Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Primates	ANCESTRAL SPECIES	5	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996 #26	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996 #26	ENSGT00940000160303.b #27	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #28	ENSGT00910000147272	ENSGT00940000157303 #29	ENSGT00910000147470	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.`b.a.b.b ##32	ENSGT00440000034488	ENSGT00950000182878.b.b.`b.a.b.a.a #32
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996 #26	ENSGT00940000160303.b #27	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #28	ENSGT00910000147272	ENSGT00940000157303 #29	ENSGT00910000147470	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.`b.a.b.a.a #32	ENSGT00440000034488	ENSGT00950000182878.b.b.`b.b ##32
Rhinopithecus	ANCESTRAL SPECIES	26	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000164010	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996 #26	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00910000147470	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.`b.a.b.a.a.c.b.a #32	ENSGT00950000182878.b.b.`b.a.b.a.a.c.a ##32	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35
Black snub-nosed monkey	MODERN SPECIES	593		NCR2 (ENSRBIG00000040162) #8	FOXP4 (ENSRBIG00000032681) #9	MDFI (ENSRBIG00000041804) #10	TFEB (ENSRBIG00000007714) #11	PGC (ENSRBIG00000038339) #12	FRS3 (ENSRBIG00000031884) #13	ENSRBIG00000035540 #14	PRICKLE4 (ENSRBIG00000034766) #15	USP49 (ENSRBIG00000040256) #16	MED20 (ENSRBIG00000025814) #17	BYSL (ENSRBIG00000030183) #18	CCND3 (ENSRBIG00000037954) #19	TAF8 (ENSRBIG00000040154) #20	C6orf132 (ENSRBIG00000040715) #21	GUCA1ANB (ENSRBIG00000033615) #22	GUCA1A (ENSRBIG00000037690) #23	GUCA1B (ENSRBIG00000038802) #24	MRPS10 (ENSRBIG00000034975) #25	ENSRBIG00000033519 #26	TRERF1 (ENSRBIG00000030162) #27	UBR2 (ENSRBIG00000039033) #28	PRPH2 (ENSRBIG00000043861) #29	TBCC (ENSRBIG00000003966) #30	BICRAL (ENSRBIG00000038859) #31	ENSRBIG00000041359 #32	PTCRA (ENSRBIG00000008300) #33	CNPY3 (ENSRBIG00000044857) #34	GNMT (ENSRBIG00000044856) #35	PEX6 (ENSRBIG00000027362) #36	PPP2R5D (ENSRBIG00000026732) #37
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.h #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996 #26	ENSGT00940000160303.b #27	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #28	ENSGT00910000147272	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.`b.a.b.a.a.b.b #32	ENSGT00440000034488	ENSGT00950000182878.b.b.`b.b.a ##32	ENSGT00390000007712 #33
Vervet Monkey	MODERN SPECIES	8	TREML4 (ENSCSAG00000011253) ##8	TREM1 (ENSCSAG00000011258)	FOXP4 (ENSCSAG00000011262) #9	MDFI (ENSCSAG00000011270) #10	TFEB (ENSCSAG00000011274) #11	PGC (ENSCSAG00000011279) #12	FRS3 (ENSCSAG00000011283) #13	PRICKLE4 (ENSCSAG00000011286) #15	TOMM6 (ENSCSAG00000011289) #14	USP49 (ENSCSAG00000011293) #16	MED20 (ENSCSAG00000011299) #17	BYSL (ENSCSAG00000011306) #18	CCND3 (ENSCSAG00000011312) #19	TAF8 (ENSCSAG00000011346) ##20	C6orf132 (ENSCSAG00000011367) #21	GUCA1ANB (ENSCSAG00000011377) #22	GUCA1A (ENSCSAG00000011389) #23	GUCA1B (ENSCSAG00000011404) #24	MRPS10 (ENSCSAG00000011412) #25	TRERF1 (ENSCSAG00000011422) #27	UBR2 (ENSCSAG00000011442) #28	PRPH2 (ENSCSAG00000011454) #29	ENSCSAG00000019300	BICRAL (ENSCSAG00000011469) #31	ENSCSAG00000011487 #32	PTCRA (ENSCSAG00000011495) #33	CNPY3 (ENSCSAG00000011504) #34	GNMT (ENSCSAG00000011512) #35	PEX6 (ENSCSAG00000011522) #36	PPP2R5D (ENSCSAG00000011537) #37	MEA1 (ENSCSAG00000011526)
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.h #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996 #26	ENSGT00940000160303.b #27	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #28	ENSGT00910000147272	ENSGT00940000157303 #29	ENSGT00550000074873.b	ENSGT00940000154400.a.b	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.`b.a.b.a.a.b.b #32	ENSGT00440000034488
Cercopithecinae_b	ANCESTRAL SPECIES	18	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.h #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996 #26	ENSGT00940000160303.b #27	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #28	ENSGT00910000147272	ENSGT00940000157303 #29	ENSGT00550000074873.b	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.`b.a.b.a.a.b.b #32	ENSGT00440000034488	ENSGT00950000182878.b.b.`b.b.a ##32
Olive baboon	MODERN SPECIES	16	TREM1 (ENSPANG00000015746)	NCR2 (ENSPANG00000007120) #8	FOXP4 (ENSPANG00000018703) #9	MDFI (ENSPANG00000021605) #10	TFEB (ENSPANG00000009713) #11	PGC (ENSPANG00000001300) #12	FRS3 (ENSPANG00000017337) #13	PRICKLE4 (ENSPANG00000017338) #15	TOMM6 (ENSPANG00000048754) #14	USP49 (ENSPANG00000018044) #16	MED20 (ENSPANG00000021506) #17	BYSL (ENSPANG00000041019) #18	CCND3 (ENSPANG00000022611) #19	TAF8 (ENSPANG00000016963) #20	C6orf132 (ENSPANG00000040893) #21	GUCA1ANB (ENSPANG00000021577) #22	GUCA1A (ENSPANG00000042377) #23	GUCA1B (ENSPANG00000024034) #24	MRPS10 (ENSPANG00000037120) #25	TRERF1 (ENSPANG00000009451) #27	ENSPANG00000047444	UBR2 (ENSPANG00000011151) #28	PRPH2 (ENSPANG00000018347) #29	ENSPANG00000049589	TBCC (ENSPANG00000025697) #30	BICRAL (ENSPANG00000009449) #31	ENSPANG00000008439 #32	CNPY3 (ENSPANG00000022346) #34	GNMT (ENSPANG00000022693) #35	PEX6 (ENSPANG00000024222) #36	PPP2R5D (ENSPANG00000000811) #37
Macaca	ANCESTRAL SPECIES	9	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.h #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00550000074873.b	ENSGT00940000154400.a.b	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.`b.a.b.a.a.b.b #32	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.h #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000166143.A.a.b.a.b.a.a.a.b	ENSGT00940000157303 #29	ENSGT00550000074873.b	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.`b.a.b.a.a.b.b #32	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Rhesus	MODERN SPECIES	14	TREML2 (ENSMMUG00000049500) ##8	TREM1 (ENSMMUG00000003674)	NCR2 (ENSMMUG00000003675) #8	ENSMMUG00000063258	FOXP4 (ENSMMUG00000019985) #9	MDFI (ENSMMUG00000009449) #10	TFEB (ENSMMUG00000004690) #11	PGC (ENSMMUG00000048466) #12	FRS3 (ENSMMUG00000012417) #13	PRICKLE4 (ENSMMUG00000012419) #15	USP49 (ENSMMUG00000012421) #16	BYSL (ENSMMUG00000004416) #18	CCND3 (ENSMMUG00000004419) #19	TAF8 (ENSMMUG00000012470) #20	C4H6orf132 (ENSMMUG00000042009) #21	GUCA1ANB (ENSMMUG00000047592) #22	GUCA1A (ENSMMUG00000000872) #23	GUCA1B (ENSMMUG00000003999) #24	TRERF1 (ENSMMUG00000005575) #27	UBR2 (ENSMMUG00000005675) #28	ENSMMUG00000059702	PRPH2 (ENSMMUG00000057019) #29	ENSMMUG00000005679	TBCC (ENSMMUG00000001305) #30	BICRAL (ENSMMUG00000029682) #31	ENSMMUG00000053755	RPL7L1 (ENSMMUG00000021313) #32	ENSMMUG00000056117	PTCRA (ENSMMUG00000000460) #33	CNPY3 (ENSMMUG00000058425) #34	GNMT (ENSMMUG00000001393) #35
Crab-eating macaque	MODERN SPECIES	14	FOXP4 (ENSMFAG00000033620) #9	MDFI (ENSMFAG00000004961) #10	TFEB (ENSMFAG00000040195) #11	PGC (ENSMFAG00000038363) #12	FRS3 (ENSMFAG00000037819) #13	PRICKLE4 (ENSMFAG00000034421) #15	TOMM6 (ENSMFAG00000028918) #14	MED20 (ENSMFAG00000057486) #17	BYSL (ENSMFAG00000033214) #18	USP49 (ENSMFAG00000040586) #16	CCND3 (ENSMFAG00000039022) #19	ENSMFAG00000048664	TAF8 (ENSMFAG00000037574) #20	ENSMFAG00000044246	ENSMFAG00000065376	ENSMFAG00000003087 #22	GUCA1A (ENSMFAG00000035647) #23	GUCA1B (ENSMFAG00000031539) #24	MRPS10 (ENSMFAG00000046129) #25	ENSMFAG00000061896	TRERF1 (ENSMFAG00000045736) #27	UBR2 (ENSMFAG00000041378) #28	ENSMFAG00000063980	PRPH2 (ENSMFAG00000037918) #29	TBCC (ENSMFAG00000003179) #30	BICRAL (ENSMFAG00000001446) #31	ENSMFAG00000054119	RPL7L1 (ENSMFAG00000053469) #32	CNPY3 (ENSMFAG00000030669) #34	GNMT (ENSMFAG00000045063) #35	PEX6 (ENSMFAG00000034586) #36
Pig-tailed macaque	MODERN SPECIES	157	TREML4 (ENSMNEG00000038195) ##8	TREM1 (ENSMNEG00000006419)	NCR2 (ENSMNEG00000044377) #8	FOXP4 (ENSMNEG00000002954) #9	MDFI (ENSMNEG00000036442) #10	TFEB (ENSMNEG00000036203) #11	PGC (ENSMNEG00000028197) #12	FRS3 (ENSMNEG00000023654) #13	ENSMNEG00000037078 #14	PRICKLE4 (ENSMNEG00000037818) #15	USP49 (ENSMNEG00000043085) #16	BYSL (ENSMNEG00000043045) #18	CCND3 (ENSMNEG00000037933) #19	TAF8 (ENSMNEG00000037201) #20	C6orf132 (ENSMNEG00000031453) #21	GUCA1ANB (ENSMNEG00000030746) #22	GUCA1A (ENSMNEG00000032487) #23	GUCA1B (ENSMNEG00000039223) #24	MRPS10 (ENSMNEG00000041503) #25	TRERF1 (ENSMNEG00000042787) #27	UBR2 (ENSMNEG00000044587) #28	PRPH2 (ENSMNEG00000042503) #29	ENSMNEG00000000026	ENSMNEG00000029388	TBCC (ENSMNEG00000029588) #30	BICRAL (ENSMNEG00000038559) #31	ENSMNEG00000033812 #32	PTCRA (ENSMNEG00000033559) #33	CNPY3 (ENSMNEG00000044020) #34	GNMT (ENSMNEG00000036639) #35	PEX6 (ENSMNEG00000039925) #36
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996 #26	ENSGT00940000160303.b #27	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #28	ENSGT00910000147272	ENSGT00940000157303 #29	ENSGT00910000147470	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.`b.a.b.b ##32	ENSGT00440000034488	ENSGT00390000007712 #33
Hominidae	ANCESTRAL SPECIES	5	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996 #26	ENSGT00940000160303.b #27	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #28	ENSGT00910000147272	ENSGT00940000157303 #29	ENSGT00910000147470	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.`b.a.b.b ##32	ENSGT00440000034488	ENSGT00390000007712 #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691.c.a #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00500000045496	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996 #26	ENSGT00940000160303.b #27	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #28	ENSGT00910000147272	ENSGT00940000157303 #29	ENSGT00910000147470	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.`b.a.b.b ##32	ENSGT00440000034488	ENSGT00390000007712 #33
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691.c.a #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00500000045496	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #28	ENSGT00910000147272	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.`b.a.b.b ##32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00950000183105.A.m.b
Pan	ANCESTRAL SPECIES	5	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691.c.a #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00500000045496	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00570000081157	ENSGT00950000183075.a.a.a.a #28	ENSGT00910000147272	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.`b.a.b.b.c ##32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00950000183105.A.m.b
Chimpanzee	MODERN SPECIES	19	NCR2 (ENSPTRG00000018154) #8	FOXP4 (ENSPTRG00000018155) #9	MDFI (ENSPTRG00000018156) #10	TFEB (ENSPTRG00000018157) #11	PGC (ENSPTRG00000018158) #12	FRS3 (ENSPTRG00000018159) #13	ENSPTRG00000018160 #15	TOMM6 (ENSPTRG00000034313) #14	ENSPTRG00000043479 #16	ENSPTRG00000044058	MED20 (ENSPTRG00000018162) #17	BYSL (ENSPTRG00000018163) #18	CCND3 (ENSPTRG00000018164) #19	TAF8 (ENSPTRG00000018165) #20	C6H6orf132 (ENSPTRG00000018166) #21	GUCA1ANB (ENSPTRG00000044074) #22	GUCA1A (ENSPTRG00000018167) #23	GUCA1B (ENSPTRG00000018168) #24	MRPS10 (ENSPTRG00000018169) #25	TRERF1 (ENSPTRG00000018170) #27	ENSPTRG00000048021 #26	ENSPTRG00000044341	UBR2 (ENSPTRG00000018171) #28	ENSPTRG00000043287	PRPH2 (ENSPTRG00000018172) #29	TBCC (ENSPTRG00000018173) #30	BICRAL (ENSPTRG00000018174) #31	RPL7L1 (ENSPTRG00000018175) ##32	PTCRA (ENSPTRG00000018176) #33	CNPY3 (ENSPTRG00000018177) #34	ENSPTRG00000029670
Bonobo	MODERN SPECIES	19	TREM1 (ENSPPAG00000041252)	NCR2 (ENSPPAG00000023463) #8	FOXP4 (ENSPPAG00000040751) #9	MDFI (ENSPPAG00000037978) #10	TFEB (ENSPPAG00000038219) #11	PGC (ENSPPAG00000043009) #12	FRS3 (ENSPPAG00000041989) #13	PRICKLE4 (ENSPPAG00000035806) #15	USP49 (ENSPPAG00000018338) #16	ENSPPAG00000005179	MED20 (ENSPPAG00000033578) #17	BYSL (ENSPPAG00000028063) #18	CCND3 (ENSPPAG00000028061) #19	ENSPPAG00000003755 #20	C6orf132 (ENSPPAG00000029653) #21	GUCA1ANB (ENSPPAG00000041508) #22	GUCA1A (ENSPPAG00000038612) #23	GUCA1B (ENSPPAG00000028630) #24	MRPS10 (ENSPPAG00000041229) #25	TRERF1 (ENSPPAG00000032564) #27	ENSPPAG00000000666	UBR2 (ENSPPAG00000028429) #28	ENSPPAG00000041554	PRPH2 (ENSPPAG00000035254) #29	TBCC (ENSPPAG00000005383) #30	BICRAL (ENSPPAG00000041829) #31	ENSPPAG00000028326 ##32	C6orf226 (ENSPPAG00000021377)	PTCRA (ENSPPAG00000039945) #33	CNPY3 (ENSPPAG00000036349) #34	GNMT (ENSPPAG00000000924) #35
Human	MODERN SPECIES	18	TREM1 (ENSG00000124731)	NCR2 (ENSG00000096264) #8	FOXP4 (ENSG00000137166) #9	MDFI (ENSG00000112559) #10	TFEB (ENSG00000112561) #11	PGC (ENSG00000096088) #12	FRS3 (ENSG00000137218) #13	PRICKLE4 (ENSG00000278224) #15	TOMM6 (ENSG00000214736) #14	USP49 (ENSG00000164663) #16	MED20 (ENSG00000124641) #17	BYSL (ENSG00000112578) #18	CCND3 (ENSG00000112576) #19	TAF8 (ENSG00000137413) #20	C6orf132 (ENSG00000188112) #21	GUCA1ANB (ENSG00000287363) #22	ENSG00000290147	GUCA1A (ENSG00000048545) #23	GUCA1B (ENSG00000112599) #24	MRPS10 (ENSG00000048544) #25	TRERF1 (ENSG00000124496) #27	UBR2 (ENSG00000024048) #28	PRPH2 (ENSG00000112619) #29	TBCC (ENSG00000124659) #30	BICRAL (ENSG00000112624) #31	RPL7L1 (ENSG00000146223) ##32	C6orf226 (ENSG00000221821)	PTCRA (ENSG00000171611) #33	CNPY3 (ENSG00000137161) #34	GNMT (ENSG00000124713) #35	PEX6 (ENSG00000124587) #36
Orangutan	MODERN SPECIES	19	FOXP4 (ENSPPYG00000016596) #9	MDFI (ENSPPYG00000016598) #10	TFEB (ENSPPYG00000016599) #11	PGC (ENSPPYG00000016601) #12	FRS3 (ENSPPYG00000016602) #13	PRICKLE4 (ENSPPYG00000016603) #15	TOMM6 (ENSPPYG00000033566) #14	USP49 (ENSPPYG00000016604) #16	MED20 (ENSPPYG00000016606) #17	BYSL (ENSPPYG00000017273) #18	CCND3 (ENSPPYG00000016607) #19	ENSPPYG00000016608 #20	ENSPPYG00000039497 #21	ENSPPYG00000033111	GUCA1A (ENSPPYG00000016611) #23	GUCA1ANB (ENSPPYG00000037366) #22	GUCA1B (ENSPPYG00000016612) #24	MRPS10 (ENSPPYG00000016613) #25	TRERF1 (ENSPPYG00000016614) #27	ENSPPYG00000034248	UBR2 (ENSPPYG00000016616) #28	PRPH2 (ENSPPYG00000016617) #29	TBCC (ENSPPYG00000017265) #30	BICRAL (ENSPPYG00000016618) #31	RPL7L1 (ENSPPYG00000016619) ##32	C6orf226 (ENSPPYG00000016620)	PTCRA (ENSPPYG00000016621) #33	CNPY3 (ENSPPYG00000016622) #34	GNMT (ENSPPYG00000016623) #35	PEX6 (ENSPPYG00000016624) #36	PPP2R5D (ENSPPYG00000016625) #37
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.f #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996 #26	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.cb.b.a #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Cebidae	ANCESTRAL SPECIES	5	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.f #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996 #26	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.cb.b.a #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Cebidae_a	ANCESTRAL SPECIES	25	ENSGT00940000153835.a.b.c.a.a ##8	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00910000146996 #26	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.cb.b.a #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	49	TREML4 (ENSSBOG00000013316) ##8	TREM1 (ENSSBOG00000022642)	NCR2 (ENSSBOG00000001345) #8	FOXP4 (ENSSBOG00000031733) #9	MDFI (ENSSBOG00000025433) #10	TFEB (ENSSBOG00000030350) #11	PGC (ENSSBOG00000024240) #12	FRS3 (ENSSBOG00000034869) #13	PRICKLE4 (ENSSBOG00000018251) #15	USP49 (ENSSBOG00000000054) #16	MED20 (ENSSBOG00000028787) #17	BYSL (ENSSBOG00000034517) #18	CCND3 (ENSSBOG00000021250) #19	TAF8 (ENSSBOG00000025407) #20	C6orf132 (ENSSBOG00000023219) #21	ENSSBOG00000028532 #22	GUCA1A (ENSSBOG00000031079) #23	GUCA1B (ENSSBOG00000034300) #24	MRPS10 (ENSSBOG00000022651) #25	ENSSBOG00000020519 #26	TRERF1 (ENSSBOG00000030453) #27	UBR2 (ENSSBOG00000032257) #28	PRPH2 (ENSSBOG00000022403) #29	BICRAL (ENSSBOG00000033360) #31	PTCRA (ENSSBOG00000025093) #33	CNPY3 (ENSSBOG00000035845) #34	GNMT (ENSSBOG00000023382) #35	PEX6 (ENSSBOG00000021202) #36	ENSSBOG00000020796	PPP2R5D (ENSSBOG00000033250) #37	ENSSBOG00000000614
Bolivian squirrel monkey	MODERN SPECIES	10																ENSSBOG00000028362 #22
Capuchin	MODERN SPECIES	197	TREM1 (ENSCCAG00000035739)	NCR2 (ENSCCAG00000018571) #8	FOXP4 (ENSCCAG00000021468) #9	MDFI (ENSCCAG00000021635) #10	TFEB (ENSCCAG00000036755) #11	PGC (ENSCCAG00000032433) #12	FRS3 (ENSCCAG00000023089) #13	PRICKLE4 (ENSCCAG00000035589) #15	USP49 (ENSCCAG00000035356) #16	MED20 (ENSCCAG00000025677) #17	BYSL (ENSCCAG00000036583) #18	CCND3 (ENSCCAG00000023865) #19	ENSCCAG00000032788	TAF8 (ENSCCAG00000019516) #20	C6orf132 (ENSCCAG00000020133) #21	GUCA1ANB (ENSCCAG00000036979) #22	GUCA1A (ENSCCAG00000034483) #23	GUCA1B (ENSCCAG00000034846) #24	MRPS10 (ENSCCAG00000037430) #25	TRERF1 (ENSCCAG00000037441) #27	UBR2 (ENSCCAG00000027347) #28	PRPH2 (ENSCCAG00000035220) #29	BICRAL (ENSCCAG00000022238) #31	ENSCCAG00000026245 #32	C6orf226 (ENSCCAG00000028662)	PTCRA (ENSCCAG00000027445) #33	CNPY3 (ENSCCAG00000031450) #34	PEX6 (ENSCCAG00000029488) #36	GNMT (ENSCCAG00000035170) #35	PPP2R5D (ENSCCAG00000021529) #37	ENSCCAG00000032843
Marmoset	MODERN SPECIES	16	MDFI (ENSCJAG00000044429) #10	TFEB (ENSCJAG00000004199) #11	PGC (ENSCJAG00000004226) #12	FRS3 (ENSCJAG00000004240) #13	PRICKLE4 (ENSCJAG00000004246) #15	ENSCJAG00000081865 #14	USP49 (ENSCJAG00000004251) #16	MED20 (ENSCJAG00000004259) #17	BYSL (ENSCJAG00000004266) #18	CCND3 (ENSCJAG00000004284) #19	ENSCJAG00000084284	ENSCJAG00000070491	ENSCJAG00000083522	TAF8 (ENSCJAG00000004292) #20	C6orf132 (ENSCJAG00000039441) #21	GUCA1ANB (ENSCJAG00000042922) #22	GUCA1A (ENSCJAG00000004301) #23	GUCA1B (ENSCJAG00000070620) #24	MRPS10 (ENSCJAG00000075253) #25	TRERF1 (ENSCJAG00000004347) #27	UBR2 (ENSCJAG00000004399) #28	PRPH2 (ENSCJAG00000004580) #29	ENSCJAG00000074599 #30	BICRAL (ENSCJAG00000004594) #31	ENSCJAG00000004637 #32	C6orf226 (ENSCJAG00000023341)	ENSCJAG00000086222	CNPY3 (ENSCJAG00000004662) #34	GNMT (ENSCJAG00000004675) #35	PEX6 (ENSCJAG00000004684) #36	PPP2R5D (ENSCJAG00000004782) #37
Mas night monkey	MODERN SPECIES	882	NCR2 (ENSANAG00000031953) #8	FOXP4 (ENSANAG00000029480) #9	MDFI (ENSANAG00000031928) #10	TFEB (ENSANAG00000035745) #11	PGC (ENSANAG00000033780) #12	FRS3 (ENSANAG00000020838) #13	PRICKLE4 (ENSANAG00000019187) #15	TOMM6 (ENSANAG00000032387) #14	USP49 (ENSANAG00000021297) #16	MED20 (ENSANAG00000030569) #17	BYSL (ENSANAG00000036138) #18	CCND3 (ENSANAG00000027461) #19	TAF8 (ENSANAG00000027075) #20	ENSANAG00000019684	C6orf132 (ENSANAG00000027834) #21	GUCA1ANB (ENSANAG00000021488) #22	GUCA1A (ENSANAG00000019979) #23	GUCA1B (ENSANAG00000037665) #24	MRPS10 (ENSANAG00000034917) #25	ENSANAG00000038064 #26	TRERF1 (ENSANAG00000024278) #27	ENSANAG00000022408	UBR2 (ENSANAG00000029753) #28	PRPH2 (ENSANAG00000023340) #29	BICRAL (ENSANAG00000036073) #31	ENSANAG00000024167 #32	PTCRA (ENSANAG00000025975) #33	CNPY3 (ENSANAG00000023982) #34	GNMT (ENSANAG00000021291) #35	PEX6 (ENSANAG00000032772) #36	ENSANAG00000033080
Tarsier	MODERN SPECIES	5193		FOXP4 (ENSTSYG00000030741) #9	MDFI (ENSTSYG00000006245) #10	TFEB (ENSTSYG00000030287) #11	PGC (ENSTSYG00000031976) #12	FRS3 (ENSTSYG00000001230) #13	PRICKLE4 (ENSTSYG00000037133) #15	TOMM6 (ENSTSYG00000036201) #14	USP49 (ENSTSYG00000014109) #16	MED20 (ENSTSYG00000008567) #17	BYSL (ENSTSYG00000029904) #18	CCND3 (ENSTSYG00000001391) #19	ENSTSYG00000036050	TAF8 (ENSTSYG00000007576) #20	ENSTSYG00000008103	GUCA1ANB (ENSTSYG00000034451) #22	GUCA1A (ENSTSYG00000029875) #23	GUCA1B (ENSTSYG00000006949) #24	MRPS10 (ENSTSYG00000028450) #25	TRERF1 (ENSTSYG00000003874) #27	UBR2 (ENSTSYG00000011535) #28	PRPH2 (ENSTSYG00000011558) #29	SRCIN1 (ENSTSYG00000033236)
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b #32	ENSGT00940000167232	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000168448	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.w.b.a.b #32	ENSGT00940000167232	ENSGT00950000182878.b.b.w.a #32	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Mouse lemur	MODERN SPECIES	28	ENSMICG00000033947	ENSMICG00000042409	NCR2 (ENSMICG00000013695) #8	FOXP4 (ENSMICG00000036858) #9	MDFI (ENSMICG00000015669) #10	TFEB (ENSMICG00000015674) #11	ENSMICG00000041517 #12	FRS3 (ENSMICG00000006286) #13	PRICKLE4 (ENSMICG00000015699) #15	TOMM6 (ENSMICG00000047932) #14	USP49 (ENSMICG00000033911) #16	BYSL (ENSMICG00000011347) #18	CCND3 (ENSMICG00000027138) #19	ENSMICG00000011353 #20	ENSMICG00000044021	GUCA1ANB (ENSMICG00000029430) #22	GUCA1A (ENSMICG00000011368) #23	GUCA1B (ENSMICG00000047497) #24	MRPS10 (ENSMICG00000011379) #25	TRERF1 (ENSMICG00000011387) #27	ENSMICG00000044890	UBR2 (ENSMICG00000003745) #28	PRPH2 (ENSMICG00000044138) #29	BICRAL (ENSMICG00000003774) #31	ENSMICG00000047101 #32	ENSMICG00000003791	PTCRA (ENSMICG00000008212) #33	ENSMICG00000036185	CNPY3 (ENSMICG00000042564) #34	GNMT (ENSMICG00000008225) #35	PEX6 (ENSMICG00000008232) #36
Lemuriformes_a	ANCESTRAL SPECIES	4	ENSGT00470000042299	ENSGT00940000153835.a.b.c.a.b #8	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567.f #20	ENSGT00940000168448	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.w.a.b #32	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Coquerels sifaka	MODERN SPECIES	209	ENSPCOG00000000279	NCR2 (ENSPCOG00000008841) #8	FOXP4 (ENSPCOG00000024346) #9	MDFI (ENSPCOG00000021967) #10	TFEB (ENSPCOG00000006243) #11	PGC (ENSPCOG00000028478) #12	FRS3 (ENSPCOG00000010536) #13	PRICKLE4 (ENSPCOG00000014324) #15	TOMM6 (ENSPCOG00000000127) #14	USP49 (ENSPCOG00000026508) #16	MED20 (ENSPCOG00000014401) #17	ENSPCOG00000020727 #18	ENSPCOG00000022903 #19	TAF8 (ENSPCOG00000024880) #20	ENSPCOG00000021266	GUCA1ANB (ENSPCOG00000023632) #22	GUCA1A (ENSPCOG00000028552) #23	GUCA1B (ENSPCOG00000026339) #24	MRPS10 (ENSPCOG00000023681) #25	TRERF1 (ENSPCOG00000014905) #27	ENSPCOG00000022503 #28	PRPH2 (ENSPCOG00000018870) #29	BICRAL (ENSPCOG00000025959) #31	ENSPCOG00000014928 #32	PTCRA (ENSPCOG00000021697) #33	CNPY3 (ENSPCOG00000016021) #34	GNMT (ENSPCOG00000020942) #35	PEX6 (ENSPCOG00000017469) #36	PPP2R5D (ENSPCOG00000021120) #37	MEA1 (ENSPCOG00000008221)	KLHDC3 (ENSPCOG00000024925)
Greater bamboo lemur	MODERN SPECIES	305	NCR2 (ENSPSMG00000014933) #8	FOXP4 (ENSPSMG00000015073) #9	MDFI (ENSPSMG00000015258) #10	TFEB (ENSPSMG00000015301) #11	PGC (ENSPSMG00000015312) #12	FRS3 (ENSPSMG00000015327) #13	PRICKLE4 (ENSPSMG00000015341) #15	ENSPSMG00000015344 #14	USP49 (ENSPSMG00000015351) #16	ENSPSMG00000015365	MED20 (ENSPSMG00000015394) #17	BYSL (ENSPSMG00000015433) #18	CCND3 (ENSPSMG00000015483) #19	TAF8 (ENSPSMG00000015571) #20	ENSPSMG00000015586	GUCA1ANB (ENSPSMG00000015588) #22	GUCA1A (ENSPSMG00000015595) #23	GUCA1B (ENSPSMG00000015611) #24	MRPS10 (ENSPSMG00000015628) #25	TRERF1 (ENSPSMG00000015749) #27	ENSPSMG00000015803	ENSPSMG00000015807	UBR2 (ENSPSMG00000016053) #28	PRPH2 (ENSPSMG00000016187) #29	TBCC (ENSPSMG00000016192) #30	BICRAL (ENSPSMG00000016204) #31	ENSPSMG00000016210	CNPY3 (ENSPSMG00000016229) #34	GNMT (ENSPSMG00000016245) #35	PEX6 (ENSPSMG00000016272) #36	PPP2R5D (ENSPSMG00000016658) #37
Bushbaby	MODERN SPECIES	146	NCR2 (ENSOGAG00000015254) #8	FOXP4 (ENSOGAG00000010113) #9	MDFI (ENSOGAG00000010114) #10	TFEB (ENSOGAG00000010116) #11	PGC (ENSOGAG00000015217) #12	FRS3 (ENSOGAG00000013038) #13	PRICKLE4 (ENSOGAG00000015219) #15	TOMM6 (ENSOGAG00000027968) #14	USP49 (ENSOGAG00000015223) #16	MED20 (ENSOGAG00000015228) #17	BYSL (ENSOGAG00000015234) #18	CCND3 (ENSOGAG00000028111) #19	ENSOGAG00000033136	TAF8 (ENSOGAG00000016885) #20	C6orf132 (ENSOGAG00000031300) #21	GUCA1ANB (ENSOGAG00000034714) #22	GUCA1A (ENSOGAG00000016889) #23	GUCA1B (ENSOGAG00000016891) #24	MRPS10 (ENSOGAG00000016892) #25	TRERF1 (ENSOGAG00000025610) #27	UBR2 (ENSOGAG00000012644) #28	PRPH2 (ENSOGAG00000012661) #29	TBCC (ENSOGAG00000028970) #30	BICRAL (ENSOGAG00000012664) #31	ENSOGAG00000012671 #32	PTCRA (ENSOGAG00000012675) #33	CNPY3 (ENSOGAG00000024957) #34	ENSOGAG00000034570	GNMT (ENSOGAG00000012676) #35	PEX6 (ENSOGAG00000012681) #36	PPP2R5D (ENSOGAG00000012686) #37
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Glires	ANCESTRAL SPECIES	5	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Rodentia	ANCESTRAL SPECIES	6	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b #32	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00470000042299	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00940000164010	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b #32	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00470000042299	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00940000164010	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000159766 #31	ENSGT00950000182878.b.b #32	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927	ENSGT00940000157952
Guinea pig	MODERN SPECIES	15	ENSCPOG00000038425 ##8	ENSCPOG00000032015	FOXP4 (ENSCPOG00000022669) #9	MDFI (ENSCPOG00000011270) #10	TFEB (ENSCPOG00000008027) #11	Pgc (ENSCPOG00000007183) #12	FRS3 (ENSCPOG00000009128) #13	PRICKLE4 (ENSCPOG00000025180) #15	TOMM6 (ENSCPOG00000026731) #14	USP49 (ENSCPOG00000014200) #16	MED20 (ENSCPOG00000004401) #17	BYSL (ENSCPOG00000004403) #18	CCND3 (ENSCPOG00000025856) #19	TAF8 (ENSCPOG00000037188) #20	ENSCPOG00000008967	GUCA1ANB (ENSCPOG00000025639) #22	GUCA1A (ENSCPOG00000015715) #23	GUCA1B (ENSCPOG00000009971) #24	MRPS10 (ENSCPOG00000038656) #25	TRERF1 (ENSCPOG00000015717) #27	UBR2 (ENSCPOG00000008040) #28	PRPH2 (ENSCPOG00000008060) #29	BICRAL (ENSCPOG00000005531) #31	RPL7L1 (ENSCPOG00000021189) #32	ENSCPOG00000011961 #33	CNPY3 (ENSCPOG00000024487) #34	GNMT (ENSCPOG00000033341) #35	PEX6 (ENSCPOG00000008867) #36	PPP2R5D (ENSCPOG00000010949) #37	MEA1 (ENSCPOG00000022111)	KLHDC3 (ENSCPOG00000020000)
Sciuridae	ANCESTRAL SPECIES	1	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b #32	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Marmotini	ANCESTRAL SPECIES	18	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626.g.a.a #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b #32	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Alpin marmot	MODERN SPECIES	20	MDFI (ENSMMMG00000024477) #10	TFEB (ENSMMMG00000024479) #11	ENSMMMG00000024480 #12	ENSMMMG00000024481 #12	ENSMMMG00000024482 #12	ENSMMMG00000024483	ENSMMMG00000024484 #12	FRS3 (ENSMMMG00000024485) #13	TOMM6 (ENSMMMG00000024487) #14	USP49 (ENSMMMG00000024489) #16	MED20 (ENSMMMG00000024491) #17	BYSL (ENSMMMG00000024493) #18	CCND3 (ENSMMMG00000024495) #19	TAF8 (ENSMMMG00000024498) #20	C6orf132 (ENSMMMG00000024504) #21	GUCA1ANB (ENSMMMG00000024506) #22	GUCA1A (ENSMMMG00000024507) #23	GUCA1B (ENSMMMG00000024508) #24	MRPS10 (ENSMMMG00000024510) #25	TRERF1 (ENSMMMG00000024512) #27	UBR2 (ENSMMMG00000024514) #28	ENSMMMG00000024515	PRPH2 (ENSMMMG00000024516) #29	TBCC (ENSMMMG00000024517) #30	BICRAL (ENSMMMG00000024518) #31	ENSMMMG00000024521 #32	ENSMMMG00000024524 #33	CNPY3 (ENSMMMG00000024525) #34	GNMT (ENSMMMG00000024526) #35	PEX6 (ENSMMMG00000024527) #36	PPP2R5D (ENSMMMG00000024528) #37
Marmotini_b	ANCESTRAL SPECIES	8	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626.g.a.a #12	ENSGT00940000160626.g.a.b #12	ENSGT00940000160626.h.a #12	ENSGT00940000160626.h.b #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00940000167232	ENSGT00950000182878.b.b #32	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Arctic ground squirrel	MODERN SPECIES	25	TFEB (ENSUPAG00010017231) #11	ENSUPAG00010017263 #12	ENSUPAG00010017268 #12	ENSUPAG00010017270 #12	ENSUPAG00010017278 #12	FRS3 (ENSUPAG00010017434) #13	PRICKLE4 (ENSUPAG00010017449) #15	TOMM6 (ENSUPAG00010017460) #14	USP49 (ENSUPAG00010017466) #16	ENSUPAG00010017473	MED20 (ENSUPAG00010017477) #17	BYSL (ENSUPAG00010017483) #18	ENSUPAG00010017494 #19	TAF8 (ENSUPAG00010017545) #20	C6orf132 (ENSUPAG00010017552) #21	GUCA1ANB (ENSUPAG00010017561) #22	GUCA1A (ENSUPAG00010017567) #23	GUCA1B (ENSUPAG00010017574) #24	MRPS10 (ENSUPAG00010017579) #25	TRERF1 (ENSUPAG00010017612) #27	UBR2 (ENSUPAG00010017681) #28	PRPH2 (ENSUPAG00010017789) #29	TBCC (ENSUPAG00010017795) #30	BICRAL (ENSUPAG00010017797) #31	ENSUPAG00010017818	ENSUPAG00010017828	ENSUPAG00010017837 #33	CNPY3 (ENSUPAG00010017840) #34	GNMT (ENSUPAG00010017846) #35	PEX6 (ENSUPAG00010017851) #36	PPP2R5D (ENSUPAG00010017909) #37
Squirrel	MODERN SPECIES	76	ENSSTOG00000026734 #12	ENSSTOG00000027884 #12	ENSSTOG00000028126	ENSSTOG00000022561 #12	ENSSTOG00000032241 #12	ENSSTOG00000006547 #12	FRS3 (ENSSTOG00000006583) #13	PRICKLE4 (ENSSTOG00000006618) #15	TOMM6 (ENSSTOG00000027205) #14	USP49 (ENSSTOG00000025366) #16	MED20 (ENSSTOG00000015649) #17	BYSL (ENSSTOG00000021848) #18	CCND3 (ENSSTOG00000021553) #19	TAF8 (ENSSTOG00000015660) #20	ENSSTOG00000020834	ENSSTOG00000028530 #22	GUCA1A (ENSSTOG00000023474) #23	GUCA1B (ENSSTOG00000029266) #24	MRPS10 (ENSSTOG00000027016) #25	TRERF1 (ENSSTOG00000022996) #27	UBR2 (ENSSTOG00000025376) #28	PRPH2 (ENSSTOG00000034259) #29	TBCC (ENSSTOG00000009828) #30	BICRAL (ENSSTOG00000009833) #31	ENSSTOG00000033032	RPL7L1 (ENSSTOG00000030480) #32	ENSSTOG00000031403 #33	CNPY3 (ENSSTOG00000027284) #34	GNMT (ENSSTOG00000009464) #35	PEX6 (ENSSTOG00000009471) #36	PPP2R5D (ENSSTOG00000020905) #37
Eurasian red squirrel	MODERN SPECIES	16	FOXP4 (ENSSVLG00005011599) #9	MDFI (ENSSVLG00005011488) #10	TFEB (ENSSVLG00005011275) #11	ENSSVLG00005010996 #12	ENSSVLG00005010518 #12	ENSSVLG00005010387 #12	ENSSVLG00005010119 #12	FRS3 (ENSSVLG00005010054) #13	ENSSVLG00005009846 #14	USP49 (ENSSVLG00005009753) #16	MED20 (ENSSVLG00005009716) #17	BYSL (ENSSVLG00005009680) #18	CCND3 (ENSSVLG00005009557) #19	ENSSVLG00005009511	TAF8 (ENSSVLG00005009379) #20	ENSSVLG00005009295 #22	GUCA1A (ENSSVLG00005009248) #23	GUCA1B (ENSSVLG00005009219) #24	MRPS10 (ENSSVLG00005009185) #25	TRERF1 (ENSSVLG00005008763) #27	ENSSVLG00005008700	ENSSVLG00005008679	UBR2 (ENSSVLG00005008573) #28	PRPH2 (ENSSVLG00005008515) #29	TBCC (ENSSVLG00005008498) #30	BICRAL (ENSSVLG00005008432) #31	ENSSVLG00005008408 #32	CNPY3 (ENSSVLG00005008168) #34	GNMT (ENSSVLG00005008120) #35	PEX6 (ENSSVLG00005008076) #36	PPP2R5D (ENSSVLG00005007937) #37
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Myomorpha	ANCESTRAL SPECIES	11	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.p #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Muroidea	ANCESTRAL SPECIES	42	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.p #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00900000143235	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.p #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Cricetidae	ANCESTRAL SPECIES	9	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241.i #18	ENSGT00940000160743 #19	ENSGT00390000017567.g #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00900000143235	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.p #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Cricetinae	ANCESTRAL SPECIES	28	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241.i #18	ENSGT00940000160743 #19	ENSGT00390000017567.g #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00900000143235	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.p #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Golden Hamster	MODERN SPECIES	649	1700067P10Rik (ENSMAUG00000015408)	1700122O11Rik (ENSMAUG00000015368)	Foxp4 (ENSMAUG00000012077) #9	ENSMAUG00000010957	Mdfi (ENSMAUG00000013318) #10	Tfeb (ENSMAUG00000012025) #11	Pgc (ENSMAUG00000009628) #12	Frs3 (ENSMAUG00000014355) #13	Prickle4 (ENSMAUG00000013903) #15	Usp49 (ENSMAUG00000012217) #16	Med20 (ENSMAUG00000011361) #17	Bysl (ENSMAUG00000010845) #18	Ccnd3 (ENSMAUG00000010374) #19	Taf8 (ENSMAUG00000000242) #20	AI661453 (ENSMAUG00000019106) #21	ENSMAUG00000014964 #22	Guca1a (ENSMAUG00000014252) #23	Guca1b (ENSMAUG00000012246) #24	Mrps10 (ENSMAUG00000018141) #25	Trerf1 (ENSMAUG00000016098) #27	Ubr2 (ENSMAUG00000009976) #28	Tbcc (ENSMAUG00000001324) #30	ENSMAUG00000014668	Bicral (ENSMAUG00000014344) #31	Rpl7l1 (ENSMAUG00000010525) #32	2310039H08Rik (ENSMAUG00000010383)	Ptcra (ENSMAUG00000017220) #33	Cnpy3 (ENSMAUG00000017045) #34	Gnmt (ENSMAUG00000016515) #35	Pex6 (ENSMAUG00000015976) #36	Ppp2r5d (ENSMAUG00000010413) #37
Chinese hamster chok1gshd	MODERN SPECIES	184	Mtch1 (ENSCGRG00001011402)	Pi16 (ENSCGRG00001007606)	BC004004 (ENSCGRG00001023827)	Ppil1 (ENSCGRG00001023664)	Cpne5 (ENSCGRG00001022541)	Rab44 (ENSCGRG00001019434)	Cdkn1a (ENSCGRG00001016153)	ENSCGRG00001014666	Stk38 (ENSCGRG00001013681)	Kctd20 (ENSCGRG00001012722)	ENSCGRG00001010109 #18	ENSCGRG00001006626 #18	Ccnd3 (ENSCGRG00001003998) #19	Taf8 (ENSCGRG00001002329) #20	ENSCGRG00001000427	1700001C19Rik (ENSCGRG00001013888) #22	Guca1a (ENSCGRG00001013312) #23	Guca1b (ENSCGRG00001012958) #24	Mrps10 (ENSCGRG00001007617) #25	Trerf1 (ENSCGRG00001001250) #27	Ubr2 (ENSCGRG00001005446) #28	Prph2 (ENSCGRG00001017570) #29	Tbcc (ENSCGRG00001012387) #30	Bicral (ENSCGRG00001000750) #31	Rpl7l1 (ENSCGRG00001023262) #32	2310039H08Rik (ENSCGRG00001002644)	Ptcra (ENSCGRG00001020848) #33	Cnpy3 (ENSCGRG00001024003) #34	Gnmt (ENSCGRG00001020404) #35	Pex6 (ENSCGRG00001014931) #36	ENSCGRG00001011102 #37
Cricetidae_B	ANCESTRAL SPECIES	32	ENSGT00680000101580	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241.i #18	ENSGT00940000160743 #19	ENSGT00390000017567.h #20	ENSGT00390000017567.g #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.p #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37
Prairie vole	MODERN SPECIES	352	1700122O11Rik (ENSMOCG00000014775)	Foxp4 (ENSMOCG00000021065) #9	Mdfi (ENSMOCG00000018141) #10	Tfeb (ENSMOCG00000001065) #11	Pgc (ENSMOCG00000010583) #12	Frs3 (ENSMOCG00000007370) #13	Prickle4 (ENSMOCG00000003655) #15	Tomm6 (ENSMOCG00000008944) #14	Usp49 (ENSMOCG00000007999) #16	Med20 (ENSMOCG00000013536) #17	Bysl (ENSMOCG00000002210) #18	Ccnd3 (ENSMOCG00000013065) #19	ENSMOCG00000021707	Taf8 (ENSMOCG00000022773) #20	AI661453 (ENSMOCG00000017972) #21	ENSMOCG00000015861 #22	Guca1a (ENSMOCG00000012937) #23	Guca1b (ENSMOCG00000015159) #24	Mrps10 (ENSMOCG00000012423) #25	Trerf1 (ENSMOCG00000006782) #27	Ubr2 (ENSMOCG00000011858) #28	Prph2 (ENSMOCG00000013387) #29	Tbcc (ENSMOCG00000004719) #30	Bicral (ENSMOCG00000011653) #31	Rpl7l1 (ENSMOCG00000020093) #32	Ptcra (ENSMOCG00000013331) #33	Cnpy3 (ENSMOCG00000022685) #34	ENSMOCG00000004686 #35	Pex6 (ENSMOCG00000001645) #36	Ppp2r5d (ENSMOCG00000019501) #37	ENSMOCG00000010358
Northern American deer mouse	MODERN SPECIES	13	1700122O11Rik (ENSPEMG00000001711)	Foxp4 (ENSPEMG00000022403) #9	Mdfi (ENSPEMG00000023317) #10	Tfeb (ENSPEMG00000023738) #11	Pgc (ENSPEMG00000024008) #12	Frs3 (ENSPEMG00000016427) #13	Prickle4 (ENSPEMG00000010462) #15	Tomm6 (ENSPEMG00000026396) #14	Usp49 (ENSPEMG00000003741) #16	ENSPEMG00000029127	Med20 (ENSPEMG00000006688) #17	Bysl (ENSPEMG00000022283) #18	ENSPEMG00000026066 #19	ENSPEMG00000023347 #20	AI661453 (ENSPEMG00000008630) #21	ENSPEMG00000023958 #22	Guca1a (ENSPEMG00000002406) #23	Guca1b (ENSPEMG00000020343) #24	Mrps10 (ENSPEMG00000021650) #25	Trerf1 (ENSPEMG00000015708) #27	Ubr2 (ENSPEMG00000009594) #28	Prph2 (ENSPEMG00000025130) #29	Tbcc (ENSPEMG00000000808) #30	Bicral (ENSPEMG00000014823) #31	Rpl7l1 (ENSPEMG00000000965) #32	ENSPEMG00000031400	ENSPEMG00000025306	Ptcra (ENSPEMG00000009914) #33	Cnpy3 (ENSPEMG00000013516) #34	Gnmt (ENSPEMG00000011330) #35	Pex6 (ENSPEMG00000001714) #36
Murinae	ANCESTRAL SPECIES	9	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00900000143235	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.p #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Mus	ANCESTRAL SPECIES	16	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00900000143235	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.p #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Mus_A	ANCESTRAL SPECIES	10	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626.e #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743.m #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00900000143235	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.p #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Mus_B	ANCESTRAL SPECIES	9	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626.e #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743.m #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00900000143235	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.p #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Mus_C	ANCESTRAL SPECIES	9	ENSGT01030000234811	ENSGT00680000101580	ENSGT00940000158700 #9	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626.e #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376.r #14	ENSGT00940000157997 #16	ENSGT00390000002060 #17	ENSGT00390000007241 #18	ENSGT00940000160743.m #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00900000143235	ENSGT00940000159766 #31	ENSGT00950000182878.b.b.p #32	ENSGT00440000034488	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36
Steppe mouse	MODERN SPECIES	3015	1700122O11Rik (ENSMSIG00000031759)	Foxp4 (ENSMSIG00000031750) #9	Mdfi (ENSMSIG00000031746) #10	Tfeb (ENSMSIG00000031743) #11	ENSMSIG00000031742 #12	Frs3 (ENSMSIG00000031741) #13	Prickle4 (ENSMSIG00000031740) #15	Tomm6 (ENSMSIG00000031739) #14	ENSMSIG00000031738	Usp49 (ENSMSIG00000031735) #16	Med20 (ENSMSIG00000031732) #17	Bysl (ENSMSIG00000031729) #18	Ccnd3 (ENSMSIG00000031726) #19	Taf8 (ENSMSIG00000031720) #20	AI661453 (ENSMSIG00000031717) #21	1700001C19Rik (ENSMSIG00000031712) #22	Guca1b (ENSMSIG00000031708) #24	ENSMSIG00000031705 #25	Trerf1 (ENSMSIG00000031638) #27	ENSMSIG00000031635	ENSMSIG00000031634	Ubr2 (ENSMSIG00000031624) #28	Prph2 (ENSMSIG00000031620) #29	Tbcc (ENSMSIG00000031618) #30
spretus	MODERN SPECIES	8	Foxp4 (MGP_SPRETEiJ_G0022626) #9	Mdfi (MGP_SPRETEiJ_G0022625) #10	Tfeb (MGP_SPRETEiJ_G0022624) #11	Pgc (MGP_SPRETEiJ_G0022623) #12	Frs3 (MGP_SPRETEiJ_G0022622) #13	MGP_SPRETEiJ_G0022621 #15	MGP_SPRETEiJ_G0022620 #15	Tomm6 (MGP_SPRETEiJ_G0022619) #14	Usp49 (MGP_SPRETEiJ_G0022618) #16	MGP_SPRETEiJ_G0022617 #17	Med20 (MGP_SPRETEiJ_G0022616) #17	Bysl (MGP_SPRETEiJ_G0022615) #18	Ccnd3 (MGP_SPRETEiJ_G0022614) #19	Taf8 (MGP_SPRETEiJ_G0022613) #20	MGP_SPRETEiJ_G0022612	1700001C19Rik (MGP_SPRETEiJ_G0022611) #22	Guca1a (MGP_SPRETEiJ_G0022610) #23	Guca1b (MGP_SPRETEiJ_G0022609) #24	Mrps10 (MGP_SPRETEiJ_G0022608) #25	MGP_SPRETEiJ_G0022607	Ubr2 (MGP_SPRETEiJ_G0022606) #28	Prph2 (MGP_SPRETEiJ_G0022605) #29	Tbcc (MGP_SPRETEiJ_G0022604) #30	MGP_SPRETEiJ_G0022603	Bicral (MGP_SPRETEiJ_G0022602) #31	Rpl7l1 (MGP_SPRETEiJ_G0022601) #32	2310039H08Rik (MGP_SPRETEiJ_G0022600)	Ptcra (MGP_SPRETEiJ_G0022599) #33	Cnpy3 (MGP_SPRETEiJ_G0022598) #34	Gnmt (MGP_SPRETEiJ_G0022597) #35	Pex6 (MGP_SPRETEiJ_G0022596) #36
Mouse	MODERN SPECIES	8	1700067P10Rik (ENSMUSG00000021545)	1700122O11Rik (ENSMUSG00000094928)	Foxp4 (ENSMUSG00000023991) #9	Mdfi (ENSMUSG00000032717) #10	Tfeb (ENSMUSG00000023990) #11	Pgc (ENSMUSG00000023987) #12	Frs3 (ENSMUSG00000023266) #13	Prickle4 (ENSMUSG00000096549) #15	Tomm6 (ENSMUSG00000033475) #14	Usp49 (ENSMUSG00000090115) #16	Med20 (ENSMUSG00000092558) #17	Bysl (ENSMUSG00000023988) #18	Ccnd3 (ENSMUSG00000034165) #19	Taf8 (ENSMUSG00000023980) #20	AI661453 (ENSMUSG00000034382) #21	1700001C19Rik (ENSMUSG00000047150) #22	Guca1a (ENSMUSG00000023982) #23	Guca1b (ENSMUSG00000023979) #24	Mrps10 (ENSMUSG00000034729) #25	Trerf1 (ENSMUSG00000064043) #27	Ubr2 (ENSMUSG00000023977) #28	Prph2 (ENSMUSG00000023978) #29	Tbcc (ENSMUSG00000036430) #30	Bicral (ENSMUSG00000036568) #31	Rpl7l1 (ENSMUSG00000063888) #32	2310039H08Rik (ENSMUSG00000062619)	Ptcra (ENSMUSG00000036858) #33	Cnpy3 (ENSMUSG00000023973) #34	Gnmt (ENSMUSG00000002769) #35	Pex6 (ENSMUSG00000002763) #36	Ppp2r5d (ENSMUSG00000059409) #37
Ryukyu mouse	MODERN SPECIES	8	Foxp4 (MGP_CAROLIEiJ_G0021714) #9	Mdfi (MGP_CAROLIEiJ_G0021713) #10	Tfeb (MGP_CAROLIEiJ_G0021712) #11	Pgc (MGP_CAROLIEiJ_G0021711) #12	Frs3 (MGP_CAROLIEiJ_G0021710) #13	MGP_CAROLIEiJ_G0021709 #15	MGP_CAROLIEiJ_G0021708 #15	Tomm6 (MGP_CAROLIEiJ_G0021707) #14	Usp49 (MGP_CAROLIEiJ_G0021706) #16	MGP_CAROLIEiJ_G0021705 #17	Med20 (MGP_CAROLIEiJ_G0021704) #17	Bysl (MGP_CAROLIEiJ_G0021703) #18	Ccnd3 (MGP_CAROLIEiJ_G0021702) #19	Taf8 (MGP_CAROLIEiJ_G0021701) #20	AI661453 (MGP_CAROLIEiJ_G0021700) #21	1700001C19Rik (MGP_CAROLIEiJ_G0021699) #22	Guca1a (MGP_CAROLIEiJ_G0021698) #23	MGP_CAROLIEiJ_G0021697 #24	Mrps10 (MGP_CAROLIEiJ_G0021696) #25	MGP_CAROLIEiJ_G0021695	Ubr2 (MGP_CAROLIEiJ_G0021694) #28	Prph2 (MGP_CAROLIEiJ_G0021693) #29	Tbcc (MGP_CAROLIEiJ_G0021692) #30	MGP_CAROLIEiJ_G0021691	Bicral (MGP_CAROLIEiJ_G0021690) #31	Rpl7l1 (MGP_CAROLIEiJ_G0021689) #32	2310039H08Rik (MGP_CAROLIEiJ_G0021688)	Ptcra (MGP_CAROLIEiJ_G0021687) #33	Cnpy3 (MGP_CAROLIEiJ_G0021686) #34	Gnmt (MGP_CAROLIEiJ_G0021685) #35	Pex6 (MGP_CAROLIEiJ_G0021684) #36
Shrew mouse	MODERN SPECIES	9	Foxp4 (MGP_PahariEiJ_G0020704) #9	Mdfi (MGP_PahariEiJ_G0020703) #10	Tfeb (MGP_PahariEiJ_G0020702) #11	Pgc (MGP_PahariEiJ_G0020701) #12	Frs3 (MGP_PahariEiJ_G0020700) #13	MGP_PahariEiJ_G0020699 #15	MGP_PahariEiJ_G0020698 #15	Tomm6 (MGP_PahariEiJ_G0020697) #14	Usp49 (MGP_PahariEiJ_G0020696) #16	MGP_PahariEiJ_G0020695 #17	Med20 (MGP_PahariEiJ_G0020694) #17	Bysl (MGP_PahariEiJ_G0020693) #18	Ccnd3 (MGP_PahariEiJ_G0020692) #19	Taf8 (MGP_PahariEiJ_G0020691) #20	AI661453 (MGP_PahariEiJ_G0020690) #21	MGP_PahariEiJ_G0020689 #22	Guca1a (MGP_PahariEiJ_G0020688) #23	MGP_PahariEiJ_G0020687 #24	Mrps10 (MGP_PahariEiJ_G0020686) #25	MGP_PahariEiJ_G0020685	Ubr2 (MGP_PahariEiJ_G0020684) #28	Prph2 (MGP_PahariEiJ_G0020683) #29	Tbcc (MGP_PahariEiJ_G0020682) #30	MGP_PahariEiJ_G0020681 #31	Rpl7l1 (MGP_PahariEiJ_G0020680) #32	2310039H08Rik (MGP_PahariEiJ_G0020679)	Ptcra (MGP_PahariEiJ_G0020678) #33	Cnpy3 (MGP_PahariEiJ_G0020677) #34	Gnmt (MGP_PahariEiJ_G0020676) #35	Pex6 (MGP_PahariEiJ_G0020675) #36	Ppp2r5d (MGP_PahariEiJ_G0020674) #37
Rat	MODERN SPECIES	19	ENSRNOG00000066209	LOC680955 (ENSRNOG00000040095)	LOC100911489 (ENSRNOG00000067280)	Foxp4 (ENSRNOG00000022804) #9	Mdfi (ENSRNOG00000014987) #10	Tfeb (ENSRNOG00000014666) #11	Pgc (ENSRNOG00000014492) #12	Frs3 (ENSRNOG00000014328) #13	Prickle4 (ENSRNOG00000014180) #15	Usp49 (ENSRNOG00000013866) #16	Med20 (ENSRNOG00000013852) #17	Bysl (ENSRNOG00000049121) #18	Ccnd3 (ENSRNOG00000050258) #19	Taf8 (ENSRNOG00000015249) #20	C9h6orf132 (ENSRNOG00000015297) #21	LOC100912849 (ENSRNOG00000015386) #22	Guca1a (ENSRNOG00000015402) #23	Guca1b (ENSRNOG00000015623) #24	Mrps10 (ENSRNOG00000022609) #25	Trerf1 (ENSRNOG00000022598) #27	Ubr2 (ENSRNOG00000015813) #28	Prph2 (ENSRNOG00000068377) #29	Tbcc (ENSRNOG00000048291) #30	Bicral (ENSRNOG00000016229) #31	Rpl7l1 (ENSRNOG00000016269) #32	LOC681367 (ENSRNOG00000046871)	Ptcra (ENSRNOG00000042581) #33	Cnpy3 (ENSRNOG00000016315) #34	Gnmt (ENSRNOG00000016349) #35	Pex6 (ENSRNOG00000016655) #36	Ppp2r5d (ENSRNOG00000016849) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	504		ENSNGAG00000012918	Foxp4 (ENSNGAG00000019301) #9	Mdfi (ENSNGAG00000019621) #10	Tfeb (ENSNGAG00000000739) #11	Pgc (ENSNGAG00000009141) #12	Frs3 (ENSNGAG00000017744) #13	Prickle4 (ENSNGAG00000006023) #15	Tomm6 (ENSNGAG00000016016) #14	Usp49 (ENSNGAG00000017308) #16	Med20 (ENSNGAG00000001431) #17	Bysl (ENSNGAG00000005496) #18	Ccnd3 (ENSNGAG00000007233) #19	Taf8 (ENSNGAG00000001080) #20	ENSNGAG00000015126	ENSNGAG00000019278 #22	Guca1a (ENSNGAG00000005372) #23	ENSNGAG00000005992 #24	Trerf1 (ENSNGAG00000008949) #27
Lesser Egyptian jerboa	MODERN SPECIES	41	Treml2 (ENSJJAG00000020018) ##8	Trem1 (ENSJJAG00000002311)	Foxp4 (ENSJJAG00000012682) #9	Mdfi (ENSJJAG00000011462) #10	Tfeb (ENSJJAG00000006884) #11	Pgc (ENSJJAG00000020186) #12	Frs3 (ENSJJAG00000016510) #13	ENSJJAG00000009681 #15	Tomm6 (ENSJJAG00000014090) #14	Usp49 (ENSJJAG00000010810) #16	Med20 (ENSJJAG00000023488) #17	ENSJJAG00000023129 #18	Ccnd3 (ENSJJAG00000020109) #19	Taf8 (ENSJJAG00000014681) #20	ENSJJAG00000014868	ENSJJAG00000012922 #22	Guca1a (ENSJJAG00000021759) #23	Guca1b (ENSJJAG00000013876) #24	Mrps10 (ENSJJAG00000009159) #25	Trerf1 (ENSJJAG00000017829) #27	Ubr2 (ENSJJAG00000014743) #28	Prph2 (ENSJJAG00000014637) #29	Tbcc (ENSJJAG00000009303) #30	Bicral (ENSJJAG00000023549) #31	Rpl7l1 (ENSJJAG00000023723) #32	Ptcra (ENSJJAG00000003881) #33	Cnpy3 (ENSJJAG00000006773) #34	ENSJJAG00000001038 #35	Pex6 (ENSJJAG00000005949) #36	Ppp2r5d (ENSJJAG00000011011) #37	Mea1 (ENSJJAG00000022932)
Kangaroo rat	MODERN SPECIES	363	Treml1 (ENSDORG00000002310)	Trem2 (ENSDORG00000002311)	ENSDORG00000012047 ##8	Foxp4 (ENSDORG00000015708) #9	Mdfi (ENSDORG00000015709) #10	ENSDORG00000024734 #11	Pgc (ENSDORG00000007516) #12	Prickle4 (ENSDORG00000001459) #15	ENSDORG00000001463 #14	ENSDORG00000025661 #16	Med20 (ENSDORG00000010967) #17	Bysl (ENSDORG00000010968) #18	Ccnd3 (ENSDORG00000025933) #19	Taf8 (ENSDORG00000012970) #20	ENSDORG00000011144	ENSDORG00000005727 #22	Guca1a (ENSDORG00000023559) #23	Guca1b (ENSDORG00000002076) #24	Mrps10 (ENSDORG00000002081) #25	Trerf1 (ENSDORG00000004758) #27	Ubr2 (ENSDORG00000011936) #28	Prph2 (ENSDORG00000011952) #29	Bicral (ENSDORG00000012173) #31	Rpl7l1 (ENSDORG00000012175) #32	Cnpy3 (ENSDORG00000012177) #34	Gnmt (ENSDORG00000012178) #35	Pex6 (ENSDORG00000012179) #36	Ppp2r5d (ENSDORG00000012182) #37	Mea1 (ENSDORG00000012184)	Klhdc3 (ENSDORG00000012185)	Rrp36 (ENSDORG00000012186)
Lagomorpha	ANCESTRAL SPECIES	2	ENSGT00940000153835.a.a ##8	ENSGT00470000042299	ENSGT01030000234811	ENSGT00940000160187 #10	ENSGT00940000159691 #11	ENSGT00940000160626 #12	ENSGT00940000159495 #13	ENSGT00940000161789 #15	ENSGT00390000002376 #14	ENSGT00940000157997 #16	ENSGT00390000002060.h #17	ENSGT00390000007241 #18	ENSGT00940000160743 #19	ENSGT00390000017567 #20	ENSGT00940000163431 #21	ENSGT00390000014226 #22	ENSGT00940000160607 #23	ENSGT00940000157530.a #24	ENSGT00390000009045 #25	ENSGT00940000160303.b #27	ENSGT00950000183075.a.a.a.a #28	ENSGT00940000157303 #29	ENSGT00940000162058 #30	ENSGT00940000159766 #31	ENSGT00950000182878.b.b #32	ENSGT00390000007712 #33	ENSGT00390000014072.A #34	ENSGT00390000006845 #35	ENSGT00550000074953 #36	ENSGT01030000234620.a.a.a.b #37	ENSGT00390000016927
Rabbit	MODERN SPECIES	3	TREML2 (ENSOCUG00000007268) ##8	ENSOCUG00000011397	ENSOCUG00000029152	ENSOCUG00000033208	MDFI (ENSOCUG00000012322) #10	TFEB (ENSOCUG00000027474) #11	FRS3 (ENSOCUG00000000507) #13	PRICKLE4 (ENSOCUG00000000509) #15	TOMM6 (ENSOCUG00000022642) #14	USP49 (ENSOCUG00000021251) #16	MED20 (ENSOCUG00000017562) #17	ENSOCUG00000017567 #18	CCND3 (ENSOCUG00000017573) #19	TAF8 (ENSOCUG00000009876) #20	C6orf132 (ENSOCUG00000023491) #21	ENSOCUG00000025813 #22	GUCA1A (ENSOCUG00000016325) #23	GUCA1B (ENSOCUG00000024944) #24	ENSOCUG00000038254	MRPS10 (ENSOCUG00000016697) #25	TRERF1 (ENSOCUG00000016703) #27	UBR2 (ENSOCUG00000017960) #28	ENSOCUG00000027455	PRPH2 (ENSOCUG00000017963) #29	ENSOCUG00000022401	ENSOCUG00000017964 #30	BICRAL (ENSOCUG00000013438) #31	ENSOCUG00000003844 #32	CNPY3 (ENSOCUG00000027862) #34	ENSOCUG00000003850 #33	GNMT (ENSOCUG00000003858) #35
Pika	MODERN SPECIES	6647														NFE2L2 (ENSOPRG00000013934)	TAF8 (ENSOPRG00000013945) #20	GUCA1ANB (ENSOPRG00000018852) #22	GUCA1A (ENSOPRG00000013964) #23