Sarcopterygii	ANCESTRAL SPECIES	15	ENSGT00390000013474.a	ENSGT00390000004153	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.b	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00940000161503 #18	ENSGT00950000182919.C #23	ENSGT00940000154808.a.a	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT01100000263523.F	ENSGT01100000263523.I.a.a.b
Tetrapoda	ANCESTRAL SPECIES	6	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.b	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000154808.a.a	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.F	ENSGT01100000263523.I.a.a.b
Amniota	ANCESTRAL SPECIES	6	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000173501	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.F	ENSGT01100000263523.I.a.a.b
Mammalia	ANCESTRAL SPECIES	6	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000173501	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.A
Theria	ANCESTRAL SPECIES	5	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000173501	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263532.A.a.a.a.b.c.a
Eutheria	ANCESTRAL SPECIES	10	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263532.A.a.a.a.b.c.a
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT00900000143154
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT00900000143154
Primates	ANCESTRAL SPECIES	13	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263532.A.a.a.a.b.c.a
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263532.A.a.a.a.b.c.a
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.L	ENSGT01100000263523.F
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.lb #28	ENSGT00390000010116.mb ##28	ENSGT00940000162151 #32	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT01100000263523.A
Cebidae	ANCESTRAL SPECIES	11	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.lb #28	ENSGT00390000010116.mb ##28	ENSGT00940000162151 #32	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT01100000263523.A
Marmoset	MODERN SPECIES	18	ATF2 (ENSCJAG00000008085) #7	ATP5MC3 (ENSCJAG00000008207) #8	ENSCJAG00000080703 #9	ENSCJAG00000084464 #10	ENSCJAG00000022954 #11	LNPK (ENSCJAG00000008226) #12	EVX2 (ENSCJAG00000077487) #13	HOXD13 (ENSCJAG00000040882) #14	HOXD12 (ENSCJAG00000079626) #15	HOXD11 (ENSCJAG00000048503) #16	HOXD10 (ENSCJAG00000008269) #17	HOXD9 (ENSCJAG00000046789) #18	HOXD8 (ENSCJAG00000008284) #19	HOXD4 (ENSCJAG00000008286) #20	HOXD3 (ENSCJAG00000063715) #21	HOXD1 (ENSCJAG00000008290) #22	MTX2 (ENSCJAG00000039174) #23	ENSCJAG00000072603 #24	ENSCJAG00000006928 #25	NFE2L2 (ENSCJAG00000008340) #26	ENSCJAG00000059559 #27	ENSCJAG00000021732 #28	AGPS (ENSCJAG00000021508) #29	ENSCJAG00000081808 #30	ENSCJAG00000081742 #31	PDE11A (ENSCJAG00000014554) #32	ENSCJAG00000021516 #33	ENSCJAG00000072241 #34	ENSCJAG00000047313 #35	ENSCJAG00000084427 #36	ZNF385B (ENSCJAG00000021534) #37
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.lb #28	ENSGT00390000010116.mb ##28	ENSGT00940000162151 #32	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT01100000263523.A
Capuchin	MODERN SPECIES	822														ENSCCAG00000020975 #20	HOXD3 (ENSCCAG00000021072) #21	HOXD1 (ENSCCAG00000001039) #22	MTX2 (ENSCCAG00000030770) #23
Bolivian squirrel monkey	MODERN SPECIES	46	GPR155 (ENSSBOG00000034957)	WIPF1 (ENSSBOG00000032169)	CHRNA1 (ENSSBOG00000035763)	CHN1 (ENSSBOG00000016307)	ATF2 (ENSSBOG00000025461) #7	ATP5MC3 (ENSSBOG00000022688) #8	LNPK (ENSSBOG00000023054) #12	EVX2 (ENSSBOG00000034364) #13	HOXD13 (ENSSBOG00000032579) #14	HOXD12 (ENSSBOG00000025723) #15	HOXD10 (ENSSBOG00000020553) #17	HOXD9 (ENSSBOG00000031095) #18	ENSSBOG00000029405 #19	HOXD4 (ENSSBOG00000031535) #20	HOXD3 (ENSSBOG00000031894) #21	HOXD1 (ENSSBOG00000030906) #22	MTX2 (ENSSBOG00000025795) #23	HNRNPA3 (ENSSBOG00000034307) #25	NFE2L2 (ENSSBOG00000022740) #26	AGPS (ENSSBOG00000026720) #29	ENSSBOG00000019156 #28	ENSSBOG00000018055 ##28	PDE11A (ENSSBOG00000026746) #32	RBM45 (ENSSBOG00000005469) #33	OSBPL6 (ENSSBOG00000020436)	ENSSBOG00000035006	PRKRA (ENSSBOG00000012105)	PJVK (ENSSBOG00000022982)	FKBP7 (ENSSBOG00000029794)	PLEKHA3 (ENSSBOG00000030061)	ENSSBOG00000032089
Mas night monkey	MODERN SPECIES	1333	ENSANAG00000011341	ENSANAG00000037338 #7	ENSANAG00000033889 #8	ENSANAG00000023367	ENSANAG00000021797	LNPK (ENSANAG00000019161) #12	EVX2 (ENSANAG00000031929) #13	HOXD13 (ENSANAG00000029500) #14	HOXD12 (ENSANAG00000008919) #15	HOXD11 (ENSANAG00000029678) #16	HOXD10 (ENSANAG00000025381) #17	HOXD9 (ENSANAG00000024699) #18	HOXD8 (ENSANAG00000026980) #19	HOXD4 (ENSANAG00000028028) #20	HOXD3 (ENSANAG00000026428) #21	HOXD1 (ENSANAG00000019775) #22	ENSANAG00000031061	MTX2 (ENSANAG00000022501) #23	HNRNPA3 (ENSANAG00000002931) #25	NFE2L2 (ENSANAG00000023669) #26	AGPS (ENSANAG00000019626) #29	ENSANAG00000003240 ##28	ENSANAG00000025414 #32
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00910000147400	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.a ##25	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.jb #28	ENSGT00390000010116.kb #28	ENSGT00940000162151 #32	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618.o.b	ENSGT00950000183140.a.b
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00910000147400	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.a ##25	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.jb #28	ENSGT00390000010116.kb #28	ENSGT00940000162151 #32	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618.o.b	ENSGT00950000183140.a.b
Gibbon	MODERN SPECIES	14	CHRNA1 (ENSNLEG00000005914)	CHN1 (ENSNLEG00000005923)	ENSNLEG00000028605	ATF2 (ENSNLEG00000005938) #7	ATP5MC3 (ENSNLEG00000005971) #8	LNPK (ENSNLEG00000005977) #12	EVX2 (ENSNLEG00000005999) #13	HOXD13 (ENSNLEG00000029303) #14	HOXD12 (ENSNLEG00000006006) #15	HOXD10 (ENSNLEG00000006010) #17	HOXD9 (ENSNLEG00000006011) #18	ENSNLEG00000006003 #19	HOXD4 (ENSNLEG00000006014) #20	HOXD3 (ENSNLEG00000006018) #21	ENSNLEG00000027160	HOXD1 (ENSNLEG00000006019) #22	MTX2 (ENSNLEG00000006020) #23	ENSNLEG00000035565	ENSNLEG00000029348	HNRNPA3 (ENSNLEG00000028401) #25	NFE2L2 (ENSNLEG00000006029) #26	AGPS (ENSNLEG00000006030) #29	TTC30B (ENSNLEG00000033307) #28	TTC30A (ENSNLEG00000030979) #28	PDE11A (ENSNLEG00000006056) #32	ENSNLEG00000030325	RBM45 (ENSNLEG00000006080) #33	OSBPL6 (ENSNLEG00000006086)	ENSNLEG00000006120	PJVK (ENSNLEG00000006144)	FKBP7 (ENSNLEG00000006149)
Hominidae	ANCESTRAL SPECIES	17	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00910000147400	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.a ##25	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.jb #28	ENSGT00390000010116.kb #28	ENSGT00940000162151 #32	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618.o.b	ENSGT00950000183140.a.b
Orangutan	MODERN SPECIES	15	CHRNA1 (ENSPPYG00000012949)	CHN1 (ENSPPYG00000012950)	ATF2 (ENSPPYG00000012951) #7	ENSPPYG00000041465	ATP5MC3 (ENSPPYG00000037033) #8	LNPK (ENSPPYG00000032630) #12	EVX2 (ENSPPYG00000012955) #13	HOXD13 (ENSPPYG00000012956) #14	HOXD12 (ENSPPYG00000012957) #15	HOXD11 (ENSPPYG00000031598) #16	HOXD10 (ENSPPYG00000012958) #17	HOXD9 (ENSPPYG00000012959) #18	HOXD8 (ENSPPYG00000037201) #19	HOXD4 (ENSPPYG00000034536) #20	HOXD3 (ENSPPYG00000012963) #21	HOXD1 (ENSPPYG00000012964) #22	ENSPPYG00000037565	MTX2 (ENSPPYG00000012966) #23	HNRNPA3 (ENSPPYG00000012967) ##25	NFE2L2 (ENSPPYG00000012968) #26	AGPS (ENSPPYG00000012969) #29	TTC30B (ENSPPYG00000034101) #28	TTC30A (ENSPPYG00000038583) #28	PDE11A (ENSPPYG00000012972) #32	RBM45 (ENSPPYG00000012974) #33	OSBPL6 (ENSPPYG00000012975)	ENSPPYG00000012976	PJVK (ENSPPYG00000012977)	FKBP7 (ENSPPYG00000012978)	PLEKHA3 (ENSPPYG00000012979)	TTN (ENSPPYG00000012980)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00910000147400	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.jb #28	ENSGT00390000010116.kb #28	ENSGT00940000162151 #32	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618.o.b	ENSGT00950000183140.a.b	ENSGT00940000159964
Gorilla	MODERN SPECIES	15	CHRNA1 (ENSGGOG00000008036)	CHN1 (ENSGGOG00000002177)	ATF2 (ENSGGOG00000027461) #7	ATP5MC3 (ENSGGOG00000036796) #8	LNPK (ENSGGOG00000007852) #12	EVX2 (ENSGGOG00000001335) #13	ENSGGOG00000041387 #14	ENSGGOG00000038035 #15	ENSGGOG00000044084	HOXD10 (ENSGGOG00000001341) #17	HOXD9 (ENSGGOG00000001343) #18	ENSGGOG00000009898 #19	HOXD4 (ENSGGOG00000042533) #20	HOXD3 (ENSGGOG00000037089) #21	ENSGGOG00000037792	HOXD1 (ENSGGOG00000001348) #22	ENSGGOG00000041480	ENSGGOG00000040635 #15	ENSGGOG00000040237 #14	MTX2 (ENSGGOG00000044125) #23	ENSGGOG00000037084	ENSGGOG00000043877	HNRNPA3 (ENSGGOG00000006130) #25	NFE2L2 (ENSGGOG00000001231) #26	ENSGGOG00000037000	AGPS (ENSGGOG00000012114) #29	TTC30A (ENSGGOG00000009811) #28	PDE11A (ENSGGOG00000034968) #32	ENSGGOG00000040822	ENSGGOG00000040977	RBM45 (ENSGGOG00000013981) #33
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00910000147400	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.jb #28	ENSGT00390000010116.kb #28	ENSGT00940000162151 #32	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618.o.b	ENSGT00950000183140.a.b	ENSGT00940000159964
Human	MODERN SPECIES	11	WIPF1 (ENSG00000115935)	CHRNA1 (ENSG00000138435)	CHN1 (ENSG00000128656)	ATF2 (ENSG00000115966) #7	ATP5MC3 (ENSG00000154518) #8	LNPK (ENSG00000144320) #12	EVX2 (ENSG00000174279) #13	HOXD13 (ENSG00000128714) #14	HOXD12 (ENSG00000170178) #15	HOXD11 (ENSG00000128713) #16	HOXD10 (ENSG00000128710) #17	HOXD9 (ENSG00000128709) #18	HOXD8 (ENSG00000175879) #19	HOXD3 (ENSG00000128652) #21	HOXD4 (ENSG00000170166) #20	HOXD1 (ENSG00000128645) #22	MTX2 (ENSG00000128654) #23	HNRNPA3 (ENSG00000170144) #25	NFE2L2 (ENSG00000116044) #26	AGPS (ENSG00000018510) #29	TTC30B (ENSG00000196659) #28	TTC30A (ENSG00000197557) #28	PDE11A (ENSG00000128655) #32	RBM45 (ENSG00000155636) #33	OSBPL6 (ENSG00000079156)	PRKRA (ENSG00000180228)	PJVK (ENSG00000204311)	FKBP7 (ENSG00000079150)	PLEKHA3 (ENSG00000116095)	TTN (ENSG00000155657)	CCDC141 (ENSG00000163492)
Pan	ANCESTRAL SPECIES	12	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00910000147400	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.jb #28	ENSGT00390000010116.kb #28	ENSGT00940000162151 #32	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618.o.b	ENSGT00950000183140.a.b	ENSGT00940000159964
Chimpanzee	MODERN SPECIES	15	CHRNA1 (ENSPTRG00000012658)	CHN1 (ENSPTRG00000012659)	ATF2 (ENSPTRG00000012660) #7	ATP5MC3 (ENSPTRG00000047314) #8	LNPK (ENSPTRG00000012662) #12	EVX2 (ENSPTRG00000012663) #13	HOXD13 (ENSPTRG00000012664) #14	HOXD12 (ENSPTRG00000012665) #15	HOXD11 (ENSPTRG00000012666) #16	HOXD10 (ENSPTRG00000012667) #17	HOXD9 (ENSPTRG00000043464) #18	HOXD8 (ENSPTRG00000012669) #19	HOXD4 (ENSPTRG00000051862) #20	HOXD3 (ENSPTRG00000012672) #21	ENSPTRG00000051348	HOXD1 (ENSPTRG00000052716) #22	ENSPTRG00000023851	MTX2 (ENSPTRG00000012674) #23	ENSPTRG00000042815	HNRNPA3 (ENSPTRG00000012676) #25	NFE2L2 (ENSPTRG00000012677) #26	AGPS (ENSPTRG00000012680) #29	TTC30B (ENSPTRG00000048299) #28	TTC30A (ENSPTRG00000044238) #28	PDE11A (ENSPTRG00000012684) #32	ENSPTRG00000046153	ENSPTRG00000051577	RBM45 (ENSPTRG00000012686) #33	OSBPL6 (ENSPTRG00000012687)	PRKRA (ENSPTRG00000012688)	PJVK (ENSPTRG00000029126)
Bonobo	MODERN SPECIES	15	CHRNA1 (ENSPPAG00000024985)	ENSPPAG00000023882	ATF2 (ENSPPAG00000027656) #7	ATP5MC3 (ENSPPAG00000036512) #8	LNPK (ENSPPAG00000030440) #12	ENSPPAG00000039855 #13	ENSPPAG00000010483 #14	HOXD12 (ENSPPAG00000017089) #15	ENSPPAG00000028125 #16	HOXD10 (ENSPPAG00000036046) #17	HOXD9 (ENSPPAG00000039242) #18	ENSPPAG00000034189 #19	HOXD4 (ENSPPAG00000034992) #20	HOXD3 (ENSPPAG00000031713) #21	ENSPPAG00000013988	ENSPPAG00000031665 #22	ENSPPAG00000025118	MTX2 (ENSPPAG00000043265) #23	ENSPPAG00000012679	HNRNPA3 (ENSPPAG00000023768) #25	NFE2L2 (ENSPPAG00000037501) #26	AGPS (ENSPPAG00000036868) #29	TTC30B (ENSPPAG00000019313) #28	TTC30A (ENSPPAG00000023829) #28	PDE11A (ENSPPAG00000036387) #32	ENSPPAG00000029280	ENSPPAG00000035494	RBM45 (ENSPPAG00000026278) #33	OSBPL6 (ENSPPAG00000025663)	PRKRA (ENSPPAG00000043306)	PJVK (ENSPPAG00000037654)
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00910000147400	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.a ##25	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.jb #28	ENSGT00390000010116.kb #28	ENSGT00940000162151 #32	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618.o.b	ENSGT00950000183140.a.b
Rhinopithecus	ANCESTRAL SPECIES	148			ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00950000182827.A.i.b	ENSGT00390000001859.c #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00940000154301.`b.a	ENSGT00960000186717.a	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.a ##25	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.kb #28	ENSGT00940000162151 #32	ENSGT00390000010991.f.b	ENSGT00910000148248	ENSGT00940000168702	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618.o.b
Black snub-nosed monkey	MODERN SPECIES	241				ATF2 (ENSRBIG00000041657) #7	ATP5MC3 (ENSRBIG00000040343) #8	ENSRBIG00000038159	LNPK (ENSRBIG00000038235) #12	HOXD13 (ENSRBIG00000033719) #14	ENSRBIG00000035253 #16	HOXD12 (ENSRBIG00000040792) #15	HOXD10 (ENSRBIG00000030470) #17	HOXD9 (ENSRBIG00000035340) #18	HOXD8 (ENSRBIG00000036417) #19	HOXD4 (ENSRBIG00000027637) #20	HOXD3 (ENSRBIG00000044829) #21	HOXD1 (ENSRBIG00000031297) #22	ENSRBIG00000032024	ENSRBIG00000042767	MTX2 (ENSRBIG00000043097) #23	ENSRBIG00000012615 ##25	NFE2L2 (ENSRBIG00000042825) #26	AGPS (ENSRBIG00000039582) #29	TTC30A (ENSRBIG00000041155) #28	ENSRBIG00000030274	ENSRBIG00000035583	PDE11A (ENSRBIG00000043623) #32	RBM45 (ENSRBIG00000033680) #33	OSBPL6 (ENSRBIG00000040280)	PRKRA (ENSRBIG00000035301)	ENSRBIG00000014635	PJVK (ENSRBIG00000034251)
Golden snub-nosed monkey	MODERN SPECIES	722					ENSRROG00000041768 #12	ENSRROG00000044546	EVX2 (ENSRROG00000044705) #13	HOXD13 (ENSRROG00000040419) #14	HOXD12 (ENSRROG00000043268) #15	ENSRROG00000043226 #16	HOXD9 (ENSRROG00000032216) #18	HOXD10 (ENSRROG00000036162) #17	ENSRROG00000024611 #19	HOXD4 (ENSRROG00000026646) #20	HOXD3 (ENSRROG00000044509) #21	HOXD1 (ENSRROG00000035364) #22	ENSRROG00000038369	ENSRROG00000042876	ENSRROG00000020854	MTX2 (ENSRROG00000030249) #23	ENSRROG00000028794 #25	NFE2L2 (ENSRROG00000045317) #26	AGPS (ENSRROG00000035068) #29	TTC30A (ENSRROG00000023478) #28	PDE11A (ENSRROG00000028809) #32	ENSRROG00000041594	RBM45 (ENSRROG00000031398) #33	OSBPL6 (ENSRROG00000036096)	PRKRA (ENSRROG00000035389)	PJVK (ENSRROG00000007464)	FKBP7 (ENSRROG00000020947)
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00910000147400	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.jb #28	ENSGT00390000010116.kb #28	ENSGT00940000162151 #32	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618.o.b	ENSGT00950000183140.a.b	ENSGT00940000159964
Vervet Monkey	MODERN SPECIES	1	GPR155 (ENSCSAG00000014572)	WIPF1 (ENSCSAG00000014556)	CHRNA1 (ENSCSAG00000014545)	CHN1 (ENSCSAG00000014539)	ATF2 (ENSCSAG00000014523) #7	LNPK (ENSCSAG00000014506) #12	EVX2 (ENSCSAG00000014486) #13	HOXD13 (ENSCSAG00000014475) #14	HOXD12 (ENSCSAG00000014464) #15	HOXD11 (ENSCSAG00000014457) #16	HOXD10 (ENSCSAG00000014448) #17	HOXD9 (ENSCSAG00000014441) #18	HOXD8 (ENSCSAG00000014437) #19	HOXD4 (ENSCSAG00000014429) #20	HOXD3 (ENSCSAG00000014422) #21	HOXD1 (ENSCSAG00000014419) #22	MTX2 (ENSCSAG00000014412) #23	ENSCSAG00000014399 #25	NFE2L2 (ENSCSAG00000014353) #26	AGPS (ENSCSAG00000014345) #29	TTC30A (ENSCSAG00000018651) #28	PDE11A (ENSCSAG00000014313) #32	ENSCSAG00000014240	RBM45 (ENSCSAG00000014231) #33	OSBPL6 (ENSCSAG00000014221)	PJVK (ENSCSAG00000014212)	FKBP7 (ENSCSAG00000014194)	PLEKHA3 (ENSCSAG00000014182)	TTN (ENSCSAG00000013817)	CCDC141 (ENSCSAG00000012957)	SESTD1 (ENSCSAG00000012944)
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #12	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00910000147400	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.jb #28	ENSGT00390000010116.kb #28	ENSGT00940000162151 #32	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618.o.b	ENSGT00950000183140.a.b	ENSGT00940000159964
Macaca	ANCESTRAL SPECIES	15	ENSGT00390000018390.jc.n	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00910000147400	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.jb #28	ENSGT00390000010116.kb #28	ENSGT00940000162151 #32	ENSGT00940000168702	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618.o.b	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Macaca_a	ANCESTRAL SPECIES	17	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00950000182827.A.j	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00910000147400	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000170471.B.a.a.a	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.jb #28	ENSGT00390000010116.kb #28	ENSGT00940000162151 #32	ENSGT00940000168702	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618.o.b	ENSGT00950000183140.a.b	ENSGT00940000159964
Rhesus	MODERN SPECIES	3	CHRNA1 (ENSMMUG00000021796)	CHN1 (ENSMMUG00000021797)	ATF2 (ENSMMUG00000003947) #7	ATP5MC3 (ENSMMUG00000003954) #8	LNPK (ENSMMUG00000023498) #12	EVX2 (ENSMMUG00000061506) #13	HOXD13 (ENSMMUG00000055831) #14	HOXD12 (ENSMMUG00000023501) #15	HOXD11 (ENSMMUG00000047915) #16	HOXD10 (ENSMMUG00000046368) #17	HOXD9 (ENSMMUG00000032599) #18	HOXD8 (ENSMMUG00000023504) #19	HOXD4 (ENSMMUG00000060947) #20	HOXD3 (ENSMMUG00000051761) #21	ENSMMUG00000052177	HOXD1 (ENSMMUG00000065344) #22	MTX2 (ENSMMUG00000010185) #23	ENSMMUG00000031367	ENSMMUG00000054983	ENSMMUG00000062299	HNRNPA3 (ENSMMUG00000001858) #25	NFE2L2 (ENSMMUG00000001861) #26	ENSMMUG00000065205 ##27	AGPS (ENSMMUG00000008502) #29	TTC30B (ENSMMUG00000043597) #28	TTC30A (ENSMMUG00000041827) #28	PDE11A (ENSMMUG00000002011) #32	RBM45 (ENSMMUG00000002013) #33	OSBPL6 (ENSMMUG00000002183)	PRKRA (ENSMMUG00000002185)	PJVK (ENSMMUG00000054264)
Crab-eating macaque	MODERN SPECIES	3	CHN1 (ENSMFAG00000002404)	ATF2 (ENSMFAG00000002278) #7	ATP5MC3 (ENSMFAG00000056189) #8	ENSMFAG00000002936	LNPK (ENSMFAG00000002105) #12	ENSMFAG00000053875	HOXD13 (ENSMFAG00000033237) #14	HOXD12 (ENSMFAG00000051547) #15	ENSMFAG00000043724 #16	HOXD10 (ENSMFAG00000031117) #17	HOXD9 (ENSMFAG00000000099) #18	HOXD8 (ENSMFAG00000065214) #19	HOXD4 (ENSMFAG00000052240) #20	HOXD3 (ENSMFAG00000034065) #21	ENSMFAG00000047422	HOXD1 (ENSMFAG00000046035) #22	MTX2 (ENSMFAG00000026822) #23	ENSMFAG00000065500	ENSMFAG00000058081	HNRNPA3 (ENSMFAG00000000823) #25	NFE2L2 (ENSMFAG00000041108) #26	AGPS (ENSMFAG00000038904) #29	TTC30B (ENSMFAG00000057741) #28	TTC30A (ENSMFAG00000053112) #28	PDE11A (ENSMFAG00000042268) #32	ENSMFAG00000034055	RBM45 (ENSMFAG00000042524) #33	ENSMFAG00000060300	OSBPL6 (ENSMFAG00000003510)	PRKRA (ENSMFAG00000040213)	PJVK (ENSMFAG00000001249)
Pig-tailed macaque	MODERN SPECIES	585	ATF2 (ENSMNEG00000037988) #7	ATP5MC3 (ENSMNEG00000029106) #8	ENSMNEG00000035184	LNPK (ENSMNEG00000028702) #12	ENSMNEG00000024050	EVX2 (ENSMNEG00000028323) #13	HOXD13 (ENSMNEG00000027142) #14	HOXD12 (ENSMNEG00000002891) #15	HOXD11 (ENSMNEG00000029127) #16	HOXD10 (ENSMNEG00000033923) #17	HOXD9 (ENSMNEG00000044938) #18	HOXD8 (ENSMNEG00000028133) #19	HOXD4 (ENSMNEG00000030845) #20	HOXD3 (ENSMNEG00000040202) #21	ENSMNEG00000018849	HOXD1 (ENSMNEG00000010514) #22	MTX2 (ENSMNEG00000032881) #23	ENSMNEG00000026533	ENSMNEG00000034936 ##25	NFE2L2 (ENSMNEG00000028208) #26	AGPS (ENSMNEG00000043672) #29	TTC30B (ENSMNEG00000011632) #28	TTC30A (ENSMNEG00000000192) #28	PDE11A (ENSMNEG00000037080) #32
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00940000154298.a.a #8	ENSGT00950000182827.A.i.b	ENSGT00950000182827.A.j	ENSGT00390000001859 #12	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00910000147400	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.jb #28	ENSGT00390000010116.kb #28	ENSGT00940000162151 #32	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618.o.b	ENSGT00950000183140.a.b	ENSGT00940000159964
Olive baboon	MODERN SPECIES	1	CHRNA1 (ENSPANG00000007790)	CHN1 (ENSPANG00000008236)	ENSPANG00000005473	ATF2 (ENSPANG00000004806) #7	ATP5MC3 (ENSPANG00000031591) #8	LNPK (ENSPANG00000011787) #12	ENSPANG00000039545 #13	ENSPANG00000044695 #14	ENSPANG00000044332 #15	HOXD11 (ENSPANG00000049530) #16	HOXD10 (ENSPANG00000050198) #17	HOXD9 (ENSPANG00000001061) #18	HOXD8 (ENSPANG00000049199) #19	HOXD4 (ENSPANG00000000542) #20	HOXD3 (ENSPANG00000000543) #21	HOXD1 (ENSPANG00000009593) #22	MTX2 (ENSPANG00000013333) #23	ENSPANG00000045287 ##9	ENSPANG00000018337 #25	NFE2L2 (ENSPANG00000039361) #26	AGPS (ENSPANG00000004764) #29	TTC30B (ENSPANG00000046724) #28	TTC30A (ENSPANG00000041839) #28	PDE11A (ENSPANG00000025222) #32	ENSPANG00000029672	RBM45 (ENSPANG00000016088) #33	ENSPANG00000046096	OSBPL6 (ENSPANG00000016378)	PRKRA (ENSPANG00000001046)	PJVK (ENSPANG00000014211)	FKBP7 (ENSPANG00000019540)
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00940000154298.a.a #8	ENSGT00950000182827.A.i.b	ENSGT00950000182827.A.j	ENSGT00390000001859 #12	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00910000147400	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.jb #28	ENSGT00390000010116.kb #28	ENSGT00940000162151 #32	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618.o.b	ENSGT00950000183140.a.b	ENSGT00940000159964
Sooty mangabey	MODERN SPECIES	570	ATP5MC3 (ENSCATG00000035329) #8	ENSCATG00000037951	ENSCATG00000041432	LNPK (ENSCATG00000039052) #12	ENSCATG00000005782	EVX2 (ENSCATG00000038250) #13	HOXD13 (ENSCATG00000031889) #14	HOXD12 (ENSCATG00000032043) #15	HOXD10 (ENSCATG00000032256) #17	HOXD11 (ENSCATG00000031157) #16	HOXD9 (ENSCATG00000037190) #18	HOXD8 (ENSCATG00000032148) #19	HOXD4 (ENSCATG00000041719) #20	HOXD3 (ENSCATG00000029355) #21	ENSCATG00000032250	HOXD1 (ENSCATG00000032397) #22	MTX2 (ENSCATG00000039959) #23	ENSCATG00000022731	HNRNPA3 (ENSCATG00000032162) #25	ENSCATG00000001855	NFE2L2 (ENSCATG00000036834) #26	AGPS (ENSCATG00000038387) #29	TTC30B (ENSCATG00000004635) #28	TTC30A (ENSCATG00000000123) #28	PDE11A (ENSCATG00000042325) #32	ENSCATG00000008317	ENSCATG00000039319	RBM45 (ENSCATG00000041082) #33	OSBPL6 (ENSCATG00000040355)	PRKRA (ENSCATG00000032736)	PJVK (ENSCATG00000035539)
Drill	MODERN SPECIES	1072	ENSMLEG00000000615	CHN1 (ENSMLEG00000032406)	ATF2 (ENSMLEG00000035167) #7	ATP5MC3 (ENSMLEG00000043816) #8	ENSMLEG00000001270	LNPK (ENSMLEG00000033659) #12	EVX2 (ENSMLEG00000035528) #13	HOXD13 (ENSMLEG00000031532) #14	HOXD12 (ENSMLEG00000032533) #15	ENSMLEG00000030792 #16	HOXD10 (ENSMLEG00000044067) #17	HOXD9 (ENSMLEG00000025695) #18	ENSMLEG00000042507 #19	HOXD4 (ENSMLEG00000024188) #20	HOXD3 (ENSMLEG00000037278) #21	HOXD1 (ENSMLEG00000035890) #22	MTX2 (ENSMLEG00000002029) #23	NFE2L2 (ENSMLEG00000042705) #26	AGPS (ENSMLEG00000033858) #29	TTC30B (ENSMLEG00000027894) #28	TTC30A (ENSMLEG00000027775) #28	ENSMLEG00000039892	ENSMLEG00000035955	PDE11A (ENSMLEG00000044286) #32	RBM45 (ENSMLEG00000042404) #33	OSBPL6 (ENSMLEG00000021439)	PRKRA (ENSMLEG00000019578)	PJVK (ENSMLEG00000027972)	FKBP7 (ENSMLEG00000015651)	PLEKHA3 (ENSMLEG00000030446)	ENSMLEG00000034299
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.a ##25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.B
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.a ##25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.B	ENSGT01100000263532.A.a.a.a.b.c.a
Lemuriformes_a	ANCESTRAL SPECIES	69	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.a ##25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT01100000263532.A.a.a.a.b.c.b
Coquerels sifaka	MODERN SPECIES	478	ENSPCOG00000015733	CHRNA1 (ENSPCOG00000020642)	CHN1 (ENSPCOG00000018830)	ATF2 (ENSPCOG00000025416) #7	ATP5MC3 (ENSPCOG00000016374) #8	LNPK (ENSPCOG00000026983) #12	EVX2 (ENSPCOG00000022416) #13	HOXD13 (ENSPCOG00000018735) #14	HOXD12 (ENSPCOG00000022036) #15	HOXD11 (ENSPCOG00000015055) #16	HOXD10 (ENSPCOG00000023637) #17	HOXD9 (ENSPCOG00000026809) #18	HOXD8 (ENSPCOG00000024233) #19	HOXD4 (ENSPCOG00000018337) #20	HOXD3 (ENSPCOG00000017195) #21	HOXD1 (ENSPCOG00000024445) #22	MTX2 (ENSPCOG00000025077) #23	NFE2L2 (ENSPCOG00000007362) #26	AGPS (ENSPCOG00000018665) #29	PDE11A (ENSPCOG00000025830) #32	ENSPCOG00000025842	ENSPCOG00000028806	RBM45 (ENSPCOG00000021526) #33	ENSPCOG00000005659	OSBPL6 (ENSPCOG00000010731)	PRKRA (ENSPCOG00000018812)	PJVK (ENSPCOG00000022935)	FKBP7 (ENSPCOG00000018941)	PLEKHA3 (ENSPCOG00000020560)	ENSPCOG00000021252	ENSPCOG00000024634
Greater bamboo lemur	MODERN SPECIES	243	CHN1 (ENSPSMG00000024301)	ATF2 (ENSPSMG00000024416) #7	ATP5MC3 (ENSPSMG00000024446) #8	LNPK (ENSPSMG00000024460) #12	ENSPSMG00000024465	EVX2 (ENSPSMG00000024469) #13	HOXD13 (ENSPSMG00000024474) #14	HOXD12 (ENSPSMG00000024476) #15	HOXD11 (ENSPSMG00000024479) #16	HOXD10 (ENSPSMG00000024482) #17	HOXD9 (ENSPSMG00000024487) #18	HOXD8 (ENSPSMG00000024501) #19	HOXD4 (ENSPSMG00000024504) #20	HOXD3 (ENSPSMG00000024507) #21	ENSPSMG00000024512	HOXD1 (ENSPSMG00000024516) #22	NNT (ENSPSMG00000024528)	PAIP1 (ENSPSMG00000024554)	ENSPSMG00000024563
Mouse lemur	MODERN SPECIES	30	CHRNA1 (ENSMICG00000014284)	ENSMICG00000038672	CHN1 (ENSMICG00000014292)	ATF2 (ENSMICG00000006417) #7	ATP5MC3 (ENSMICG00000006421) #8	LNPK (ENSMICG00000027707) #12	EVX2 (ENSMICG00000035343) #13	HOXD13 (ENSMICG00000002170) #14	HOXD12 (ENSMICG00000002172) #15	HOXD11 (ENSMICG00000048033) #16	HOXD10 (ENSMICG00000028373) #17	HOXD9 (ENSMICG00000031229) #18	HOXD8 (ENSMICG00000004277) #19	HOXD4 (ENSMICG00000043209) #20	HOXD3 (ENSMICG00000004286) #21	HOXD1 (ENSMICG00000044650) #22	MTX2 (ENSMICG00000004295) #23	ENSMICG00000027841 ##25	NFE2L2 (ENSMICG00000009559) #26	AGPS (ENSMICG00000003750) #29	ENSMICG00000003768 #28	ENSMICG00000046051 #28	ENSMICG00000030225	PDE11A (ENSMICG00000003770) #32	ENSMICG00000047030	RBM45 (ENSMICG00000003787) #33	OSBPL6 (ENSMICG00000003793)	PRKRA (ENSMICG00000009883)	PJVK (ENSMICG00000028765)	FKBP7 (ENSMICG00000044765)	ENSMICG00000009898
Bushbaby	MODERN SPECIES	163	CHN1 (ENSOGAG00000000894)	ATF2 (ENSOGAG00000011373) #7	ATP5MC3 (ENSOGAG00000027578) #8	ENSOGAG00000026184	ENSOGAG00000030354	LNPK (ENSOGAG00000030372) #12	EVX2 (ENSOGAG00000025378) #13	HOXD13 (ENSOGAG00000027055) #14	HOXD12 (ENSOGAG00000015689) #15	HOXD11 (ENSOGAG00000029520) #16	HOXD10 (ENSOGAG00000015694) #17	HOXD9 (ENSOGAG00000015697) #18	HOXD8 (ENSOGAG00000015707) #19	HOXD4 (ENSOGAG00000029168) #20	HOXD3 (ENSOGAG00000015710) #21	HOXD1 (ENSOGAG00000015712) #22	MTX2 (ENSOGAG00000016422) #23	ENSOGAG00000032690	ENSOGAG00000028132 ##25	NFE2L2 (ENSOGAG00000034393) #26	AGPS (ENSOGAG00000013184) #29	ENSOGAG00000013189 #28	ENSOGAG00000013191	ENSOGAG00000026648	RBM45 (ENSOGAG00000015195) #33	OSBPL6 (ENSOGAG00000013765)	PRKRA (ENSOGAG00000013971)	PJVK (ENSOGAG00000033780)	FKBP7 (ENSOGAG00000002721)	PLEKHA3 (ENSOGAG00000002724)	ENSOGAG00000029563
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT00900000143154
Glires	ANCESTRAL SPECIES	14	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT00900000143154
Rodentia	ANCESTRAL SPECIES	14	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.B
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.B
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00910000144296.t	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.B	ENSGT01100000263523.A
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00910000144296.t	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.B	ENSGT01100000263523.A
Guinea pig	MODERN SPECIES	3	ENSCPOG00000034131	CHRNA1 (ENSCPOG00000000036)	ENSCPOG00000002789	ATF2 (ENSCPOG00000004637) #7	ATP5MC3 (ENSCPOG00000040161) #8	LNPK (ENSCPOG00000010971) #12	EVX2 (ENSCPOG00000006711) #13	HOXD13 (ENSCPOG00000006722) #14	HOXD12 (ENSCPOG00000005496) #15	ENSCPOG00000019766 #16	HOXD10 (ENSCPOG00000011368) #17	HOXD9 (ENSCPOG00000015006) #18	HOXD8 (ENSCPOG00000015005) #19	HOXD4 (ENSCPOG00000036552) #20	HOXD3 (ENSCPOG00000034932) #21	HOXD1 (ENSCPOG00000005509) #22	MTX2 (ENSCPOG00000011099) #23	ENSCPOG00000027250	ENSCPOG00000004251 #25	NFE2L2 (ENSCPOG00000031261) #26	AGPS (ENSCPOG00000000679) #29	ENSCPOG00000000681 #28	PDE11A (ENSCPOG00000000682) #32	RBM45 (ENSCPOG00000000684) #33	OSBPL6 (ENSCPOG00000002816)	ENSCPOG00000003900	PJVK (ENSCPOG00000037882)	FKBP7 (ENSCPOG00000037159)	PLEKHA3 (ENSCPOG00000003906)	ENSCPOG00000036479	ENSCPOG00000034673
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00910000144296.t	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT00920000150542	ENSGT00900000143154
Degu	MODERN SPECIES	106	CHN1 (ENSODEG00000008560)	ATF2 (ENSODEG00000010947) #7	ENSODEG00000010951 #8	ENSODEG00000010385	LNPK (ENSODEG00000010046) #12	ENSODEG00000008992	EVX2 (ENSODEG00000010771) #13	HOXD13 (ENSODEG00000008793) #14	HOXD12 (ENSODEG00000008376) #15	ENSODEG00000010934 #16	HOXD10 (ENSODEG00000010382) #17	HOXD9 (ENSODEG00000008626) #18	ENSODEG00000010496 #19	HOXD4 (ENSODEG00000010297) #20	HOXD3 (ENSODEG00000009722) #21	HOXD1 (ENSODEG00000008961) #22	ENSODEG00000008879	MTX2 (ENSODEG00000008062) #23	ENSODEG00000009697	ENSODEG00000009265	NFE2L2 (ENSODEG00000010043) #26	AGPS (ENSODEG00000008272) #29	ENSODEG00000020058 #28	ENSODEG00000019592 #28	PDE11A (ENSODEG00000010682) #32	ENSODEG00000019574	RBM45 (ENSODEG00000007959) #33	ENSODEG00000019659	OSBPL6 (ENSODEG00000009667)	ENSODEG00000008743	PJVK (ENSODEG00000008177)
Long-tailed chinchilla	MODERN SPECIES	110	FAT1 (ENSCLAG00000013169)	ENSCLAG00000015923	ZFP42 (ENSCLAG00000011822)	TRIML2 (ENSCLAG00000011159)	TRIML1 (ENSCLAG00000014494)	LNPK (ENSCLAG00000015033) #12	EVX2 (ENSCLAG00000014389) #13	HOXD13 (ENSCLAG00000013095) #14	HOXD12 (ENSCLAG00000013058) #15	ENSCLAG00000012563 #16	HOXD10 (ENSCLAG00000012482) #17	HOXD9 (ENSCLAG00000012447) #18	ENSCLAG00000011108 #19	HOXD4 (ENSCLAG00000014461) #20	ENSCLAG00000013605 #21	HOXD1 (ENSCLAG00000012505) #22	MTX2 (ENSCLAG00000011598) #23	ENSCLAG00000011088	HNRNPA3 (ENSCLAG00000012855) #25	NFE2L2 (ENSCLAG00000013122) #26	ENSCLAG00000012626	ENSCLAG00000013627	AGPS (ENSCLAG00000013279) #29	ENSCLAG00000017938 #28	ENSCLAG00000013714 #28	PDE11A (ENSCLAG00000013013) #32	RBM45 (ENSCLAG00000015215) #33	OSBPL6 (ENSCLAG00000011433)	PJVK (ENSCLAG00000010713)	PRKRA (ENSCLAG00000010338)	PLEKHA3 (ENSCLAG00000014135)
Naked mole-rat female	MODERN SPECIES	22	CHRNA1 (ENSHGLG00000015432)	ENSHGLG00000016114	ENSHGLG00000018805 #7	Atp5mc3 (ENSHGLG00000033165) #8	ENSHGLG00000040802	LNPK (ENSHGLG00000004015) #12	EVX2 (ENSHGLG00000004218) #13	HOXD13 (ENSHGLG00000050884) #14	HOXD12 (ENSHGLG00000005403) #15	HOXD11 (ENSHGLG00000034527) #16	HOXD9 (ENSHGLG00000007185) #18	HOXD10 (ENSHGLG00000033462) #17	ENSHGLG00000003577 #19	HOXD4 (ENSHGLG00000037842) #20	HOXD3 (ENSHGLG00000003761) #21	HOXD1 (ENSHGLG00000004072) #22	MTX2 (ENSHGLG00000004177) #23	ENSHGLG00000012734	ENSHGLG00000046644	ENSHGLG00000036655	HNRNPA3 (ENSHGLG00000005451) #25	NFE2L2 (ENSHGLG00000006475) #26	AGPS (ENSHGLG00000007541) #29	ENSHGLG00000036841 #28	TTC30B (ENSHGLG00000042840) #28	ENSHGLG00000005226 #32	ENSHGLG00000006609	ENSHGLG00000007342 #33	ENSHGLG00000045276	ENSHGLG00000040220	ENSHGLG00000003065
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a.xb #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.B
Marmotini	ANCESTRAL SPECIES	2	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a.xb.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.gb #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.B
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a.xb.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.gb #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.B
Squirrel	MODERN SPECIES	109	GPR155 (ENSSTOG00000001239)	ENSSTOG00000004271	CHRNA1 (ENSSTOG00000004281)	CHN1 (ENSSTOG00000004301)	ATF2 (ENSSTOG00000014079) #7	ENSSTOG00000013572 #8	LNPK (ENSSTOG00000014498) #12	EVX2 (ENSSTOG00000014512) #13	HOXD13 (ENSSTOG00000004117) #14	HOXD12 (ENSSTOG00000004918) #15	HOXD10 (ENSSTOG00000003935) #17	HOXD9 (ENSSTOG00000026761) #18	ENSSTOG00000023453 #19	HOXD4 (ENSSTOG00000029055) #20	HOXD3 (ENSSTOG00000014680) #21	HOXD1 (ENSSTOG00000012230) #22	MTX2 (ENSSTOG00000014688) #23	ENSSTOG00000030884	HNRNPA3 (ENSSTOG00000025125) #25	NFE2L2 (ENSSTOG00000000313) #26	AGPS (ENSSTOG00000012623) #29	ENSSTOG00000003267 #28	PDE11A (ENSSTOG00000012639) #32	ENSSTOG00000008853	RBM45 (ENSSTOG00000002708) #33	OSBPL6 (ENSSTOG00000006092)	PRKRA (ENSSTOG00000006156)	PJVK (ENSSTOG00000028411)	FKBP7 (ENSSTOG00000006176)	PLEKHA3 (ENSSTOG00000006191)	ENSSTOG00000006208
Arctic ground squirrel	MODERN SPECIES	323	WIPF1 (ENSUPAG00010020649)	CHRNA1 (ENSUPAG00010020641)	CHN1 (ENSUPAG00010020575)	ATF2 (ENSUPAG00010020491) #7	ENSUPAG00010020485 #8	LNPK (ENSUPAG00010020452) #12	EVX2 (ENSUPAG00010020442) #13	HOXD13 (ENSUPAG00010020441) #14	HOXD12 (ENSUPAG00010020440) #15	HOXD11 (ENSUPAG00010020439) #16	HOXD10 (ENSUPAG00010020434) #17	HOXD9 (ENSUPAG00010020431) #18	HOXD8 (ENSUPAG00010020425) #19	HOXD4 (ENSUPAG00010020416) #20	HOXD3 (ENSUPAG00010020410) #21	HOXD1 (ENSUPAG00010020407) #22	ENSUPAG00010020400	MTX2 (ENSUPAG00010020394) #23
Eurasian red squirrel	MODERN SPECIES	12	WIPF1 (ENSSVLG00005002786)	CHRNA1 (ENSSVLG00005002856)	CHN1 (ENSSVLG00005003041)	ENSSVLG00005003279 #7	ENSSVLG00005003430 #8	ENSSVLG00005003466	LNPK (ENSSVLG00005003500) #12	EVX2 (ENSSVLG00005003539) #13	HOXD13 (ENSSVLG00005003554) #14	HOXD12 (ENSSVLG00005003565) #15	HOXD11 (ENSSVLG00005003581) #16	HOXD10 (ENSSVLG00005003599) #17	HOXD9 (ENSSVLG00005003618) #18	HOXD8 (ENSSVLG00005003645) #19	HOXD4 (ENSSVLG00005003676) #20	HOXD1 (ENSSVLG00005003762) #22	MTX2 (ENSSVLG00005003812) #23	ENSSVLG00005003881 #25	ENSSVLG00005003903 #26	AGPS (ENSSVLG00005003959) #29	ENSSVLG00005003996 #28	ENSSVLG00005004006 #28	ENSSVLG00005004018 #28	PDE11A (ENSSVLG00005004050) #32	ENSSVLG00005004113	RBM45 (ENSSVLG00005004137) #33	OSBPL6 (ENSSVLG00005004465)	PRKRA (ENSSVLG00005005027)	PJVK (ENSSVLG00005005095)	ENSSVLG00005005163	FKBP7 (ENSSVLG00005005181)
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.A
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b.p #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.A	ENSGT01100000263523.B
Muroidea	ANCESTRAL SPECIES	34	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b.p #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #28	ENSGT00390000010116.y.a #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.A
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b.p #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #28	ENSGT00390000010116.y.a.a #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b.p #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #28	ENSGT00390000010116.y.a.a #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000171387	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000154808.a.a	ENSGT00940000153147.m.a.a.a.b.a.b.p #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #28	ENSGT00390000010116.y.a.a #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001019803	Chn1 (ENSCGRG00001019152)	Atf2 (ENSCGRG00001015584) #7	Atp5g3 (ENSCGRG00001012041) #8	Lnpk (ENSCGRG00001011515) #12	ENSCGRG00001006802	Evx2 (ENSCGRG00001003649) #13	Hoxd13 (ENSCGRG00001001661) #14	Hoxd12 (ENSCGRG00001000877) #15	Hoxd11 (ENSCGRG00001010386) #16	Hoxd10 (ENSCGRG00001008302) #17	Hoxd9 (ENSCGRG00001005991) #18	Hoxd8 (ENSCGRG00001013130) #19	Hoxd4 (ENSCGRG00001012360) #20	Hoxd3 (ENSCGRG00001011863) #21	Hoxd1 (ENSCGRG00001011572) #22	ENSCGRG00001014512	Mtx2 (ENSCGRG00001014247) #23	ENSCGRG00001003235	ENSCGRG00001008592 #25	Nfe2l2 (ENSCGRG00001005715) #26	Agps (ENSCGRG00001003863) #29	Ttc30b (ENSCGRG00001002157) #28	Ttc30a1 (ENSCGRG00001000892) #28	ENSCGRG00001003072	Pde11a (ENSCGRG00001011422) #32	Cyct (ENSCGRG00001008096)	Rbm45 (ENSCGRG00001005759) #33	Osbpl6 (ENSCGRG00001002669)	Prkra (ENSCGRG00001009200)	Pjvk (ENSCGRG00001006219)
Golden Hamster	MODERN SPECIES	618	Chrna1 (ENSMAUG00000017924)	Chn1 (ENSMAUG00000018455)	Atf2 (ENSMAUG00000018366) #7	Atp5g3 (ENSMAUG00000017685) #8	ENSMAUG00000020495	Lnpk (ENSMAUG00000018821) #12	Evx2 (ENSMAUG00000020383) #13	Hoxd13 (ENSMAUG00000017185) #14	Hoxd12 (ENSMAUG00000018416) #15	ENSMAUG00000020249 #16	Hoxd10 (ENSMAUG00000016731) #17	Hoxd9 (ENSMAUG00000018538) #18	Hoxd8 (ENSMAUG00000018092) #19	Hoxd4 (ENSMAUG00000018545) #20	Hoxd3 (ENSMAUG00000018318) #21	Hoxd1 (ENSMAUG00000018401) #22	Mtx2 (ENSMAUG00000017870) #23	ENSMAUG00000017462	Nfe2l2 (ENSMAUG00000017700) #26	Agps (ENSMAUG00000017317) #29	Pde11a (ENSMAUG00000021257) #32	Cyct (ENSMAUG00000016722)	Rbm45 (ENSMAUG00000016948) #33	Osbpl6 (ENSMAUG00000018609)	Prkra (ENSMAUG00000019631)	Pjvk (ENSMAUG00000018018)	Fkbp7 (ENSMAUG00000016606)	Plekha3 (ENSMAUG00000019341)	ENSMAUG00000018786	ENSMAUG00000019513	ENSMAUG00000018562
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b.p #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #28	ENSGT00390000010116.y.a.a #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Prairie vole	MODERN SPECIES	12	ENSMOCG00000014660	Chrna1 (ENSMOCG00000020367)	Chn1 (ENSMOCG00000005574)	Atf2 (ENSMOCG00000015301) #7	ENSMOCG00000012786 #8	Lnpk (ENSMOCG00000022345) #12	Evx2 (ENSMOCG00000010466) #13	Hoxd13 (ENSMOCG00000014618) #14	Hoxd12 (ENSMOCG00000018953) #15	Hoxd11 (ENSMOCG00000019226) #16	Hoxd10 (ENSMOCG00000006052) #17	Hoxd9 (ENSMOCG00000005870) #18	Hoxd8 (ENSMOCG00000022746) #19	Hoxd3 (ENSMOCG00000022552) #21	Hoxd4 (ENSMOCG00000013646) #20	Hoxd1 (ENSMOCG00000014086) #22	Mtx2 (ENSMOCG00000017110) #23	ENSMOCG00000019409 ##25	Nfe2l2 (ENSMOCG00000020760) #26	Agps (ENSMOCG00000017476) #29	Ttc30b (ENSMOCG00000001580) #28	ENSMOCG00000001098	Ttc30a2 (ENSMOCG00000002802) #28	Pde11a (ENSMOCG00000005959) #32	Cyct (ENSMOCG00000021506)	Rbm45 (ENSMOCG00000017295) #33	Osbpl6 (ENSMOCG00000017155)	Prkra (ENSMOCG00000004548)	Pjvk (ENSMOCG00000006830)	Fkbp7 (ENSMOCG00000008125)	Plekha3 (ENSMOCG00000004146)
Northern American deer mouse	MODERN SPECIES	17	Chn1 (ENSPEMG00000022535)	Atf2 (ENSPEMG00000021625) #7	Atp5g3 (ENSPEMG00000023766) #8	ENSPEMG00000008662	Lnpk (ENSPEMG00000017827) #12	Evx2 (ENSPEMG00000022145) #13	Hoxd13 (ENSPEMG00000022412) #14	Hoxd12 (ENSPEMG00000019240) #15	ENSPEMG00000018816 #16	Hoxd10 (ENSPEMG00000030445) #17	Hoxd9 (ENSPEMG00000006162) #18	ENSPEMG00000028623 #19	ENSPEMG00000029322	Hoxd4 (ENSPEMG00000024627) #20	Hoxd3 (ENSPEMG00000028862) #21	Hoxd1 (ENSPEMG00000021389) #22	Mtx2 (ENSPEMG00000022093) #23	Hnrnpa3 (ENSPEMG00000021885) #25	Nfe2l2 (ENSPEMG00000023181) #26	Agps (ENSPEMG00000010561) #29	ENSPEMG00000023662	Ttc30b (ENSPEMG00000001902) #28	Ttc30a1 (ENSPEMG00000025624) #28	Pde11a (ENSPEMG00000021597) #32	Cyct (ENSPEMG00000028091)	Rbm45 (ENSPEMG00000002470) #33	Osbpl6 (ENSPEMG00000010580)	Prkra (ENSPEMG00000011967)	Pjvk (ENSPEMG00000013970)	Fkbp7 (ENSPEMG00000011534)	Plekha3 (ENSPEMG00000021541)
Murinae	ANCESTRAL SPECIES	1	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #28	ENSGT00390000010116.y.a.b #28	ENSGT00390000010116.y.a.a #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Mus	ANCESTRAL SPECIES	1	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #25	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #28	ENSGT00390000010116.y.a.b #28	ENSGT00390000010116.y.a.a #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964
Mus_A	ANCESTRAL SPECIES		ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #25	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #28	ENSGT00390000010116.y.a.b #28	ENSGT00390000010116.y.a.a #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964
Mus_B	ANCESTRAL SPECIES	1	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #28	ENSGT00390000010116.y.a.b #28	ENSGT00390000010116.y.a.a #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Mus_C	ANCESTRAL SPECIES		ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.b ##25	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.A
Steppe mouse	MODERN SPECIES	3326	Chn1 (ENSMSIG00000006692)	ENSMSIG00000006659	Atf2 (ENSMSIG00000006546) #7	Atp5g3 (ENSMSIG00000006512) #8	ENSMSIG00000006495	Lnpk (ENSMSIG00000006386) #12	Evx2 (ENSMSIG00000006361) #13	Hoxd13 (ENSMSIG00000006348) #14	Hoxd12 (ENSMSIG00000006333) #15	Hoxd11 (ENSMSIG00000006326) #16	Hoxd10 (ENSMSIG00000006313) #17	Hoxd9 (ENSMSIG00000006304) #18	Hoxd8 (ENSMSIG00000006283) #19	ENSMSIG00000006186 #20	Hoxd3 (ENSMSIG00000006158) #21	Hoxd1 (ENSMSIG00000006137) #22	Mtx2 (ENSMSIG00000006053) #23	ENSMSIG00000006005	ENSMSIG00000005981	ENSMSIG00000005709 #25	Nfe2l2 (ENSMSIG00000005673) #26
spretus	MODERN SPECIES	11	Chrna1 (MGP_SPRETEiJ_G0024584)	Chn1 (MGP_SPRETEiJ_G0024585)	Atf2 (MGP_SPRETEiJ_G0024586) #7	Atp5g3 (MGP_SPRETEiJ_G0024587) #8	Lnpk (MGP_SPRETEiJ_G0024588) #12	Evx2 (MGP_SPRETEiJ_G0024589) #13	Hoxd13 (MGP_SPRETEiJ_G0024590) #14	Hoxd12 (MGP_SPRETEiJ_G0024591) #15	Hoxd11 (MGP_SPRETEiJ_G0024592) #16	Hoxd10 (MGP_SPRETEiJ_G0024593) #17	Hoxd9 (MGP_SPRETEiJ_G0024594) #18	Hoxd8 (MGP_SPRETEiJ_G0024595) #19	Hoxd3 (MGP_SPRETEiJ_G0024596) #21	Hoxd4 (MGP_SPRETEiJ_G0024597) #20	MGP_SPRETEiJ_G0024598 #20	Hoxd1 (MGP_SPRETEiJ_G0024599) #22	Mtx2 (MGP_SPRETEiJ_G0024600) #23	MGP_SPRETEiJ_G0024601 ##25	Nfe2l2 (MGP_SPRETEiJ_G0024602) #26	Agps (MGP_SPRETEiJ_G0024603) #29	MGP_SPRETEiJ_G0024604 #28	Pde11a (MGP_SPRETEiJ_G0024605) #32	Cyct (MGP_SPRETEiJ_G0024606)	Rbm45 (MGP_SPRETEiJ_G0024607) #33	Osbpl6 (MGP_SPRETEiJ_G0024608)	Prkra (MGP_SPRETEiJ_G0024609)	Pjvk (MGP_SPRETEiJ_G0024610)	Fkbp7 (MGP_SPRETEiJ_G0024611)	Plekha3 (MGP_SPRETEiJ_G0024612)	Ttn (MGP_SPRETEiJ_G0024613)	Ccdc141 (MGP_SPRETEiJ_G0024614)
Mouse	MODERN SPECIES	11	Wipf1 (ENSMUSG00000075284)	Chrna1 (ENSMUSG00000027107)	Chn1 (ENSMUSG00000056486)	Atf2 (ENSMUSG00000027104) #7	Atp5g3 (ENSMUSG00000018770) #8	Lnpk (ENSMUSG00000009207) #12	Evx2 (ENSMUSG00000001815) #13	Hoxd13 (ENSMUSG00000001819) #14	Hoxd12 (ENSMUSG00000001823) #15	Hoxd11 (ENSMUSG00000042499) #16	Hoxd10 (ENSMUSG00000050368) #17	Hoxd9 (ENSMUSG00000043342) #18	Hoxd8 (ENSMUSG00000027102) #19	Hoxd3 (ENSMUSG00000079277) #21	Hoxd4 (ENSMUSG00000101174) #20	Hoxd1 (ENSMUSG00000042448) #22	Mtx2 (ENSMUSG00000027099) #23	Hnrnpa3 (ENSMUSG00000059005) #25	Nfe2l2 (ENSMUSG00000015839) #26	Agps (ENSMUSG00000042410) #29	Ttc30b (ENSMUSG00000075273) #28	Ttc30a2 (ENSMUSG00000075272) #28	Ttc30a1 (ENSMUSG00000075271) #28	Pde11a (ENSMUSG00000075270) #32	Cyct (ENSMUSG00000056436)	Rbm45 (ENSMUSG00000042369) #33	Osbpl6 (ENSMUSG00000042359)	Prkra (ENSMUSG00000002731)	Pjvk (ENSMUSG00000075267)	Fkbp7 (ENSMUSG00000002732)	Plekha3 (ENSMUSG00000002733)
Ryukyu mouse	MODERN SPECIES	11	Chrna1 (MGP_CAROLIEiJ_G0023661)	Chn1 (MGP_CAROLIEiJ_G0023662)	Atf2 (MGP_CAROLIEiJ_G0023663) #7	Atp5g3 (MGP_CAROLIEiJ_G0023664) #8	Lnpk (MGP_CAROLIEiJ_G0023665) #12	Evx2 (MGP_CAROLIEiJ_G0023666) #13	Hoxd13 (MGP_CAROLIEiJ_G0023667) #14	Hoxd12 (MGP_CAROLIEiJ_G0023668) #15	Hoxd11 (MGP_CAROLIEiJ_G0023669) #16	Hoxd10 (MGP_CAROLIEiJ_G0023670) #17	Hoxd9 (MGP_CAROLIEiJ_G0023671) #18	Hoxd8 (MGP_CAROLIEiJ_G0023672) #19	Hoxd3 (MGP_CAROLIEiJ_G0023673) #21	Hoxd4 (MGP_CAROLIEiJ_G0023674) #20	MGP_CAROLIEiJ_G0023675 #20	Hoxd1 (MGP_CAROLIEiJ_G0023676) #22	Mtx2 (MGP_CAROLIEiJ_G0023677) #23	MGP_CAROLIEiJ_G0023678 #25	Nfe2l2 (MGP_CAROLIEiJ_G0023679) #26	Agps (MGP_CAROLIEiJ_G0023680) #29	MGP_CAROLIEiJ_G0023681 #28	MGP_CAROLIEiJ_G0023682 #28	Pde11a (MGP_CAROLIEiJ_G0023683) #32	MGP_CAROLIEiJ_G0023684	Cyct (MGP_CAROLIEiJ_G0023685)	Rbm45 (MGP_CAROLIEiJ_G0023686) #33	Osbpl6 (MGP_CAROLIEiJ_G0023687)	Prkra (MGP_CAROLIEiJ_G0023688)	Pjvk (MGP_CAROLIEiJ_G0023689)	Fkbp7 (MGP_CAROLIEiJ_G0023690)	Plekha3 (MGP_CAROLIEiJ_G0023691)
Shrew mouse	MODERN SPECIES	16	Chrna1 (MGP_PahariEiJ_G0025113)	MGP_PahariEiJ_G0025114	Atf2 (MGP_PahariEiJ_G0025115) #7	Atp5g3 (MGP_PahariEiJ_G0025116) #8	Lnpk (MGP_PahariEiJ_G0025117) #12	Evx2 (MGP_PahariEiJ_G0025118) #13	Hoxd13 (MGP_PahariEiJ_G0025119) #14	Hoxd12 (MGP_PahariEiJ_G0025120) #15	Hoxd11 (MGP_PahariEiJ_G0025121) #16	Hoxd10 (MGP_PahariEiJ_G0025122) #17	Hoxd9 (MGP_PahariEiJ_G0025123) #18	Hoxd8 (MGP_PahariEiJ_G0025124) #19	Hoxd3 (MGP_PahariEiJ_G0025125) #21	Hoxd4 (MGP_PahariEiJ_G0025126) #20	MGP_PahariEiJ_G0025127 #20	Hoxd1 (MGP_PahariEiJ_G0025128) #22	Mtx2 (MGP_PahariEiJ_G0025129) #23	Hnrnpa3 (MGP_PahariEiJ_G0025130) #25	Nfe2l2 (MGP_PahariEiJ_G0025131) #26	MGP_PahariEiJ_G0025132 #29	MGP_PahariEiJ_G0025133 #28	MGP_PahariEiJ_G0025134 #28	Pde11a (MGP_PahariEiJ_G0025135) #32	Cyct (MGP_PahariEiJ_G0025136)	Rbm45 (MGP_PahariEiJ_G0025137) #33	Osbpl6 (MGP_PahariEiJ_G0025138)	Prkra (MGP_PahariEiJ_G0025139)	Pjvk (MGP_PahariEiJ_G0025140)	Fkbp7 (MGP_PahariEiJ_G0025141)	Plekha3 (MGP_PahariEiJ_G0025142)	MGP_PahariEiJ_G0025143
Rat	MODERN SPECIES	13	Chn1 (ENSRNOG00000017939)	ENSRNOG00000068403	Atf2 (ENSRNOG00000001597) #7	Atp5mc3 (ENSRNOG00000001596) #8	Lnpk (ENSRNOG00000001593) #12	Evx2 (ENSRNOG00000001589) #13	Hoxd13 (ENSRNOG00000001588) #14	Hoxd12 (ENSRNOG00000001587) #15	Hoxd11 (ENSRNOG00000069591) #16	Hoxd10 (ENSRNOG00000001581) #17	Hoxd9 (ENSRNOG00000001580) #18	Hoxd8 (ENSRNOG00000071108) #19	Hoxd4 (ENSRNOG00000001578) #20	AABR07052559.1 (ENSRNOG00000053144)	Hoxd3 (ENSRNOG00000001577) #21	Hoxd1 (ENSRNOG00000001572) #22	Mtx2 (ENSRNOG00000001559) #23	Hnrnpa3 (ENSRNOG00000052968) #25	Nfe2l2 (ENSRNOG00000001548) #26	ENSRNOG00000066660	Agps (ENSRNOG00000001547) #29	Ttc30b (ENSRNOG00000059460) #28	Ttc30a1 (ENSRNOG00000052519) #28	Ttc30a (ENSRNOG00000069321) #28	Cyct (ENSRNOG00000024457) #32	Rbm45 (ENSRNOG00000010595) #33	Osbpl6 (ENSRNOG00000010812)	Prkra (ENSRNOG00000011195)	Pjvk (ENSRNOG00000038165)	Fkbp7 (ENSRNOG00000011758)	Plekha3 (ENSRNOG00000011830)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1735	ENSNGAG00000022478	Chrna1 (ENSNGAG00000023534)	Chn1 (ENSNGAG00000021893)	Atf2 (ENSNGAG00000003870) #7	Atp5g3 (ENSNGAG00000004748) #8	Lnpk (ENSNGAG00000023466) #12	Evx2 (ENSNGAG00000023877) #13	Hoxd13 (ENSNGAG00000023727) #14	Hoxd12 (ENSNGAG00000023455) #15	Hoxd11 (ENSNGAG00000023438) #16	Hoxd10 (ENSNGAG00000023868) #17	Hoxd9 (ENSNGAG00000011105) #18	Hoxd8 (ENSNGAG00000011799) #19	Hoxd4 (ENSNGAG00000020270) #20	Hoxd3 (ENSNGAG00000021055) #21	Hoxd1 (ENSNGAG00000021714) #22	Mtx2 (ENSNGAG00000020555) #23	ENSNGAG00000021745 ##25	Nfe2l2 (ENSNGAG00000022809) #26	Agps (ENSNGAG00000020263) #29	ENSNGAG00000022555 #28	Pde11a (ENSNGAG00000023493) #32	Cyct (ENSNGAG00000023547)	ENSNGAG00000021016	Rbm45 (ENSNGAG00000023886) #33	Osbpl6 (ENSNGAG00000014527)	Prkra (ENSNGAG00000021816)	Pjvk (ENSNGAG00000022020)	Fkbp7 (ENSNGAG00000022641)	Plekha3 (ENSNGAG00000020579)	ENSNGAG00000021911
Lesser Egyptian jerboa	MODERN SPECIES	75	Sp9 (ENSJJAG00000020056)	Cir1 (ENSJJAG00000010849)	Scrn3 (ENSJJAG00000021027)	Chrna1 (ENSJJAG00000018710)	ENSJJAG00000014124	Chn1 (ENSJJAG00000015001)	Atf2 (ENSJJAG00000015836) #7	Atp5g3 (ENSJJAG00000022403) #8	ENSJJAG00000013766	Lnpk (ENSJJAG00000011710) #12	Evx2 (ENSJJAG00000017484) #13	Hoxd13 (ENSJJAG00000016388) #14	Hoxd12 (ENSJJAG00000016261) #15	Hoxd11 (ENSJJAG00000012344) #16	Hoxd10 (ENSJJAG00000011932) #17	Hoxd1 (ENSJJAG00000019059) #22	ENSJJAG00000019952	ENSJJAG00000013228 #23	ENSJJAG00000000149 #25	Nfe2l2 (ENSJJAG00000019899) #26	Agps (ENSJJAG00000016720) #29	ENSJJAG00000014867 #28	ENSJJAG00000012087 #28	Pde11a (ENSJJAG00000018583) #32	Rbm45 (ENSJJAG00000001312) #33	Osbpl6 (ENSJJAG00000017863)	Prkra (ENSJJAG00000013031)	Pjvk (ENSJJAG00000012900)	Fkbp7 (ENSJJAG00000012221)	Plekha3 (ENSJJAG00000021299)	ENSJJAG00000015136
Kangaroo rat	MODERN SPECIES	324	ENSDORG00000013682	Gpr155 (ENSDORG00000013683)	ENSDORG00000027952	Chrna1 (ENSDORG00000001136)	Chn1 (ENSDORG00000002182)	Atf2 (ENSDORG00000024409) #7	Atp5g3 (ENSDORG00000012973) #8	Lnpk (ENSDORG00000015736) #12	Evx2 (ENSDORG00000009432) #13	Hoxd12 (ENSDORG00000009434) #15	ENSDORG00000029219 #16	Hoxd10 (ENSDORG00000009436) #17	ENSDORG00000027655 #19	Hoxd4 (ENSDORG00000028681) #20	Hoxd3 (ENSDORG00000029389) #21	Hoxd1 (ENSDORG00000009445) #22	Mtx2 (ENSDORG00000003848) #23	Hnrnpa3 (ENSDORG00000011155) #25	Nfe2l2 (ENSDORG00000030173) #26	Agps (ENSDORG00000006480) #29	ENSDORG00000028567 #28	ENSDORG00000028697 #28	ENSDORG00000023150 #28	Cyct (ENSDORG00000004101)	Rbm45 (ENSDORG00000015831) #33	Osbpl6 (ENSDORG00000001912)	Prkra (ENSDORG00000013338)	Pjvk (ENSDORG00000013339)	Fkbp7 (ENSDORG00000013340)	Plekha3 (ENSDORG00000015344)	ENSDORG00000029166
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT00390000004153	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000164264	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.K
Rabbit	MODERN SPECIES	18	ENSOCUG00000005696	CHRNA1 (ENSOCUG00000024814)	CHN1 (ENSOCUG00000008134)	ATF2 (ENSOCUG00000012156) #7	ATP5MC3 (ENSOCUG00000012164) #8	LNPK (ENSOCUG00000008962) #12	EVX2 (ENSOCUG00000032776) #13	HOXD13 (ENSOCUG00000029547) #14	HOXD12 (ENSOCUG00000002412) #15	HOXD11 (ENSOCUG00000013942) #16	HOXD10 (ENSOCUG00000008964) #17	HOXD9 (ENSOCUG00000023956) #18	ENSOCUG00000035940 #19	HOXD4 (ENSOCUG00000002413) #20	HOXD3 (ENSOCUG00000014119) #21	HOXD1 (ENSOCUG00000015582) #22	MTX2 (ENSOCUG00000008760) #23	ENSOCUG00000025666	ENSOCUG00000030456	ENSOCUG00000002743 #25	NFE2L2 (ENSOCUG00000001009) #26	AGPS (ENSOCUG00000011521) #29	ENSOCUG00000029884 #28	ENSOCUG00000039012 #28	ENSOCUG00000008038	ENSOCUG00000039559	ENSOCUG00000025342	RBM45 (ENSOCUG00000001125) #33	OSBPL6 (ENSOCUG00000004078)	PRKRA (ENSOCUG00000005489)	PJVK (ENSOCUG00000005493)
Pika	MODERN SPECIES	959										ENSOPRG00000004018 #16	HOXD10 (ENSOPRG00000004038) #17	ENSOPRG00000004049 #18	HOXD8 (ENSOPRG00000004065) #19	ENSOPRG00000004081 #20	HOXD3 (ENSOPRG00000004098) #21	ENSOPRG00000004116 #22
Tree shrew	MODERN SPECIES	3966											EVX2 (ENSTBEG00000010517) #13	HOXD12 (ENSTBEG00000010799) #15	HOXD10 (ENSTBEG00000010925) #17	HOXD9 (ENSTBEG00000010979) #18	HOXD8 (ENSTBEG00000011462) #19	ENSTBEG00000011786 #22
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT00900000143154
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT00900000143154
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT00900000143154
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #28	ENSGT00390000010116.fc.b #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #28	ENSGT00390000010116.fc.b #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Cetacea	ANCESTRAL SPECIES	14	ENSGT00940000171387	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #28	ENSGT00390000010116.fc.b #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.A.a.a.a.b.c.a
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00390000004755.tb.a.a	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##25	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #28	ENSGT00390000010116.fc.b #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00390000004755.tb.a.a	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##25	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #28	ENSGT00390000010116.fc.b #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000008142.t	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #28	ENSGT00390000010116.fc.b #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.L
Monodontidae	ANCESTRAL SPECIES	10	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000008142.t	ENSGT00950000182834.A.a.a.t	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #28	ENSGT00390000010116.fc.b #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.A
Narwhal	MODERN SPECIES	302	CHN1 (ENSMMNG00015007913)	ATF2 (ENSMMNG00015007777) #7	ATP5MC3 (ENSMMNG00015007729) #8	ENSMMNG00015007699	ENSMMNG00015007684	LNPK (ENSMMNG00015007647) #12	EVX2 (ENSMMNG00015007622) #13	HOXD13 (ENSMMNG00015007609) #14	HOXD12 (ENSMMNG00015007598) #15	ENSMMNG00015007589 #16	HOXD10 (ENSMMNG00015007571) #17	HOXD9 (ENSMMNG00015007556) #18	HOXD8 (ENSMMNG00015007526) #19	HOXD4 (ENSMMNG00015007477) #20	HOXD3 (ENSMMNG00015007460) #21	HOXD1 (ENSMMNG00015007440) #22	MTX2 (ENSMMNG00015007394) #23	ENSMMNG00015007339 ##25	NFE2L2 (ENSMMNG00015007306) #26	AGPS (ENSMMNG00015007255) #29	ENSMMNG00015007232 #28	ENSMMNG00015007201 #28	ENSMMNG00015014296	PDE11A (ENSMMNG00015014260) #32	ENSMMNG00015014238	RBM45 (ENSMMNG00015014220) #33	OSBPL6 (ENSMMNG00015014111)	PRKRA (ENSMMNG00015014019)	PJVK (ENSMMNG00015014003)	FKBP7 (ENSMMNG00015013990)	ENSMMNG00015013983
Beluga whale	MODERN SPECIES	84	CHN1 (ENSDLEG00000008654)	ATF2 (ENSDLEG00000008726) #7	ATP5G3 (ENSDLEG00000008800) #8	ENSDLEG00000008837	ENSDLEG00000008854	LNPK (ENSDLEG00000008885) #12	EVX2 (ENSDLEG00000008943) #13	HOXD13 (ENSDLEG00000009014) #14	HOXD12 (ENSDLEG00000009038) #15	ENSDLEG00000009052 #16	HOXD10 (ENSDLEG00000009076) #17	HOXD9 (ENSDLEG00000009091) #18	HOXD8 (ENSDLEG00000009104) #19	HOXD4 (ENSDLEG00000009166) #20	HOXD3 (ENSDLEG00000009171) #21	HOXD1 (ENSDLEG00000009181) #22	MTX2 (ENSDLEG00000009199) #23	ENSDLEG00000009227 ##25	NFE2L2 (ENSDLEG00000009266) #26	AGPS (ENSDLEG00000009335) #29	ENSDLEG00000009463 #28	ENSDLEG00000009469 #28	ENSDLEG00000009481 #32	ENSDLEG00000009493	RBM45 (ENSDLEG00000009507) #33	OSBPL6 (ENSDLEG00000009570)	PRKRA (ENSDLEG00000009768)	PJVK (ENSDLEG00000009801)	FKBP7 (ENSDLEG00000009831)	PLEKHA3 (ENSDLEG00000009842)	ENSDLEG00000009851
Vaquita	MODERN SPECIES	18	CHN1 (ENSPSNG00000006315)	ATF2 (ENSPSNG00000006111) #7	ATP5MC3 (ENSPSNG00000006024) #8	ENSPSNG00000005869	ENSPSNG00000005846	LNPK (ENSPSNG00000005786) #12	EVX2 (ENSPSNG00000005734) #13	HOXD13 (ENSPSNG00000005715) #14	HOXD12 (ENSPSNG00000005695) #15	HOXD11 (ENSPSNG00000005666) #16	HOXD10 (ENSPSNG00000005654) #17	HOXD9 (ENSPSNG00000005639) #18	HOXD8 (ENSPSNG00000005602) #19	HOXD4 (ENSPSNG00000005556) #20	HOXD3 (ENSPSNG00000005539) #21	HOXD1 (ENSPSNG00000005524) #22	MTX2 (ENSPSNG00000005488) #23	ENSPSNG00000005439 ##25	NFE2L2 (ENSPSNG00000005384) #26	AGPS (ENSPSNG00000005315) #29	ENSPSNG00000005284 #28	ENSPSNG00000007902 #28	PDE11A (ENSPSNG00000007618) #32	ENSPSNG00000007564	RBM45 (ENSPSNG00000007527) #33	OSBPL6 (ENSPSNG00000007225)	PRKRA (ENSPSNG00000007030)	PJVK (ENSPSNG00000006966)	FKBP7 (ENSPSNG00000006918)	ENSPSNG00000006805	PLEKHA3 (ENSPSNG00000006784)
Dolphin	MODERN SPECIES	220																ENSTTRG00000002522 #22	MTX2 (ENSTTRG00000002526) #23
Sperm whale	MODERN SPECIES	11	ENSPCTG00005005929	CHRNA1 (ENSPCTG00005005965)	CHN1 (ENSPCTG00005006263)	ATF2 (ENSPCTG00005007004) #7	ATP5MC3 (ENSPCTG00005007202) #8	LNPK (ENSPCTG00005007293) #12	EVX2 (ENSPCTG00005007330) #13	HOXD13 (ENSPCTG00005007354) #14	HOXD12 (ENSPCTG00005007367) #15	ENSPCTG00005007381 #16	HOXD10 (ENSPCTG00005007393) #17	HOXD9 (ENSPCTG00005007399) #18	HOXD8 (ENSPCTG00005007418) #19	HOXD4 (ENSPCTG00005007493) #20	HOXD3 (ENSPCTG00005007508) #21	HOXD1 (ENSPCTG00005007516) #22	MTX2 (ENSPCTG00005007528) #23	ENSPCTG00005003466 ##25	NFE2L2 (ENSPCTG00005003486) #26	AGPS (ENSPCTG00005003530) #29	ENSPCTG00005003590 #28	ENSPCTG00005003599 #28	PDE11A (ENSPCTG00005003616) #32	ENSPCTG00005003686	RBM45 (ENSPCTG00005003694) #33	OSBPL6 (ENSPCTG00005003757)	PJVK (ENSPCTG00005003934)	PRKRA (ENSPCTG00005003951)	FKBP7 (ENSPCTG00005003977)	PLEKHA3 (ENSPCTG00005003988)	TTN (ENSPCTG00005004468)
Blue whale	MODERN SPECIES	18	ENSBMSG00010005581	CHRNA1 (ENSBMSG00010005615)	CHN1 (ENSBMSG00010005726)	ATF2 (ENSBMSG00010005883) #7	ATP5MC3 (ENSBMSG00010005937) #8	LNPK (ENSBMSG00010005955) #12	EVX2 (ENSBMSG00010005974) #13	HOXD13 (ENSBMSG00010005980) #14	HOXD12 (ENSBMSG00010005987) #15	HOXD11 (ENSBMSG00010005993) #16	HOXD10 (ENSBMSG00010006002) #17	HOXD9 (ENSBMSG00010006014) #18	HOXD8 (ENSBMSG00010006022) #19	HOXD4 (ENSBMSG00010006036) #20	HOXD3 (ENSBMSG00010006046) #21	HOXD1 (ENSBMSG00010006055) #22	MTX2 (ENSBMSG00010006100) #23	ENSBMSG00010006149 ##25	NFE2L2 (ENSBMSG00010006157) #26	AGPS (ENSBMSG00010006175) #29	ENSBMSG00010006193 #28	ENSBMSG00010006199 #28	PDE11A (ENSBMSG00010006216) #32	ENSBMSG00010006255	ENSBMSG00010006266	RBM45 (ENSBMSG00010006279) #33	OSBPL6 (ENSBMSG00010006347)	PRKRA (ENSBMSG00010006442)	PJVK (ENSBMSG00010006471)	FKBP7 (ENSBMSG00010006490)	ENSBMSG00010006506
Pecora	ANCESTRAL SPECIES	24	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #28	ENSGT00390000010116.fc.b #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Percora_a	ANCESTRAL SPECIES	5	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #28	ENSGT00390000010116.fc.b #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Bovidae	ANCESTRAL SPECIES	8	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #28	ENSGT00390000010116.fc.b #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Bovinae	ANCESTRAL SPECIES	5	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #28	ENSGT00390000010116.fc.b #28	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Bos	ANCESTRAL SPECIES	6	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #25	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #28	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #28	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT01030000234916.g.b	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #28	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #28	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964
Cow	MODERN SPECIES	11	ATF2 (ENSBTAG00000002295) #7	ATP5MC3 (ENSBTAG00000002944) #8	ENSBTAG00000031711	LNPK (ENSBTAG00000018061) #12	ENSBTAG00000050237	ENSBTAG00000002009	EVX2 (ENSBTAG00000049537) #13	HOXD13 (ENSBTAG00000004313) #14	HOXD12 (ENSBTAG00000004314) #15	HOXD11 (ENSBTAG00000033330) #16	HOXD10 (ENSBTAG00000016030) #17	HOXD9 (ENSBTAG00000016033) #18	HOXD8 (ENSBTAG00000049845) #19	HOXD4 (ENSBTAG00000039581) #20	HOXD3 (ENSBTAG00000004835) #21	HOXD1 (ENSBTAG00000015840) #22	MTX2 (ENSBTAG00000006693) #23	HNRNPA3 (ENSBTAG00000021580) #25	NFE2L2 (ENSBTAG00000019255) #26	AGPS (ENSBTAG00000009897) #29	TTC30B (ENSBTAG00000027696) #28	TTC30A (ENSBTAG00000027694) #28	ENSBTAG00000049860	PDE11A (ENSBTAG00000016396) #32	CYCT (ENSBTAG00000039522)	RBM45 (ENSBTAG00000006168) #33	OSBPL6 (ENSBTAG00000014405)	PRKRA (ENSBTAG00000001096)	PJVK (ENSBTAG00000033254)	FKBP7 (ENSBTAG00000001097)	PLEKHA3 (ENSBTAG00000001098)
Hybrid Bos Indicus	MODERN SPECIES	11	CHN1 (ENSBIXG00005001962)	ATF2 (ENSBIXG00005001719) #7	ATP5MC3 (ENSBIXG00005029222) #8	ENSBIXG00005029239	LNPK (ENSBIXG00005005282) #12	ENSBIXG00005029245	ENSBIXG00005029246	EVX2 (ENSBIXG00005005288) #13	HOXD13 (ENSBIXG00005001519) #14	HOXD12 (ENSBIXG00005001517) #15	HOXD11 (ENSBIXG00005001515) #16	HOXD10 (ENSBIXG00005005289) #17	HOXD9 (ENSBIXG00005030437) #18	HOXD8 (ENSBIXG00005030431) #19	HOXD3 (ENSBIXG00005030419) #21	HOXD1 (ENSBIXG00005030413) #22	MTX2 (ENSBIXG00005030400) #23	ENSBIXG00005030356 #10	ENSBIXG00005030352	HNRNPA3 (ENSBIXG00005030333) #25	NFE2L2 (ENSBIXG00005030317) #26	AGPS (ENSBIXG00005030278) #29	ENSBIXG00005030257 #28	ENSBIXG00005030245	ENSBIXG00005030242 #28	PDE11A (ENSBIXG00005030175) #32	ENSBIXG00005030117	RBM45 (ENSBIXG00005030103) #33	OSBPL6 (ENSBIXG00005029906)	PRKRA (ENSBIXG00005029821)	PJVK (ENSBIXG00005029785)
Bos_a	ANCESTRAL SPECIES	4	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #28	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Domestic yak	MODERN SPECIES	11	CHRNA1 (ENSBGRG00000014839)	CHN1 (ENSBGRG00000015101)	ATF2 (ENSBGRG00000015648) #7	ATP5MC3 (ENSBGRG00000016024) #8	ENSBGRG00000016132	LNPK (ENSBGRG00000016182) #12	EVX2 (ENSBGRG00000016780) #13	HOXD13 (ENSBGRG00000016836) #14	HOXD12 (ENSBGRG00000016890) #15	HOXD11 (ENSBGRG00000016923) #16	HOXD10 (ENSBGRG00000016979) #17	HOXD9 (ENSBGRG00000017014) #18	HOXD8 (ENSBGRG00000017045) #19	ENSBGRG00000017167 #20	HOXD3 (ENSBGRG00000017255) #21	HOXD1 (ENSBGRG00000017303) #22	MTX2 (ENSBGRG00000017363) #23	ENSBGRG00000000202 #25	NFE2L2 (ENSBGRG00000000213) #26	AGPS (ENSBGRG00000000237) #29	ENSBGRG00000000256 #28	ENSBGRG00000000264	ENSBGRG00000000270 #28	PDE11A (ENSBGRG00000000288) #32	ENSBGRG00000000317	ENSBGRG00000000319	ENSBGRG00000000328	RBM45 (ENSBGRG00000000341) #33	ENSBGRG00000000374	OSBPL6 (ENSBGRG00000000437)	PRKRA (ENSBGRG00000000775)
American bison	MODERN SPECIES	3320	CHRNA1 (ENSBBBG00000017301)	CHN1 (ENSBBBG00000004302)	ATF2 (ENSBBBG00000017564) #7	ATP5MC3 (ENSBBBG00000017586) #8	ENSBBBG00000017593	LNPK (ENSBBBG00000017627) #12	ENSBBBG00000017634	ENSBBBG00000017638	HOXD13 (ENSBBBG00000017641) #14	HOXD12 (ENSBBBG00000017645) #15	HOXD10 (ENSBBBG00000006962) #17	HOXD9 (ENSBBBG00000017650) #18	HOXD8 (ENSBBBG00000017657) #19	HOXD4 (ENSBBBG00000017669) #20	HOXD3 (ENSBBBG00000017682) #21	HOXD1 (ENSBBBG00000017690) #22	ENSBBBG00000004376	ENSBBBG00000017700	MTX2 (ENSBBBG00000017733) #23	ENSBBBG00000007269 #25	NFE2L2 (ENSBBBG00000017780) #26	AGPS (ENSBBBG00000017817) #29	ENSBBBG00000007701 #28	ENSBBBG00000017832 #28	ENSBBBG00000017839	PDE11A (ENSBBBG00000017894) #32	ENSBBBG00000017912	RBM45 (ENSBBBG00000004406) #33	OSBPL6 (ENSBBBG00000018398)	PRKRA (ENSBBBG00000018426)	PJVK (ENSBBBG00000004525)
Caprinae	ANCESTRAL SPECIES	5	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT01010000228762	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #28	ENSGT00390000010116.fc.b #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020001216	CHN1 (ENSOARG00020000831)	ATF2 (ENSOARG00020000583) #7	ATP5MC3 (ENSOARG00020000538) #8	LNPK (ENSOARG00020000416) #12	ENSOARG00020000394	EVX2 (ENSOARG00020000381) #13	HOXD13 (ENSOARG00020000373) #14	HOXD12 (ENSOARG00020000357) #15	hoxd11 (ENSOARG00020000346) #16	HOXD10 (ENSOARG00020000330) #17	HOXD9 (ENSOARG00020000321) #18	HOXD8 (ENSOARG00020000297) #19	HOXD4 (ENSOARG00020000275) #20	HOXD3 (ENSOARG00020000257) #21	HOXD1 (ENSOARG00020000237) #22	MTX2 (ENSOARG00020000188) #23	HNRNPA3 (ENSOARG00020000123) #25	NFE2L2 (ENSOARG00020022726) #26	AGPS (ENSOARG00020022410) #29	ENSOARG00020022373 #28	ENSOARG00020022364 #28	PDE11A (ENSOARG00020022115) #32	ENSOARG00020022078	RBM45 (ENSOARG00020022028) #33	OSBPL6 (ENSOARG00020020986)	PRKRA (ENSOARG00020020855)	PJVK (ENSOARG00020020753)	FKBP7 (ENSOARG00020020704)	PLEKHA3 (ENSOARG00020020544)	ENSOARG00020020514
Goat	MODERN SPECIES	11	ENSCHIG00000012635	ATF2 (ENSCHIG00000011446) #7	ENSCHIG00000018041 #8	LNPK (ENSCHIG00000012313) #12	ENSCHIG00000025787	ENSCHIG00000004992	EVX2 (ENSCHIG00000026644) #13	HOXD13 (ENSCHIG00000009994) #14	HOXD12 (ENSCHIG00000014734) #15	HOXD11 (ENSCHIG00000026087) #16	HOXD10 (ENSCHIG00000011771) #17	HOXD9 (ENSCHIG00000023245) #18	HOXD8 (ENSCHIG00000013371) #19	HOXD4 (ENSCHIG00000019702) #20	HOXD3 (ENSCHIG00000011624) #21	HOXD1 (ENSCHIG00000017515) #22	MTX2 (ENSCHIG00000008892) #23	ENSCHIG00000015430 #25	NFE2L2 (ENSCHIG00000026055) #26	AGPS (ENSCHIG00000015256) #29	ENSCHIG00000011750 #28	ENSCHIG00000011716 #28	PDE11A (ENSCHIG00000016852) #32	ENSCHIG00000026156	RBM45 (ENSCHIG00000010687) #33	ENSCHIG00000017164	OSBPL6 (ENSCHIG00000008898)	PRKRA (ENSCHIG00000015333)	PJVK (ENSCHIG00000013011)	FKBP7 (ENSCHIG00000017480)	PLEKHA3 (ENSCHIG00000019515)
Siberian musk deer	MODERN SPECIES	342		ENSMMSG00000008116	ENSMMSG00000008102	ATF2 (ENSMMSG00000007713) #7	ENSMMSG00000007642 #8	LNPK (ENSMMSG00000007582) #12	EVX2 (ENSMMSG00000007555) #13	HOXD13 (ENSMMSG00000007541) #14	HOXD12 (ENSMMSG00000007530) #15	HOXD11 (ENSMMSG00000007513) #16	HOXD10 (ENSMMSG00000007495) #17	HOXD9 (ENSMMSG00000007480) #18	HOXD8 (ENSMMSG00000007407) #19	HOXD4 (ENSMMSG00000007365) #20	HOXD3 (ENSMMSG00000007343) #21	HOXD1 (ENSMMSG00000007322) #22	MTX2 (ENSMMSG00000007226) #23	ENSMMSG00000007068 ##25	NFE2L2 (ENSMMSG00000006992) #26	ENSMMSG00000006963	AGPS (ENSMMSG00000006894) #29	ENSMMSG00000006854 #28	ENSMMSG00000006819 #28	PDE11A (ENSMMSG00000006654) #32	ENSMMSG00000006624	RBM45 (ENSMMSG00000006596) #33	OSBPL6 (ENSMMSG00000006219)
Yarkand deer	MODERN SPECIES	26	ENSCHYG00000017575	CHN1 (ENSCHYG00000017015)	ATF2 (ENSCHYG00000016575) #7	ATP5MC3 (ENSCHYG00000016464) #8	ENSCHYG00000016417	ENSCHYG00000016391	LNPK (ENSCHYG00000016125) #12	HOXD13 (ENSCHYG00000015985) #14	HOXD12 (ENSCHYG00000015954) #15	ENSCHYG00000015846	HOXD10 (ENSCHYG00000015831) #17	HOXD9 (ENSCHYG00000015808) #18	HOXD8 (ENSCHYG00000015741) #19	HOXD4 (ENSCHYG00000015683) #20	HOXD3 (ENSCHYG00000015650) #21	HOXD1 (ENSCHYG00000015562) #22	MTX2 (ENSCHYG00000015392) #23	ENSCHYG00000015305	ENSCHYG00000015038 #25	NFE2L2 (ENSCHYG00000024719) #26	AGPS (ENSCHYG00000024578) #29	ENSCHYG00000024559 #28	ENSCHYG00000024550 #28	PDE11A (ENSCHYG00000024466) #32	ENSCHYG00000024445	ENSCHYG00000024431	RBM45 (ENSCHYG00000024364) #33	OSBPL6 (ENSCHYG00000023926)	PRKRA (ENSCHYG00000023726)	PJVK (ENSCHYG00000023643)	FKBP7 (ENSCHYG00000023614)
Suina	ANCESTRAL SPECIES	3	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a.e	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00390000010491.kb.a	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT01100000263532.A.a.a.a.b.c.b	ENSGT01100000263532.A.a.a.b.b.a.b
Pig	MODERN SPECIES	6	ENSSSCG00000022345	ATF2 (ENSSSCG00000038076) #7	ATP5MC3 (ENSSSCG00000015973) #8	LNPK (ENSSSCG00000015976) #12	ENSSSCG00000039002	ENSSSCG00000053760	EVX2 (ENSSSCG00000023146) #13	HOXD13 (ENSSSCG00000057890) #14	HOXD12 (ENSSSCG00000015980) #15	HOXD11 (ENSSSCG00000034741) #16	HOXD10 (ENSSSCG00000015981) #17	HOXD9 (ENSSSCG00000015982) #18	HOXD8 (ENSSSCG00000040349) #19	HOXD4 (ENSSSCG00000015984) #20	HOXD3 (ENSSSCG00000015985) #21	HOXD1 (ENSSSCG00000015986) #22	MTX2 (ENSSSCG00000022222) #23	ENSSSCG00000015988 ##25	NFE2L2 (ENSSSCG00000015987) #26	AGPS (ENSSSCG00000023983) #29	PDE11A (ENSSSCG00000038903) #32	ENSSSCG00000047774	RBM45 (ENSSSCG00000015996) #33	OSBPL6 (ENSSSCG00000023133)	PRKRA (ENSSSCG00000038254)	PJVK (ENSSSCG00000015998)	FKBP7 (ENSSSCG00000015999)	PLEKHA3 (ENSSSCG00000049025)	ENSSSCG00000036052	ENSSSCG00000038561	ENSSSCG00000034677
Chacoan peccary	MODERN SPECIES	88	CHRNA1 (ENSCWAG00000000173)	CHN1 (ENSCWAG00000000417)	ATF2 (ENSCWAG00000000507) #7	ENSCWAG00000000620 #8	LNPK (ENSCWAG00000000637) #12	ENSCWAG00000000677	EVX2 (ENSCWAG00000000686) #13	HOXD13 (ENSCWAG00000000704) #14	HOXD12 (ENSCWAG00000000716) #15	HOXD11 (ENSCWAG00000000728) #16	HOXD10 (ENSCWAG00000000737) #17	HOXD9 (ENSCWAG00000000750) #18	HOXD8 (ENSCWAG00000000766) #19	HOXD4 (ENSCWAG00000000799) #20	HOXD3 (ENSCWAG00000000815) #21	HOXD1 (ENSCWAG00000000831) #22	MTX2 (ENSCWAG00000000848) #23	HNRNPA3 (ENSCWAG00000000880) #25	NFE2L2 (ENSCWAG00000000916) #26	AGPS (ENSCWAG00000000957) #29	PDE11A (ENSCWAG00000001000) #32	ENSCWAG00000001084	RBM45 (ENSCWAG00000001104) #33	OSBPL6 (ENSCWAG00000001227)	PRKRA (ENSCWAG00000001459)	PJVK (ENSCWAG00000001480)	FKBP7 (ENSCWAG00000001502)	PLEKHA3 (ENSCWAG00000001517)	TTN (ENSCWAG00000002022)	ENSCWAG00000004059	ENSCWAG00000004104
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT00900000143154
Carnivora	ANCESTRAL SPECIES	17	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT00900000143154
Caniformia	ANCESTRAL SPECIES	14	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT00900000143154
Canidae	ANCESTRAL SPECIES	45	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a.g.b	ENSGT00940000156582 #7	ENSGT00940000154298.a.a.i #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.tb #28	ENSGT00390000010116.ub #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.L
Canis_lupus	ANCESTRAL SPECIES	39	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a.g.b	ENSGT00940000156582 #7	ENSGT00940000154298.a.a.i #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.tb #28	ENSGT00390000010116.ub #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.L
Dog	MODERN SPECIES	29	WIPF1 (ENSCAFG00845016036)	CHRNA1 (ENSCAFG00845016336)	CHN1 (ENSCAFG00845017147)	ATF2 (ENSCAFG00845017708) #7	ATP5MC3 (ENSCAFG00845018248) #8	ENSCAFG00845018368	LNPK (ENSCAFG00845018510) #12	EVX2 (ENSCAFG00845018704) #13	HOXD13 (ENSCAFG00845018741) #14	HOXD12 (ENSCAFG00845018775) #15	ENSCAFG00845018802 #16	HOXD9 (ENSCAFG00845018856) #18	HOXD10 (ENSCAFG00845019028) #17	HOXD4 (ENSCAFG00845019072) #20	HOXD3 (ENSCAFG00845019275) #21	HOXD1 (ENSCAFG00845019313) #22	MTX2 (ENSCAFG00845019381) #23	HNRNPA3 (ENSCAFG00845019864) #25	NFE2L2 (ENSCAFG00845020022) #26	AGPS (ENSCAFG00845020190) #29	TTC30A (ENSCAFG00845020493) #28	PDE11A (ENSCAFG00845020545) #32	ENSCAFG00845020768	RBM45 (ENSCAFG00845020808) #33	OSBPL6 (ENSCAFG00845021295)	PJVK (ENSCAFG00845022256)	ENSCAFG00845022360	FKBP7 (ENSCAFG00845022485)	PLEKHA3 (ENSCAFG00845022559)	TTN (ENSCAFG00845023220)	ENSCAFG00845025563
Dingo	MODERN SPECIES	339	ENSCAFG00020006110	ENSCAFG00020006118	ATF2 (ENSCAFG00020006131) #7	ENSCAFG00020006151 #8	ENSCAFG00020006176	LNPK (ENSCAFG00020006192) #12	EVX2 (ENSCAFG00020006206) #13	HOXD13 (ENSCAFG00020006212) #14	HOXD12 (ENSCAFG00020006216) #15	HOXD9 (ENSCAFG00020006227) #18	HOXD11 (ENSCAFG00020006229) #16	HOXD10 (ENSCAFG00020006239) #17	HOXD8 (ENSCAFG00020006244) #19	HOXD4 (ENSCAFG00020006256) #20	HOXD3 (ENSCAFG00020006263) #21	HOXD1 (ENSCAFG00020006270) #22	MTX2 (ENSCAFG00020006273) #23	ENSCAFG00020006299 ##25	NFE2L2 (ENSCAFG00020006313) #26	AGPS (ENSCAFG00020006351) #29	ENSCAFG00020006961 #28	ENSCAFG00020006963 #28	PDE11A (ENSCAFG00020006966) #32	RBM45 (ENSCAFG00020007013) #33	OSBPL6 (ENSCAFG00020007025)	ENSCAFG00020007071	PJVK (ENSCAFG00020007088)	FKBP7 (ENSCAFG00020007095)	PLEKHA3 (ENSCAFG00020007100)	ENSCAFG00020007110	ENSCAFG00020007118
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT00900000143154
Mustelinae	ANCESTRAL SPECIES	21	ENSGT00390000004153	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.A	ENSGT00440000038972
Ferret	MODERN SPECIES	359	CHN1 (ENSMPUG00000013977)	ATF2 (ENSMPUG00000013983) #7	ATP5MC3 (ENSMPUG00000013986) #8	LNPK (ENSMPUG00000014007) #12	EVX2 (ENSMPUG00000014012) #13	HOXD13 (ENSMPUG00000014022) #14	HOXD12 (ENSMPUG00000014025) #15	HOXD11 (ENSMPUG00000014029) #16	HOXD10 (ENSMPUG00000014049) #17	HOXD9 (ENSMPUG00000014053) #18	ENSMPUG00000014060 #19	ENSMPUG00000014067	HOXD4 (ENSMPUG00000014070) #20	HOXD3 (ENSMPUG00000014072) #21	ENSMPUG00000014080	HOXD1 (ENSMPUG00000014084) #22	ENSMPUG00000014088	MTX2 (ENSMPUG00000014094) #23	ENSMPUG00000014101	ENSMPUG00000014103 ##25	ENSMPUG00000014168 #26	ENSMPUG00000014172	AGPS (ENSMPUG00000014173) #29
American mink	MODERN SPECIES	222						LNPK (ENSNVIG00000007208) #12	EVX2 (ENSNVIG00000007198) #13	HOXD13 (ENSNVIG00000007186) #14	HOXD12 (ENSNVIG00000007175) #15	ENSNVIG00000007170 #16	HOXD10 (ENSNVIG00000007162) #17	HOXD9 (ENSNVIG00000007158) #18	ENSNVIG00000007149 #19	HOXD4 (ENSNVIG00000007138) #20	HOXD3 (ENSNVIG00000007128) #21	HOXD1 (ENSNVIG00000007113) #22	MTX2 (ENSNVIG00000007075) #23	HNRNPA3 (ENSNVIG00000007022) #25	NFE2L2 (ENSNVIG00000006995) #26	AGPS (ENSNVIG00000006950) #29	ENSNVIG00000006929	PDE11A (ENSNVIG00000006854) #32	ENSNVIG00000006839	RBM45 (ENSNVIG00000006823) #33	OSBPL6 (ENSNVIG00000006388)	PRKRA (ENSNVIG00000006320)	PJVK (ENSNVIG00000006274)	FKBP7 (ENSNVIG00000006271)	PLEKHA3 (ENSNVIG00000006265)	ENSNVIG00000006264	ENSNVIG00000006252
Ursidae	ANCESTRAL SPECIES	7	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a.m.b #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.b ##25	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Ursus	ANCESTRAL SPECIES	4	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a.m.b #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.b ##25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.A	ENSGT00440000038972
American black bear	MODERN SPECIES	3042							EVX2 (ENSUAMG00000025680) #13	HOXD13 (ENSUAMG00000025683) #14	HOXD12 (ENSUAMG00000025684) #15	HOXD11 (ENSUAMG00000025686) #16	HOXD10 (ENSUAMG00000025688) #17	HOXD9 (ENSUAMG00000025690) #18	HOXD8 (ENSUAMG00000025693) #19	HOXD4 (ENSUAMG00000025697) #20	HOXD3 (ENSUAMG00000025698) #21	HOXD1 (ENSUAMG00000025700) #22
Giant Panda	MODERN SPECIES	11	WIPF1 (ENSAMEG00000012269)	CHRNA1 (ENSAMEG00000012277)	CHN1 (ENSAMEG00000012304)	ATF2 (ENSAMEG00000012333) #7	ATP5MC3 (ENSAMEG00000012367) #8	LNPK (ENSAMEG00000001869) #12	EVX2 (ENSAMEG00000001868) #13	HOXD13 (ENSAMEG00000001865) #14	HOXD12 (ENSAMEG00000023609) #15	ENSAMEG00000025193 #16	HOXD10 (ENSAMEG00000001849) #17	HOXD9 (ENSAMEG00000029987) #18	HOXD8 (ENSAMEG00000023565) #19	HOXD4 (ENSAMEG00000025663) #20	HOXD3 (ENSAMEG00000026957) #21	HOXD1 (ENSAMEG00000028345) #22	MTX2 (ENSAMEG00000001799) #23	ENSAMEG00000019906	HNRNPA3 (ENSAMEG00000011920) #25	NFE2L2 (ENSAMEG00000011937) #26	AGPS (ENSAMEG00000011950) #29	PDE11A (ENSAMEG00000000902) #32	ENSAMEG00000023664	RBM45 (ENSAMEG00000000896) #33	OSBPL6 (ENSAMEG00000000825)	PRKRA (ENSAMEG00000000803)	PJVK (ENSAMEG00000000801)	FKBP7 (ENSAMEG00000027885)	PLEKHA3 (ENSAMEG00000000774)	ENSAMEG00000030666	ENSAMEG00000029399
Felidae	ANCESTRAL SPECIES	15	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.vb #28	ENSGT00390000010116.wb #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.A.a.a.a.b.c.a
Panthera	ANCESTRAL SPECIES	9	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.vb #28	ENSGT00390000010116.wb #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.A.a.a.a.b.c.a
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.vb #28	ENSGT00390000010116.wb #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.A.a.a.a.b.c.a
lion	MODERN SPECIES	8	WIPF1 (ENSPLOG00000022385)	CHRNA1 (ENSPLOG00000022353)	CHN1 (ENSPLOG00000022311)	ATF2 (ENSPLOG00000022276) #7	ATP5MC3 (ENSPLOG00000022249) #8	LNPK (ENSPLOG00000022229) #12	EVX2 (ENSPLOG00000022219) #13	HOXD13 (ENSPLOG00000022213) #14	HOXD12 (ENSPLOG00000022207) #15	HOXD11 (ENSPLOG00000022202) #16	HOXD10 (ENSPLOG00000022198) #17	HOXD9 (ENSPLOG00000022195) #18	HOXD8 (ENSPLOG00000022192) #19	HOXD4 (ENSPLOG00000022180) #20	HOXD3 (ENSPLOG00000022176) #21	HOXD1 (ENSPLOG00000022171) #22	MTX2 (ENSPLOG00000022148) #23	ENSPLOG00000022134 #25	NFE2L2 (ENSPLOG00000022123) #26	AGPS (ENSPLOG00000022055) #29	ENSPLOG00000022046 #28	ENSPLOG00000022045 #28	PDE11A (ENSPLOG00000022012) #32	RBM45 (ENSPLOG00000021986) #33	OSBPL6 (ENSPLOG00000021601)	PRKRA (ENSPLOG00000021458)	PJVK (ENSPLOG00000021374)	FKBP7 (ENSPLOG00000021347)	PLEKHA3 (ENSPLOG00000021313)	ENSPLOG00000007181	CCDC141 (ENSPLOG00000004750)
leopard	MODERN SPECIES	1	WIPF1 (ENSPPRG00000002779)	CHRNA1 (ENSPPRG00000002357)	CHN1 (ENSPPRG00000001854)	ATF2 (ENSPPRG00000001271) #7	ATP5MC3 (ENSPPRG00000000490) #8	LNPK (ENSPPRG00000000436) #12	EVX2 (ENSPPRG00000000389) #13	HOXD13 (ENSPPRG00000000349) #14	HOXD12 (ENSPPRG00000000300) #15	HOXD11 (ENSPPRG00000000168) #16	HOXD10 (ENSPPRG00000000139) #17	HOXD9 (ENSPPRG00000000084) #18	HOXD8 (ENSPPRG00000022672) #19	HOXD4 (ENSPPRG00000022845) #20	HOXD3 (ENSPPRG00000022847) #21	HOXD1 (ENSPPRG00000023009) #22	MTX2 (ENSPPRG00000022475) #23	ENSPPRG00000022322 #25	NFE2L2 (ENSPPRG00000020872) #26	AGPS (ENSPPRG00000020328) #29	ENSPPRG00000021116 #28	ENSPPRG00000021101 #28	PDE11A (ENSPPRG00000019135) #32	ENSPPRG00000017216	RBM45 (ENSPPRG00000017073) #33	OSBPL6 (ENSPPRG00000015447)	ENSPPRG00000011982	PJVK (ENSPPRG00000011834)	FKBP7 (ENSPPRG00000011718)	PLEKHA3 (ENSPPRG00000011583)	TTN (ENSPPRG00000010584)
Cat	MODERN SPECIES	239	WIPF1 (ENSFCAG00000014400)	CHRNA1 (ENSFCAG00000014103)	CHN1 (ENSFCAG00000039893)	ATF2 (ENSFCAG00000027595) #7	ATP5MC3 (ENSFCAG00000012719) #8	LNPK (ENSFCAG00000033171) #12	EVX2 (ENSFCAG00000023892) #13	HOXD13 (ENSFCAG00000030694) #14	HOXD12 (ENSFCAG00000044671) #15	HOXD11 (ENSFCAG00000030594) #16	HOXD10 (ENSFCAG00000006264) #17	HOXD9 (ENSFCAG00000035038) #18	HOXD8 (ENSFCAG00000034788) #19	HOXD4 (ENSFCAG00000045772) #20	HOXD3 (ENSFCAG00000022371) #21	HOXD1 (ENSFCAG00000042171) #22	MTX2 (ENSFCAG00000030099) #23	HNRNPA3 (ENSFCAG00000012146) #25	NFE2L2 (ENSFCAG00000012147) #26	AGPS (ENSFCAG00000022316) #29	ENSFCAG00000048732 #28	ENSFCAG00000049217 #28	PDE11A (ENSFCAG00000022207) #32	RBM45 (ENSFCAG00000018793) #33	OSBPL6 (ENSFCAG00000012535)	PRKRA (ENSFCAG00000031042)	PJVK (ENSFCAG00000018124)	FKBP7 (ENSFCAG00000012540)	PLEKHA3 (ENSFCAG00000025945)	TTN (ENSFCAG00000046559)	ENSFCAG00000032293
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.A	ENSGT00440000038972
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.a ##25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.A	ENSGT00440000038972
Megabat	MODERN SPECIES	1085								LNPK (ENSPVAG00000017411) #12	EVX2 (ENSPVAG00000017414) #13	HOXD13 (ENSPVAG00000017415) #14	HOXD12 (ENSPVAG00000017416) #15	HOXD11 (ENSPVAG00000017417) #16	HOXD10 (ENSPVAG00000017418) #17	HOXD8 (ENSPVAG00000017420) #19	HOXD3 (ENSPVAG00000017421) #21	HOXD1 (ENSPVAG00000017425) #22	MTX2 (ENSPVAG00000017426) #23
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.a ##25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.A.a.a.a.b.c.b	ENSGT01100000263532.A.a.a.b.b.b
Microbat	MODERN SPECIES	942	WIPF1 (ENSMLUG00000022385)	CHRNA1 (ENSMLUG00000015698)	CHN1 (ENSMLUG00000015709)	ATF2 (ENSMLUG00000015718) #7	ENSMLUG00000012822 #8	LNPK (ENSMLUG00000006972) #12	ENSMLUG00000022478	EVX2 (ENSMLUG00000006989) #13	HOXD13 (ENSMLUG00000006997) #14	HOXD12 (ENSMLUG00000007009) #15	HOXD11 (ENSMLUG00000007030) #16	HOXD10 (ENSMLUG00000007048) #17	HOXD8 (ENSMLUG00000028864) #19	HOXD4 (ENSMLUG00000012508) #20	HOXD3 (ENSMLUG00000012510) #21	ENSMLUG00000029447 #22	MTX2 (ENSMLUG00000015966) #23	ENSMLUG00000003906 ##25	NFE2L2 (ENSMLUG00000003909) #26	ENSMLUG00000025480	AGPS (ENSMLUG00000005113) #29	ENSMLUG00000005126 #28	ENSMLUG00000005133 #28	ENSMLUG00000028755	PDE11A (ENSMLUG00000005135) #32	RBM45 (ENSMLUG00000005782) #33	OSBPL6 (ENSMLUG00000005787)	ENSMLUG00000022423	ENSMLUG00000005810	PJVK (ENSMLUG00000005814)	FKBP7 (ENSMLUG00000005816)
Greater horseshoe bat	MODERN SPECIES	26	WIPF1 (ENSRFEG00010000762)	CHRNA1 (ENSRFEG00010000686)	CHN1 (ENSRFEG00010000595)	ATF2 (ENSRFEG00010000479) #7	ENSRFEG00010000353 #8	LNPK (ENSRFEG00010000270) #12	EVX2 (ENSRFEG00010000230) #13	HOXD13 (ENSRFEG00010022173) #14	HOXD12 (ENSRFEG00010022172) #15	HOXD11 (ENSRFEG00010022171) #16	HOXD10 (ENSRFEG00010022170) #17	HOXD9 (ENSRFEG00010022169) #18	HOXD8 (ENSRFEG00010022168) #19	HOXD4 (ENSRFEG00010022166) #20	HOXD3 (ENSRFEG00010022165) #21	HOXD1 (ENSRFEG00010022164) #22	MTX2 (ENSRFEG00010022163) #23	ENSRFEG00010022161 ##25	NFE2L2 (ENSRFEG00010022160) #26	ENSRFEG00010022158 #29	ENSRFEG00010022157 #28	ENSRFEG00010022156 #28	PDE11A (ENSRFEG00010022154) #32	ENSRFEG00010022153	RBM45 (ENSRFEG00010022152) #33	OSBPL6 (ENSRFEG00010022151)	PRKRA (ENSRFEG00010022150)	DFNB59 (ENSRFEG00010022149)	FKBP7 (ENSRFEG00010022148)	PLEKHA3 (ENSRFEG00010022147)	ENSRFEG00010020094
Equus	ANCESTRAL SPECIES	18	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00390000005569.x.a.a.b	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a.a.b.a.b #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.A	ENSGT00440000038972
Horse	MODERN SPECIES	9	WIPF1 (ENSECAG00000015984)	CHRNA1 (ENSECAG00000019649)	CHN1 (ENSECAG00000008277)	ATF2 (ENSECAG00000018723) #7	ATP5MC3 (ENSECAG00000008514) #8	LNPK (ENSECAG00000008534) #12	ENSECAG00000043913	EVX2 (ENSECAG00000019796) #13	HOXD13 (ENSECAG00000020388) #14	HOXD11 (ENSECAG00000003045) #16	HOXD10 (ENSECAG00000020599) #17	HOXD9 (ENSECAG00000021845) #18	HOXD8 (ENSECAG00000021980) #19	HOXD4 (ENSECAG00000038429) #20	HOXD3 (ENSECAG00000022129) #21	HOXD1 (ENSECAG00000035437) #22	MTX2 (ENSECAG00000022464) #23	HNRNPA3 (ENSECAG00000059976) #25	NFE2L2 (ENSECAG00000005675) #26	AGPS (ENSECAG00000008695) #29	ENSECAG00000051775	ENSECAG00000000927 #28	PDE11A (ENSECAG00000004445) #32	ENSECAG00000057854	CYCT (ENSECAG00000016170)	RBM45 (ENSECAG00000017129) #33	OSBPL6 (ENSECAG00000020078)	PRKRA (ENSECAG00000024263)	PJVK (ENSECAG00000007310)	FKBP7 (ENSECAG00000008092)	PLEKHA3 (ENSECAG00000010715)
Donkey	MODERN SPECIES	24	CHRNA1 (ENSEASG00005022581)	CHN1 (ENSEASG00005022579)	ATF2 (ENSEASG00005022575) #7	ATP5MC3 (ENSEASG00005022573) #8	LNPK (ENSEASG00005022567) #12	ENSEASG00005022564	EVX2 (ENSEASG00005022562) #13	HOXD13 (ENSEASG00005029242) #14	HOXD12 (ENSEASG00005022555) #15	HOXD11 (ENSEASG00005030904) #16	HOXD10 (ENSEASG00005022552) #17	HOXD9 (ENSEASG00005023994) #18	HOXD8 (ENSEASG00005033905) #19	HOXD4 (ENSEASG00005024806) #20	HOXD3 (ENSEASG00005022544) #21	HOXD1 (ENSEASG00005030887) #22	MTX2 (ENSEASG00005022537) #23	HNRNPA3 (ENSEASG00005022530) #25	NFE2L2 (ENSEASG00005028739) #26	ENSEASG00005026944 #28	AGPS (ENSEASG00005022514) #29	ENSEASG00005028303 #28	PDE11A (ENSEASG00005022489) #32	ENSEASG00005026887	RBM45 (ENSEASG00005022475) #33	OSBPL6 (ENSEASG00005022455)	PRKRA (ENSEASG00005022436)	PJVK (ENSEASG00005022430)	FKBP7 (ENSEASG00005022426)	PLEKHA3 (ENSEASG00005022419)	ENSEASG00005024821
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT01100000263523.A
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a.e #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.A.a.a.a.b.c.b	ENSGT01100000263523.A
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00390000004153	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a.e #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.o #28	ENSGT00390000010116.p #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.A.a.a.a.b.c.b
Hyrax	MODERN SPECIES	9547										EVX2 (ENSPCAG00000015601) #13	HOXD12 (ENSPCAG00000015624) #15	HOXD10 (ENSPCAG00000015648) #17	ENSPCAG00000015753 #19	HOXD4 (ENSPCAG00000015781) #20	HOXD3 (ENSPCAG00000015801) #21	HOXD1 (ENSPCAG00000015869) #22
Xenarthra	ANCESTRAL SPECIES	11	ENSGT00390000013474.a	ENSGT00390000004153	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147.m.a.a #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000164264	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT01100000263523.A	ENSGT00440000038972
Armadillo	MODERN SPECIES	3580	ENSDNOG00000033898	CHRNA1 (ENSDNOG00000016153)	CHN1 (ENSDNOG00000037568)	ATF2 (ENSDNOG00000015229) #7	ENSDNOG00000044678 #8	LNPK (ENSDNOG00000039308) #12	ENSDNOG00000045361	EVX2 (ENSDNOG00000019797) #13	HOXD13 (ENSDNOG00000019799) #14	HOXD12 (ENSDNOG00000047700) #15	HOXD11 (ENSDNOG00000044260) #16	HOXD10 (ENSDNOG00000034389) #17	HOXD8 (ENSDNOG00000036145) #19	HOXD4 (ENSDNOG00000019805) #20	HOXD3 (ENSDNOG00000035593) #21	HOXD1 (ENSDNOG00000019807) #22	MTX2 (ENSDNOG00000034659) #23	HNRNPA3 (ENSDNOG00000019022) #25	NFE2L2 (ENSDNOG00000019020) #26	AGPS (ENSDNOG00000032919) #29	ENSDNOG00000044838 #28	ENSDNOG00000032224 #28	ENSDNOG00000016006	RBM45 (ENSDNOG00000001973) #33	OSBPL6 (ENSDNOG00000016352)	PRKRA (ENSDNOG00000019701)	PJVK (ENSDNOG00000019700)	FKBP7 (ENSDNOG00000035521)	PLEKHA3 (ENSDNOG00000002717)	ENSDNOG00000031177	ENSDNOG00000048097
Sloth	MODERN SPECIES	12135																HOXD1 (ENSCHOG00000004405) #22
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000173501	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C.k #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.A	ENSGT00440000038972
Opossum	MODERN SPECIES	3	CHRNA1 (ENSMODG00000009414)	CHN1 (ENSMODG00000009464)	ATF2 (ENSMODG00000009514) #7	ENSMODG00000009520 #8	ENSMODG00000047401	ENSMODG00000009536 #12	EVX2 (ENSMODG00000009546) #13	HOXD13 (ENSMODG00000009550) #14	HOXD12 (ENSMODG00000024741) #15	HOXD11 (ENSMODG00000009565) #16	HOXD10 (ENSMODG00000009577) #17	HOXD9 (ENSMODG00000009591) #18	HOXD8 (ENSMODG00000009593) #19	HOXD4 (ENSMODG00000009598) #20	HOXD3 (ENSMODG00000046524) #21	HOXD1 (ENSMODG00000009604) #22	MTX2 (ENSMODG00000009617) #23	NFE2L2 (ENSMODG00000009624) #26	AGPS (ENSMODG00000009686) #29	ENSMODG00000048757	ENSMODG00000048807 #28	PDE11A (ENSMODG00000036430) #32	ENSMODG00000037708	ENSMODG00000029563	RBM45 (ENSMODG00000009742) #33	OSBPL6 (ENSMODG00000009796)	PRKRA (ENSMODG00000009823)	PJVK (ENSMODG00000009854)	FKBP7 (ENSMODG00000009862)	PLEKHA3 (ENSMODG00000009871)	ENSMODG00000039210
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000173501	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C.k #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.A	ENSGT00440000038972
Diprotodontia	ANCESTRAL SPECIES	11	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000173501	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C.k #23	ENSGT00940000153147.o.a #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263532.A.a.a.a.b.c.b.a
Diprotodontia_a	ANCESTRAL SPECIES	9	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a.a #8	ENSGT00390000001859 #12	ENSGT00940000173501	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C.k.a #23	ENSGT00940000153147.o.a #25	ENSGT00950000182892.a.a.b #26	ENSGT00390000006051.d.b.a.a	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850.fb	ENSGT01100000263532.C.c.b
Common wonbat	MODERN SPECIES	1018	WIPF1 (ENSVURG00010019295)	CHRNA1 (ENSVURG00010019276)	CHN1 (ENSVURG00010019258)	ATF2 (ENSVURG00010019225) #7	ENSVURG00010019213 #8	LNPK (ENSVURG00010019192) #12	EVX2 (ENSVURG00010019179) #13	HOXD13 (ENSVURG00010019176) #14	HOXD12 (ENSVURG00010019173) #15	ENSVURG00010019168 #16	HOXD10 (ENSVURG00010019165) #17	HOXD9 (ENSVURG00010019159) #18	HOXD8 (ENSVURG00010019156) #19	HOXD4 (ENSVURG00010019150) #20	HOXD3 (ENSVURG00010019148) #21	HOXD1 (ENSVURG00010019147) #22	ENSVURG00010019141 #23	ENSVURG00010019134	ENSVURG00010019105 #25	NFE2L2 (ENSVURG00010019096) #26	ENSVURG00010019089	AGPS (ENSVURG00010018947) #29	ENSVURG00010018908 #28	PDE11A (ENSVURG00010018883) #32	ENSVURG00010018867	RBM45 (ENSVURG00010018862) #33	OSBPL6 (ENSVURG00010018808)	PRKRA (ENSVURG00010018771)	PJVK (ENSVURG00010018750)	FKBP7 (ENSVURG00010018739)	ENSVURG00010018731
koala	MODERN SPECIES	40	CHRNA1 (ENSPCIG00000026290)	CHN1 (ENSPCIG00000026288)	ATF2 (ENSPCIG00000026284) #7	ENSPCIG00000026281 #8	LNPK (ENSPCIG00000029137) #12	ENSPCIG00000034586	EVX2 (ENSPCIG00000029139) #13	HOXD13 (ENSPCIG00000029140) #14	HOXD12 (ENSPCIG00000029141) #15	ENSPCIG00000034132 #16	HOXD10 (ENSPCIG00000029143) #17	HOXD9 (ENSPCIG00000033878) #18	HOXD8 (ENSPCIG00000029145) #19	HOXD3 (ENSPCIG00000026502) #21	HOXD4 (ENSPCIG00000026503) #20	HOXD1 (ENSPCIG00000026501) #22	MTX2 (ENSPCIG00000006277) #23	ENSPCIG00000034180	ENSPCIG00000035345	ENSPCIG00000025443 #25	NFE2L2 (ENSPCIG00000025438) #26	ENSPCIG00000025432	AGPS (ENSPCIG00000025418) #29	ENSPCIG00000025413 #28	PDE11A (ENSPCIG00000025405) #32	RBM45 (ENSPCIG00000025402) #33	ENSPCIG00000025391	OSBPL6 (ENSPCIG00000025378)	PRKRA (ENSPCIG00000025371)	PJVK (ENSPCIG00000025370)	FKBP7 (ENSPCIG00000025369)
Wallaby	MODERN SPECIES	11987																HOXD1 (ENSMEUG00000005962) #22
Tasmanian devil	MODERN SPECIES	2	WIPF1 (ENSSHAG00000005304)	CHRNA1 (ENSSHAG00000007749)	CHN1 (ENSSHAG00000008483)	ATF2 (ENSSHAG00000029247) #7	ATP5MC3 (ENSSHAG00000028674) #8	LNPK (ENSSHAG00000031133) #12	EVX2 (ENSSHAG00000015873) #13	HOXD13 (ENSSHAG00000015915) #14	HOXD12 (ENSSHAG00000021387) #15	HOXD11 (ENSSHAG00000021515) #16	HOXD10 (ENSSHAG00000016004) #17	HOXD9 (ENSSHAG00000021426) #18	HOXD8 (ENSSHAG00000026470) #19	HOXD3 (ENSSHAG00000024332) #21	HOXD4 (ENSSHAG00000024760) #20	HOXD1 (ENSSHAG00000016187) #22	MTX2 (ENSSHAG00000016381) #23	HNRNPA3 (ENSSHAG00000022116) #25	NFE2L2 (ENSSHAG00000018277) #26	ENSSHAG00000022926 #28	AGPS (ENSSHAG00000018507) #29	PDE11A (ENSSHAG00000030320) #32	ENSSHAG00000005285	RBM45 (ENSSHAG00000005667) #33	OSBPL6 (ENSSHAG00000007874)	PRKRA (ENSSHAG00000028806)	PJVK (ENSSHAG00000010083)	FKBP7 (ENSSHAG00000010178)	PLEKHA3 (ENSSHAG00000010292)	ENSSHAG00000026623	ENSSHAG00000021730
Platypus	MODERN SPECIES	20	ENSOANG00000008606	CHRNA1 (ENSOANG00000008607)	CHN1 (ENSOANG00000008609)	ATF2 (ENSOANG00000008612) #7	ATP5MC3 (ENSOANG00000046084) #8	LNPK (ENSOANG00000008614) #12	EVX2 (ENSOANG00000042825) #13	HOXD13 (ENSOANG00000043790) #14	HOXD12 (ENSOANG00000004743) #15	HOXD11 (ENSOANG00000048827) #16	HOXD10 (ENSOANG00000037187) #17	HOXD9 (ENSOANG00000008615) #18	HOXD8 (ENSOANG00000036079) #19	HOXD4 (ENSOANG00000037495) #20	HOXD3 (ENSOANG00000038024) #21	HOXD1 (ENSOANG00000043961) #22	MTX2 (ENSOANG00000008621) #23	HNRNPA3 (ENSOANG00000008622) #25	NFE2L2 (ENSOANG00000039992) #26	AGPS (ENSOANG00000008624) #29	ENSOANG00000008625 #28	PDE11A (ENSOANG00000008626) #32	OSBPL6 (ENSOANG00000008628)	PRKRA (ENSOANG00000008630)	PJVK (ENSOANG00000008632)	FKBP7 (ENSOANG00000044696)	PLEKHA3 (ENSOANG00000008635)	ENSOANG00000045033	ENSOANG00000045923	ENSOANG00000043772	ENSOANG00000008636
Sauria	ANCESTRAL SPECIES		ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.F
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Episquamata	ANCESTRAL SPECIES		ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Laterata	ANCESTRAL SPECIES	30	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.F
Common wall lizard	MODERN SPECIES		WIPF1 (ENSPMRG00000000116)	CHRNA1 (ENSPMRG00000000100)	CHN1 (ENSPMRG00000004341)	ATF2 (ENSPMRG00000004321) #7	ENSPMRG00000004311 #8	ENSPMRG00000004309	LNPK (ENSPMRG00000004264) #12	EVX2 (ENSPMRG00000004255) #13	HOXD13 (ENSPMRG00000004253) #14	HOXD12 (ENSPMRG00000004249) #15	HOXD11 (ENSPMRG00000004246) #16	HOXD10 (ENSPMRG00000004241) #17	HOXD8 (ENSPMRG00000004233) #19	HOXD4 (ENSPMRG00000004227) #20	HOXD3 (ENSPMRG00000004224) #21	HOXD1 (ENSPMRG00000004218) #22	MTX2 (ENSPMRG00000004174) #23	HNRNPA3 (ENSPMRG00000004153) #25	NFE2L2 (ENSPMRG00000004147) #26	AGPS (ENSPMRG00000004129) #29	ENSPMRG00000004125 #28	PDE11A (ENSPMRG00000004113) #32	ENSPMRG00000004105	OSBPL6 (ENSPMRG00000003515)	ENSPMRG00000003417	PJVK (ENSPMRG00000003405)	FKBP7 (ENSPMRG00000003396)	PLEKHA3 (ENSPMRG00000003392)	ENSPMRG00000003385	ENSPMRG00000003374	ENSPMRG00000003366
Argentine black and white tegu	MODERN SPECIES	18	WIPF1 (ENSSMRG00000018198)	CHRNA1 (ENSSMRG00000018200)	CHN1 (ENSSMRG00000018201)	ATF2 (ENSSMRG00000018203) #7	ENSSMRG00000018204 #8	LNPK (ENSSMRG00000018206) #12	EVX2 (ENSSMRG00000018207) #13	HOXD13 (ENSSMRG00000018208) #14	HOXD12 (ENSSMRG00000018209) #15	HOXD11 (ENSSMRG00000018210) #16	HOXD10 (ENSSMRG00000018211) #17	HOXD9 (ENSSMRG00000018212) #18	HOXD8 (ENSSMRG00000018213) #19	HOXD3 (ENSSMRG00000018215) #21	HOXD4 (ENSSMRG00000018216) #20	HOXD1 (ENSSMRG00000018217) #22	MTX2 (ENSSMRG00000018218) #23	ENSSMRG00000018224	NFE2L2 (ENSSMRG00000018226) #26	AGPS (ENSSMRG00000018227) #29	ENSSMRG00000018228	ENSSMRG00000018230	ENSSMRG00000018231 #33	ENSSMRG00000018232 #33	OSBPL6 (ENSSMRG00000018233)	PRKRA (ENSSMRG00000018234)	PJVK (ENSSMRG00000018235)	ENSSMRG00000018236	FKBP7 (ENSSMRG00000018237)	PLEKHA3 (ENSSMRG00000018238)	ENSSMRG00000018239
Toxicofera	ANCESTRAL SPECIES	10	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a.c	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.j #28	ENSGT00390000010116.i #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263532.A.a.a.a.b.c.b
Elapidae	ANCESTRAL SPECIES		ENSGT00390000013474.a	ENSGT00390000004153	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a.c	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.j #28	ENSGT00390000010116.i #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a.d	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263532.B
Elapidae_a	ANCESTRAL SPECIES	5	ENSGT00390000004153	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a.c	ENSGT01000000218334	ENSGT00940000156582 #7	ENSGT00940000154298.a.a.lc #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.j #28	ENSGT00390000010116.i #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a.d	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.I.a.a.b
Acanthophiinae	ANCESTRAL SPECIES	7	ENSGT00390000013474.a	ENSGT00390000004153	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a.c	ENSGT00940000156582 #7	ENSGT00940000154298.a.a.lc #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116.j #28	ENSGT00390000010116.i #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a.d	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.I.a.a.b
Eastern brown snake	MODERN SPECIES	7	SCRN3 (ENSPTXG00000000283)	GPR155 (ENSPTXG00000000262)	ENSPTXG00000000245	CHRNA1 (ENSPTXG00000000220)	CHN1 (ENSPTXG00000000161)	ATF2 (ENSPTXG00000000105) #7	ENSPTXG00000000082 #8	LNPK (ENSPTXG00000000058) #12	EVX2 (ENSPTXG00000000029) #13	HOXD13 (ENSPTXG00000000024) #14	HOXD10 (ENSPTXG00000003623) #17	HOXD9 (ENSPTXG00000003620) #18	HOXD8 (ENSPTXG00000003619) #19	HOXD4 (ENSPTXG00000003615) #20	HOXD3 (ENSPTXG00000003613) #21	HOXD1 (ENSPTXG00000003611) #22	MTX2 (ENSPTXG00000003605) #23	ENSPTXG00000003601	NFE2L2 (ENSPTXG00000003594) #26	AGPS (ENSPTXG00000003592) #29	ENSPTXG00000003590 #28	ENSPTXG00000003587 #28	PDE11A (ENSPTXG00000003586) #32	ENSPTXG00000003584	OSBPL6 (ENSPTXG00000003580)	PRKRA (ENSPTXG00000003579)	PJVK (ENSPTXG00000003578)	FKBP7 (ENSPTXG00000003577)	ENSPTXG00000003576	ENSPTXG00000003575	ENSPTXG00000003574
Mainland tiger snake	MODERN SPECIES	93	GPR155 (ENSNSUG00000011455)	ENSNSUG00000011452	CHRNA1 (ENSNSUG00000011450)	CHN1 (ENSNSUG00000011448)	ATF2 (ENSNSUG00000011447) #7	ENSNSUG00000011445 #8	LNPK (ENSNSUG00000011230) #12	EVX2 (ENSNSUG00000011227) #13	HOXD13 (ENSNSUG00000011225) #14	HOXD11 (ENSNSUG00000011224) #16	HOXD10 (ENSNSUG00000011221) #17	HOXD9 (ENSNSUG00000011220) #18	HOXD8 (ENSNSUG00000011219) #19	HOXD4 (ENSNSUG00000011217) #20	HOXD3 (ENSNSUG00000011215) #21	HOXD1 (ENSNSUG00000011213) #22	MTX2 (ENSNSUG00000011211) #23
Blue-lipped sea krait	MODERN SPECIES	3112												ENSLLTG00000006536	HOXD9 (ENSLLTG00000006509) #18	HOXD8 (ENSLLTG00000006484) #19	HOXD4 (ENSLLTG00000010444) #20	HOXD1 (ENSLLTG00000010428) #22
Indian cobra	MODERN SPECIES		ENSNNAG00000000121	ENSNNAG00000000119	ENSNNAG00000000117	ENSNNAG00000000114	ATF2 (ENSNNAG00000000112) #7	ATP5MC3 (ENSNNAG00000000110) #8	LNPK (ENSNNAG00000000108) #12	EVX2 (ENSNNAG00000000104) #13	HOXD13 (ENSNNAG00000000102) #14	HOXD11 (ENSNNAG00000000101) #16	HOXD10 (ENSNNAG00000000100) #17	HOXD9 (ENSNNAG00000000098) #18	HOXD8 (ENSNNAG00000000096) #19	HOXD4 (ENSNNAG00000000094) #20	HOXD3 (ENSNNAG00000000093) #21	HOXD1 (ENSNNAG00000000092) #22	ENSNNAG00000000090	MTX2 (ENSNNAG00000000088) #23	ENSNNAG00000000087	NFE2L2 (ENSNNAG00000000084) #26	AGPS (ENSNNAG00000000082) #29	ENSNNAG00000000080 #28	PDE11A (ENSNNAG00000000076) #32	ENSNNAG00000000074	PRKRA (ENSNNAG00000000071)	OSBPL6 (ENSNNAG00000000050)	PJVK (ENSNNAG00000000041)	FKBP7 (ENSNNAG00000000038)	PLEKHA3 (ENSNNAG00000000036)	ENSNNAG00000000033	ENSNNAG00000000032
Lizard	MODERN SPECIES	970						ENSACAG00000044334	LNPK (ENSACAG00000017917) #12	EVX2 (ENSACAG00000017916) #13	HOXD13 (ENSACAG00000039935) #14	HOXD12 (ENSACAG00000017914) #15	HOXD11 (ENSACAG00000007282) #16	HOXD10 (ENSACAG00000017910) #17	HOXD8 (ENSACAG00000044230) #19	HOXD4 (ENSACAG00000017905) #20	HOXD3 (ENSACAG00000017904) #21	HOXD1 (ENSACAG00000006543) #22	MTX2 (ENSACAG00000006488) #23
Archelosauria	ANCESTRAL SPECIES	8	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.E
Archosauria	ANCESTRAL SPECIES	6	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.E	ENSGT01100000263523.I.b
Aves	ANCESTRAL SPECIES	8	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.F
Neognathae	ANCESTRAL SPECIES	6	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.F
Galloanserae	ANCESTRAL SPECIES	7	ENSGT00910000144296.p	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653.c.a #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.E.q	ENSGT01100000263523.I.a.a.b	ENSGT01100000263523.J
Anatidae	ANCESTRAL SPECIES	10	ENSGT00910000144296.p	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653.c.a #19	ENSGT00940000160027 #21	ENSGT00940000157270 #20	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.E.q	ENSGT01100000263523.I.a.a.b
Pink-footed goose	MODERN SPECIES	20	WIPF1 (ENSABRG00000002070)	CHRNA1 (ENSABRG00000002084)	CHN1 (ENSABRG00000002131)	ATF2 (ENSABRG00000002181) #7	ATP5MC3 (ENSABRG00000002218) #8	LNPK (ENSABRG00000002302) #12	EVX2 (ENSABRG00000002357) #13	HOXD13 (ENSABRG00000002397) #14	HOXD12 (ENSABRG00000002420) #15	HOXD11 (ENSABRG00000002426) #16	HOXD10 (ENSABRG00000002435) #17	HOXD9 (ENSABRG00000002443) #18	HOXD8 (ENSABRG00000002447) #19	HOXD3 (ENSABRG00000002455) #21	HOXD4 (ENSABRG00000002472) #20	HOXD1 (ENSABRG00000002496) #22	MTX2 (ENSABRG00000002506) #23	ENSABRG00000002541	HNRNPA3 (ENSABRG00000002552) #25	NFE2L2 (ENSABRG00000002594) #26	AGPS (ENSABRG00000002617) #29	ENSABRG00000002659 #28	PDE11A (ENSABRG00000002784) #32	ENSABRG00000003166	RBM45 (ENSABRG00000003201) #33	OSBPL6 (ENSABRG00000003210)	PJVK (ENSABRG00000003243)	FKBP7 (ENSABRG00000003404)	PLEKHA3 (ENSABRG00000003409)	ENSABRG00000003426	ENSABRG00000003603
Phasianidae	ANCESTRAL SPECIES	8	ENSGT00910000144296.p	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653.c.a #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263523.E.q	ENSGT01100000263523.I.a.a.b	ENSGT01100000263523.J
Japanese quail	MODERN SPECIES	25	ENSCJPG00005017747	CHRNA1 (ENSCJPG00005017746)	CHN1 (ENSCJPG00005017745)	ATF2 (ENSCJPG00005017743) #7	ATP5MC3 (ENSCJPG00005017742) #8	LNPK (ENSCJPG00005017736) #12	EVX2 (ENSCJPG00005017735) #13	HOXD13 (ENSCJPG00005017734) #14	HOXD12 (ENSCJPG00005017733) #15	HOXD11 (ENSCJPG00005017732) #16	HOXD10 (ENSCJPG00005017731) #17	HOXD9 (ENSCJPG00005017730) #18	HOXD8 (ENSCJPG00005017729) #19	HOXD4 (ENSCJPG00005017727) #20	HOXD3 (ENSCJPG00005017726) #21	HOXD1 (ENSCJPG00005017724) #22	MTX2 (ENSCJPG00005017723) #23	HNRNPA3 (ENSCJPG00005017720) #25	NFE2L2 (ENSCJPG00005017719) #26	AGPS (ENSCJPG00005017718) #29	ENSCJPG00005017717 #28	PDE11A (ENSCJPG00005017716) #32	ENSCJPG00005017715	RBM45 (ENSCJPG00005017714) #33	OSBPL6 (ENSCJPG00005017349)	PJVK (ENSCJPG00005017347)	ENSCJPG00005017346	ENSCJPG00005017345	PLEKHA3 (ENSCJPG00005017344)	ENSCJPG00005017343	ENSCJPG00005017342
Australian saltwater crocodile	MODERN SPECIES	66	WIPF1 (ENSCPRG00005013893)	CHRNA1 (ENSCPRG00005013873)	CHN1 (ENSCPRG00005013868)	ATF2 (ENSCPRG00005013860) #7	ATP5MC3 (ENSCPRG00005013858) #8	LNPK (ENSCPRG00005013854) #12	EVX2 (ENSCPRG00005013841) #13	HOXD13 (ENSCPRG00005013840) #14	HOXD12 (ENSCPRG00005013839) #15	HOXD11 (ENSCPRG00005013836) #16	HOXD10 (ENSCPRG00005013834) #17	HOXD9 (ENSCPRG00005013832) #18	HOXD8 (ENSCPRG00005013830) #19	HOXD4 (ENSCPRG00005013826) #20	HOXD3 (ENSCPRG00005013823) #21	HOXD1 (ENSCPRG00005013818) #22	MTX2 (ENSCPRG00005013807) #23	ENSCPRG00005013800	HNRNPA3 (ENSCPRG00005013786) #25	NFE2L2 (ENSCPRG00005013780) #26	AGPS (ENSCPRG00005013779) #29	ENSCPRG00005013775 #28	ENSCPRG00005013750	ENSCPRG00005013733	RBM45 (ENSCPRG00005013721) #33	OSBPL6 (ENSCPRG00005013696)	FKBP7 (ENSCPRG00005013688)	ENSCPRG00005013675	ENSCPRG00005013671	PLEKHA3 (ENSCPRG00005013653)	ENSCPRG00005013628
Cryptodira	ANCESTRAL SPECIES	5	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000162151 #32	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964.d	ENSGT00940000159964.c	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Emydidae	ANCESTRAL SPECIES	4	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b.c	ENSGT00940000159964.d	ENSGT00940000159964.c	ENSGT00940000155850	ENSGT01100000263523.E
Three-toed box turtle	MODERN SPECIES	25	WIPF1 (ENSTMTG00000015938)	CHRNA1 (ENSTMTG00000016015)	CHN1 (ENSTMTG00000016233)	ATF2 (ENSTMTG00000016268) #7	ATP5MC3 (ENSTMTG00000016312) #8	LNPK (ENSTMTG00000016336) #12	EVX2 (ENSTMTG00000016382) #13	HOXD13 (ENSTMTG00000016398) #14	HOXD12 (ENSTMTG00000016406) #15	HOXD11 (ENSTMTG00000016420) #16	HOXD10 (ENSTMTG00000016440) #17	HOXD9 (ENSTMTG00000016450) #18	HOXD8 (ENSTMTG00000016482) #19	HOXD4 (ENSTMTG00000016507) #20	HOXD3 (ENSTMTG00000016516) #21	HOXD1 (ENSTMTG00000016527) #22	MTX2 (ENSTMTG00000016539) #23	HNRNPA3 (ENSTMTG00000016553) #25	NFE2L2 (ENSTMTG00000016586) #26	AGPS (ENSTMTG00000016599) #29	ENSTMTG00000016654 #28	ENSTMTG00000016667	ENSTMTG00000016712	RBM45 (ENSTMTG00000016722) #33	OSBPL6 (ENSTMTG00000016769)	PRKRA (ENSTMTG00000017277)	PJVK (ENSTMTG00000017294)	FKBP7 (ENSTMTG00000017327)	PLEKHA3 (ENSTMTG00000017351)	ENSTMTG00000017378	ENSTMTG00000017496
painted turtle	MODERN SPECIES	2363	CHRNA1 (ENSCPBG00000003798)	ENSCPBG00000003769	ATF2 (ENSCPBG00000003739) #7	ATP5MC3 (ENSCPBG00000003721) #8	ENSCPBG00000003699	LNPK (ENSCPBG00000003649) #12	EVX2 (ENSCPBG00000003612) #13	HOXD13 (ENSCPBG00000003603) #14	HOXD12 (ENSCPBG00000003590) #15	HOXD11 (ENSCPBG00000003578) #16	HOXD10 (ENSCPBG00000003567) #17	ENSCPBG00000003539	HOXD8 (ENSCPBG00000003524) #19	HOXD4 (ENSCPBG00000003507) #20	HOXD3 (ENSCPBG00000003500) #21	HOXD1 (ENSCPBG00000003489) #22	MTX2 (ENSCPBG00000003480) #23	HNRNPA3 (ENSCPBG00000003430) #25	NFE2L2 (ENSCPBG00000003397) #26	AGPS (ENSCPBG00000003348) #29	ENSCPBG00000003305 #28	ENSCPBG00000003283	ENSCPBG00000003254	RBM45 (ENSCPBG00000003246) #33	OSBPL6 (ENSCPBG00000003121)	ENSCPBG00000003060	ENSCPBG00000003042	ENSCPBG00000003031	PLEKHA3 (ENSCPBG00000003014)	ENSCPBG00000002842	ENSCPBG00000002702
Testudinidae	ANCESTRAL SPECIES	8	ENSGT00390000004153	ENSGT00910000144296	ENSGT00940000156851	ENSGT01030000234635.a.b.a.b.b.a.a.a	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000159938 #15	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000153147 #25	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00390000010116 #28	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964.d	ENSGT00940000159964.c	ENSGT00940000155850	ENSGT01100000263523.E
Abingdon island giant tortoise	MODERN SPECIES	1035	CHRNA1 (ENSCABG00000005846)	CHN1 (ENSCABG00000005836)	ENSCABG00000005833	ATF2 (ENSCABG00000005829) #7	ATP5MC3 (ENSCABG00000005827) #8	LNPK (ENSCABG00000005471) #12	EVX2 (ENSCABG00000005465) #13	HOXD13 (ENSCABG00000005464) #14	HOXD12 (ENSCABG00000005463) #15	HOXD11 (ENSCABG00000005462) #16	HOXD10 (ENSCABG00000005460) #17	ENSCABG00000005458	HOXD8 (ENSCABG00000005456) #19	HOXD4 (ENSCABG00000005454) #20	HOXD3 (ENSCABG00000005452) #21	HOXD1 (ENSCABG00000005451) #22	MTX2 (ENSCABG00000005448) #23
Goode s thornscrub tortoise	MODERN SPECIES	2	ENSGEVG00005010137	ENSGEVG00005010115	ENSGEVG00005010081	ATF2 (ENSGEVG00005010051) #7	ENSGEVG00005009994 #8	LNPK (ENSGEVG00005009864) #12	EVX2 (ENSGEVG00005009804) #13	HOXD13 (ENSGEVG00005009780) #14	HOXD12 (ENSGEVG00005009748) #15	HOXD11 (ENSGEVG00005009700) #16	HOXD10 (ENSGEVG00005009665) #17	ENSGEVG00005009551	HOXD8 (ENSGEVG00005009500) #19	HOXD4 (ENSGEVG00005009454) #20	HOXD3 (ENSGEVG00005009410) #21	HOXD1 (ENSGEVG00005009340) #22	MTX2 (ENSGEVG00005020106) #23	HNRNPA3 (ENSGEVG00005020097) #25	NFE2L2 (ENSGEVG00005020090) #26	AGPS (ENSGEVG00005019755) #29	ENSGEVG00005019518 #28	ENSGEVG00005019504	ENSGEVG00005019493	RBM45 (ENSGEVG00005019483) #33	OSBPL6 (ENSGEVG00005019328)	PRKRA (ENSGEVG00005019255)	PJVK (ENSGEVG00005019241)	ENSGEVG00005019232	ENSGEVG00005019223	PLEKHA3 (ENSGEVG00005019213)	ENSGEVG00005019169
Chinese turtle	MODERN SPECIES	780	DBF4 (ENSPSIG00000006340)	WIPF1 (ENSPSIG00000006271)	ENSPSIG00000001511	CHRNA1 (ENSPSIG00000003348)	CHN1 (ENSPSIG00000003287)	ATF2 (ENSPSIG00000003225) #7	ATP5MC3 (ENSPSIG00000003200) #8	LNPK (ENSPSIG00000003146) #12	EVX2 (ENSPSIG00000003143) #13	HOXD13 (ENSPSIG00000003141) #14	HOXD12 (ENSPSIG00000003112) #15	HOXD11 (ENSPSIG00000003098) #16	HOXD10 (ENSPSIG00000003088) #17	HOXD4 (ENSPSIG00000003079) #20	HOXD3 (ENSPSIG00000003067) #21	HOXD1 (ENSPSIG00000003058) #22	MTX2 (ENSPSIG00000003052) #23	ENSPSIG00000001503	HNRNPA3 (ENSPSIG00000003011) #25	ENSPSIG00000001493	NFE2L2 (ENSPSIG00000003007) #26	AGPS (ENSPSIG00000002901) #29	ENSPSIG00000001485 #28	ENSPSIG00000002897 #32	ENSPSIG00000002895	ENSPSIG00000002892	RBM45 (ENSPSIG00000002884) #33	ENSPSIG00000002871	ENSPSIG00000002862	ENSPSIG00000002859	PRKRA (ENSPSIG00000002848)
Anura	ANCESTRAL SPECIES	7	ENSGT00390000013474.a	ENSGT00390000004153	ENSGT00910000144296	ENSGT00940000156851	ENSGT00940000156582 #7	ENSGT00940000154298.a.a #8	ENSGT00390000001859 #12	ENSGT00940000161025 #13	ENSGT00940000161457 #14	ENSGT00940000161308 #16	ENSGT00940000158266 #17	ENSGT00940000161503 #18	ENSGT00940000161653 #19	ENSGT00940000157270 #20	ENSGT00940000160027 #21	ENSGT00940000161892 #22	ENSGT00950000182919.C #23	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #26	ENSGT00940000156112 #29	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.F	ENSGT01100000263523.I.a.a.b
Frog	MODERN SPECIES	9	ENSXETG00000041300	osbpl6 (ENSXETG00000015011)	atp5mc3 (ENSXETG00000024423) #8	rbm45 (ENSXETG00000015007) #33	chn1 (ENSXETG00000015003) #7	lnpk (ENSXETG00000007570) #12	evx2 (ENSXETG00000040812) #13	hoxd13 (ENSXETG00000007575) #14	hoxd9 (ENSXETG00000045288) #18	hoxd10 (ENSXETG00000032416) #16	ENSXETG00000027973	ENSXETG00000043675	hoxd8 (ENSXETG00000040128) #19	HOXD4 (ENSXETG00000001799) #20	hoxd3 (ENSXETG00000037804) #21	hoxd1 (ENSXETG00000001801) #22	mtx2 (ENSXETG00000001802) #23	ENSXETG00000047117	hnrnpa3 (ENSXETG00000001806)	nfe2l2 (ENSXETG00000001808) #26	ENSXETG00000045596	agps (ENSXETG00000008462) #29	pde11a (ENSXETG00000008465)	ENSXETG00000008473	cyct (ENSXETG00000008472)	chrna1.2 (ENSXETG00000044131)	wipf1 (ENSXETG00000008476)	ENSXETG00000046227	gpr155 (ENSXETG00000008486)	scrn3 (ENSXETG00000008487)	cir1 (ENSXETG00000036152)
Leishan spiny toad	MODERN SPECIES	10	ENSLLEG00000026724	CHN1 (ENSLLEG00000027124)	ENSLLEG00000027748	ATF2 (ENSLLEG00000027780) #7	ENSLLEG00000027903	ATP5MC3 (ENSLLEG00000027926) #8	LNPK (ENSLLEG00000027978) #12	EVX2 (ENSLLEG00000028026) #13	HOXD13 (ENSLLEG00000028045) #14	HOXD11 (ENSLLEG00000028065) #16	HOXD10 (ENSLLEG00000028079) #17	HOXD9 (ENSLLEG00000028108) #18	ENSLLEG00000028121	HOXD4 (ENSLLEG00000028161) #20	HOXD3 (ENSLLEG00000028179) #21	HOXD1 (ENSLLEG00000028203) #22	MTX2 (ENSLLEG00000028232) #23	ENSLLEG00000028297	ENSLLEG00000028308	ENSLLEG00000028320	ENSLLEG00000028331	ENSLLEG00000028342	ENSLLEG00000028371	NFE2L2 (ENSLLEG00000028454) #26	ENSLLEG00000028487	AGPS (ENSLLEG00000028535) #29	ENSLLEG00000028901	ENSLLEG00000029018	ENSLLEG00000029028	RBM45 (ENSLLEG00000029039) #33	OSBPL6 (ENSLLEG00000029061)
Coelacanth	MODERN SPECIES	845						LNPK (ENSLACG00000011160) #12	EVX2 (ENSLACG00000010437) #13	HOXD12 (ENSLACG00000009639) #15	HOXD11 (ENSLACG00000009551) #16	HOXD10 (ENSLACG00000009430) #17	ENSLACG00000009348	ENSLACG00000009170	ENSLACG00000009061	HOXD4 (ENSLACG00000008693) #20	HOXD3 (ENSLACG00000008444) #21	HOXD1 (ENSLACG00000008144) #22	ENSLACG00000006214	MTX2 (ENSLACG00000005615) #23