Euarchontoglires_A ANCESTRAL SPECIES 9 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.ab #14 ENSGT00520000060950 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194 ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292 ENSGT00940000160278 Glires ANCESTRAL SPECIES 8 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.ab #14 ENSGT00520000060950 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194 ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292 ENSGT00940000160278 Rodentia ANCESTRAL SPECIES 13 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.ab #14 ENSGT00520000060950 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194 ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292 ENSGT00940000160278 Rodentia_B ANCESTRAL SPECIES 30 ENSGT00940000158625 #8 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.ab #14 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194 ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292 ENSGT00940000160278 Kangaroo rat MODERN SPECIES 389 Manba (ENSDORG00000006758) #7 Nfkb1 (ENSDORG00000007447) #8 Slc39a8 (ENSDORG00000003665) #9 Bank1 (ENSDORG00000002760) #10 Ppp3ca (ENSDORG00000002043) #11 ENSDORG00000001815 #12 Ddit4l (ENSDORG00000001876) #13 ENSDORG00000028258 #14 Dnajb14 (ENSDORG00000015503) #15 ENSDORG00000015501 #16 Dapp1 (ENSDORG00000015497) #17 1110002E22Rik (ENSDORG00000023706) #18 Mttp (ENSDORG00000012016) #19 Trmt10a (ENSDORG00000012015) #20 ENSDORG00000012014 #21 Adh7 (ENSDORG00000010201) #22 Adh1 (ENSDORG00000027739) #23 ENSDORG00000028963 #24 Adh6a (ENSDORG00000026496) #25 Myomorpha ANCESTRAL SPECIES 42 ENSGT00390000001670 #7 ENSGT00940000158625 #8 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194.dd ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292 Muroidea ANCESTRAL SPECIES 53 ENSGT00390000001670 #7 ENSGT00940000158625 #8 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194.dd ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292 Muroidea_A ANCESTRAL SPECIES 5 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00860000135718 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.ab #14 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194.dd ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292 ENSGT00940000162684 Cricetidae ANCESTRAL SPECIES 6 ENSGT00940000158625 #8 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00860000135718 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194.dd ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292 ENSGT00940000162684 Cricetinae ANCESTRAL SPECIES 12 ENSGT00390000001670 #7 ENSGT00940000158625 #8 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292 ENSGT00940000162684 ENSGT00940000163522.A.h Chinese hamster chok1gshd MODERN SPECIES 66 ENSCGRG00001017651 ENSCGRG00001012406 Slc39a8 (ENSCGRG00001002146) #9 ENSCGRG00001010228 #10 Ppp3ca (ENSCGRG00001010461) #11 ENSCGRG00001020585 #12 Ddit4l (ENSCGRG00001020883) #13 H2az1 (ENSCGRG00001012053) ##14 Dnajb14 (ENSCGRG00001020153) #15 Lamtor3 (ENSCGRG00001012576) #16 Dapp1 (ENSCGRG00001013080) #17 1110002E22Rik (ENSCGRG00001005404) #18 Mttp (ENSCGRG00001013195) #19 Trmt10a (ENSCGRG00001020257) #20 4930579F01Rik (ENSCGRG00001000415) #21 Adh7 (ENSCGRG00001008109) #22 ENSCGRG00001017351 #23 ENSCGRG00001000595 #23 Adh6a (ENSCGRG00001013383) #25 ENSCGRG00001012224 #25 Adh6b (ENSCGRG00001011022) Adh5 (ENSCGRG00001000437) Metap1 (ENSCGRG00001002302) ENSCGRG00001000181 Tspan5 (ENSCGRG00001001260) Rap1gds1 (ENSCGRG00001017066) ENSCGRG00001006395 Stpg2 (ENSCGRG00001011952) Pdha2 (ENSCGRG00001012024) Unc5c (ENSCGRG00001024324) Bmpr1b (ENSCGRG00001019865) Cricetidae_B ANCESTRAL SPECIES 3 ENSGT00940000158625 #8 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00860000135718 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194.dd ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292 ENSGT00940000162684 Northern American deer mouse MODERN SPECIES 19 Bank1 (ENSPEMG00000021709) #10 Ppp3ca (ENSPEMG00000021182) #11 ENSPEMG00000030107 ENSPEMG00000027547 Emcn (ENSPEMG00000020902) #12 Ddit4l (ENSPEMG00000029705) #13 ENSPEMG00000025829 H2az1 (ENSPEMG00000011802) ##14 Dnajb14 (ENSPEMG00000000027) #15 Lamtor3 (ENSPEMG00000028536) #16 Dapp1 (ENSPEMG00000018447) #17 1110002E22Rik (ENSPEMG00000016355) #18 Mttp (ENSPEMG00000013372) #19 Trmt10a (ENSPEMG00000011113) #20 4930579F01Rik (ENSPEMG00000006959) #21 Adh7 (ENSPEMG00000003478) #22 Adh6a (ENSPEMG00000000326) #25 Adh6b (ENSPEMG00000006239) ENSPEMG00000029521 Adh4 (ENSPEMG00000017427) Adh5 (ENSPEMG00000024078) Metap1 (ENSPEMG00000023712) ENSPEMG00000023956 Tspan5 (ENSPEMG00000023594) Rap1gds1 (ENSPEMG00000015670) Stpg2 (ENSPEMG00000022992) Pdha2 (ENSPEMG00000015169) Unc5c (ENSPEMG00000020337) Bmpr1b (ENSPEMG00000012954) Pdlim5 (ENSPEMG00000000844) Gbp5 (ENSPEMG00000017654) Prairie vole MODERN SPECIES 8 Slc39a8 (ENSMOCG00000021217) #9 Bank1 (ENSMOCG00000006319) #10 Ppp3ca (ENSMOCG00000016554) #11 ENSMOCG00000019233 #12 ENSMOCG00000020706 Ddit4l (ENSMOCG00000021879) #13 ENSMOCG00000000177 ##14 Dnajb14 (ENSMOCG00000002333) #15 Lamtor3 (ENSMOCG00000007725) #16 Dapp1 (ENSMOCG00000012150) #17 ENSMOCG00000019947 1110002E22Rik (ENSMOCG00000022102) #18 Mttp (ENSMOCG00000004457) #19 ENSMOCG00000017219 #20 4930579F01Rik (ENSMOCG00000012821) #21 Adh7 (ENSMOCG00000015767) #22 ENSMOCG00000000449 #23 ENSMOCG00000000858 #23 ENSMOCG00000013547 #23 ENSMOCG00000019852 #23 Adh6a (ENSMOCG00000016098) #25 ENSMOCG00000018561 #25 ENSMOCG00000015411 Adh4 (ENSMOCG00000020502) ENSMOCG00000006666 ENSMOCG00000012187 Eif4e (ENSMOCG00000016783) Tspan5 (ENSMOCG00000008249) Rap1gds1 (ENSMOCG00000013253) ENSMOCG00000010560 Stpg2 (ENSMOCG00000014639) Murinae ANCESTRAL SPECIES 5 ENSGT00940000158625 #8 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00860000135718 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.ab #14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194.dd ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292 ENSGT00940000162684 Mus ANCESTRAL SPECIES 7 ENSGT00940000158625 #8 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00860000135718 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.ab #14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194.dd ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292 ENSGT00940000162684 Mus_A ANCESTRAL SPECIES 9 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00860000135718 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.ab #14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00860000136186 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194.dd ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292.j ENSGT00940000162684 Mus_B ANCESTRAL SPECIES 8 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00860000135718 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00860000136186 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194.dd ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292.j ENSGT00940000162684 Mus_C ANCESTRAL SPECIES 6 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00860000135718 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.ab #14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00860000136186 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194.dd ENSGT00940000155429.a ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292.j spretus MODERN SPECIES 12 Bank1 (MGP_SPRETEiJ_G0026618) #10 Ppp3ca (MGP_SPRETEiJ_G0026619) #11 Emcn (MGP_SPRETEiJ_G0026620) #12 MGP_SPRETEiJ_G0026621 Ddit4l (MGP_SPRETEiJ_G0026622) #13 MGP_SPRETEiJ_G0026623 #14 Dnajb14 (MGP_SPRETEiJ_G0026624) #15 MGP_SPRETEiJ_G0026625 #16 MGP_SPRETEiJ_G0026626 #16 Dapp1 (MGP_SPRETEiJ_G0026627) #17 MGP_SPRETEiJ_G0026628 1110002E22Rik (MGP_SPRETEiJ_G0026629) #18 Mttp (MGP_SPRETEiJ_G0026630) #19 Trmt10a (MGP_SPRETEiJ_G0026631) #20 4930579F01Rik (MGP_SPRETEiJ_G0026632) #21 Adh7 (MGP_SPRETEiJ_G0026633) #22 Adh1 (MGP_SPRETEiJ_G0026634) #23 Adh6a (MGP_SPRETEiJ_G0026635) #25 Adh4 (MGP_SPRETEiJ_G0026636) Adh5 (MGP_SPRETEiJ_G0026637) Metap1 (MGP_SPRETEiJ_G0026638) Eif4e (MGP_SPRETEiJ_G0026639) MGP_SPRETEiJ_G0026640 Rap1gds1 (MGP_SPRETEiJ_G0026641) Stpg2 (MGP_SPRETEiJ_G0026642) Pdha2 (MGP_SPRETEiJ_G0026643) Unc5c (MGP_SPRETEiJ_G0026644) Bmpr1b (MGP_SPRETEiJ_G0026645) Pdlim5 (MGP_SPRETEiJ_G0026646) Gbp5 (MGP_SPRETEiJ_G0026647) Gbp7 (MGP_SPRETEiJ_G0026648) Steppe mouse MODERN SPECIES 3146 Trmt10a (ENSMSIG00000009963) #20 ENSMSIG00000010020 #21 Adh7 (ENSMSIG00000010180) #22 ENSMSIG00000010215 Adh1 (ENSMSIG00000010226) #23 Adh6a (ENSMSIG00000010237) #25 Adh6b (ENSMSIG00000010269) Adh4 (ENSMSIG00000010311) ENSMSIG00000010367 ENSMSIG00000010403 Metap1 (ENSMSIG00000010438) ENSMSIG00000010463 ENSMSIG00000010474 ENSMSIG00000010529 ENSMSIG00000010544 Rap1gds1 (ENSMSIG00000010660) Stpg2 (ENSMSIG00000010911) Mouse MODERN SPECIES 12 Manba (ENSMUSG00000028164) #7 Nfkb1 (ENSMUSG00000028163) #8 Slc39a8 (ENSMUSG00000053897) #9 Bank1 (ENSMUSG00000037922) #10 Ppp3ca (ENSMUSG00000028161) #11 Emcn (ENSMUSG00000054690) #12 Ddit4l (ENSMUSG00000046818) #13 H2az1 (ENSMUSG00000037894) ##14 Dnajb14 (ENSMUSG00000074212) #15 Lamtor3 (ENSMUSG00000091512) #16 Dapp1 (ENSMUSG00000028159) #17 1110002E22Rik (ENSMUSG00000090066) #18 Mttp (ENSMUSG00000028158) #19 Trmt10a (ENSMUSG00000004127) #20 4930579F01Rik (ENSMUSG00000012042) #21 Adh7 (ENSMUSG00000055301) #22 Adh1 (ENSMUSG00000074207) #23 Adh6a (ENSMUSG00000053054) #25 Adh6b (ENSMUSG00000074206) Adh4 (ENSMUSG00000037797) Adh5 (ENSMUSG00000028138) Metap1 (ENSMUSG00000005813) Eif4e (ENSMUSG00000028156) Tspan5 (ENSMUSG00000028152) Rap1gds1 (ENSMUSG00000028149) Stpg2 (ENSMUSG00000047940) Pdha2 (ENSMUSG00000047674) Unc5c (ENSMUSG00000059921) Bmpr1b (ENSMUSG00000052430) Pdlim5 (ENSMUSG00000028273) Gbp5 (ENSMUSG00000105504) Ryukyu mouse MODERN SPECIES 12 Slc39a8 (MGP_CAROLIEiJ_G0025662) #9 Bank1 (MGP_CAROLIEiJ_G0025663) #10 Ppp3ca (MGP_CAROLIEiJ_G0025664) #11 Emcn (MGP_CAROLIEiJ_G0025665) #12 Ddit4l (MGP_CAROLIEiJ_G0025667) #13 MGP_CAROLIEiJ_G0025668 #14 Dnajb14 (MGP_CAROLIEiJ_G0025669) #15 MGP_CAROLIEiJ_G0025670 #16 MGP_CAROLIEiJ_G0025671 #16 Dapp1 (MGP_CAROLIEiJ_G0025672) #17 MGP_CAROLIEiJ_G0025673 1110002E22Rik (MGP_CAROLIEiJ_G0025674) #18 Mttp (MGP_CAROLIEiJ_G0025675) #19 Trmt10a (MGP_CAROLIEiJ_G0025676) #20 MGP_CAROLIEiJ_G0025677 #21 Adh7 (MGP_CAROLIEiJ_G0025678) #22 Adh1 (MGP_CAROLIEiJ_G0025679) #23 Adh6a (MGP_CAROLIEiJ_G0025680) #25 MGP_CAROLIEiJ_G0025681 Metap1 (MGP_CAROLIEiJ_G0025683) Eif4e (MGP_CAROLIEiJ_G0025684) Tspan5 (MGP_CAROLIEiJ_G0025685) Rap1gds1 (MGP_CAROLIEiJ_G0025686) Stpg2 (MGP_CAROLIEiJ_G0025687) Pdha2 (MGP_CAROLIEiJ_G0025688) Unc5c (MGP_CAROLIEiJ_G0025689) Bmpr1b (MGP_CAROLIEiJ_G0025690) Pdlim5 (MGP_CAROLIEiJ_G0025691) Gbp5 (MGP_CAROLIEiJ_G0025692) Gbp7 (MGP_CAROLIEiJ_G0025693) MGP_CAROLIEiJ_G0025694 Shrew mouse MODERN SPECIES 17 Bank1 (MGP_PahariEiJ_G0027112) #10 Ppp3ca (MGP_PahariEiJ_G0027113) #11 MGP_PahariEiJ_G0027114 #12 MGP_PahariEiJ_G0027115 Ddit4l (MGP_PahariEiJ_G0027116) #13 MGP_PahariEiJ_G0027117 #14 Dnajb14 (MGP_PahariEiJ_G0027118) #15 MGP_PahariEiJ_G0027119 #16 MGP_PahariEiJ_G0027120 #16 Dapp1 (MGP_PahariEiJ_G0027121) #17 MGP_PahariEiJ_G0027122 1110002E22Rik (MGP_PahariEiJ_G0027123) #18 Mttp (MGP_PahariEiJ_G0027124) #19 MGP_PahariEiJ_G0027125 #20 MGP_PahariEiJ_G0027126 #21 Adh7 (MGP_PahariEiJ_G0027127) #22 Adh1 (MGP_PahariEiJ_G0027128) #23 Adh6a (MGP_PahariEiJ_G0027129) #25 Adh4 (MGP_PahariEiJ_G0027130) Adh5 (MGP_PahariEiJ_G0027131) Metap1 (MGP_PahariEiJ_G0027132) MGP_PahariEiJ_G0027133 Tspan5 (MGP_PahariEiJ_G0027134) Rap1gds1 (MGP_PahariEiJ_G0027135) MGP_PahariEiJ_G0027136 Pdha2 (MGP_PahariEiJ_G0027137) Unc5c (MGP_PahariEiJ_G0027138) Bmpr1b (MGP_PahariEiJ_G0027139) Pdlim5 (MGP_PahariEiJ_G0027140) Gbp5 (MGP_PahariEiJ_G0027141) Gbp7 (MGP_PahariEiJ_G0027142) Rat MODERN SPECIES 11 Bank1 (ENSRNOG00000032247) #10 Ppp3ca (ENSRNOG00000009882) #11 Emcn (ENSRNOG00000022910) #12 ENSRNOG00000033088 Ddit4l (ENSRNOG00000010047) #13 H2az1 (ENSRNOG00000010306) ##14 Dnajb14 (ENSRNOG00000060107) #15 Lamtor3 (ENSRNOG00000010552) #16 Dapp1 (ENSRNOG00000010575) #17 Mindy3-ps1 (ENSRNOG00000063704) LOC102555814 (ENSRNOG00000063384) #18 Mttp (ENSRNOG00000010655) #19 Trmt10a (ENSRNOG00000011025) #20 RGD1309170 (ENSRNOG00000024623) #21 ENSRNOG00000068931 Adh7 (ENSRNOG00000032959) #22 Adh6 (ENSRNOG00000012436) #23 Adh6a (ENSRNOG00000012281) #25 Adh1-ps1 (ENSRNOG00000065373) #25 Adh6 (ENSRNOG00000069176) Adh5 (ENSRNOG00000046357) Metap1 (ENSRNOG00000012947) Eif4e (ENSRNOG00000052343) Tspan5 (ENSRNOG00000015913) Rap1gds1 (ENSRNOG00000015987) Stpg2 (ENSRNOG00000023457) ENSRNOG00000069084 Unc5c (ENSRNOG00000029071) Bmpr1b (ENSRNOG00000016289) Pdlim5 (ENSRNOG00000016419) Gbp5 (ENSRNOG00000032240) Rodentia_A ANCESTRAL SPECIES 24 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.`b.a.p ##14 ENSGT00520000060950 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194 ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292 ENSGT00940000160278 ENSGT00910000144252 Hystricomorpha ANCESTRAL SPECIES 38 ENSGT00390000001670 #7 ENSGT00940000158625.l #8 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 Hystricomorpha_a ANCESTRAL SPECIES 34 ENSGT00390000001670 #7 ENSGT00940000158625.l #8 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 Hystricomorpha_b ANCESTRAL SPECIES 52 ENSGT00390000001670 #7 ENSGT00940000158625.l #8 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 Long-tailed chinchilla MODERN SPECIES 203 NFKB1 (ENSCLAG00000002329) #8 SLC39A8 (ENSCLAG00000009861) #9 BANK1 (ENSCLAG00000008606) #10 ENSCLAG00000017911 PPP3CA (ENSCLAG00000009931) #11 ENSCLAG00000002576 #12 ENSCLAG00000002774 #13 ENSCLAG00000002814 ##14 DNAJB14 (ENSCLAG00000002968) #15 LAMTOR3 (ENSCLAG00000003131) #16 DAPP1 (ENSCLAG00000002711) #17 C4orf54 (ENSCLAG00000002925) #18 MTTP (ENSCLAG00000003478) #19 TRMT10A (ENSCLAG00000005261) #20 C4orf17 (ENSCLAG00000002248) #21 ADH7 (ENSCLAG00000002280) #22 ENSCLAG00000002312 #23 ENSCLAG00000002336 #25 ENSCLAG00000002386 Degu MODERN SPECIES 224 MANBA (ENSODEG00000004246) #7 NFKB1 (ENSODEG00000004140) #8 SLC39A8 (ENSODEG00000004017) #9 ENSODEG00000003969 BANK1 (ENSODEG00000003823) #10 PPP3CA (ENSODEG00000003402) #11 ENSODEG00000003228 ENSODEG00000003190 #14 DNAJB14 (ENSODEG00000002881) #15 ENSODEG00000004603 #16 DAPP1 (ENSODEG00000004478) #17 C4orf54 (ENSODEG00000004434) #18 MTTP (ENSODEG00000004277) #19 TRMT10A (ENSODEG00000004213) #20 ENSODEG00000004193 ADH7 (ENSODEG00000004048) #22 ENSODEG00000004024 #23 ENSODEG00000004915 #23 ENSODEG00000004868 #23 ENSODEG00000019149 Sciuridae ANCESTRAL SPECIES 43 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.`b.a.p ##14 ENSGT00520000060950 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194 ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00530000063174.a.j ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292 ENSGT00940000160278 Marmotini ANCESTRAL SPECIES 51 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00530000063652.a.a #13 ENSGT00900000140979.a.a.`b.a.p ##14 ENSGT00520000060950 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000163645 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194 ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 ENSGT00950000182815.a.a.a.a.a ENSGT00940000155919 ENSGT00940000155292 ENSGT00940000160278 ENSGT00910000144252 Marmotini_b ANCESTRAL SPECIES 153 ENSGT00940000158625 #8 ENSGT00940000158926 #9 ENSGT00390000008787.a #10 ENSGT00940000156306 #11 ENSGT00390000012139 #12 ENSGT00530000063652.a.a #13 ENSGT00520000060950 ENSGT00900000140979.a.a.`b.b ##14 ENSGT00940000157887 #15 ENSGT00390000013159 #16 ENSGT00910000144274 #17 ENSGT00730000111645 #18 ENSGT00390000011412 #19 ENSGT00530000063169.a #20 ENSGT00510000048844 #21 ENSGT00940000162708 #22 ENSGT00940000155234.b #23 ENSGT00940000162845 #25 ENSGT00940000162645 ENSGT00940000155196 ENSGT00940000158205 ENSGT00940000154194 ENSGT00940000161376 ENSGT00390000014293.a ENSGT00390000001063 Squirrel MODERN SPECIES 120 MANBA (ENSSTOG00000011457) #7 NFKB1 (ENSSTOG00000011445) #8 SLC39A8 (ENSSTOG00000024568) #9 BANK1 (ENSSTOG00000026537) #10 PPP3CA (ENSSTOG00000011801) #11 EMCN (ENSSTOG00000034020) #12 DDIT4L (ENSSTOG00000010316) #13 ENSSTOG00000023194 ##14 DNAJB14 (ENSSTOG00000021338) #15 LAMTOR3 (ENSSTOG00000010944) #16 DAPP1 (ENSSTOG00000010934) #17 C4orf54 (ENSSTOG00000026836) #18 MTTP (ENSSTOG00000006428) #19 TRMT10A (ENSSTOG00000005064) #20 C4orf17 (ENSSTOG00000013616) #21 ADH7 (ENSSTOG00000006815) #22 ENSSTOG00000019811 #23 ENSSTOG00000026896 #25 ADH4 (ENSSTOG00000029406) ADH5 (ENSSTOG00000006233) METAP1 (ENSSTOG00000006210) EIF4E (ENSSTOG00000002230) ENSSTOG00000010976 PTF1A (ENSSTOG00000022679) ENSSTOG00000019871 ENSSTOG00000013900 ARMC3 (ENSSTOG00000009417) PIP4K2A (ENSSTOG00000001661) SPAG6 (ENSSTOG00000001651) BMI1 (ENSSTOG00000001647) COMMD3 (ENSSTOG00000001638) Arctic ground squirrel MODERN SPECIES 195 SLC39A8 (ENSUPAG00010012485) #9 BANK1 (ENSUPAG00010012544) #10 PPP3CA (ENSUPAG00010012626) #11 ENSUPAG00010012645 ENSUPAG00010012651 EMCN (ENSUPAG00010012658) #12 DDIT4L (ENSUPAG00010012672) #13 ENSUPAG00010012681 ENSUPAG00010012688 ##14 DNAJB14 (ENSUPAG00010012707) #15 LAMTOR3 (ENSUPAG00010012712) #16 DAPP1 (ENSUPAG00010012724) #17 C4orf54 (ENSUPAG00010012751) #18 MTTP (ENSUPAG00010012756) #19 ENSUPAG00010012785 #21 ADH7 (ENSUPAG00010012800) #22 ENSUPAG00010012833 #23 ENSUPAG00010012864 #25 ENSUPAG00010012877 #25 Alpin marmot MODERN SPECIES 14 SLC39A8 (ENSMMMG00000008612) #9 BANK1 (ENSMMMG00000008528) #10 PPP3CA (ENSMMMG00000008469) #11 ENSMMMG00000008440 ENSMMMG00000008436 EMCN (ENSMMMG00000008393) #12 DDIT4L (ENSMMMG00000008376) #13 ENSMMMG00000008371 ##14 DNAJB14 (ENSMMMG00000008336) #15 LAMTOR3 (ENSMMMG00000008321) #16 DAPP1 (ENSMMMG00000008311) #17 C4orf54 (ENSMMMG00000008303) #18 MTTP (ENSMMMG00000008263) #19 TRMT10A (ENSMMMG00000008257) #20 ENSMMMG00000008248 #21 ADH7 (ENSMMMG00000008222) #22 ENSMMMG00000008212 #23 ADH6 (ENSMMMG00000008181) ADH4 (ENSMMMG00000008175) ADH5 (ENSMMMG00000007886) EIF4E (ENSMMMG00000007798) TSPAN5 (ENSMMMG00000007766) RAP1GDS1 (ENSMMMG00000007591) STPG2 (ENSMMMG00000007520) ENSMMMG00000007448 UNC5C (ENSMMMG00000007320) BMPR1B (ENSMMMG00000007282) PDLIM5 (ENSMMMG00000006599) HPGDS (ENSMMMG00000006575) ENSMMMG00000006570 SMARCAD1 (ENSMMMG00000006528) Eurasian red squirrel MODERN SPECIES 18 ENSSVLG00005008327 ENSSVLG00005008348 PPP3CA (ENSSVLG00005008404) #11 ENSSVLG00005008499 EMCN (ENSSVLG00005008557) #12 DDIT4L (ENSSVLG00005008748) #13 ENSSVLG00005008769 ##14 DNAJB14 (ENSSVLG00005008827) #15 ENSSVLG00005008864 #16 DAPP1 (ENSSVLG00005008968) #17 ENSSVLG00005009094 C4orf54 (ENSSVLG00005009113) #18 MTTP (ENSSVLG00005009151) #19 TRMT10A (ENSSVLG00005009297) #20 C4orf17 (ENSSVLG00005009347) #21 ADH7 (ENSSVLG00005009430) #22 ENSSVLG00005009520 #23 ENSSVLG00005009661 ENSSVLG00005009691 ENSSVLG00005009788 #25 ENSSVLG00005010217 ADH4 (ENSSVLG00005010268) ENSSVLG00005010395 ADH5 (ENSSVLG00005010428) METAP1 (ENSSVLG00005010452) ENSSVLG00005010489 ENSSVLG00005010514 ENSSVLG00005010593 TSPAN5 (ENSSVLG00005010633) RAP1GDS1 (ENSSVLG00005010759) STPG2 (ENSSVLG00005011406) Tree shrew MODERN SPECIES 4879 ADH7 (ENSTBEG00000013208) #22