Hystricomorpha	ANCESTRAL SPECIES	50	ENSGT00390000007087	ENSGT00940000157760 #7	ENSGT00440000033504.A #8	ENSGT00940000160155 #9	ENSGT00550000074828.a.h #10	ENSGT00940000161780 #11	ENSGT00940000161196 #12	ENSGT00390000012831 #13	ENSGT00390000010778 #14	ENSGT00390000017361 #15	ENSGT00940000160990 #17	ENSGT00940000153899.a.b #18	ENSGT00940000159701 #19	ENSGT00940000160974.b #20	ENSGT00390000002624 #21	ENSGT00940000162463 #22	ENSGT00940000160931 #23	ENSGT00950000183205.a #24	ENSGT00950000182839.B.b #25	ENSGT00390000012150 #26	ENSGT00390000001545	ENSGT00940000155653.b #27	ENSGT00940000161492 #28	ENSGT00530000063576.A #29	ENSGT00940000158300 #30	ENSGT01090000259985.b.b.b.b #31	ENSGT00940000159515 #32	ENSGT01050000244857.A.a.b #33	ENSGT00950000182857.a.a.b.a.r.b.d.a #34	ENSGT00950000182857.a.a.b.a.r.b.d.b #35	ENSGT00950000182857.a.a.b.b #36
Hystricomorpha_a	ANCESTRAL SPECIES	57	ENSGT00390000007087	ENSGT00940000157760 #7	ENSGT00440000033504.A #8	ENSGT00940000160155 #9	ENSGT00550000074828.a.h #10	ENSGT00940000161780 #11	ENSGT00940000161196 #12	ENSGT00390000012831 #13	ENSGT00390000010778 #14	ENSGT00390000017361 #15	ENSGT00940000160990 #17	ENSGT00940000153899.a.b #18	ENSGT00940000159701 #19	ENSGT00940000160974.b #20	ENSGT00390000002624 #21	ENSGT00940000162463 #22	ENSGT00940000160931 #23	ENSGT00950000183205.a #24	ENSGT00950000182839.B.b #25	ENSGT00390000012150 #26	ENSGT00390000001545	ENSGT00940000155653.b #27	ENSGT00940000161492 #28	ENSGT00530000063576.A #29	ENSGT00940000158300 #30	ENSGT01090000259985.b.b.b.b #31	ENSGT00940000159515 #32	ENSGT01050000244857.A.a.b #33	ENSGT00950000182857.a.a.b.a.r.b.d.a #34	ENSGT00950000182857.a.a.b.a.r.b.d.b #35	ENSGT00950000182857.a.a.b.b #36
Hystricomorpha_b	ANCESTRAL SPECIES	69	ENSGT00390000007087	ENSGT00940000157760 #7	ENSGT00440000033504.A #8	ENSGT00940000160155 #9	ENSGT00550000074828.a.h #10	ENSGT00940000161780 #11	ENSGT00940000161196 #12	ENSGT00390000012831 #13	ENSGT00390000010778 #14	ENSGT00390000017361 #15	ENSGT00940000160990 #17	ENSGT00940000153899.a.b #18	ENSGT00940000159701 #19	ENSGT00940000160974.b #20	ENSGT00390000002624 #21	ENSGT00940000162463 #22	ENSGT00940000160931 #23	ENSGT00950000183205.a #24	ENSGT00950000182839.B.b #25	ENSGT00390000012150 #26	ENSGT00390000001545	ENSGT00940000155653.b #27	ENSGT00940000161492 #28	ENSGT00530000063576.A #29	ENSGT00940000158300 #30	ENSGT01090000259985.b.b.b.b #31	ENSGT00940000159515 #32	ENSGT01050000244857.A.a.b #33	ENSGT00950000182857.a.a.b.a.r.b.d.a #34	ENSGT00950000182857.a.a.b.a.r.b.d.b #35	ENSGT00950000182857.a.a.b.b #36
Degu	MODERN SPECIES	134	CD151 (ENSODEG00000015853) #7	CRACR2B (ENSODEG00000015592) #8	ENSODEG00000014759 #9	ENSODEG00000014743 #10	PIDD1 (ENSODEG00000015097) #11	ENSODEG00000014757 #12	CEND1 (ENSODEG00000020414) #13	GATD1 (ENSODEG00000014975) #14	ENSODEG00000014998 #15	ENSODEG00000020292 #16	EPS8L2 (ENSODEG00000015193) #17	TMEM80 (ENSODEG00000015509) #18	DEAF1 (ENSODEG00000014328) #19	DRD4 (ENSODEG00000015523) #20	SCT (ENSODEG00000014530) #21	CDHR5 (ENSODEG00000014852) #22	IRF7 (ENSODEG00000014885) #23	PHRF1 (ENSODEG00000014313) #24	ENSODEG00000015084 #25	ENSODEG00000014331 #26	HRAS (ENSODEG00000015703) #27	RNH1 (ENSODEG00000014320) #28	PTDSS2 (ENSODEG00000014250) #29	ANO9 (ENSODEG00000014087) #30	SIGIRR (ENSODEG00000014794) #31	PKP3 (ENSODEG00000014948) #32	B4GALNT4 (ENSODEG00000015497) #33	ENSODEG00000014892 #34	ENSODEG00000014441 #35	IFITM5 (ENSODEG00000014917) #36	PGGHG (ENSODEG00000015256) #37
Long-tailed chinchilla	MODERN SPECIES	183	POLR2L (ENSCLAG00000002071)	CD151 (ENSCLAG00000002099) #7	CRACR2B (ENSCLAG00000002228) #8	PNPLA2 (ENSCLAG00000002353) #9	ENSCLAG00000002508 #10	PIDD1 (ENSCLAG00000002669) #11	SLC25A22 (ENSCLAG00000001611) #12	CEND1 (ENSCLAG00000001657) #13	GATD1 (ENSCLAG00000001667) #14	TALDO1 (ENSCLAG00000001681) #15	EPS8L2 (ENSCLAG00000001776) #17	TMEM80 (ENSCLAG00000001812) #18	DEAF1 (ENSCLAG00000001826) #19	DRD4 (ENSCLAG00000001843) #20	SCT (ENSCLAG00000002156) #21	CDHR5 (ENSCLAG00000002189) #22	IRF7 (ENSCLAG00000002239) #23	PHRF1 (ENSCLAG00000002283) #24	RASSF7 (ENSCLAG00000002325) #25	LMNTD2 (ENSCLAG00000002350) #26	LRRC56 (ENSCLAG00000002414)	HRAS (ENSCLAG00000002823) #27	RNH1 (ENSCLAG00000003160) #28	PTDSS2 (ENSCLAG00000003243) #29	ANO9 (ENSCLAG00000003641) #30	SIGIRR (ENSCLAG00000004078) #31	PKP3 (ENSCLAG00000001901) #32	B4GALNT4 (ENSCLAG00000001998) #33	ENSCLAG00000002174 #35	ENSCLAG00000002205 #34	IFITM5 (ENSCLAG00000002379) #36
Guinea pig	MODERN SPECIES	208	POLR2L (ENSCPOG00000033252)	CD151 (ENSCPOG00000005866) #7	CRACR2B (ENSCPOG00000005863) #8	PNPLA2 (ENSCPOG00000005859) #9	RPLP2 (ENSCPOG00000005858) #10	PIDD1 (ENSCPOG00000002839) #11	SLC25A22 (ENSCPOG00000001525) #12	CEND1 (ENSCPOG00000038749) #13	GATD1 (ENSCPOG00000019935) #14	TALDO1 (ENSCPOG00000001899) #15	EPS8L2 (ENSCPOG00000003802) #17	ENSCPOG00000022713 #18	DEAF1 (ENSCPOG00000006073) #19	ENSCPOG00000030714 #20	ENSCPOG00000026934 #21	CDHR5 (ENSCPOG00000022398) #22	PHRF1 (ENSCPOG00000002118) #24	IRF7 (ENSCPOG00000034452) #23	RASSF7 (ENSCPOG00000021535) #25	ENSCPOG00000002107 #26	LRRC56 (ENSCPOG00000002104)	HRAS (ENSCPOG00000000101) #27	RNH1 (ENSCPOG00000008885) #28	PTDSS2 (ENSCPOG00000008876) #29	ANO9 (ENSCPOG00000003690) #30	SIGIRR (ENSCPOG00000025549) #31	PKP3 (ENSCPOG00000012316) #32	B4GALNT4 (ENSCPOG00000025280) #33	ENSCPOG00000031469 #35	ENSCPOG00000036343 #34	IFITM5 (ENSCPOG00000038604) #36
Naked mole-rat female	MODERN SPECIES	30	TSPAN4 (ENSHGLG00000006012)	POLR2L (ENSHGLG00000046005)	CD151 (ENSHGLG00000007423) #7	CRACR2B (ENSHGLG00000008403) #8	PNPLA2 (ENSHGLG00000008747) #9	RPLP2 (ENSHGLG00000004323) #10	PIDD1 (ENSHGLG00000004382) #11	SLC25A22 (ENSHGLG00000004879) #12	CEND1 (ENSHGLG00000039518) #13	GATD1 (ENSHGLG00000005954) #14	TALDO1 (ENSHGLG00000006299) #15	TMEM80 (ENSHGLG00000005056) #18	DEAF1 (ENSHGLG00000005108) #19	ENSHGLG00000043862 #20	SCT (ENSHGLG00000005290) #21	CDHR5 (ENSHGLG00000006702) #22	IRF7 (ENSHGLG00000033756) #23	PHRF1 (ENSHGLG00000007728) #24	RASSF7 (ENSHGLG00000009399) #25	ENSHGLG00000004269 #26	LRRC56 (ENSHGLG00000004394)	HRAS (ENSHGLG00000004508) #27	RNH1 (ENSHGLG00000004937) #28	PTDSS2 (ENSHGLG00000005316) #29	ANO9 (ENSHGLG00000006001) #30	SIGIRR (ENSHGLG00000007089) #31	PKP3 (ENSHGLG00000007744) #32	ENSHGLG00000043229 #35	ENSHGLG00000013029 #35	ENSHGLG00000045819 #35	IFITM5 (ENSHGLG00000031967) #36