Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00860000134598	ENSGT00390000001157.A.a	ENSGT00940000159077 #10	ENSGT00940000162550 #11	ENSGT00940000156253 #12	ENSGT00940000158923 #13	ENSGT00940000164659 #14	ENSGT00770000120675	ENSGT00550000074783 #15	ENSGT00940000156013 #16	ENSGT00390000007224.b #17	ENSGT00390000016055 #18	ENSGT00390000013073 #19	ENSGT00940000159090 #20	ENSGT00940000156815 #21	ENSGT00500000044986 #22	ENSGT00530000063252.a.b #23	ENSGT00940000155799 #24	ENSGT00390000008902 #25	ENSGT00940000160634 #26	ENSGT00940000156271 #27	ENSGT00940000157860 #28	ENSGT00940000159353 #29	ENSGT00390000001844.a.a #30	ENSGT00390000002429 #31	ENSGT00950000182952.A.b #32	ENSGT00940000154829.c #33	ENSGT00940000157962 #34	ENSGT00390000007999 #35	ENSGT00940000157806 #36	ENSGT00890000139503 #37
Hystricomorpha	ANCESTRAL SPECIES	18	ENSGT00530000064274 #7	ENSGT01100000264006 #8	ENSGT00730000111539 #9	ENSGT00940000159077 #10	ENSGT00940000162550 #11	ENSGT00940000156253 #12	ENSGT00940000158923 #13	ENSGT00940000164659 #14	ENSGT00550000074783 #15	ENSGT00940000156013.c #16	ENSGT00390000007224.b #17	ENSGT00390000016055 #18	ENSGT00390000013073 #19	ENSGT00940000159090 #20	ENSGT00940000156815 #21	ENSGT00500000044986 #22	ENSGT00530000063252.a.b #23	ENSGT00940000155799 #24	ENSGT00390000008902 #25	ENSGT00940000160634 #26	ENSGT00940000156271 #27	ENSGT00940000157860 #28	ENSGT00940000159353 #29	ENSGT00390000001844.a.a #30	ENSGT00390000002429 #31	ENSGT00950000182952.A.b #32	ENSGT00940000154829.c #33	ENSGT00940000157962 #34	ENSGT00390000007999 #35	ENSGT00940000157806 #36	ENSGT00890000139503 #37
Hystricomorpha_a	ANCESTRAL SPECIES	37	ENSGT00530000064274 #7	ENSGT01100000264006 #8	ENSGT00730000111539 #9	ENSGT00940000159077 #10	ENSGT00940000162550 #11	ENSGT00940000156253 #12	ENSGT00940000158923 #13	ENSGT00940000164659 #14	ENSGT00550000074783 #15	ENSGT00940000156013.c #16	ENSGT00390000007224.b #17	ENSGT00390000016055 #18	ENSGT00390000013073 #19	ENSGT00940000159090 #20	ENSGT00940000156815 #21	ENSGT00500000044986 #22	ENSGT00530000063252.a.b #23	ENSGT00940000155799 #24	ENSGT00390000008902 #25	ENSGT00940000160634 #26	ENSGT00940000156271 #27	ENSGT00940000157860 #28	ENSGT00940000159353 #29	ENSGT00390000001844.a.a #30	ENSGT00390000002429 #31	ENSGT00950000182952.A.b #32	ENSGT00940000154829.c #33	ENSGT00940000157962 #34	ENSGT00390000007999 #35	ENSGT00940000157806 #36	ENSGT00890000139503 #37
Guinea pig	MODERN SPECIES	52	ENSCPOG00000035094	ENSCPOG00000030837	KRTAP27-1 (ENSCPOG00000038819) #9	CLDN8 (ENSCPOG00000033499) #10	CLDN17 (ENSCPOG00000002365) #11	GRIK1 (ENSCPOG00000000196) #12	BACH1 (ENSCPOG00000008737) #13	MAP3K7CL (ENSCPOG00000035962)	CCT8 (ENSCPOG00000009404) #15	USP16 (ENSCPOG00000009390) #16	RWDD2B (ENSCPOG00000033672) #17	LTN1 (ENSCPOG00000006815) #18	N6AMT1 (ENSCPOG00000030645) #19	ADAMTS5 (ENSCPOG00000009911) #20	ADAMTS1 (ENSCPOG00000035904) #21	CYYR1 (ENSCPOG00000000968) #22	APP (ENSCPOG00000001427) #23	GABPA (ENSCPOG00000035074) #24	ATP5PF (ENSCPOG00000004703) #25	JAM2 (ENSCPOG00000004699) #26	MRPL39 (ENSCPOG00000025162) #27	ENSCPOG00000036378	ENSCPOG00000027461	MZF1 (ENSCPOG00000009921)	UBE2M (ENSCPOG00000026733)	CHMP2A (ENSCPOG00000023920)	ENSCPOG00000005745	ZBTB45 (ENSCPOG00000021221)	SLC27A5 (ENSCPOG00000012620)	ZNF446 (ENSCPOG00000032178)	ENSCPOG00000039862
Hystricomorpha_b	ANCESTRAL SPECIES	34	ENSGT01100000264006 #8	ENSGT01040000243806	ENSGT00900000142979	ENSGT00940000159077 #10	ENSGT00940000162550 #11	ENSGT00940000156253 #12	ENSGT00940000158923 #13	ENSGT00940000164659 #14	ENSGT00550000074783 #15	ENSGT00940000156013.c #16	ENSGT00390000007224.b #17	ENSGT00390000016055 #18	ENSGT00390000013073 #19	ENSGT00940000159090 #20	ENSGT00940000156815 #21	ENSGT00500000044986 #22	ENSGT00530000063252.a.b #23	ENSGT00940000155799 #24	ENSGT00390000008902 #25	ENSGT00940000160634 #26	ENSGT00940000156271 #27	ENSGT00940000157860 #28	ENSGT00940000159353 #29	ENSGT00390000001844.a.a #30	ENSGT00390000002429 #31	ENSGT00950000182952.A.b #32	ENSGT00940000154829.c #33	ENSGT00940000157962 #34	ENSGT00390000007999 #35	ENSGT00940000157806 #36	ENSGT00890000139503 #37
Long-tailed chinchilla	MODERN SPECIES	114	ENSCLAG00000017752	ENSCLAG00000017881	ENSCLAG00000009990	ENSCLAG00000008697	CLDN8 (ENSCLAG00000011278) #10	CLDN17 (ENSCLAG00000017804) #11	GRIK1 (ENSCLAG00000006476) #12	BACH1 (ENSCLAG00000005959) #13	ENSCLAG00000005755 #14	CCT8 (ENSCLAG00000004410) #15	RWDD2B (ENSCLAG00000011443) #17	LTN1 (ENSCLAG00000010631) #18	N6AMT1 (ENSCLAG00000009758) #19	ADAMTS5 (ENSCLAG00000012653) #20	ADAMTS1 (ENSCLAG00000012130) #21	CYYR1 (ENSCLAG00000013530) #22	APP (ENSCLAG00000008908) #23	GABPA (ENSCLAG00000008257) #24	ATP5PF (ENSCLAG00000007684) #25	JAM2 (ENSCLAG00000012967) #26	MRPL39 (ENSCLAG00000015525) #27	ENSCLAG00000014842	NCAM2 (ENSCLAG00000009655) #28	ENSCLAG00000010786	TMPRSS15 (ENSCLAG00000010105) #29	CHODL (ENSCLAG00000008058) #30	C21orf91 (ENSCLAG00000007697) #31	BTG3 (ENSCLAG00000007443) #32	CXADR (ENSCLAG00000007257) #33	USP25 (ENSCLAG00000005128) #34	NRIP1 (ENSCLAG00000004956) #35
Degu	MODERN SPECIES	61									ENSODEG00000012081	ENSODEG00000012856	ENSODEG00000019971	ENSODEG00000019939	ADAMTS5 (ENSODEG00000016244) #20	ENSODEG00000020000	ADAMTS1 (ENSODEG00000012583) #21	CYYR1 (ENSODEG00000013725) #22	ENSODEG00000013104	APP (ENSODEG00000013466) #23	ENSODEG00000012653	GABPA (ENSODEG00000014082) #24	ENSODEG00000012348 #25	JAM2 (ENSODEG00000012747) #26	MRPL39 (ENSODEG00000013710) #27	FSHR (ENSODEG00000014615)	ENSODEG00000012799	LHCGR (ENSODEG00000011660)	GTF2A1L (ENSODEG00000012958)	STON1 (ENSODEG00000012778)	PPP1R21 (ENSODEG00000013346)	FOXN2 (ENSODEG00000012405)	FBXO11 (ENSODEG00000013014)
Naked mole-rat female	MODERN SPECIES	11	GRIK1 (ENSHGLG00000008751) #12	BACH1 (ENSHGLG00000009238) #13	ENSHGLG00000044029	ENSHGLG00000015419 #14	ENSHGLG00000005844	CCT8 (ENSHGLG00000010065) #15	USP16 (ENSHGLG00000007405) #16	ENSHGLG00000039973 #17	LTN1 (ENSHGLG00000005092) #18	ENSHGLG00000036479 #19	ENSHGLG00000017436	ENSHGLG00000037563	ENSHGLG00000015489 #20	ENSHGLG00000048019	ADAMTS1 (ENSHGLG00000012725) #21	CYYR1 (ENSHGLG00000044595) #22	APP (ENSHGLG00000010888) #23	GABPA (ENSHGLG00000040618) #24	ATP5PF (ENSHGLG00000035504) #25	JAM2 (ENSHGLG00000009331) #26	MRPL39 (ENSHGLG00000009251) #27	ENSHGLG00000041204	ENSHGLG00000033483	NCAM2 (ENSHGLG00000013262) #28	ENSHGLG00000013468	ENSHGLG00000013119	ENSHGLG00000016237 #29	ENSHGLG00000008201 #30	ENSHGLG00000006907	ENSHGLG00000044014	ENSHGLG00000049511
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00730000111511	ENSGT00860000134598	ENSGT00390000001157.A.a	ENSGT00940000159077 #10	ENSGT00940000162550 #11	ENSGT00940000156253 #12	ENSGT00940000158923 #13	ENSGT00770000120675	ENSGT00550000074783 #15	ENSGT00940000156013 #16	ENSGT00390000007224.b #17	ENSGT00390000016055.u #18	ENSGT00390000013073 #19	ENSGT00940000159090 #20	ENSGT00940000156815 #21	ENSGT00500000044986 #22	ENSGT00530000063252.a.b #23	ENSGT00940000155799 #24	ENSGT00390000008902 #25	ENSGT00940000160634 #26	ENSGT00940000156271 #27	ENSGT00940000157860 #28	ENSGT00940000159353 #29	ENSGT00390000001844.a.a #30	ENSGT00390000002429 #31	ENSGT00950000182952.A.b #32	ENSGT00940000154829.c #33	ENSGT00940000157962 #34	ENSGT00390000007999 #35	ENSGT00940000157806 #36	ENSGT00890000139503 #37
Marmotini	ANCESTRAL SPECIES	13	ENSGT00730000111511	ENSGT00860000134598	ENSGT00390000001157.A.a	ENSGT00940000159077 #10	ENSGT00940000162550 #11	ENSGT00940000156253 #12	ENSGT00940000158923 #13	ENSGT00770000120675	ENSGT00550000074783 #15	ENSGT00940000156013 #16	ENSGT00390000007224.b #17	ENSGT00390000016055.u #18	ENSGT00390000013073 #19	ENSGT00940000159090 #20	ENSGT00940000156815 #21	ENSGT00500000044986 #22	ENSGT00530000063252.a.b #23	ENSGT00940000155799 #24	ENSGT00390000008902 #25	ENSGT00940000160634 #26	ENSGT00940000156271 #27	ENSGT00940000157860 #28	ENSGT00940000159353 #29	ENSGT00390000001844.a.a #30	ENSGT00390000002429 #31	ENSGT00950000182952.A.b #32	ENSGT00940000154829.c #33	ENSGT00940000157962 #34	ENSGT00390000007999 #35	ENSGT00940000157806 #36	ENSGT00890000139503 #37
Marmotini_b	ANCESTRAL SPECIES	30	ENSGT00730000111511	ENSGT00860000134598	ENSGT00390000001157.A.a	ENSGT00940000159077 #10	ENSGT00940000162550 #11	ENSGT00940000156253 #12	ENSGT00940000158923 #13	ENSGT00770000120675	ENSGT00550000074783 #15	ENSGT00940000156013 #16	ENSGT00390000007224.b #17	ENSGT00390000016055.u #18	ENSGT00390000013073 #19	ENSGT00940000159090 #20	ENSGT00940000156815 #21	ENSGT00500000044986 #22	ENSGT00530000063252.a.b #23	ENSGT00940000155799 #24	ENSGT00390000008902 #25	ENSGT00940000160634 #26	ENSGT00940000156271 #27	ENSGT00940000157860 #28	ENSGT00940000159353 #29	ENSGT00390000001844.a.a #30	ENSGT00390000002429 #31	ENSGT00950000182952.A.b #32	ENSGT00940000154829.c #33	ENSGT00940000157962 #34	ENSGT00390000007999 #35	ENSGT00940000157806 #36	ENSGT00890000139503 #37
Squirrel	MODERN SPECIES	240														ADAMTS5 (ENSSTOG00000008876) #20	ADAMTS1 (ENSSTOG00000025243) #21	CYYR1 (ENSSTOG00000034039) #22	ENSSTOG00000030931	APP (ENSSTOG00000008660) #23	GABPA (ENSSTOG00000008645) #24	ENSSTOG00000008640 #25	JAM2 (ENSSTOG00000029221) #26	MRPL39 (ENSSTOG00000003794) #27
Arctic ground squirrel	MODERN SPECIES	167	KRTAP26-1 (ENSUPAG00010002158)	ENSUPAG00010002162	KRTAP24-1 (ENSUPAG00010002165)	CLDN8 (ENSUPAG00010002174) #10	CLDN17 (ENSUPAG00010002179) #11	GRIK1 (ENSUPAG00010002194) #12	BACH1 (ENSUPAG00010003158) #13	MAP3K7CL (ENSUPAG00010003166)	CCT8 (ENSUPAG00010003183) #15	USP16 (ENSUPAG00010003248) #16	RWDD2B (ENSUPAG00010003285) #17	LTN1 (ENSUPAG00010003291) #18	N6AMT1 (ENSUPAG00010003353) #19	ADAMTS5 (ENSUPAG00010003407) #20	ADAMTS1 (ENSUPAG00010003416) #21	CYYR1 (ENSUPAG00010003423) #22	ENSUPAG00010003429	APP (ENSUPAG00010003438) #23
Alpin marmot	MODERN SPECIES	4	KRTAP24-1 (ENSMMMG00000018278)	CLDN8 (ENSMMMG00000018275) #10	CLDN17 (ENSMMMG00000018270) #11	GRIK1 (ENSMMMG00000017705) #12	BACH1 (ENSMMMG00000017674) #13	ENSMMMG00000017666 #14	CCT8 (ENSMMMG00000017642) #15	USP16 (ENSMMMG00000017560) #16	RWDD2B (ENSMMMG00000017548) #17	LTN1 (ENSMMMG00000017523) #18	N6AMT1 (ENSMMMG00000017498) #19	ENSMMMG00000017484	ADAMTS5 (ENSMMMG00000017454) #20	ENSMMMG00000017450	ADAMTS1 (ENSMMMG00000017435) #21	CYYR1 (ENSMMMG00000017410) #22	APP (ENSMMMG00000017280) #23	GABPA (ENSMMMG00000017265) #24	ATP5PF (ENSMMMG00000017260) #25	ENSMMMG00000017255	JAM2 (ENSMMMG00000017242) #26	ENSMMMG00000017241	MRPL39 (ENSMMMG00000017228) #27	NCAM2 (ENSMMMG00000017178) #28	TMPRSS15 (ENSMMMG00000017127) #29	CHODL (ENSMMMG00000017114) #30	ENSMMMG00000017090	C21orf91 (ENSMMMG00000017080) #31	BTG3 (ENSMMMG00000017072) #32	CXADR (ENSMMMG00000017064) #33	ENSMMMG00000017058
Eurasian red squirrel	MODERN SPECIES	1	CLDN8 (ENSSVLG00005010045) #10	CLDN17 (ENSSVLG00005010066) #11	GRIK1 (ENSSVLG00005010222) #12	ENSSVLG00005011300	BACH1 (ENSSVLG00005011643) #13	MAP3K7CL (ENSSVLG00005011677)	CCT8 (ENSSVLG00005011755) #15	USP16 (ENSSVLG00005011969) #16	ENSSVLG00005012046 #17	LTN1 (ENSSVLG00005012139) #18	N6AMT1 (ENSSVLG00005012790) #19	ENSSVLG00005012959	ENSSVLG00005012993	ADAMTS5 (ENSSVLG00005013090) #20	ADAMTS1 (ENSSVLG00005013188) #21	CYYR1 (ENSSVLG00005013264) #22	APP (ENSSVLG00005014030) #23	GABPA (ENSSVLG00005014782) #24	ATP5PF (ENSSVLG00005014832) #25	JAM2 (ENSSVLG00005014952) #26	MRPL39 (ENSSVLG00005015019) #27	ENSSVLG00005015070	ENSSVLG00005015102	NCAM2 (ENSSVLG00005015135) #28	TMPRSS15 (ENSSVLG00005015465) #29	CHODL (ENSSVLG00005015694) #30	C21orf91 (ENSSVLG00005015857) #31	BTG3 (ENSSVLG00005015973) #32	CXADR (ENSSVLG00005016027) #33	USP25 (ENSSVLG00005016332) #34	NRIP1 (ENSSVLG00005016484) #35