Hystricomorpha_a	ANCESTRAL SPECIES	37	ENSGT00530000064274 #7	ENSGT01100000264006 #8	ENSGT00730000111539 #9	ENSGT00940000159077 #10	ENSGT00940000162550 #11	ENSGT00940000156253 #12	ENSGT00940000158923 #13	ENSGT00940000164659 #14	ENSGT00550000074783 #15	ENSGT00940000156013.c #16	ENSGT00390000007224.b #17	ENSGT00390000016055 #18	ENSGT00390000013073 #19	ENSGT00940000159090 #20	ENSGT00940000156815 #21	ENSGT00500000044986 #22	ENSGT00530000063252.a.b #23	ENSGT00940000155799 #24	ENSGT00390000008902 #25	ENSGT00940000160634 #26	ENSGT00940000156271 #27	ENSGT00940000157860 #28	ENSGT00940000159353 #29	ENSGT00390000001844.a.a #30	ENSGT00390000002429 #31	ENSGT00950000182952.A.b #32	ENSGT00940000154829.c #33	ENSGT00940000157962 #34	ENSGT00390000007999 #35	ENSGT00940000157806 #36	ENSGT00890000139503 #37
Guinea pig	MODERN SPECIES	52	ENSCPOG00000035094	ENSCPOG00000030837	KRTAP27-1 (ENSCPOG00000038819) #9	CLDN8 (ENSCPOG00000033499) #10	CLDN17 (ENSCPOG00000002365) #11	GRIK1 (ENSCPOG00000000196) #12	BACH1 (ENSCPOG00000008737) #13	MAP3K7CL (ENSCPOG00000035962)	CCT8 (ENSCPOG00000009404) #15	USP16 (ENSCPOG00000009390) #16	RWDD2B (ENSCPOG00000033672) #17	LTN1 (ENSCPOG00000006815) #18	N6AMT1 (ENSCPOG00000030645) #19	ADAMTS5 (ENSCPOG00000009911) #20	ADAMTS1 (ENSCPOG00000035904) #21	CYYR1 (ENSCPOG00000000968) #22	APP (ENSCPOG00000001427) #23	GABPA (ENSCPOG00000035074) #24	ATP5PF (ENSCPOG00000004703) #25	JAM2 (ENSCPOG00000004699) #26	MRPL39 (ENSCPOG00000025162) #27	ENSCPOG00000036378	ENSCPOG00000027461	MZF1 (ENSCPOG00000009921)	UBE2M (ENSCPOG00000026733)	CHMP2A (ENSCPOG00000023920)	ENSCPOG00000005745	ZBTB45 (ENSCPOG00000021221)	SLC27A5 (ENSCPOG00000012620)	ZNF446 (ENSCPOG00000032178)	ENSCPOG00000039862
Hystricomorpha_b	ANCESTRAL SPECIES	34	ENSGT01100000264006 #8	ENSGT01040000243806	ENSGT00900000142979	ENSGT00940000159077 #10	ENSGT00940000162550 #11	ENSGT00940000156253 #12	ENSGT00940000158923 #13	ENSGT00940000164659 #14	ENSGT00550000074783 #15	ENSGT00940000156013.c #16	ENSGT00390000007224.b #17	ENSGT00390000016055 #18	ENSGT00390000013073 #19	ENSGT00940000159090 #20	ENSGT00940000156815 #21	ENSGT00500000044986 #22	ENSGT00530000063252.a.b #23	ENSGT00940000155799 #24	ENSGT00390000008902 #25	ENSGT00940000160634 #26	ENSGT00940000156271 #27	ENSGT00940000157860 #28	ENSGT00940000159353 #29	ENSGT00390000001844.a.a #30	ENSGT00390000002429 #31	ENSGT00950000182952.A.b #32	ENSGT00940000154829.c #33	ENSGT00940000157962 #34	ENSGT00390000007999 #35	ENSGT00940000157806 #36	ENSGT00890000139503 #37
Long-tailed chinchilla	MODERN SPECIES	114	ENSCLAG00000017752	ENSCLAG00000017881	ENSCLAG00000009990	ENSCLAG00000008697	CLDN8 (ENSCLAG00000011278) #10	CLDN17 (ENSCLAG00000017804) #11	GRIK1 (ENSCLAG00000006476) #12	BACH1 (ENSCLAG00000005959) #13	ENSCLAG00000005755 #14	CCT8 (ENSCLAG00000004410) #15	RWDD2B (ENSCLAG00000011443) #17	LTN1 (ENSCLAG00000010631) #18	N6AMT1 (ENSCLAG00000009758) #19	ADAMTS5 (ENSCLAG00000012653) #20	ADAMTS1 (ENSCLAG00000012130) #21	CYYR1 (ENSCLAG00000013530) #22	APP (ENSCLAG00000008908) #23	GABPA (ENSCLAG00000008257) #24	ATP5PF (ENSCLAG00000007684) #25	JAM2 (ENSCLAG00000012967) #26	MRPL39 (ENSCLAG00000015525) #27	ENSCLAG00000014842	NCAM2 (ENSCLAG00000009655) #28	ENSCLAG00000010786	TMPRSS15 (ENSCLAG00000010105) #29	CHODL (ENSCLAG00000008058) #30	C21orf91 (ENSCLAG00000007697) #31	BTG3 (ENSCLAG00000007443) #32	CXADR (ENSCLAG00000007257) #33	USP25 (ENSCLAG00000005128) #34	NRIP1 (ENSCLAG00000004956) #35
Degu	MODERN SPECIES	61									ENSODEG00000012081	ENSODEG00000012856	ENSODEG00000019971	ENSODEG00000019939	ADAMTS5 (ENSODEG00000016244) #20	ENSODEG00000020000	ADAMTS1 (ENSODEG00000012583) #21	CYYR1 (ENSODEG00000013725) #22	ENSODEG00000013104	APP (ENSODEG00000013466) #23	ENSODEG00000012653	GABPA (ENSODEG00000014082) #24	ENSODEG00000012348 #25	JAM2 (ENSODEG00000012747) #26	MRPL39 (ENSODEG00000013710) #27	FSHR (ENSODEG00000014615)	ENSODEG00000012799	LHCGR (ENSODEG00000011660)	GTF2A1L (ENSODEG00000012958)	STON1 (ENSODEG00000012778)	PPP1R21 (ENSODEG00000013346)	FOXN2 (ENSODEG00000012405)	FBXO11 (ENSODEG00000013014)