Hystricomorpha	ANCESTRAL SPECIES	61	ENSGT00940000155680.d	ENSGT00950000183015.D	ENSGT00940000153692.A	ENSGT00940000155133.b #7	ENSGT00950000182808.a.a.a.a.b #8	ENSGT00390000015549 #9	ENSGT00950000182974.a.b #11	ENSGT00940000157583 #12	ENSGT00940000161743 #15	ENSGT00940000160856 #16	ENSGT00390000017405 #17	ENSGT00700000106112 #18	ENSGT00510000046787.e.a #19	ENSGT00730000111489 #20	ENSGT00730000111375 #21	ENSGT00390000002485 #22	ENSGT00390000010702 #23	ENSGT00390000002509 #24	ENSGT00940000159025 #25	ENSGT00940000157870 #27	ENSGT00390000017018.b #29	ENSGT00390000011365.b.f #30	ENSGT00940000160368 #31	ENSGT00390000005348 #32	ENSGT00940000162692 #33	ENSGT00390000008853	ENSGT00390000014545 #35	ENSGT00940000160508 #36	ENSGT00940000160696 #37	ENSGT00510000048748	ENSGT00510000048556
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000001145 #7	SLC10A6 (ENSHGLG00000001287) #8	ENSHGLG00000001308 #9	ENSHGLG00000045541 #10	AFF1 (ENSHGLG00000001384) #11	ENSHGLG00000008155 #12	ENSHGLG00000032120 #13	ENSHGLG00000008487 #14	ENSHGLG00000008840 #15	HSD17B11 (ENSHGLG00000009549) #16	NUDT9 (ENSHGLG00000010306) #17	ENSHGLG00000010648 #18	SPARCL1 (ENSHGLG00000011108) #19	ENSHGLG00000041536 #20	DMP1 (ENSHGLG00000047355) #21	IBSP (ENSHGLG00000011597) #22	MEPE (ENSHGLG00000049259) #23	SPP1 (ENSHGLG00000012567) #24	ENSHGLG00000012710 #25	ENSHGLG00000009525 #26	ENSHGLG00000010362 #27	ENSHGLG00000014204 #28	USO1 (ENSHGLG00000014182) #29	G3BP2 (ENSHGLG00000043631) #30	CDKL2 (ENSHGLG00000013277) #31	ENSHGLG00000013662 #32	THAP6 (ENSHGLG00000043261) #33	ENSHGLG00000017025 #34	PARM1 (ENSHGLG00000017045) #35	BTC (ENSHGLG00000010995) #36	AREG (ENSHGLG00000011242) #37
Hystricomorpha_a	ANCESTRAL SPECIES	68	ENSGT00940000158223	ENSGT00940000155680.d	ENSGT00950000183015.D	ENSGT00940000153692.A	ENSGT00940000155133.b #7	ENSGT00950000182808.a.a.a.a.b #8	ENSGT00390000015549 #9	ENSGT00950000182974.a.b #11	ENSGT00940000157583 #12	ENSGT00940000161743 #15	ENSGT00940000160856 #16	ENSGT00390000017405 #17	ENSGT00700000106112 #18	ENSGT00510000046787.e.a #19	ENSGT00730000111375 #21	ENSGT00390000002485 #22	ENSGT00390000002509 #24	ENSGT00940000159025 #25	ENSGT00940000157870 #27	ENSGT00390000017018.b #29	ENSGT00390000011365.b.f #30	ENSGT00940000160368 #31	ENSGT00390000005348 #32	ENSGT00940000162692 #33	ENSGT00390000008853	ENSGT00390000014545 #35	ENSGT00940000160508 #36	ENSGT00940000160696 #37	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901
Guinea pig	MODERN SPECIES	33	CDS1 (ENSCPOG00000030064)	WDFY3 (ENSCPOG00000006746)	ARHGAP24 (ENSCPOG00000012796)	MAPK10 (ENSCPOG00000013605)	PTPN13 (ENSCPOG00000007122) #7	SLC10A6 (ENSCPOG00000010363) #8	C4orf36 (ENSCPOG00000003504) #9	ENSCPOG00000024866	AFF1 (ENSCPOG00000034568) #11	KLHL8 (ENSCPOG00000001491) #12	HSD17B13 (ENSCPOG00000014141) #15	HSD17B11 (ENSCPOG00000038248) #16	NUDT9 (ENSCPOG00000009689) #17	SPARCL1 (ENSCPOG00000001455) #19	DMP1 (ENSCPOG00000009517) #21	IBSP (ENSCPOG00000035416) #22	SPP1 (ENSCPOG00000014587) #24	PKD2 (ENSCPOG00000014588) #25	PPEF2 (ENSCPOG00000007202) #27	USO1 (ENSCPOG00000012058) #29	G3BP2 (ENSCPOG00000012052) #30	CDKL2 (ENSCPOG00000000399) #31
Hystricomorpha_b	ANCESTRAL SPECIES	45	ENSGT00940000158223	ENSGT00940000155680.d	ENSGT00950000183015.D	ENSGT00940000153692.A	ENSGT00940000155133.b #7	ENSGT00950000182808.a.a.a.a.b #8	ENSGT00390000015549 #9	ENSGT00950000182974.a.b #11	ENSGT00940000157583 #12	ENSGT00940000161743 #15	ENSGT00940000160856 #16	ENSGT00390000017405 #17	ENSGT00700000106112 #18	ENSGT00510000046787.e.a #19	ENSGT00730000111375 #21	ENSGT00390000002485 #22	ENSGT00390000002509 #24	ENSGT00940000159025 #25	ENSGT00390000017018.b #29	ENSGT00390000011365.b.f #30	ENSGT00940000160368 #31	ENSGT00390000005348 #32	ENSGT00940000162692 #33	ENSGT00390000008853	ENSGT00390000014545 #35	ENSGT00940000160508 #36	ENSGT00940000160696 #37	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000155233
Long-tailed chinchilla	MODERN SPECIES	181	CDS1 (ENSCLAG00000006900)	WDFY3 (ENSCLAG00000004977)	ARHGAP24 (ENSCLAG00000004468)	MAPK10 (ENSCLAG00000007752)	PTPN13 (ENSCLAG00000006187) #7	SLC10A6 (ENSCLAG00000006091) #8	C4orf36 (ENSCLAG00000005964) #9	AFF1 (ENSCLAG00000005537) #11	KLHL8 (ENSCLAG00000005233) #12	HSD17B13 (ENSCLAG00000004944) #15	HSD17B11 (ENSCLAG00000004877) #16	NUDT9 (ENSCLAG00000004808) #17	ENSCLAG00000004292 #18	SPARCL1 (ENSCLAG00000004209) #19	DMP1 (ENSCLAG00000004368) #21	IBSP (ENSCLAG00000004300) #22	SPP1 (ENSCLAG00000004133) #24	PKD2 (ENSCLAG00000003929) #25	ENSCLAG00000003868	USO1 (ENSCLAG00000003502) #29	G3BP2 (ENSCLAG00000003285) #30	CDKL2 (ENSCLAG00000002974) #31	ODAPH (ENSCLAG00000002892) #32	THAP6 (ENSCLAG00000002864) #33	RCHY1 (ENSCLAG00000006290)	ENSCLAG00000006211	PARM1 (ENSCLAG00000005786) #35	BTC (ENSCLAG00000005737) #36	AREG (ENSCLAG00000005654) #37	EREG (ENSCLAG00000005605)	EPGN (ENSCLAG00000005565)
Degu	MODERN SPECIES	69	ENSODEG00000009245	ENSODEG00000019627	PTPN13 (ENSODEG00000007351) #7	SLC10A6 (ENSODEG00000011019) #8	C4orf36 (ENSODEG00000007345) #9	AFF1 (ENSODEG00000007407) #11	ENSODEG00000007146	ENSODEG00000006945 #12	HSD17B13 (ENSODEG00000008266) #15	HSD17B11 (ENSODEG00000007389) #16	ENSODEG00000019391	ENSODEG00000007537 #17	SPARCL1 (ENSODEG00000008441) #19	DMP1 (ENSODEG00000007123) #21	ENSODEG00000008931	IBSP (ENSODEG00000008571) #22	ENSODEG00000006542	SPP1 (ENSODEG00000007013) #24	PKD2 (ENSODEG00000007292) #25	PPEF2 (ENSODEG00000007849) #27	ENSODEG00000007348	USO1 (ENSODEG00000007153) #29	ENSODEG00000006601 ##30	CDKL2 (ENSODEG00000007091) #31	ENSODEG00000006617 #32	ENSODEG00000007180	RCHY1 (ENSODEG00000010052)	PARM1 (ENSODEG00000006846) #35	BTC (ENSODEG00000009726) #36	AREG (ENSODEG00000006514) #37	EREG (ENSODEG00000006095)