSMMUG00000004690) #10	PGC (ENSMMUG00000048466) #11	FRS3 (ENSMMUG00000012417) #12	PRICKLE4 (ENSMMUG00000012419) #13	USP49 (ENSMMUG00000012421) #15	BYSL (ENSMMUG00000004416) #17	CCND3 (ENSMMUG00000004419) #18	TAF8 (ENSMMUG00000012470) #20	C4H6orf132 (ENSMMUG00000042009) #21	GUCA1ANB (ENSMMUG00000047592) #22	GUCA1A (ENSMMUG00000000872) #23	GUCA1B (ENSMMUG00000003999) #24	TRERF1 (ENSMMUG00000005575) #26	UBR2 (ENSMMUG00000005675) #27	ENSMMUG00000059702	PRPH2 (ENSMMUG00000057019) #28	ENSMMUG00000005679	TBCC (ENSMMUG00000001305) #29	BICRAL (ENSMMUG00000029682) #30	ENSMMUG00000053755	RPL7L1 (ENSMMUG00000021313) #31	ENSMMUG00000056117	PTCRA (ENSMMUG00000000460) #32	CNPY3 (ENSMMUG00000058425) #33	GNMT (ENSMMUG00000001393) #35
Crab-eating macaque	MODERN SPECIES	14	FOXP4 (ENSMFAG00000033620) #8	MDFI (ENSMFAG00000004961) #9	TFEB (ENSMFAG00000040195) #10	PGC (ENSMFAG00000038363) #11	FRS3 (ENSMFAG00000037819) #12	PRICKLE4 (ENSMFAG00000034421) #13	TOMM6 (ENSMFAG00000028918) #14	MED20 (ENSMFAG00000057486) #16	BYSL (ENSMFAG00000033214) #17	USP49 (ENSMFAG00000040586) #15	CCND3 (ENSMFAG00000039022) #18	ENSMFAG00000048664	TAF8 (ENSMFAG00000037574) #20	ENSMFAG00000044246	ENSMFAG00000065376	ENSMFAG00000003087 #22	GUCA1A (ENSMFAG00000035647) #23	GUCA1B (ENSMFAG00000031539) #24	MRPS10 (ENSMFAG00000046129) #25	ENSMFAG00000061896	TRERF1 (ENSMFAG00000045736) #26	UBR2 (ENSMFAG00000041378) #27	ENSMFAG00000063980	PRPH2 (ENSMFAG00000037918) #28	TBCC (ENSMFAG00000003179) #29	BICRAL (ENSMFAG00000001446) #30	ENSMFAG00000054119	RPL7L1 (ENSMFAG00000053469) #31	CNPY3 (ENSMFAG00000030669) #33	GNMT (ENSMFAG00000045063) #35	PEX6 (ENSMFAG00000034586) #36
Pig-tailed macaque	MODERN SPECIES	157	TREML4 (ENSMNEG00000038195) ##7	TREM1 (ENSMNEG00000006419)	NCR2 (ENSMNEG00000044377) #7	FOXP4 (ENSMNEG00000002954) #8	MDFI (ENSMNEG00000036442) #9	TFEB (ENSMNEG00000036203) #10	PGC (ENSMNEG00000028197) #11	FRS3 (ENSMNEG00000023654) #12	ENSMNEG00000037078 #14	PRICKLE4 (ENSMNEG00000037818) #13	USP49 (ENSMNEG00000043085) #15	BYSL (ENSMNEG00000043045) #17	CCND3 (ENSMNEG00000037933) #18	TAF8 (ENSMNEG00000037201) #20	C6orf132 (ENSMNEG00000031453) #21	GUCA1ANB (ENSMNEG00000030746) #22	GUCA1A (ENSMNEG00000032487) #23	GUCA1B (ENSMNEG00000039223) #24	MRPS10 (ENSMNEG00000041503) #25	TRERF1 (ENSMNEG00000042787) #26	UBR2 (ENSMNEG00000044587) #27	PRPH2 (ENSMNEG00000042503) #28	ENSMNEG00000000026	ENSMNEG00000029388	TBCC (ENSMNEG00000029588) #29	BICRAL (ENSMNEG00000038559) #30	ENSMNEG00000033812 #31	PTCRA (ENSMNEG00000033559) #32	CNPY3 (ENSMNEG00000044020) #33	GNMT (ENSMNEG00000036639) #35	PEX6 (ENSMNEG00000039925) #36
Rhinopithecus	ANCESTRAL SPECIES	26	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000164010	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00910000147470	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.`b.a.b.a.a.c.b.a #31	ENSGT00950000182878.b.b.`b.a.b.a.a.c.a #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35
Black snub-nosed monkey	MODERN SPECIES	593		NCR2 (ENSRBIG00000040162) #7	FOXP4 (ENSRBIG00000032681) #8	MDFI (ENSRBIG00000041804) #9	TFEB (ENSRBIG00000007714) #10	PGC (ENSRBIG00000038339) #11	FRS3 (ENSRBIG00000031884) #12	ENSRBIG00000035540 #14	PRICKLE4 (ENSRBIG00000034766) #13	USP49 (ENSRBIG00000040256) #15	MED20 (ENSRBIG00000025814) #16	BYSL (ENSRBIG00000030183) #17	CCND3 (ENSRBIG00000037954) #18	TAF8 (ENSRBIG00000040154) #20	C6orf132 (ENSRBIG00000040715) #21	GUCA1ANB (ENSRBIG00000033615) #22	GUCA1A (ENSRBIG00000037690) #23	GUCA1B (ENSRBIG00000038802) #24	MRPS10 (ENSRBIG00000034975) #25	ENSRBIG00000033519	TRERF1 (ENSRBIG00000030162) #26	UBR2 (ENSRBIG00000039033) #27	PRPH2 (ENSRBIG00000043861) #28	TBCC (ENSRBIG00000003966) #29	BICRAL (ENSRBIG00000038859) #30	ENSRBIG00000041359 #31	PTCRA (ENSRBIG00000008300) #32	CNPY3 (ENSRBIG00000044857) #33	GNMT (ENSRBIG00000044856) #35	PEX6 (ENSRBIG00000027362) #36	PPP2R5D (ENSRBIG00000026732) #37
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.f #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.cb.b.a #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Cebidae	ANCESTRAL SPECIES	5	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.f #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.cb.b.a #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Cebidae_a	ANCESTRAL SPECIES	25	ENSGT00940000153835.a.b.c.a.a ##7	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.cb.b.a #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	49	TREML4 (ENSSBOG00000013316) ##7	TREM1 (ENSSBOG00000022642)	NCR2 (ENSSBOG00000001345) #7	FOXP4 (ENSSBOG00000031733) #8	MDFI (ENSSBOG00000025433) #9	TFEB (ENSSBOG00000030350) #10	PGC (ENSSBOG00000024240) #11	FRS3 (ENSSBOG00000034869) #12	PRICKLE4 (ENSSBOG00000018251) #13	USP49 (ENSSBOG00000000054) #15	MED20 (ENSSBOG00000028787) #16	BYSL (ENSSBOG00000034517) #17	CCND3 (ENSSBOG00000021250) #18	TAF8 (ENSSBOG00000025407) #20	C6orf132 (ENSSBOG00000023219) #21	ENSSBOG00000028532 #22	GUCA1A (ENSSBOG00000031079) #23	GUCA1B (ENSSBOG00000034300) #24	MRPS10 (ENSSBOG00000022651) #25	ENSSBOG00000020519	TRERF1 (ENSSBOG00000030453) #26	UBR2 (ENSSBOG00000032257) #27	PRPH2 (ENSSBOG00000022403) #28	BICRAL (ENSSBOG00000033360) #30	PTCRA (ENSSBOG00000025093) #32	CNPY3 (ENSSBOG00000035845) #33	GNMT (ENSSBOG00000023382) #35	PEX6 (ENSSBOG00000021202) #36	ENSSBOG00000020796	PPP2R5D (ENSSBOG00000033250) #37	ENSSBOG00000000614
Bolivian squirrel monkey	MODERN SPECIES	10																ENSSBOG00000028362 #22
Capuchin	MODERN SPECIES	197	TREM1 (ENSCCAG00000035739)	NCR2 (ENSCCAG00000018571) #7	FOXP4 (ENSCCAG00000021468) #8	MDFI (ENSCCAG00000021635) #9	TFEB (ENSCCAG00000036755) #10	PGC (ENSCCAG00000032433) #11	FRS3 (ENSCCAG00000023089) #12	PRICKLE4 (ENSCCAG00000035589) #13	USP49 (ENSCCAG00000035356) #15	MED20 (ENSCCAG00000025677) #16	BYSL (ENSCCAG00000036583) #17	CCND3 (ENSCCAG00000023865) #18	ENSCCAG00000032788	TAF8 (ENSCCAG00000019516) #20	C6orf132 (ENSCCAG00000020133) #21	GUCA1ANB (ENSCCAG00000036979) #22	GUCA1A (ENSCCAG00000034483) #23	GUCA1B (ENSCCAG00000034846) #24	MRPS10 (ENSCCAG00000037430) #25	TRERF1 (ENSCCAG00000037441) #26	UBR2 (ENSCCAG00000027347) #27	PRPH2 (ENSCCAG00000035220) #28	BICRAL (ENSCCAG00000022238) #30	ENSCCAG00000026245 #31	C6orf226 (ENSCCAG00000028662)	PTCRA (ENSCCAG00000027445) #32	CNPY3 (ENSCCAG00000031450) #33	PEX6 (ENSCCAG00000029488) #36	GNMT (ENSCCAG00000035170) #35	PPP2R5D (ENSCCAG00000021529) #37	ENSCCAG00000032843
Marmoset	MODERN SPECIES	16	MDFI (ENSCJAG00000044429) #9	TFEB (ENSCJAG00000004199) #10	PGC (ENSCJAG00000004226) #11	FRS3 (ENSCJAG00000004240) #12	PRICKLE4 (ENSCJAG00000004246) #13	ENSCJAG00000081865 #14	USP49 (ENSCJAG00000004251) #15	MED20 (ENSCJAG00000004259) #16	BYSL (ENSCJAG00000004266) #17	CCND3 (ENSCJAG00000004284) #18	ENSCJAG00000084284	ENSCJAG00000070491	ENSCJAG00000083522	TAF8 (ENSCJAG00000004292) #20	C6orf132 (ENSCJAG00000039441) #21	GUCA1ANB (ENSCJAG00000042922) #22	GUCA1A (ENSCJAG00000004301) #23	GUCA1B (ENSCJAG00000070620) #24	MRPS10 (ENSCJAG00000075253) #25	TRERF1 (ENSCJAG00000004347) #26	UBR2 (ENSCJAG00000004399) #27	PRPH2 (ENSCJAG00000004580) #28	ENSCJAG00000074599 #29	BICRAL (ENSCJAG00000004594) #30	ENSCJAG00000004637 #31	C6orf226 (ENSCJAG00000023341)	ENSCJAG00000086222	CNPY3 (ENSCJAG00000004662) #33	GNMT (ENSCJAG00000004675) #35	PEX6 (ENSCJAG00000004684) #36	PPP2R5D (ENSCJAG00000004782) #37
Mas night monkey	MODERN SPECIES	882	NCR2 (ENSANAG00000031953) #7	FOXP4 (ENSANAG00000029480) #8	MDFI (ENSANAG00000031928) #9	TFEB (ENSANAG00000035745) #10	PGC (ENSANAG00000033780) #11	FRS3 (ENSANAG00000020838) #12	PRICKLE4 (ENSANAG00000019187) #13	TOMM6 (ENSANAG00000032387) #14	USP49 (ENSANAG00000021297) #15	MED20 (ENSANAG00000030569) #16	BYSL (ENSANAG00000036138) #17	CCND3 (ENSANAG00000027461) #18	TAF8 (ENSANAG00000027075) #20	ENSANAG00000019684	C6orf132 (ENSANAG00000027834) #21	GUCA1ANB (ENSANAG00000021488) #22	GUCA1A (ENSANAG00000019979) #23	GUCA1B (ENSANAG00000037665) #24	MRPS10 (ENSANAG00000034917) #25	ENSANAG00000038064	TRERF1 (ENSANAG00000024278) #26	ENSANAG00000022408	UBR2 (ENSANAG00000029753) #27	PRPH2 (ENSANAG00000023340) #28	BICRAL (ENSANAG00000036073) #30	ENSANAG00000024167 #31	PTCRA (ENSANAG00000025975) #32	CNPY3 (ENSANAG00000023982) #33	GNMT (ENSANAG00000021291) #35	PEX6 (ENSANAG00000032772) #36	ENSANAG00000033080
Tarsier	MODERN SPECIES	5193		FOXP4 (ENSTSYG00000030741) #8	MDFI (ENSTSYG00000006245) #9	TFEB (ENSTSYG00000030287) #10	PGC (ENSTSYG00000031976) #11	FRS3 (ENSTSYG00000001230) #12	PRICKLE4 (ENSTSYG00000037133) #13	TOMM6 (ENSTSYG00000036201) #14	USP49 (ENSTSYG00000014109) #15	MED20 (ENSTSYG00000008567) #16	BYSL (ENSTSYG00000029904) #17	CCND3 (ENSTSYG00000001391) #18	ENSTSYG00000036050	TAF8 (ENSTSYG00000007576) #20	ENSTSYG00000008103	GUCA1ANB (ENSTSYG00000034451) #22	GUCA1A (ENSTSYG00000029875) #23	GUCA1B (ENSTSYG00000006949) #24	MRPS10 (ENSTSYG00000028450) #25	TRERF1 (ENSTSYG00000003874) #26	UBR2 (ENSTSYG00000011535) #27	PRPH2 (ENSTSYG00000011558) #28	SRCIN1 (ENSTSYG00000033236)
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Glires	ANCESTRAL SPECIES	5	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Rodentia	ANCESTRAL SPECIES	6	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00470000042299	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00940000164010	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00470000042299	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00940000164010	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927	ENSGT00940000157952
Guinea pig	MODERN SPECIES	15	ENSCPOG00000038425 ##7	ENSCPOG00000032015	FOXP4 (ENSCPOG00000022669) #8	MDFI (ENSCPOG00000011270) #9	TFEB (ENSCPOG00000008027) #10	Pgc (ENSCPOG00000007183) #11	FRS3 (ENSCPOG00000009128) #12	PRICKLE4 (ENSCPOG00000025180) #13	TOMM6 (ENSCPOG00000026731) #14	USP49 (ENSCPOG00000014200) #15	MED20 (ENSCPOG00000004401) #16	BYSL (ENSCPOG00000004403) #17	CCND3 (ENSCPOG00000025856) #18	TAF8 (ENSCPOG00000037188) #20	ENSCPOG00000008967	GUCA1ANB (ENSCPOG00000025639) #22	GUCA1A (ENSCPOG00000015715) #23	GUCA1B (ENSCPOG00000009971) #24	MRPS10 (ENSCPOG00000038656) #25	TRERF1 (ENSCPOG00000015717) #26	UBR2 (ENSCPOG00000008040) #27	PRPH2 (ENSCPOG00000008060) #28	BICRAL (ENSCPOG00000005531) #30	RPL7L1 (ENSCPOG00000021189) #31	ENSCPOG00000011961 #32	CNPY3 (ENSCPOG00000024487) #33	GNMT (ENSCPOG00000033341) #35	PEX6 (ENSCPOG00000008867) #36	PPP2R5D (ENSCPOG00000010949) #37	MEA1 (ENSCPOG00000022111)	KLHDC3 (ENSCPOG00000020000)
Sciuridae	ANCESTRAL SPECIES	1	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Marmotini	ANCESTRAL SPECIES	18	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626.g.a.a #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Alpin marmot	MODERN SPECIES	20	MDFI (ENSMMMG00000024477) #9	TFEB (ENSMMMG00000024479) #10	ENSMMMG00000024480 #11	ENSMMMG00000024481 #11	ENSMMMG00000024482 #11	ENSMMMG00000024483	ENSMMMG00000024484 #11	FRS3 (ENSMMMG00000024485) #12	TOMM6 (ENSMMMG00000024487) #14	USP49 (ENSMMMG00000024489) #15	MED20 (ENSMMMG00000024491) #16	BYSL (ENSMMMG00000024493) #17	CCND3 (ENSMMMG00000024495) #18	TAF8 (ENSMMMG00000024498) #20	C6orf132 (ENSMMMG00000024504) #21	GUCA1ANB (ENSMMMG00000024506) #22	GUCA1A (ENSMMMG00000024507) #23	GUCA1B (ENSMMMG00000024508) #24	MRPS10 (ENSMMMG00000024510) #25	TRERF1 (ENSMMMG00000024512) #26	UBR2 (ENSMMMG00000024514) #27	ENSMMMG00000024515	PRPH2 (ENSMMMG00000024516) #28	TBCC (ENSMMMG00000024517) #29	BICRAL (ENSMMMG00000024518) #30	ENSMMMG00000024521 #31	ENSMMMG00000024524 #32	CNPY3 (ENSMMMG00000024525) #33	GNMT (ENSMMMG00000024526) #35	PEX6 (ENSMMMG00000024527) #36	PPP2R5D (ENSMMMG00000024528) #37
Marmotini_b	ANCESTRAL SPECIES	8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626.g.a.a #11	ENSGT00940000160626.g.a.b #11	ENSGT00940000160626.h.a #11	ENSGT00940000160626.h.b #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00940000167232	ENSGT00950000182878.b.b #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Arctic ground squirrel	MODERN SPECIES	25	TFEB (ENSUPAG00010017231) #10	ENSUPAG00010017263 #11	ENSUPAG00010017268 #11	ENSUPAG00010017270 #11	ENSUPAG00010017278 #11	FRS3 (ENSUPAG00010017434) #12	PRICKLE4 (ENSUPAG00010017449) #13	TOMM6 (ENSUPAG00010017460) #14	USP49 (ENSUPAG00010017466) #15	ENSUPAG00010017473	MED20 (ENSUPAG00010017477) #16	BYSL (ENSUPAG00010017483) #17	ENSUPAG00010017494 #18	TAF8 (ENSUPAG00010017545) #20	C6orf132 (ENSUPAG00010017552) #21	GUCA1ANB (ENSUPAG00010017561) #22	GUCA1A (ENSUPAG00010017567) #23	GUCA1B (ENSUPAG00010017574) #24	MRPS10 (ENSUPAG00010017579) #25	TRERF1 (ENSUPAG00010017612) #26	UBR2 (ENSUPAG00010017681) #27	PRPH2 (ENSUPAG00010017789) #28	TBCC (ENSUPAG00010017795) #29	BICRAL (ENSUPAG00010017797) #30	ENSUPAG00010017818	ENSUPAG00010017828	ENSUPAG00010017837 #32	CNPY3 (ENSUPAG00010017840) #33	GNMT (ENSUPAG00010017846) #35	PEX6 (ENSUPAG00010017851) #36	PPP2R5D (ENSUPAG00010017909) #37
Squirrel	MODERN SPECIES	76	ENSSTOG00000026734 #11	ENSSTOG00000027884 #11	ENSSTOG00000028126	ENSSTOG00000022561 #11	ENSSTOG00000032241 #11	ENSSTOG00000006547 #11	FRS3 (ENSSTOG00000006583) #12	PRICKLE4 (ENSSTOG00000006618) #13	TOMM6 (ENSSTOG00000027205) #14	USP49 (ENSSTOG00000025366) #15	MED20 (ENSSTOG00000015649) #16	BYSL (ENSSTOG00000021848) #17	CCND3 (ENSSTOG00000021553) #18	TAF8 (ENSSTOG00000015660) #20	ENSSTOG00000020834	ENSSTOG00000028530 #22	GUCA1A (ENSSTOG00000023474) #23	GUCA1B (ENSSTOG00000029266) #24	MRPS10 (ENSSTOG00000027016) #25	TRERF1 (ENSSTOG00000022996) #26	UBR2 (ENSSTOG00000025376) #27	PRPH2 (ENSSTOG00000034259) #28	TBCC (ENSSTOG00000009828) #29	BICRAL (ENSSTOG00000009833) #30	ENSSTOG00000033032	RPL7L1 (ENSSTOG00000030480) #31	ENSSTOG00000031403 #32	CNPY3 (ENSSTOG00000027284) #33	GNMT (ENSSTOG00000009464) #35	PEX6 (ENSSTOG00000009471) #36	PPP2R5D (ENSSTOG00000020905) #37
Eurasian red squirrel	MODERN SPECIES	16	FOXP4 (ENSSVLG00005011599) #8	MDFI (ENSSVLG00005011488) #9	TFEB (ENSSVLG00005011275) #10	ENSSVLG00005010996 #11	ENSSVLG00005010518 #11	ENSSVLG00005010387 #11	ENSSVLG00005010119 #11	FRS3 (ENSSVLG00005010054) #12	ENSSVLG00005009846 #14	USP49 (ENSSVLG00005009753) #15	MED20 (ENSSVLG00005009716) #16	BYSL (ENSSVLG00005009680) #17	CCND3 (ENSSVLG00005009557) #18	ENSSVLG00005009511	TAF8 (ENSSVLG00005009379) #20	ENSSVLG00005009295 #22	GUCA1A (ENSSVLG00005009248) #23	GUCA1B (ENSSVLG00005009219) #24	MRPS10 (ENSSVLG00005009185) #25	TRERF1 (ENSSVLG00005008763) #26	ENSSVLG00005008700	ENSSVLG00005008679	UBR2 (ENSSVLG00005008573) #27	PRPH2 (ENSSVLG00005008515) #28	TBCC (ENSSVLG00005008498) #29	BICRAL (ENSSVLG00005008432) #30	ENSSVLG00005008408 #31	CNPY3 (ENSSVLG00005008168) #33	GNMT (ENSSVLG00005008120) #35	PEX6 (ENSSVLG00005008076) #36	PPP2R5D (ENSSVLG00005007937) #37
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Myomorpha	ANCESTRAL SPECIES	11	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.p #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Muroidea	ANCESTRAL SPECIES	42	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.p #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00900000143235	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.p #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Cricetidae	ANCESTRAL SPECIES	9	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241.i #17	ENSGT00940000160743 #18	ENSGT00390000017567.g #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00900000143235	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.p #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Cricetinae	ANCESTRAL SPECIES	28	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241.i #17	ENSGT00940000160743 #18	ENSGT00390000017567.g #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00900000143235	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.p #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Golden Hamster	MODERN SPECIES	649	1700067P10Rik (ENSMAUG00000015408)	1700122O11Rik (ENSMAUG00000015368)	Foxp4 (ENSMAUG00000012077) #8	ENSMAUG00000010957	Mdfi (ENSMAUG00000013318) #9	Tfeb (ENSMAUG00000012025) #10	Pgc (ENSMAUG00000009628) #11	Frs3 (ENSMAUG00000014355) #12	Prickle4 (ENSMAUG00000013903) #13	Usp49 (ENSMAUG00000012217) #15	Med20 (ENSMAUG00000011361) #16	Bysl (ENSMAUG00000010845) #17	Ccnd3 (ENSMAUG00000010374) #18	Taf8 (ENSMAUG00000000242) #20	AI661453 (ENSMAUG00000019106) #21	ENSMAUG00000014964 #22	Guca1a (ENSMAUG00000014252) #23	Guca1b (ENSMAUG00000012246) #24	Mrps10 (ENSMAUG00000018141) #25	Trerf1 (ENSMAUG00000016098) #26	Ubr2 (ENSMAUG00000009976) #27	Tbcc (ENSMAUG00000001324) #29	ENSMAUG00000014668	Bicral (ENSMAUG00000014344) #30	Rpl7l1 (ENSMAUG00000010525) #31	2310039H08Rik (ENSMAUG00000010383)	Ptcra (ENSMAUG00000017220) #32	Cnpy3 (ENSMAUG00000017045) #33	Gnmt (ENSMAUG00000016515) #35	Pex6 (ENSMAUG00000015976) #36	Ppp2r5d (ENSMAUG00000010413) #37
Chinese hamster chok1gshd	MODERN SPECIES	184	Mtch1 (ENSCGRG00001011402)	Pi16 (ENSCGRG00001007606)	BC004004 (ENSCGRG00001023827)	Ppil1 (ENSCGRG00001023664)	Cpne5 (ENSCGRG00001022541)	Rab44 (ENSCGRG00001019434)	Cdkn1a (ENSCGRG00001016153)	ENSCGRG00001014666	Stk38 (ENSCGRG00001013681)	Kctd20 (ENSCGRG00001012722)	ENSCGRG00001010109 #17	ENSCGRG00001006626 #17	Ccnd3 (ENSCGRG00001003998) #18	Taf8 (ENSCGRG00001002329) #20	ENSCGRG00001000427	1700001C19Rik (ENSCGRG00001013888) #22	Guca1a (ENSCGRG00001013312) #23	Guca1b (ENSCGRG00001012958) #24	Mrps10 (ENSCGRG00001007617) #25	Trerf1 (ENSCGRG00001001250) #26	Ubr2 (ENSCGRG00001005446) #27	Prph2 (ENSCGRG00001017570) #28	Tbcc (ENSCGRG00001012387) #29	Bicral (ENSCGRG00001000750) #30	Rpl7l1 (ENSCGRG00001023262) #31	2310039H08Rik (ENSCGRG00001002644)	Ptcra (ENSCGRG00001020848) #32	Cnpy3 (ENSCGRG00001024003) #33	Gnmt (ENSCGRG00001020404) #35	Pex6 (ENSCGRG00001014931) #36	ENSCGRG00001011102 #37
Cricetidae_B	ANCESTRAL SPECIES	32	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241.i #17	ENSGT00940000160743 #18	ENSGT00390000017567.h #20	ENSGT00390000017567.g #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.p #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Prairie vole	MODERN SPECIES	352	1700122O11Rik (ENSMOCG00000014775)	Foxp4 (ENSMOCG00000021065) #8	Mdfi (ENSMOCG00000018141) #9	Tfeb (ENSMOCG00000001065) #10	Pgc (ENSMOCG00000010583) #11	Frs3 (ENSMOCG00000007370) #12	Prickle4 (ENSMOCG00000003655) #13	Tomm6 (ENSMOCG00000008944) #14	Usp49 (ENSMOCG00000007999) #15	Med20 (ENSMOCG00000013536) #16	Bysl (ENSMOCG00000002210) #17	Ccnd3 (ENSMOCG00000013065) #18	ENSMOCG00000021707	Taf8 (ENSMOCG00000022773) #20	AI661453 (ENSMOCG00000017972) #21	ENSMOCG00000015861 #22	Guca1a (ENSMOCG00000012937) #23	Guca1b (ENSMOCG00000015159) #24	Mrps10 (ENSMOCG00000012423) #25	Trerf1 (ENSMOCG00000006782) #26	Ubr2 (ENSMOCG00000011858) #27	Prph2 (ENSMOCG00000013387) #28	Tbcc (ENSMOCG00000004719) #29	Bicral (ENSMOCG00000011653) #30	Rpl7l1 (ENSMOCG00000020093) #31	Ptcra (ENSMOCG00000013331) #32	Cnpy3 (ENSMOCG00000022685) #33	ENSMOCG00000004686 #35	Pex6 (ENSMOCG00000001645) #36	Ppp2r5d (ENSMOCG00000019501) #37	ENSMOCG00000010358
Northern American deer mouse	MODERN SPECIES	13	1700122O11Rik (ENSPEMG00000001711)	Foxp4 (ENSPEMG00000022403) #8	Mdfi (ENSPEMG00000023317) #9	Tfeb (ENSPEMG00000023738) #10	Pgc (ENSPEMG00000024008) #11	Frs3 (ENSPEMG00000016427) #12	Prickle4 (ENSPEMG00000010462) #13	Tomm6 (ENSPEMG00000026396) #14	Usp49 (ENSPEMG00000003741) #15	ENSPEMG00000029127	Med20 (ENSPEMG00000006688) #16	Bysl (ENSPEMG00000022283) #17	ENSPEMG00000026066 #18	ENSPEMG00000023347 #20	AI661453 (ENSPEMG00000008630) #21	ENSPEMG00000023958 #22	Guca1a (ENSPEMG00000002406) #23	Guca1b (ENSPEMG00000020343) #24	Mrps10 (ENSPEMG00000021650) #25	Trerf1 (ENSPEMG00000015708) #26	Ubr2 (ENSPEMG00000009594) #27	Prph2 (ENSPEMG00000025130) #28	Tbcc (ENSPEMG00000000808) #29	Bicral (ENSPEMG00000014823) #30	Rpl7l1 (ENSPEMG00000000965) #31	ENSPEMG00000031400	ENSPEMG00000025306	Ptcra (ENSPEMG00000009914) #32	Cnpy3 (ENSPEMG00000013516) #33	Gnmt (ENSPEMG00000011330) #35	Pex6 (ENSPEMG00000001714) #36
Murinae	ANCESTRAL SPECIES	9	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00900000143235	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.p #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Mus	ANCESTRAL SPECIES	16	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00900000143235	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.p #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Mus_A	ANCESTRAL SPECIES	10	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626.e #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743.m #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00900000143235	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.p #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Mus_B	ANCESTRAL SPECIES	9	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626.e #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743.m #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00900000143235	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.p #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Mus_C	ANCESTRAL SPECIES	9	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626.e #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.r #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743.m #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00900000143235	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.p #31	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Steppe mouse	MODERN SPECIES	3015	1700122O11Rik (ENSMSIG00000031759)	Foxp4 (ENSMSIG00000031750) #8	Mdfi (ENSMSIG00000031746) #9	Tfeb (ENSMSIG00000031743) #10	ENSMSIG00000031742 #11	Frs3 (ENSMSIG00000031741) #12	Prickle4 (ENSMSIG00000031740) #13	Tomm6 (ENSMSIG00000031739) #14	ENSMSIG00000031738	Usp49 (ENSMSIG00000031735) #15	Med20 (ENSMSIG00000031732) #16	Bysl (ENSMSIG00000031729) #17	Ccnd3 (ENSMSIG00000031726) #18	Taf8 (ENSMSIG00000031720) #20	AI661453 (ENSMSIG00000031717) #21	1700001C19Rik (ENSMSIG00000031712) #22	Guca1b (ENSMSIG00000031708) #24	ENSMSIG00000031705 #25	Trerf1 (ENSMSIG00000031638) #26	ENSMSIG00000031635	ENSMSIG00000031634	Ubr2 (ENSMSIG00000031624) #27	Prph2 (ENSMSIG00000031620) #28	Tbcc (ENSMSIG00000031618) #29
spretus	MODERN SPECIES	8	Foxp4 (MGP_SPRETEiJ_G0022626) #8	Mdfi (MGP_SPRETEiJ_G0022625) #9	Tfeb (MGP_SPRETEiJ_G0022624) #10	Pgc (MGP_SPRETEiJ_G0022623) #11	Frs3 (MGP_SPRETEiJ_G0022622) #12	MGP_SPRETEiJ_G0022621 #13	MGP_SPRETEiJ_G0022620 #13	Tomm6 (MGP_SPRETEiJ_G0022619) #14	Usp49 (MGP_SPRETEiJ_G0022618) #15	MGP_SPRETEiJ_G0022617 #16	Med20 (MGP_SPRETEiJ_G0022616) #16	Bysl (MGP_SPRETEiJ_G0022615) #17	Ccnd3 (MGP_SPRETEiJ_G0022614) #18	Taf8 (MGP_SPRETEiJ_G0022613) #20	MGP_SPRETEiJ_G0022612	1700001C19Rik (MGP_SPRETEiJ_G0022611) #22	Guca1a (MGP_SPRETEiJ_G0022610) #23	Guca1b (MGP_SPRETEiJ_G0022609) #24	Mrps10 (MGP_SPRETEiJ_G0022608) #25	MGP_SPRETEiJ_G0022607	Ubr2 (MGP_SPRETEiJ_G0022606) #27	Prph2 (MGP_SPRETEiJ_G0022605) #28	Tbcc (MGP_SPRETEiJ_G0022604) #29	MGP_SPRETEiJ_G0022603	Bicral (MGP_SPRETEiJ_G0022602) #30	Rpl7l1 (MGP_SPRETEiJ_G0022601) #31	2310039H08Rik (MGP_SPRETEiJ_G0022600)	Ptcra (MGP_SPRETEiJ_G0022599) #32	Cnpy3 (MGP_SPRETEiJ_G0022598) #33	Gnmt (MGP_SPRETEiJ_G0022597) #35	Pex6 (MGP_SPRETEiJ_G0022596) #36
Mouse	MODERN SPECIES	8	1700067P10Rik (ENSMUSG00000021545)	1700122O11Rik (ENSMUSG00000094928)	Foxp4 (ENSMUSG00000023991) #8	Mdfi (ENSMUSG00000032717) #9	Tfeb (ENSMUSG00000023990) #10	Pgc (ENSMUSG00000023987) #11	Frs3 (ENSMUSG00000023266) #12	Prickle4 (ENSMUSG00000096549) #13	Tomm6 (ENSMUSG00000033475) #14	Usp49 (ENSMUSG00000090115) #15	Med20 (ENSMUSG00000092558) #16	Bysl (ENSMUSG00000023988) #17	Ccnd3 (ENSMUSG00000034165) #18	Taf8 (ENSMUSG00000023980) #20	AI661453 (ENSMUSG00000034382) #21	1700001C19Rik (ENSMUSG00000047150) #22	Guca1a (ENSMUSG00000023982) #23	Guca1b (ENSMUSG00000023979) #24	Mrps10 (ENSMUSG00000034729) #25	Trerf1 (ENSMUSG00000064043) #26	Ubr2 (ENSMUSG00000023977) #27	Prph2 (ENSMUSG00000023978) #28	Tbcc (ENSMUSG00000036430) #29	Bicral (ENSMUSG00000036568) #30	Rpl7l1 (ENSMUSG00000063888) #31	2310039H08Rik (ENSMUSG00000062619)	Ptcra (ENSMUSG00000036858) #32	Cnpy3 (ENSMUSG00000023973) #33	Gnmt (ENSMUSG00000002769) #35	Pex6 (ENSMUSG00000002763) #36	Ppp2r5d (ENSMUSG00000059409) #37
Ryukyu mouse	MODERN SPECIES	8	Foxp4 (MGP_CAROLIEiJ_G0021714) #8	Mdfi (MGP_CAROLIEiJ_G0021713) #9	Tfeb (MGP_CAROLIEiJ_G0021712) #10	Pgc (MGP_CAROLIEiJ_G0021711) #11	Frs3 (MGP_CAROLIEiJ_G0021710) #12	MGP_CAROLIEiJ_G0021709 #13	MGP_CAROLIEiJ_G0021708 #13	Tomm6 (MGP_CAROLIEiJ_G0021707) #14	Usp49 (MGP_CAROLIEiJ_G0021706) #15	MGP_CAROLIEiJ_G0021705 #16	Med20 (MGP_CAROLIEiJ_G0021704) #16	Bysl (MGP_CAROLIEiJ_G0021703) #17	Ccnd3 (MGP_CAROLIEiJ_G0021702) #18	Taf8 (MGP_CAROLIEiJ_G0021701) #20	AI661453 (MGP_CAROLIEiJ_G0021700) #21	1700001C19Rik (MGP_CAROLIEiJ_G0021699) #22	Guca1a (MGP_CAROLIEiJ_G0021698) #23	MGP_CAROLIEiJ_G0021697 #24	Mrps10 (MGP_CAROLIEiJ_G0021696) #25	MGP_CAROLIEiJ_G0021695	Ubr2 (MGP_CAROLIEiJ_G0021694) #27	Prph2 (MGP_CAROLIEiJ_G0021693) #28	Tbcc (MGP_CAROLIEiJ_G0021692) #29	MGP_CAROLIEiJ_G0021691	Bicral (MGP_CAROLIEiJ_G0021690) #30	Rpl7l1 (MGP_CAROLIEiJ_G0021689) #31	2310039H08Rik (MGP_CAROLIEiJ_G0021688)	Ptcra (MGP_CAROLIEiJ_G0021687) #32	Cnpy3 (MGP_CAROLIEiJ_G0021686) #33	Gnmt (MGP_CAROLIEiJ_G0021685) #35	Pex6 (MGP_CAROLIEiJ_G0021684) #36
Shrew mouse	MODERN SPECIES	9	Foxp4 (MGP_PahariEiJ_G0020704) #8	Mdfi (MGP_PahariEiJ_G0020703) #9	Tfeb (MGP_PahariEiJ_G0020702) #10	Pgc (MGP_PahariEiJ_G0020701) #11	Frs3 (MGP_PahariEiJ_G0020700) #12	MGP_PahariEiJ_G0020699 #13	MGP_PahariEiJ_G0020698 #13	Tomm6 (MGP_PahariEiJ_G0020697) #14	Usp49 (MGP_PahariEiJ_G0020696) #15	MGP_PahariEiJ_G0020695 #16	Med20 (MGP_PahariEiJ_G0020694) #16	Bysl (MGP_PahariEiJ_G0020693) #17	Ccnd3 (MGP_PahariEiJ_G0020692) #18	Taf8 (MGP_PahariEiJ_G0020691) #20	AI661453 (MGP_PahariEiJ_G0020690) #21	MGP_PahariEiJ_G0020689 #22	Guca1a (MGP_PahariEiJ_G0020688) #23	MGP_PahariEiJ_G0020687 #24	Mrps10 (MGP_PahariEiJ_G0020686) #25	MGP_PahariEiJ_G0020685	Ubr2 (MGP_PahariEiJ_G0020684) #27	Prph2 (MGP_PahariEiJ_G0020683) #28	Tbcc (MGP_PahariEiJ_G0020682) #29	MGP_PahariEiJ_G0020681 #30	Rpl7l1 (MGP_PahariEiJ_G0020680) #31	2310039H08Rik (MGP_PahariEiJ_G0020679)	Ptcra (MGP_PahariEiJ_G0020678) #32	Cnpy3 (MGP_PahariEiJ_G0020677) #33	Gnmt (MGP_PahariEiJ_G0020676) #35	Pex6 (MGP_PahariEiJ_G0020675) #36	Ppp2r5d (MGP_PahariEiJ_G0020674) #37
Rat	MODERN SPECIES	19	ENSRNOG00000066209	LOC680955 (ENSRNOG00000040095)	LOC100911489 (ENSRNOG00000067280)	Foxp4 (ENSRNOG00000022804) #8	Mdfi (ENSRNOG00000014987) #9	Tfeb (ENSRNOG00000014666) #10	Pgc (ENSRNOG00000014492) #11	Frs3 (ENSRNOG00000014328) #12	Prickle4 (ENSRNOG00000014180) #13	Usp49 (ENSRNOG00000013866) #15	Med20 (ENSRNOG00000013852) #16	Bysl (ENSRNOG00000049121) #17	Ccnd3 (ENSRNOG00000050258) #18	Taf8 (ENSRNOG00000015249) #20	C9h6orf132 (ENSRNOG00000015297) #21	LOC100912849 (ENSRNOG00000015386) #22	Guca1a (ENSRNOG00000015402) #23	Guca1b (ENSRNOG00000015623) #24	Mrps10 (ENSRNOG00000022609) #25	Trerf1 (ENSRNOG00000022598) #26	Ubr2 (ENSRNOG00000015813) #27	Prph2 (ENSRNOG00000068377) #28	Tbcc (ENSRNOG00000048291) #29	Bicral (ENSRNOG00000016229) #30	Rpl7l1 (ENSRNOG00000016269) #31	LOC681367 (ENSRNOG00000046871)	Ptcra (ENSRNOG00000042581) #32	Cnpy3 (ENSRNOG00000016315) #33	Gnmt (ENSRNOG00000016349) #35	Pex6 (ENSRNOG00000016655) #36	Ppp2r5d (ENSRNOG00000016849) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	504		ENSNGAG00000012918	Foxp4 (ENSNGAG00000019301) #8	Mdfi (ENSNGAG00000019621) #9	Tfeb (ENSNGAG00000000739) #10	Pgc (ENSNGAG00000009141) #11	Frs3 (ENSNGAG00000017744) #12	Prickle4 (ENSNGAG00000006023) #13	Tomm6 (ENSNGAG00000016016) #14	Usp49 (ENSNGAG00000017308) #15	Med20 (ENSNGAG00000001431) #16	Bysl (ENSNGAG00000005496) #17	Ccnd3 (ENSNGAG00000007233) #18	Taf8 (ENSNGAG00000001080) #20	ENSNGAG00000015126	ENSNGAG00000019278 #22	Guca1a (ENSNGAG00000005372) #23	ENSNGAG00000005992 #24	Trerf1 (ENSNGAG00000008949) #26
Lesser Egyptian jerboa	MODERN SPECIES	41	Treml2 (ENSJJAG00000020018) ##7	Trem1 (ENSJJAG00000002311)	Foxp4 (ENSJJAG00000012682) #8	Mdfi (ENSJJAG00000011462) #9	Tfeb (ENSJJAG00000006884) #10	Pgc (ENSJJAG00000020186) #11	Frs3 (ENSJJAG00000016510) #12	ENSJJAG00000009681 #13	Tomm6 (ENSJJAG00000014090) #14	Usp49 (ENSJJAG00000010810) #15	Med20 (ENSJJAG00000023488) #16	ENSJJAG00000023129 #17	Ccnd3 (ENSJJAG00000020109) #18	Taf8 (ENSJJAG00000014681) #20	ENSJJAG00000014868	ENSJJAG00000012922 #22	Guca1a (ENSJJAG00000021759) #23	Guca1b (ENSJJAG00000013876) #24	Mrps10 (ENSJJAG00000009159) #25	Trerf1 (ENSJJAG00000017829) #26	Ubr2 (ENSJJAG00000014743) #27	Prph2 (ENSJJAG00000014637) #28	Tbcc (ENSJJAG00000009303) #29	Bicral (ENSJJAG00000023549) #30	Rpl7l1 (ENSJJAG00000023723) #31	Ptcra (ENSJJAG00000003881) #32	Cnpy3 (ENSJJAG00000006773) #33	ENSJJAG00000001038 #35	Pex6 (ENSJJAG00000005949) #36	Ppp2r5d (ENSJJAG00000011011) #37	Mea1 (ENSJJAG00000022932)
Kangaroo rat	MODERN SPECIES	363	Treml1 (ENSDORG00000002310)	Trem2 (ENSDORG00000002311)	ENSDORG00000012047 ##7	Foxp4 (ENSDORG00000015708) #8	Mdfi (ENSDORG00000015709) #9	ENSDORG00000024734 #10	Pgc (ENSDORG00000007516) #11	Prickle4 (ENSDORG00000001459) #13	ENSDORG00000001463 #14	ENSDORG00000025661 #15	Med20 (ENSDORG00000010967) #16	Bysl (ENSDORG00000010968) #17	Ccnd3 (ENSDORG00000025933) #18	Taf8 (ENSDORG00000012970) #20	ENSDORG00000011144	ENSDORG00000005727 #22	Guca1a (ENSDORG00000023559) #23	Guca1b (ENSDORG00000002076) #24	Mrps10 (ENSDORG00000002081) #25	Trerf1 (ENSDORG00000004758) #26	Ubr2 (ENSDORG00000011936) #27	Prph2 (ENSDORG00000011952) #28	Bicral (ENSDORG00000012173) #30	Rpl7l1 (ENSDORG00000012175) #31	Cnpy3 (ENSDORG00000012177) #33	Gnmt (ENSDORG00000012178) #35	Pex6 (ENSDORG00000012179) #36	Ppp2r5d (ENSDORG00000012182) #37	Mea1 (ENSDORG00000012184)	Klhdc3 (ENSDORG00000012185)	Rrp36 (ENSDORG00000012186)
Lagomorpha	ANCESTRAL SPECIES	2	ENSGT00940000153835.a.a ##7	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060.h #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Rabbit	MODERN SPECIES	3	TREML2 (ENSOCUG00000007268) ##7	ENSOCUG00000011397	ENSOCUG00000029152	ENSOCUG00000033208	MDFI (ENSOCUG00000012322) #9	TFEB (ENSOCUG00000027474) #10	FRS3 (ENSOCUG00000000507) #12	PRICKLE4 (ENSOCUG00000000509) #13	TOMM6 (ENSOCUG00000022642) #14	USP49 (ENSOCUG00000021251) #15	MED20 (ENSOCUG00000017562) #16	ENSOCUG00000017567 #17	CCND3 (ENSOCUG00000017573) #18	TAF8 (ENSOCUG00000009876) #20	C6orf132 (ENSOCUG00000023491) #21	ENSOCUG00000025813 #22	GUCA1A (ENSOCUG00000016325) #23	GUCA1B (ENSOCUG00000024944) #24	ENSOCUG00000038254	MRPS10 (ENSOCUG00000016697) #25	TRERF1 (ENSOCUG00000016703) #26	UBR2 (ENSOCUG00000017960) #27	ENSOCUG00000027455	PRPH2 (ENSOCUG00000017963) #28	ENSOCUG00000022401	ENSOCUG00000017964 #29	BICRAL (ENSOCUG00000013438) #30	ENSOCUG00000003844 #31	CNPY3 (ENSOCUG00000027862) #33	ENSOCUG00000003850 #32	GNMT (ENSOCUG00000003858) #35
Pika	MODERN SPECIES	6647														NFE2L2 (ENSOPRG00000013934)	TAF8 (ENSOPRG00000013945) #20	GUCA1ANB (ENSOPRG00000018852) #22	GUCA1A (ENSOPRG00000013964) #23
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT01100000264839	ENSGT00940000164010	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a #31	ENSGT00940000167232	ENSGT00950000182878.b.b.l #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Artiodactyla	ANCESTRAL SPECIES	15	ENSGT00940000153835.a.b.c.a.b #7	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Suina	ANCESTRAL SPECIES	17	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Pig	MODERN SPECIES	15	ENSSSCG00000001616 ##7	TREM1 (ENSSSCG00000033251)	ENSSSCG00000001618 #7	FOXP4 (ENSSSCG00000001619) #8	MDFI (ENSSSCG00000001620) #9	TFEB (ENSSSCG00000001621) #10	PGC (ENSSSCG00000001625) #11	FRS3 (ENSSSCG00000001624) #12	PRICKLE4 (ENSSSCG00000050940) #13	USP49 (ENSSSCG00000001629) #15	MED20 (ENSSSCG00000038520) #16	BYSL (ENSSSCG00000026752) #17	CCND3 (ENSSSCG00000032284) #18	TAF8 (ENSSSCG00000022224) #20	C6orf132 (ENSSSCG00000036801) #21	GUCA1ANB (ENSSSCG00000059449) #22	GUCA1A (ENSSSCG00000001636) #23	GUCA1B (ENSSSCG00000001637) #24	MRPS10 (ENSSSCG00000001638) #25	TRERF1 (ENSSSCG00000001639) #26	UBR2 (ENSSSCG00000001641) #27	ENSSSCG00000056881	PRPH2 (ENSSSCG00000031628) #28	TBCC (ENSSSCG00000026741) #29	BICRAL (ENSSSCG00000001646) #30	RPL7L1 (ENSSSCG00000026472) #31	ENSSSCG00000040577	PTCRA (ENSSSCG00000001650) #32	CNPY3 (ENSSSCG00000001651) #33	GNMT (ENSSSCG00000033214) #35	PEX6 (ENSSSCG00000001653) #36
Chacoan peccary	MODERN SPECIES	782	TREML2 (ENSCWAG00000004558) ##7	ENSCWAG00000004526	ENSCWAG00000004410	FOXP4 (ENSCWAG00000004349) #8	MDFI (ENSCWAG00000004292) #9	TFEB (ENSCWAG00000004198) #10	PGC (ENSCWAG00000004136) #11	FRS3 (ENSCWAG00000004101) #12	PRICKLE4 (ENSCWAG00000004062) #13	TOMM6 (ENSCWAG00000004039) #14	USP49 (ENSCWAG00000003995) #15	MED20 (ENSCWAG00000003967) #16	BYSL (ENSCWAG00000003935) #17	CCND3 (ENSCWAG00000003820) #18	TAF8 (ENSCWAG00000003752) #20	GUCA1ANB (ENSCWAG00000003728) #22	GUCA1A (ENSCWAG00000003703) #23	GUCA1B (ENSCWAG00000003679) #24	MRPS10 (ENSCWAG00000018307) #25
Artiodactyla_a	ANCESTRAL SPECIES	19	ENSGT00940000153835.a.b.c.a.b #7	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Camelidae	ANCESTRAL SPECIES	13	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.c.a #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045.m #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a #31	ENSGT00940000167232	ENSGT00440000034488	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Arabian camel	MODERN SPECIES	12	NCR2 (ENSCDRG00005016657) #7	ENSCDRG00005016689	FOXP4 (ENSCDRG00005016769) #8	MDFI (ENSCDRG00005017632) #9	TFEB (ENSCDRG00005017674) #10	PGC (ENSCDRG00005017765) #11	FRS3 (ENSCDRG00005017816) #12	PRICKLE4 (ENSCDRG00005017867) #13	ENSCDRG00005017925 #14	USP49 (ENSCDRG00005017949) #15	MED20 (ENSCDRG00005018002) #16	ENSCDRG00005006391	BYSL (ENSCDRG00005006430) #17	CCND3 (ENSCDRG00005006484) #18	TAF8 (ENSCDRG00005006712) #20	GUCA1ANB (ENSCDRG00005006898) #22	GUCA1A (ENSCDRG00005006831) #23	GUCA1B (ENSCDRG00005007146) #24	ENSCDRG00005007198 #25	TRERF1 (ENSCDRG00005007238) #26	UBR2 (ENSCDRG00005007347) #27	PRPH2 (ENSCDRG00005007663) #28	TBCC (ENSCDRG00005007707) #29	BICRAL (ENSCDRG00005007736) #30	RPL7L1 (ENSCDRG00005007818) #31	ENSCDRG00005007853	CNPY3 (ENSCDRG00005008125) #33	GNMT (ENSCDRG00005008180) #35	PEX6 (ENSCDRG00005008247) #36	PPP2R5D (ENSCDRG00005008393) #37	MEA1 (ENSCDRG00005008686)
Artiodactyla_b	ANCESTRAL SPECIES	15	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Pecora	ANCESTRAL SPECIES	21	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Yarkand deer	MODERN SPECIES	30	ENSCHYG00000021643	ENSCHYG00000021679	FOXP4 (ENSCHYG00000021715) #8	MDFI (ENSCHYG00000021941) #9	TFEB (ENSCHYG00000022019) #10	PGC (ENSCHYG00000022185) #11	FRS3 (ENSCHYG00000022265) #12	PRICKLE4 (ENSCHYG00000022333) #13	ENSCHYG00000022418 #14	USP49 (ENSCHYG00000022449) #15	MED20 (ENSCHYG00000022551) #16	BYSL (ENSCHYG00000022603) #17	CCND3 (ENSCHYG00000022707) #18	TAF8 (ENSCHYG00000022865) #20	C6orf132 (ENSCHYG00000023077) #21	GUCA1ANB (ENSCHYG00000023137) #22	GUCA1A (ENSCHYG00000023170) #23	ENSCHYG00000023213 #24	TRERF1 (ENSCHYG00000000229) #26	UBR2 (ENSCHYG00000000408) #27	PRPH2 (ENSCHYG00000000711) #28	TBCC (ENSCHYG00000000724) #29	BICRAL (ENSCHYG00000000738) #30	ENSCHYG00000000787 #31	ENSCHYG00000000813	PTCRA (ENSCHYG00000000824) #32	CNPY3 (ENSCHYG00000000840) #33	GNMT (ENSCHYG00000000864) #35	PEX6 (ENSCHYG00000000888) #36	PPP2R5D (ENSCHYG00000000975) #37	ENSCHYG00000001147
Percora_a	ANCESTRAL SPECIES	12	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Bovidae	ANCESTRAL SPECIES	13	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Bovinae	ANCESTRAL SPECIES	9	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060.r #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Bos	ANCESTRAL SPECIES	17	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d.e #14	ENSGT00940000157997 #15	ENSGT00390000002060.r #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Bos_a	ANCESTRAL SPECIES	11	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d.e #14	ENSGT00940000157997 #15	ENSGT00390000002060.r #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	16	ENSBGRG00000022879	FOXP4 (ENSBGRG00000022828) #8	MDFI (ENSBGRG00000022743) #9	TFEB (ENSBGRG00000022682) #10	PGC (ENSBGRG00000022647) #11	FRS3 (ENSBGRG00000022595) #12	PRICKLE4 (ENSBGRG00000022533) #13	ENSBGRG00000022501 #14	USP49 (ENSBGRG00000022467) #15	MED20 (ENSBGRG00000022427) #16	BYSL (ENSBGRG00000022371) #17	CCND3 (ENSBGRG00000022113) #18	TAF8 (ENSBGRG00000022040) #20	C6orf132 (ENSBGRG00000022013) #21	ENSBGRG00000021988 #22	ENSBGRG00000021973 #22	GUCA1A (ENSBGRG00000021900) #23	GUCA1B (ENSBGRG00000021864) #24	ENSBGRG00000021850	MRPS10 (ENSBGRG00000021770) #25	TRERF1 (ENSBGRG00000021627) #26	UBR2 (ENSBGRG00000021453) #27	PRPH2 (ENSBGRG00000021410) #28	TBCC (ENSBGRG00000021407) #29	BICRAL (ENSBGRG00000021301) #30	ENSBGRG00000021224 #31	ENSBGRG00000021209	ENSBGRG00000021144 #32	CNPY3 (ENSBGRG00000021055) #33	GNMT (ENSBGRG00000021025) #35	PEX6 (ENSBGRG00000020837) #36
Domestic yak	MODERN SPECIES	16	ENSBGRG00000022893	ENSBGRG00000022879	FOXP4 (ENSBGRG00000022828) #8	MDFI (ENSBGRG00000022743) #9	TFEB (ENSBGRG00000022682) #10	PGC (ENSBGRG00000022647) #11	FRS3 (ENSBGRG00000022595) #12	PRICKLE4 (ENSBGRG00000022533) #13	ENSBGRG00000022501 #14	USP49 (ENSBGRG00000022467) #15	MED20 (ENSBGRG00000022427) #16	BYSL (ENSBGRG00000022371) #17	CCND3 (ENSBGRG00000022113) #18	TAF8 (ENSBGRG00000022040) #20	C6orf132 (ENSBGRG00000022013) #21	ENSBGRG00000021988 #22	ENSBGRG00000021973 #22	GUCA1A (ENSBGRG00000021900) #23	GUCA1B (ENSBGRG00000021864) #24	ENSBGRG00000021850	MRPS10 (ENSBGRG00000021770) #25	TRERF1 (ENSBGRG00000021627) #26	UBR2 (ENSBGRG00000021453) #27	PRPH2 (ENSBGRG00000021410) #28	TBCC (ENSBGRG00000021407) #29	BICRAL (ENSBGRG00000021301) #30	ENSBGRG00000021224 #31	ENSBGRG00000021209	ENSBGRG00000021144 #32	CNPY3 (ENSBGRG00000021055) #33	GNMT (ENSBGRG00000021025) #35
Wild yak	MODERN SPECIES	1156													ENSBMUG00000013908 #17	CCND3 (ENSBMUG00000013874) #18	TAF8 (ENSBMUG00000013819) #20	GUCA1ANB (ENSBMUG00000013778) #22	GUCA1A (ENSBMUG00000013768) #23	GUCA1B (ENSBMUG00000013755) #24	MRPS10 (ENSBMUG00000013745) #25	TRERF1 (ENSBMUG00000013691) #26	UBR2 (ENSBMUG00000013552) #27	PRPH2 (ENSBMUG00000013438) #28	TBCC (ENSBMUG00000013422) #29	BICRAL (ENSBMUG00000013399) #30	ENSBMUG00000013358 #31	ENSBMUG00000013347	PTCRA (ENSBMUG00000013333) #32	CNPY3 (ENSBMUG00000013282) #33	GNMT (ENSBMUG00000013269) #35	PEX6 (ENSBMUG00000013236) #36	PPP2R5D (ENSBMUG00000013174) #37
Bos_b	ANCESTRAL SPECIES	8	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d.e #14	ENSGT00940000157997 #15	ENSGT00390000002060.r #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.a.a.a.a.a	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A.a #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Hybrid Bos Indicus	MODERN SPECIES	15	ENSBIXG00005009486 ##7	ENSBIXG00005009467	ENSBIXG00005009449	ENSBIXG00005000498	FOXP4 (ENSBIXG00005009430) #8	MDFI (ENSBIXG00005009374) #9	TFEB (ENSBIXG00005000479) #10	PGC (ENSBIXG00005000442) #11	FRS3 (ENSBIXG00005009263) #12	PRICKLE4 (ENSBIXG00005009243) #13	USP49 (ENSBIXG00005009223) #15	BYSL (ENSBIXG00005000413) #17	CCND3 (ENSBIXG00005006095) #18	TAF8 (ENSBIXG00005009126) #20	C6orf132 (ENSBIXG00005009101) #21	GUCA1ANB (ENSBIXG00005009098) #22	GUCA1A (ENSBIXG00005009093) #23	GUCA1B (ENSBIXG00005009059) #24	MRPS10 (ENSBIXG00005009037) #25	ENSBIXG00005009021	TRERF1 (ENSBIXG00005009007) #26	UBR2 (ENSBIXG00005008939) #27	ENSBIXG00005008847	PRPH2 (ENSBIXG00005008840) #28	TBCC (ENSBIXG00005000284) #29	BICRAL (ENSBIXG00005008820) #30	ENSBIXG00005008804 #31	ENSBIXG00005008792	PTCRA (ENSBIXG00005008784) #32	CNPY3 (ENSBIXG00005008771) #33	GNMT (ENSBIXG00005008752) #35
Cow	MODERN SPECIES	15	TREM1 (ENSBTAG00000017593)	ENSBTAG00000050887	FOXP4 (ENSBTAG00000014211) #8	MDFI (ENSBTAG00000019343) #9	TFEB (ENSBTAG00000012384) #10	PGC (ENSBTAG00000003818) #11	FRS3 (ENSBTAG00000009861) #12	PRICKLE4 (ENSBTAG00000038916) #13	TOMM6 (ENSBTAG00000008977) #14	USP49 (ENSBTAG00000008981) #15	MED20 (ENSBTAG00000010100) #16	BYSL (ENSBTAG00000010101) #17	CCND3 (ENSBTAG00000010106) #18	TAF8 (ENSBTAG00000011339) #20	C23H6orf132 (ENSBTAG00000051116) #21	MGC137036 (ENSBTAG00000012822) #22	GUCA1A (ENSBTAG00000051956) #23	GUCA1B (ENSBTAG00000012439) #24	MRPS10 (ENSBTAG00000015301) #25	ENSBTAG00000053124	TRERF1 (ENSBTAG00000015321) #26	UBR2 (ENSBTAG00000005967) #27	PRPH2 (ENSBTAG00000005971) #28	TBCC (ENSBTAG00000000940) #29	BICRAL (ENSBTAG00000014814) #30	RPL7L1 (ENSBTAG00000018478) #31	ENSBTAG00000052790	PTCRA (ENSBTAG00000017097) #32	CNPY3 (ENSBTAG00000015900) #33	GNMT (ENSBTAG00000051534) #35	ENSBTAG00000051935 #33
American bison	MODERN SPECIES	3345	TREML2 (ENSBBBG00000004296) ##7	ENSBBBG00000017351	ENSBBBG00000017366	FOXP4 (ENSBBBG00000007431) #8	MDFI (ENSBBBG00000017452) #9	TFEB (ENSBBBG00000017522) #10	PGC (ENSBBBG00000004344) #11	FRS3 (ENSBBBG00000017554) #12	PRICKLE4 (ENSBBBG00000007501) #13	TOMM6 (ENSBBBG00000008454) #14	USP49 (ENSBBBG00000017606) #15	MED20 (ENSBBBG00000017618) #16	BYSL (ENSBBBG00000004364) #17	CCND3 (ENSBBBG00000017683) #18	ENSBBBG00000006963	GUCA1ANB (ENSBBBG00000017711) #22	GUCA1A (ENSBBBG00000017728) #23	GUCA1B (ENSBBBG00000017738) #24	MRPS10 (ENSBBBG00000017751) #25	TRERF1 (ENSBBBG00000007621) #26	UBR2 (ENSBBBG00000007799) #27	PRPH2 (ENSBBBG00000017979) #28	TBCC (ENSBBBG00000004425) #29	BICRAL (ENSBBBG00000018018) #30	ENSBBBG00000004435 #31	ENSBBBG00000018041	ENSBBBG00000004438 #32	CNPY3 (ENSBBBG00000018061) #33	GNMT (ENSBBBG00000018085) #35	PEX6 (ENSBBBG00000018126) #36	PPP2R5D (ENSBBBG00000004468) #37
Caprinae	ANCESTRAL SPECIES	16	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Goat	MODERN SPECIES	15	TREM1 (ENSCHIG00000027075)	ENSCHIG00000023956	FOXP4 (ENSCHIG00000007860) #8	MDFI (ENSCHIG00000020376) #9	TFEB (ENSCHIG00000014684) #10	PGC (ENSCHIG00000013333) #11	FRS3 (ENSCHIG00000014434) #12	PRICKLE4 (ENSCHIG00000021416) #13	TOMM6 (ENSCHIG00000013364) #14	USP49 (ENSCHIG00000013872) #15	MED20 (ENSCHIG00000011055) #16	BYSL (ENSCHIG00000017590) #17	CCND3 (ENSCHIG00000026950) #18	TAF8 (ENSCHIG00000018137) #20	C6orf132 (ENSCHIG00000025468) #21	GUCA1ANB (ENSCHIG00000015563) #22	GUCA1A (ENSCHIG00000011263) #23	GUCA1B (ENSCHIG00000013876) #24	MRPS10 (ENSCHIG00000022930) #25	TRERF1 (ENSCHIG00000012508) #26	UBR2 (ENSCHIG00000010493) #27	PRPH2 (ENSCHIG00000017037) #28	TBCC (ENSCHIG00000010738) #29	BICRAL (ENSCHIG00000011817) #30	ENSCHIG00000010307 #31	PTCRA (ENSCHIG00000010829) #32	CNPY3 (ENSCHIG00000015552) #33	GNMT (ENSCHIG00000026364) #35	PEX6 (ENSCHIG00000009174) #36	PPP2R5D (ENSCHIG00000018710) #37	ENSCHIG00000025491
Rambouillet Sheep	MODERN SPECIES	12	TREM2 (ENSOARG00020014664)	ENSOARG00020014811	ENSOARG00020014842	FOXP4 (ENSOARG00020014880) #8	MDFI (ENSOARG00020015035) #9	TFEB (ENSOARG00020015133) #10	PGC (ENSOARG00020015253) #11	FRS3 (ENSOARG00020015378) #12	PRICKLE4 (ENSOARG00020015416) #13	TOMM6 (ENSOARG00020015489) #14	USP49 (ENSOARG00020015534) #15	MED20 (ENSOARG00020015583) #16	BYSL (ENSOARG00020015632) #17	CCND3 (ENSOARG00020015730) #18	TAF8 (ENSOARG00020016014) #20	GUCA1ANB (ENSOARG00020016330) #22	GUCA1B (ENSOARG00020016431) #24	MRPS10 (ENSOARG00020016487) #25	TRERF1 (ENSOARG00020016521) #26	UBR2 (ENSOARG00020016698) #27	PRPH2 (ENSOARG00020017256) #28	TBCC (ENSOARG00020017312) #29	BICRAL (ENSOARG00020017366) #30	ENSOARG00020017506 #31	ENSOARG00020017595	PTCRA (ENSOARG00020017626) #32	PTK7 (ENSOARG00020017682)	CNPY3 (ENSOARG00020018086) #33	GNMT (ENSOARG00020018269) #35	PEX6 (ENSOARG00020018345) #36	PPP2R5D (ENSOARG00020018642) #37
Siberian musk deer	MODERN SPECIES	355	TREML2 (ENSMMSG00000009073) ##7	ENSMMSG00000009113	FOXP4 (ENSMMSG00000009149) #8	MDFI (ENSMMSG00000009206) #9	TFEB (ENSMMSG00000009290) #10	PGC (ENSMMSG00000009351) #11	FRS3 (ENSMMSG00000009397) #12	PRICKLE4 (ENSMMSG00000009426) #13	ENSMMSG00000009479 #14	USP49 (ENSMMSG00000009496) #15	MED20 (ENSMMSG00000009591) #16	BYSL (ENSMMSG00000009619) #17	CCND3 (ENSMMSG00000009679) #18	TAF8 (ENSMMSG00000010017) #20	C6orf132 (ENSMMSG00000010088) #21	ENSMMSG00000010105 #22	GUCA1A (ENSMMSG00000010121) #23	GUCA1B (ENSMMSG00000010149) #24	MRPS10 (ENSMMSG00000010176) #25	TRERF1 (ENSMMSG00000010234) #26	UBR2 (ENSMMSG00000010934) #27	ENSMMSG00000011915	PRPH2 (ENSMMSG00000011927) #28	TBCC (ENSMMSG00000011946) #29	BICRAL (ENSMMSG00000011972) #30	ENSMMSG00000012034 #31	ENSMMSG00000012048	PTCRA (ENSMMSG00000012068) #32	CNPY3 (ENSMMSG00000004545) #33	GNMT (ENSMMSG00000004609) #35	PEX6 (ENSMMSG00000004652) #36
Cetacea	ANCESTRAL SPECIES	7	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a.b.b #31	ENSGT00940000158912.h.a	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045.k #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a.b.b #31	ENSGT00940000158912.h.a	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045.k #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a.b.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045.l #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a.b.b #31	ENSGT00940000167232	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045.k #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.a.b.b #31	ENSGT00940000167232	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Beluga whale	MODERN SPECIES	8	ENSDLEG00000011115	ENSDLEG00000011149	FOXP4 (ENSDLEG00000011171) #8	MDFI (ENSDLEG00000011255) #9	TFEB (ENSDLEG00000011268) #10	PGC (ENSDLEG00000011283) #11	FRS3 (ENSDLEG00000011377) #12	PRICKLE4 (ENSDLEG00000011395) #13	TOMM6 (ENSDLEG00000011453) #14	USP49 (ENSDLEG00000011464) #15	MED20 (ENSDLEG00000011481) #16	BYSL (ENSDLEG00000011493) #17	CCND3 (ENSDLEG00000011516) #18	TAF8 (ENSDLEG00000011540) #20	C6orf132 (ENSDLEG00000011560) #21	GUCA1ANB (ENSDLEG00000011566) #22	GUCA1A (ENSDLEG00000011574) #23	GUCA1B (ENSDLEG00000011600) #24	MRPS10 (ENSDLEG00000011621) #25	TRERF1 (ENSDLEG00000011641) #26	UBR2 (ENSDLEG00000011696) #27	ENSDLEG00000011821 #28	ENSDLEG00000011831 #28	TBCC (ENSDLEG00000011847) #29	BICRAL (ENSDLEG00000011860) #30	ENSDLEG00000011884 #31	ENSDLEG00000011898	CNPY3 (ENSDLEG00000011909) #33	GNMT (ENSDLEG00000011920) #35	PEX6 (ENSDLEG00000011928) #36	PPP2R5D (ENSDLEG00000012027) #37
Narwhal	MODERN SPECIES	310	TREML2 (ENSMMNG00015012981) ##7	ENSMMNG00015012963	FOXP4 (ENSMMNG00015012909) #8	MDFI (ENSMMNG00015012881) #9	TFEB (ENSMMNG00015012845) #10	PGC (ENSMMNG00015012820) #11	FRS3 (ENSMMNG00015012812) #12	PRICKLE4 (ENSMMNG00015012804) #13	TOMM6 (ENSMMNG00015012791) #14	USP49 (ENSMMNG00015012776) #15	MED20 (ENSMMNG00015012762) #16	BYSL (ENSMMNG00015012752) #17	CCND3 (ENSMMNG00015012721) #18	TAF8 (ENSMMNG00015012689) #20	C6orf132 (ENSMMNG00015012670) #21	GUCA1ANB (ENSMMNG00015012656) #22	GUCA1A (ENSMMNG00015012644) #23	GUCA1B (ENSMMNG00015012632) #24	MRPS10 (ENSMMNG00015012623) #25	TRERF1 (ENSMMNG00015012602) #26	UBR2 (ENSMMNG00015012496) #27	PRPH2 (ENSMMNG00015012414) #28	TBCC (ENSMMNG00015012403) #29	BICRAL (ENSMMNG00015012360) #30	ENSMMNG00015012328 #31	ENSMMNG00015012315	CNPY3 (ENSMMNG00015012247) #33	GNMT (ENSMMNG00015012227) #35	PEX6 (ENSMMNG00015012200) #36	PPP2R5D (ENSMMNG00015012154) #37	MEA1 (ENSMMNG00015012123)
Vaquita	MODERN SPECIES	2	ENSPSNG00000010488	ENSPSNG00000010602	FOXP4 (ENSPSNG00000010759) #8	MDFI (ENSPSNG00000011866) #9	TFEB (ENSPSNG00000011981) #10	PGC (ENSPSNG00000012135) #11	FRS3 (ENSPSNG00000012245) #12	PRICKLE4 (ENSPSNG00000012338) #13	TOMM6 (ENSPSNG00000012457) #14	USP49 (ENSPSNG00000012507) #15	MED20 (ENSPSNG00000012672) #16	BYSL (ENSPSNG00000012738) #17	CCND3 (ENSPSNG00000012800) #18	TAF8 (ENSPSNG00000013036) #20	C6orf132 (ENSPSNG00000013160) #21	GUCA1ANB (ENSPSNG00000013195) #22	GUCA1A (ENSPSNG00000013237) #23	GUCA1B (ENSPSNG00000013308) #24	ENSPSNG00000013382 #25	TRERF1 (ENSPSNG00000013444) #26	UBR2 (ENSPSNG00000013703) #27	PRPH2 (ENSPSNG00000013919) #28	TBCC (ENSPSNG00000013993) #29	BICRAL (ENSPSNG00000014055) #30	ENSPSNG00000014219 #31	CNPY3 (ENSPSNG00000014861) #33	GNMT (ENSPSNG00000015036) #35	PEX6 (ENSPSNG00000015144) #36	PPP2R5D (ENSPSNG00000015286) #37	MEA1 (ENSPSNG00000015569)	KLHDC3 (ENSPSNG00000015669)
Dolphin	MODERN SPECIES	2478														ENSTTRG00000014044	ENSTTRG00000014051	GUCA1ANB (ENSTTRG00000014054) #22	GUCA1A (ENSTTRG00000014056) #23	GUCA1B (ENSTTRG00000014060) #24	MRPS10 (ENSTTRG00000014063) #25	TRERF1 (ENSTTRG00000014065) #26
Sperm whale	MODERN SPECIES	9	APOBEC2 (ENSPCTG00005021351)	OARD1 (ENSPCTG00005021366)	NFYA (ENSPCTG00005021420)	ENSPCTG00005004346	TREML1 (ENSPCTG00005004442)	TREM2 (ENSPCTG00005004514)	TREML2 (ENSPCTG00005004549) ##7	ENSPCTG00005004578	ENSPCTG00005004605	FOXP4 (ENSPCTG00005004666) #8	MED20 (ENSPCTG00005004839) #16	BYSL (ENSPCTG00005004855) #17	CCND3 (ENSPCTG00005004894) #18	TAF8 (ENSPCTG00005005090) #20	C6orf132 (ENSPCTG00005005133) #21	GUCA1ANB (ENSPCTG00005005159) #22	GUCA1A (ENSPCTG00005005175) #23	GUCA1B (ENSPCTG00005005202) #24	ENSPCTG00005005220 #25	ENSPCTG00005005242 #26	UBR2 (ENSPCTG00005005313) #27	PRPH2 (ENSPCTG00005005569) #28	TBCC (ENSPCTG00005005588) #29	BICRAL (ENSPCTG00005005622) #30	ENSPCTG00005005648 #31	ENSPCTG00005005675	ENSPCTG00005005732	SRF (ENSPCTG00005005770)	SLC22A7 (ENSPCTG00005005815)	CRIP3 (ENSPCTG00005005915)	ZNF318 (ENSPCTG00005006018)
Blue whale	MODERN SPECIES	2	ENSBMSG00010010389	FOXP4 (ENSBMSG00010010356) #8	MDFI (ENSBMSG00010010338) #9	TFEB (ENSBMSG00010010299) #10	PGC (ENSBMSG00010010276) #11	FRS3 (ENSBMSG00010010261) #12	PRICKLE4 (ENSBMSG00010010242) #13	ENSBMSG00010010229 #14	USP49 (ENSBMSG00010010213) #15	ENSBMSG00010010206	ENSBMSG00010010194 #16	BYSL (ENSBMSG00010010176) #17	CCND3 (ENSBMSG00010010130) #18	TAF8 (ENSBMSG00010010093) #20	C6orf132 (ENSBMSG00010010068) #21	GUCA1ANB (ENSBMSG00010010047) #22	GUCA1A (ENSBMSG00010010030) #23	ENSBMSG00010010003 #24	TRERF1 (ENSBMSG00010009880) #26	ENSBMSG00010009836	ENSBMSG00010009818 #27	ENSBMSG00010009795 #27	ENSBMSG00010009780	PRPH2 (ENSBMSG00010009768) #28	TBCC (ENSBMSG00010009756) #29	BICRAL (ENSBMSG00010009740) #30	ENSBMSG00010009726 #31	ENSBMSG00010009715	ENSBMSG00010009706	PTCRA (ENSBMSG00010009694) #32	CNPY3 (ENSBMSG00010009680) #33
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT01100000264839	ENSGT00940000164010	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.l #31	ENSGT00940000167232	ENSGT00950000182878.b.b.k.b #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Carnivora	ANCESTRAL SPECIES	4	ENSGT00940000153835.a.b.c.a.b #7	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.l #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Caniformia	ANCESTRAL SPECIES	3	ENSGT00940000153835.a.b.c.a.b #7	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.l #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00940000153835.a.b.c.a.b #7	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.l #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Ursidae	ANCESTRAL SPECIES	35	ENSGT00940000153835.a.b.c.a.b #7	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607.d #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303.b #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.l #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Ursus	ANCESTRAL SPECIES	28	ENSGT00470000042299	ENSGT00940000153835.a.b.c.b ##7	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00390000014226 #22	ENSGT00940000160607.d #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a.y #27	ENSGT00940000157303.b #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.l #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Polar bear	MODERN SPECIES	174	TREM1 (ENSUMAG00000012198)	ENSUMAG00000012194 ##7	ENSUMAG00000012179	FOXP4 (ENSUMAG00000012042) #8	MDFI (ENSUMAG00000012028) #9	TFEB (ENSUMAG00000012024) #10	PGC (ENSUMAG00000012014) #11	FRS3 (ENSUMAG00000012003) #12	ENSUMAG00000011999 #13	ENSUMAG00000012000 #14	USP49 (ENSUMAG00000011995) #15	MED20 (ENSUMAG00000011993) #16	BYSL (ENSUMAG00000011988) #17	CCND3 (ENSUMAG00000011981) #18	TAF8 (ENSUMAG00000011975) #20	GUCA1ANB (ENSUMAG00000011972) #22	GUCA1A (ENSUMAG00000011969) #23	GUCA1B (ENSUMAG00000011967) #24	MRPS10 (ENSUMAG00000011959) #25	TRERF1 (ENSUMAG00000011953) #26	UBR2 (ENSUMAG00000009456) #27	PRPH2 (ENSUMAG00000009271) #28	TBCC (ENSUMAG00000009247) #29	BICRAL (ENSUMAG00000009236) #30	RPL7L1 (ENSUMAG00000009231) #31	ENSUMAG00000009228 #32	CNPY3 (ENSUMAG00000009221) #33	GNMT (ENSUMAG00000009217) #35	PEX6 (ENSUMAG00000009161) #36	MEA1 (ENSUMAG00000009134)	PPP2R5D (ENSUMAG00000008781) #37
American black bear	MODERN SPECIES	989												MED20 (ENSUAMG00000027837) #16	BYSL (ENSUAMG00000027838) #17	CCND3 (ENSUAMG00000027839) #18	TAF8 (ENSUAMG00000027841) #20	GUCA1ANB (ENSUAMG00000027844) #22	GUCA1A (ENSUAMG00000027845) #23	ENSUAMG00000027846 #25
Giant Panda	MODERN SPECIES	10	ENSAMEG00000013167 #7	ENSAMEG00000024544	FOXP4 (ENSAMEG00000013127) #8	MDFI (ENSAMEG00000026981) #9	TFEB (ENSAMEG00000013103) #10	PGC (ENSAMEG00000013081) #11	FRS3 (ENSAMEG00000013077) #12	PRICKLE4 (ENSAMEG00000013074) #13	TOMM6 (ENSAMEG00000013073) #14	USP49 (ENSAMEG00000013061) #15	MED20 (ENSAMEG00000013047) #16	BYSL (ENSAMEG00000013033) #17	CCND3 (ENSAMEG00000013018) #18	TAF8 (ENSAMEG00000012998) #20	C6orf132 (ENSAMEG00000026542) #21	GUCA1ANB (ENSAMEG00000030399) #22	GUCA1B (ENSAMEG00000012942) #24	MRPS10 (ENSAMEG00000012932) #25	TRERF1 (ENSAMEG00000023645) #26	UBR2 (ENSAMEG00000012828) #27	PRPH2 (ENSAMEG00000012814) #28	TBCC (ENSAMEG00000019324) #29	BICRAL (ENSAMEG00000012807) #30	RPL7L1 (ENSAMEG00000012791) #31	PTCRA (ENSAMEG00000027109) #32	CNPY3 (ENSAMEG00000012772) #33	GNMT (ENSAMEG00000012753) #35	ENSAMEG00000012714 #36	PPP2R5D (ENSAMEG00000012663) #37	MEA1 (ENSAMEG00000012655)	KLHDC3 (ENSAMEG00000012631)
Mustelinae	ANCESTRAL SPECIES	8	ENSGT00940000153835.a.b.c.a.b #7	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.l #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
American mink	MODERN SPECIES	50	ENSNVIG00000013243 #7	ENSNVIG00000013230	FOXP4 (ENSNVIG00000012871) #8	MDFI (ENSNVIG00000012832) #9	TFEB (ENSNVIG00000012765) #10	PGC (ENSNVIG00000012741) #11	FRS3 (ENSNVIG00000012724) #12	PRICKLE4 (ENSNVIG00000012701) #13	TOM6 (ENSNVIG00000012692) #14	USP49 (ENSNVIG00000012647) #15	MED20 (ENSNVIG00000012638) #16	BYST (ENSNVIG00000012629) #17	CCND3 (ENSNVIG00000012598) #18	TAF8 (ENSNVIG00000012563) #20	C6orf132 (ENSNVIG00000012546) #21	GUCA1ANB (ENSNVIG00000012541) #22	GUCA1A (ENSNVIG00000012518) #23	GUCA1B (ENSNVIG00000012511) #24	MRPS10 (ENSNVIG00000012504) #25	TRERF1 (ENSNVIG00000012462) #26	UBR2 (ENSNVIG00000012316) #27	PRPH2 (ENSNVIG00000012308) #28	TBCC (ENSNVIG00000012305) #29	K0240 (ENSNVIG00000012249) #30	RPL7L1 (ENSNVIG00000012232) #31	ENSNVIG00000012223	ENSNVIG00000012211 #32	CNPY3 (ENSNVIG00000012190) #33	ENSNVIG00000012179 #35	PEX6 (ENSNVIG00000012146) #36	PPP2R5D (ENSNVIG00000012005) #37
Canidae	ANCESTRAL SPECIES	6	ENSGT00940000153835.a.a ##7	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700.v #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.l.a #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Red fox	MODERN SPECIES	7	TREML2 (ENSVVUG00000026654) ##7	TREM1 (ENSVVUG00000026657)	ENSVVUG00000026658 #7	FOXP4 (ENSVVUG00000026661) #8	MDFI (ENSVVUG00000026662) #9	TFEB (ENSVVUG00000026665) #10	FRS3 (ENSVVUG00000026666) #12	ENSVVUG00000026668 #13	TOMM6 (ENSVVUG00000026670) #14	USP49 (ENSVVUG00000026671) #15	MED20 (ENSVVUG00000026676) #16	BYSL (ENSVVUG00000026680) #17	CCND3 (ENSVVUG00000026685) #18	TAF8 (ENSVVUG00000026691) #20	C6orf132 (ENSVVUG00000026693) #21	GUCA1ANB (ENSVVUG00000026696) #22	GUCA1A (ENSVVUG00000026699) #23	GUCA1B (ENSVVUG00000026700) #24	MRPS10 (ENSVVUG00000026701) #25	TRERF1 (ENSVVUG00000026706) #26	ENSVVUG00000026735	UBR2 (ENSVVUG00000026828) #27	PRPH2 (ENSVVUG00000027511) #28	TBCC (ENSVVUG00000027515) #29	BICRAL (ENSVVUG00000027518) #30	ENSVVUG00000027534 #31	PTCRA (ENSVVUG00000027538) #32	CNPY3 (ENSVVUG00000027539) #33	ENSVVUG00000027541 #35	GNMT (ENSVVUG00000027542) #35	PEX6 (ENSVVUG00000027551) #36
Canis_lupus	ANCESTRAL SPECIES	11	ENSGT00940000153835.a.a ##7	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700.v #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045.p #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.l.a #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Dog	MODERN SPECIES	3	TREML2 (ENSCAFG00845015271) ##7	TREM1 (ENSCAFG00845015313)	ENSCAFG00845015357 #7	FOXP4 (ENSCAFG00845015420) #8	MDFI (ENSCAFG00845015516) #9	TFEB (ENSCAFG00845015601) #10	FRS3 (ENSCAFG00845015678) #12	PRICKLE4 (ENSCAFG00845015733) #13	TOMM6 (ENSCAFG00845015815) #14	USP49 (ENSCAFG00845015856) #15	MED20 (ENSCAFG00845015923) #16	BYSL (ENSCAFG00845015977) #17	CCND3 (ENSCAFG00845016058) #18	TAF8 (ENSCAFG00845016250) #20	C6orf132 (ENSCAFG00845016343) #21	GUCA1ANB (ENSCAFG00845005438) #22	GUCA1A (ENSCAFG00845005448) #23	GUCA1B (ENSCAFG00845005466) #24	TRERF1 (ENSCAFG00845005596) #26	UBR2 (ENSCAFG00845005887) #27	PRPH2 (ENSCAFG00845006562) #28	TBCC (ENSCAFG00845006611) #29	BICRAL (ENSCAFG00845006656) #30	RPL7L1 (ENSCAFG00845006742) #31	ENSCAFG00845006833 #32	CNPY3 (ENSCAFG00845006859) #33	GNMT (ENSCAFG00845006923) #35	PEX6 (ENSCAFG00845006987) #36	PPP2R5D (ENSCAFG00845007060) #37	MEA1 (ENSCAFG00845007145)	KLHDC3 (ENSCAFG00845007294)
Dingo	MODERN SPECIES	276	ENSCAFG00020008339 ##7	TREML2 (ENSCAFG00020008359) ##7	TREM1 (ENSCAFG00020008363)	ENSCAFG00020008370 #8	MDFI (ENSCAFG00020008376) #9	TFEB (ENSCAFG00020008386) #10	FRS3 (ENSCAFG00020008399) #12	PRICKLE4 (ENSCAFG00020008411) #13	TOMM6 (ENSCAFG00020008414) #14	USP49 (ENSCAFG00020008418) #15	MED20 (ENSCAFG00020008424) #16	BYSL (ENSCAFG00020008426) #17	CCND3 (ENSCAFG00020008430) #18	TAF8 (ENSCAFG00020008435) #20	C6orf132 (ENSCAFG00020008459) #21	GUCA1ANB (ENSCAFG00020008462) #22	GUCA1A (ENSCAFG00020008468) #23	GUCA1B (ENSCAFG00020008471) #24	ENSCAFG00020008480 #25	TRERF1 (ENSCAFG00020008499) #26	UBR2 (ENSCAFG00020008679) #27	PRPH2 (ENSCAFG00020010555) #28	TBCC (ENSCAFG00020010562) #29	BICRAL (ENSCAFG00020010567) #30	RPL7L1 (ENSCAFG00020010586) #31	PTCRA (ENSCAFG00020010601) #32	CNPY3 (ENSCAFG00020010604) #33	GNMT (ENSCAFG00020010607) #35	PEX6 (ENSCAFG00020010623) #36	PPP2R5D (ENSCAFG00020010678) #37	MEA1 (ENSCAFG00020011037)
Felidae	ANCESTRAL SPECIES	5	ENSGT00940000153835.a.b.c.a.b #7	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.l #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927.m
Panthera	ANCESTRAL SPECIES	7	ENSGT00940000153835.a.b.c.a.b #7	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.l.c #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927.m
Tiger	MODERN SPECIES	220	TREML2 (ENSPTIG00000018540) ##7	TREM1 (ENSPTIG00000017514)	NCR2 (ENSPTIG00000016573) #7	FOXP4 (ENSPTIG00000009478) #8	MDFI (ENSPTIG00000007258) #9	TFEB (ENSPTIG00000018959) #10	PGC (ENSPTIG00000017140) #11	FRS3 (ENSPTIG00000016828) #12	PRICKLE4 (ENSPTIG00000013733) #13	TOMM6 (ENSPTIG00000013327) #14	USP49 (ENSPTIG00000011351) #15	MED20 (ENSPTIG00000010826) #16	BYSL (ENSPTIG00000010244) #17	CCND3 (ENSPTIG00000007566) #18	TAF8 (ENSPTIG00000001301) #20	GUCA1ANB (ENSPTIG00000020348) #22	GUCA1A (ENSPTIG00000019090) #23	GUCA1B (ENSPTIG00000018931) #24	MRPS10 (ENSPTIG00000018454) #25	TRERF1 (ENSPTIG00000014632) #26	UBR2 (ENSPTIG00000009663) #27	PRPH2 (ENSPTIG00000008614) #28	TBCC (ENSPTIG00000000245) #29	BICRAL (ENSPTIG00000007798) #30	RPL7L1 (ENSPTIG00000005509) #31	PTCRA (ENSPTIG00000021904) #32	CNPY3 (ENSPTIG00000021789) #33	GNMT (ENSPTIG00000021496) #35	PEX6 (ENSPTIG00000020580) #36	PPP2R5D (ENSPTIG00000014329) #37	MEA1 (ENSPTIG00000013379)
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00940000153835.a.b.c.a.b #7	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.l.c #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927.m
leopard	MODERN SPECIES	30	ENSPPRG00000003273 #7	FOXP4 (ENSPPRG00000002467) #8	MDFI (ENSPPRG00000022722) #9	TFEB (ENSPPRG00000023683) #10	PGC (ENSPPRG00000015974) #11	FRS3 (ENSPPRG00000013960) #12	TOMM6 (ENSPPRG00000013563) #14	PRICKLE4 (ENSPPRG00000011657) #13	ENSPPRG00000011172	USP49 (ENSPPRG00000011049) #15	MED20 (ENSPPRG00000010645) #16	BYSL (ENSPPRG00000010500) #17	CCND3 (ENSPPRG00000010131) #18	TAF8 (ENSPPRG00000009335) #20	C6orf132 (ENSPPRG00000008556) #21	GUCA1ANB (ENSPPRG00000007957) #22	GUCA1A (ENSPPRG00000007667) #23	GUCA1B (ENSPPRG00000006615) #24	MRPS10 (ENSPPRG00000006267) #25	TRERF1 (ENSPPRG00000006118) #26	UBR2 (ENSPPRG00000003420) #27	PRPH2 (ENSPPRG00000001023) #28	TBCC (ENSPPRG00000015620) #29	BICRAL (ENSPPRG00000000850) #30	ENSPPRG00000000595 #31	PTCRA (ENSPPRG00000023115) #32	CNPY3 (ENSPPRG00000023529) #33	GNMT (ENSPPRG00000023762) #35	PEX6 (ENSPPRG00000024681) #36	PPP2R5D (ENSPPRG00000024805) #37	ENSPPRG00000017337
Cat	MODERN SPECIES	236	NCR2 (ENSFCAG00000011518) #7	ENSFCAG00000049466	FOXP4 (ENSFCAG00000011519) #8	MDFI (ENSFCAG00000011520) #9	TFEB (ENSFCAG00000011521) #10	PGC (ENSFCAG00000014737) #11	FRS3 (ENSFCAG00000014739) #12	PRICKLE4 (ENSFCAG00000023605) #13	TOMM6 (ENSFCAG00000038846) #14	USP49 (ENSFCAG00000022369) #15	MED20 (ENSFCAG00000027790) #16	BYSL (ENSFCAG00000026154) #17	CCND3 (ENSFCAG00000036644) #18	TAF8 (ENSFCAG00000041845) #20	CB2H6orf132 (ENSFCAG00000046589) #21	GUCA1ANB (ENSFCAG00000018880) #22	GUCA1A (ENSFCAG00000013623) #23	GUCA1B (ENSFCAG00000042031) #24	MRPS10 (ENSFCAG00000040557) #25	TRERF1 (ENSFCAG00000011210) #26	UBR2 (ENSFCAG00000004141) #27	PRPH2 (ENSFCAG00000004144) #28	TBCC (ENSFCAG00000004145) #29	BICRAL (ENSFCAG00000029362) #30	RPL7L1 (ENSFCAG00000009707) #31	PTCRA (ENSFCAG00000009709) #32	CNPY3 (ENSFCAG00000009710) #33	GNMT (ENSFCAG00000009711) #35	PEX6 (ENSFCAG00000009712) #36	PPP2R5D (ENSFCAG00000009713) #37	ENSFCAG00000031337
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT01100000264839	ENSGT00940000164010	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Equus	ANCESTRAL SPECIES	10	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.b #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Donkey	MODERN SPECIES	28	ENSEASG00005027980 #7	ENSEASG00005003011	FOXP4 (ENSEASG00005003018) #8	MDFI (ENSEASG00005003031) #9	TFEB (ENSEASG00005003034) #10	ENSEASG00005003040	FRS3 (ENSEASG00005003044) #12	PRICKLE4 (ENSEASG00005003047) #13	ENSEASG00005038459 #14	USP49 (ENSEASG00005037948) #15	MED20 (ENSEASG00005003058) #16	BYSL (ENSEASG00005003059) #17	CCND3 (ENSEASG00005003061) #18	TAF8 (ENSEASG00005003063) #20	C6orf132 (ENSEASG00005036376) #21	GUCA1ANB (ENSEASG00005032539) #22	GUCA1A (ENSEASG00005024726) #23	GUCA1B (ENSEASG00005003070) #24	MRPS10 (ENSEASG00005003071) #25	TRERF1 (ENSEASG00005003074) #26	UBR2 (ENSEASG00005003079) #27	PRPH2 (ENSEASG00005003091) #28	TBCC (ENSEASG00005029087) #29	BICRAL (ENSEASG00005003101) #30	RPL7L1 (ENSEASG00005003108) #31	ENSEASG00005037308 #32	CNPY3 (ENSEASG00005003119) #33	GNMT (ENSEASG00005003124) #35	PEX6 (ENSEASG00005003130) #36	PPP2R5D (ENSEASG00005003140) #37	MEA1 (ENSEASG00005034765)
Horse	MODERN SPECIES	12	ENSECAG00000035119 ##7	NCR2 (ENSECAG00000018907) #7	ENSECAG00000030508	FOXP4 (ENSECAG00000000572) #8	MDFI (ENSECAG00000014590) #9	TFEB (ENSECAG00000019762) #10	ENSECAG00000015065	FRS3 (ENSECAG00000015081) #12	USP49 (ENSECAG00000018640) #15	PRICKLE4 (ENSECAG00000017961) #13	MED20 (ENSECAG00000020149) #16	BYSL (ENSECAG00000021260) #17	CCND3 (ENSECAG00000023862) #18	TAF8 (ENSECAG00000024276) #20	C6orf132 (ENSECAG00000034930) #21	ENSECAG00000002139 #22	GUCA1A (ENSECAG00000009745) #23	GUCA1B (ENSECAG00000038639) #24	MRPS10 (ENSECAG00000015274) #25	TRERF1 (ENSECAG00000016971) #26	UBR2 (ENSECAG00000020598) #27	ENSECAG00000058844	ENSECAG00000056989	ENSECAG00000050598	PRPH2 (ENSECAG00000017128) #28	TBCC (ENSECAG00000053303) #29	BICRAL (ENSECAG00000020500) #30	RPL7L1 (ENSECAG00000003113) #31	ENSECAG00000010795 #32	CNPY3 (ENSECAG00000042811) #33	GNMT (ENSECAG00000017768) #35
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT01100000264839	ENSGT00940000164010	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.k.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00940000153835.a.a ##7	ENSGT01030000234811	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.d #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b.l #31	ENSGT00950000182878.b.b.k.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00530000063615.a	ENSGT00390000006845 #35
Greater horseshoe bat	MODERN SPECIES	21	ENSRFEG00010001833	ENSRFEG00010001867	FOXP4 (ENSRFEG00010001882) #8	MDFI (ENSRFEG00010001923) #9	TFEB (ENSRFEG00010001952) #10	PGC (ENSRFEG00010002003) #11	FRS3 (ENSRFEG00010002055) #12	PRICKLE4 (ENSRFEG00010002092) #13	TOMM6 (ENSRFEG00010002125) #14	USP49 (ENSRFEG00010002146) #15	MED20 (ENSRFEG00010002176) #16	BYSL (ENSRFEG00010002195) #17	CCND3 (ENSRFEG00010002230) #18	TAF8 (ENSRFEG00010002286) #20	C6orf132 (ENSRFEG00010002339) #21	GUCA1ANB (ENSRFEG00010002357) #22	GUCA1A (ENSRFEG00010002370) #23	GUCA1B (ENSRFEG00010002396) #24	MRPS10 (ENSRFEG00010002427) #25	TRERF1 (ENSRFEG00010002466) #26	UBR2 (ENSRFEG00010002543) #27	PRPH2 (ENSRFEG00010002622) #28	TBCC (ENSRFEG00010002655) #29	BICRAL (ENSRFEG00010002673) #30	ENSRFEG00010002700 #31	ENSRFEG00010002719	ENSRFEG00010002736 #32	CNPY3 (ENSRFEG00010002746) #33	ENSRFEG00010002775	GNMT (ENSRFEG00010002785) #35	PEX6 (ENSRFEG00010002811) #36
Megabat	MODERN SPECIES	6511		FOXP4 (ENSPVAG00000007573) #8	MDFI (ENSPVAG00000007579) #9	TFEB (ENSPVAG00000007581) #10	PGC (ENSPVAG00000007586) #11	FRS3 (ENSPVAG00000007592) #12	PRICKLE4 (ENSPVAG00000007594) #13	TOMM6 (ENSPVAG00000007598) #14	USP49 (ENSPVAG00000007599) #15	MED20 (ENSPVAG00000007601) #16	BYSL (ENSPVAG00000007606) #17	CCND3 (ENSPVAG00000007610) #18	TAF8 (ENSPVAG00000007614) #20	ENSPVAG00000007617	ENSPVAG00000007619	GUCA1ANB (ENSPVAG00000007620) #22	GUCA1A (ENSPVAG00000007621) #23	MRPS10 (ENSPVAG00000007624) #25	TRERF1 (ENSPVAG00000007626) #26
Atlantogenata	ANCESTRAL SPECIES	3	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Afrotheria	ANCESTRAL SPECIES	24	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000164010	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Afrotheria_a	ANCESTRAL SPECIES	23	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000164010	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Elephant	MODERN SPECIES	1	ENSLAFG00000032071 ##7	ENSLAFG00000002636 #7	FOXP4 (ENSLAFG00000022762) #8	MDFI (ENSLAFG00000031523) #9	TFEB (ENSLAFG00000003059) #10	PGC (ENSLAFG00000017145) #11	FRS3 (ENSLAFG00000017154) #12	PRICKLE4 (ENSLAFG00000017160) #13	TOMM6 (ENSLAFG00000020886) #14	USP49 (ENSLAFG00000017166) #15	MED20 (ENSLAFG00000008885) #16	BYSL (ENSLAFG00000015418) #17	CCND3 (ENSLAFG00000023148) #18	TAF8 (ENSLAFG00000010601) #20	ENSLAFG00000000942	GUCA1ANB (ENSLAFG00000020783) #22	GUCA1A (ENSLAFG00000008087) #23	GUCA1B (ENSLAFG00000000468) #24	MRPS10 (ENSLAFG00000007822) #25	TRERF1 (ENSLAFG00000007825) #26	UBR2 (ENSLAFG00000014978) #27	PRPH2 (ENSLAFG00000015002) #28	TBCC (ENSLAFG00000006994) #29	BICRAL (ENSLAFG00000013839) #30	RPL7L1 (ENSLAFG00000013854) #31	ENSLAFG00000021529	PTCRA (ENSLAFG00000008710) #32	CNPY3 (ENSLAFG00000013858) #33	GNMT (ENSLAFG00000013861) #35	PEX6 (ENSLAFG00000013864) #36	PPP2R5D (ENSLAFG00000013874) #37
Hyrax	MODERN SPECIES	9127														TAF8 (ENSPCAG00000014570) #20	ENSPCAG00000014611	GUCA1ANB (ENSPCAG00000014638) #22
Xenarthra	ANCESTRAL SPECIES	2	ENSGT00940000153835.a.b.c.a.b #7	ENSGT00680000101580	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376 #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00940000167232	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Armadillo	MODERN SPECIES	1977	ENSDNOG00000049043	FOXP4 (ENSDNOG00000048023) #8	MDFI (ENSDNOG00000009771) #9	TFEB (ENSDNOG00000042176) #10	PGC (ENSDNOG00000033789) #11	FRS3 (ENSDNOG00000015972) #12	PRICKLE4 (ENSDNOG00000015976) #13	TOMM6 (ENSDNOG00000025602) #14	USP49 (ENSDNOG00000045633) #15	ENSDNOG00000046911	ENSDNOG00000016666 #16	BYSL (ENSDNOG00000016670) #17	CCND3 (ENSDNOG00000032518) #18	TAF8 (ENSDNOG00000002853) #20	C6orf132 (ENSDNOG00000043925) #21	ENSDNOG00000049672 #22	GUCA1A (ENSDNOG00000034168) #23	GUCA1B (ENSDNOG00000014835) #24	ENSDNOG00000046262 #25
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00470000042299	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000164965	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.s.a #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927	ENSGT00940000157952
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000153835.a.b.b #7	ENSGT00940000158700 #8	ENSGT00940000160187 #9	ENSGT00940000159691 #10	ENSGT00940000160626 #11	ENSGT00940000164965	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.s.a #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00390000009045 #25	ENSGT00940000160303.b #26	ENSGT00950000183075.a.a.a.a #27	ENSGT00940000157303 #28	ENSGT00940000162058 #29	ENSGT00940000159766 #30	ENSGT00950000182878.b.b #31	ENSGT01020000231049	ENSGT01030000235681	ENSGT00390000007712 #32	ENSGT00390000014072.A #33	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Diprotodontia	ANCESTRAL SPECIES	105						ENSGT00940000164965	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.s.a #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23
Diprotodontia_a	ANCESTRAL SPECIES	97						ENSGT00940000164965	ENSGT00940000159495 #12	ENSGT00940000161789 #13	ENSGT00390000002376.s.a #14	ENSGT00940000157997 #15	ENSGT00390000002060 #16	ENSGT00390000007241 #17	ENSGT00940000160743 #18	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23
koala	MODERN SPECIES	395							FRS3 (ENSPCIG00000025895) #12	ENSPCIG00000025894 #13	ENSPCIG00000025893 #14	USP49 (ENSPCIG00000025892) #15	MED20 (ENSPCIG00000025891) #16	BYSL (ENSPCIG00000025889) #17	CCND3 (ENSPCIG00000025888) #18	TAF8 (ENSPCIG00000025887) #20	ENSPCIG00000031965 #21	ENSPCIG00000032038 #22	GUCA1A (ENSPCIG00000025884) #23	ENSPCIG00000034190	ENSPCIG00000025879
Common wonbat	MODERN SPECIES	1061					ENSVURG00010008545	FRS3 (ENSVURG00010008531) #12	ENSVURG00010008525	ENSVURG00010008515 #13	ENSVURG00010008501 #14	USP49 (ENSVURG00010008495) #15	MED20 (ENSVURG00010008477) #16	BYSL (ENSVURG00010008463) #17	CCND3 (ENSVURG00010008408) #18	TAF8 (ENSVURG00010008375) #20	C6orf132 (ENSVURG00010008348) #21	ENSVURG00010008343 #22	ENSVURG00010008062	ENSVURG00010008057	ENSVURG00010006756	ENSVURG00010006691	ENSVURG00010006671	MRPS10 (ENSVURG00010006649) #25	TRERF1 (ENSVURG00010006588) #26	UBR2 (ENSVURG00010006540) #27	PRPH2 (ENSVURG00010006530) #28	TBCC (ENSVURG00010006523) #29	BICRAL (ENSVURG00010006494) #30	RPL7L1 (ENSVURG00010006479) #31	ENSVURG00010006468	ENSVURG00010006455	CNPY3 (ENSVURG00010006443) #33
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000004054 #7	FOXP4 (ENSSHAG00000021467) #8	MDFI (ENSSHAG00000008515) #9	TFEB (ENSSHAG00000009705) #10	PGC (ENSSHAG00000010293) #11	ENSSHAG00000010582	FRS3 (ENSSHAG00000023844) #12	ENSSHAG00000010776	ENSSHAG00000025322 #13	MED20 (ENSSHAG00000010951) #16	USP49 (ENSSHAG00000021910) #15	BYSL (ENSSHAG00000003954) #17	ENSSHAG00000004385 #18	ENSSHAG00000024224 #20	C6orf132 (ENSSHAG00000004734) #21	ENSSHAG00000031266 #22	GUCA1A (ENSSHAG00000006248) #23	ENSSHAG00000002008	ENSSHAG00000007210	ENSSHAG00000030492	ENSSHAG00000004955	ENSSHAG00000029849	ENSSHAG00000031666	ENSSHAG00000029599	ENSSHAG00000001704	MRPS10 (ENSSHAG00000031320) #25	TRERF1 (ENSSHAG00000004599) #26	ENSSHAG00000030340	UBR2 (ENSSHAG00000009287) #27	PRPH2 (ENSSHAG00000001537) #28	TBCC (ENSSHAG00000028400) #29
Opossum	MODERN SPECIES	1	FOXP4 (ENSMODG00000012934) #8	MDFI (ENSMODG00000047715) #9	ENSMODG00000012910 #11	ENSMODG00000023712	ENSMODG00000044033	USP49 (ENSMODG00000012836) #15	FRS3 (ENSMODG00000046484) #12	ENSMODG00000012839 #13	ENSMODG00000037162 #14	ENSMODG00000049178	MED20 (ENSMODG00000046391) #16	BYSL (ENSMODG00000012808) #17	CCND3 (ENSMODG00000012797) #18	ENSMODG00000012785 #20	ENSMODG00000040176 #21	ENSMODG00000047404 #22	GUCA1A (ENSMODG00000012758) #23	ENSMODG00000012706	ENSMODG00000012700	ENSMODG00000039816	ENSMODG00000051485	MRPS10 (ENSMODG00000019045) #25	TRERF1 (ENSMODG00000019042) #26	UBR2 (ENSMODG00000019037) #27	PRPH2 (ENSMODG00000019032) #28	TBCC (ENSMODG00000018987) #29	BICRAL (ENSMODG00000019030) #30	RPL7L1 (ENSMODG00000019028) #31	ENSMODG00000038338 #32	CNPY3 (ENSMODG00000019022) #33	GNMT (ENSMODG00000019018) #35