Clupeocephala	ANCESTRAL SPECIES	27	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00390000010118.c.b ##28	ENSGT00940000165143.a.b #23	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT01010000223409	ENSGT00510000051675	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b
Otomorpha	ANCESTRAL SPECIES	8	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00940000165143.a.b #23	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT01010000223409	ENSGT00510000051675	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b	ENSGT00940000155333.B
Otophysi	ANCESTRAL SPECIES	1	ENSGT01010000222294.c.b.b.a.a.b.a.b ##7	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00940000165143.a.b #23	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT01010000223409	ENSGT00510000051675	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00410000029015	ENSGT00940000155427.a #35
Cyprinoidei	ANCESTRAL SPECIES	25	ENSGT01010000222294.c.b.b.a.a.b.a.b ##7	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567.r ##13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00940000165143.a.b #23	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.e.a	ENSGT00390000010118.c.a.a #28	ENSGT00510000051675.e.b.a	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149.e #33	ENSGT00940000166523 #34	ENSGT00410000029015	ENSGT00940000155427.a #35
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	84	ENSGT01100000263583.c	ENSGT00940000159697.i.a	ENSGT01010000222294.c.b.b.a.a.b.a.b.a ##7	ENSGT00390000002634.a.e #8	ENSGT00940000167370.d #9	ENSGT00950000183180.a.b.g.b ##10	ENSGT00940000158438.n.a #11	ENSGT00940000154566.a #12	ENSGT00940000160567.q #13	ENSGT00940000159412.a #14	ENSGT00760000119652.h.b #15	ENSGT00730000111185.eb.a #17	ENSGT00940000159172.c #18	ENSGT00940000160276.e #19	ENSGT00950000182940.b.a.b.a.a.b #20	ENSGT00940000165753.e #22	ENSGT00940000165143.a.b.d ##23	ENSGT00940000165143.a.a.e.a.b ##23	ENSGT00390000008158.b.b.a.b.c.a #24	ENSGT00390000008158.b.b.a.b.d #25	ENSGT00390000008158.b.a.e #26	ENSGT00390000008158.b.b.a.a.a #27	ENSGT00390000010118.c.a.a.a.a #28	ENSGT00940000163727.r #29	ENSGT00510000051675.e.b.b	ENSGT00940000155620.r.c #30	ENSGT00390000006100.p #31	ENSGT00940000158230.b.a.a.b ##32	ENSGT00940000158230.b.a.b #32	ENSGT00940000165149.e.b #33	ENSGT00940000166523.e #34
Cyprininae_a	ANCESTRAL SPECIES	78	ENSGT01100000263583.d	ENSGT01070000253873	ENSGT00940000159697.i.b	ENSGT01010000222294.c.b.b.a.a.b.a.b.b ##7	ENSGT00940000167370.d #9	ENSGT00950000183180.a.b.g.b ##10	ENSGT00940000158438.n.a #11	ENSGT00940000154566.a #12	ENSGT00940000160567.q #13	ENSGT00940000159412.a #14	ENSGT00760000119652.h.b #15	ENSGT00730000111185.eb.a #17	ENSGT00940000159172.c #18	ENSGT00940000160276.e #19	ENSGT00950000182940.b.a.b.a.a.b #20	ENSGT00940000165753.e #22	ENSGT00940000165143.a.b.d ##23	ENSGT00940000165143.a.a.e.a.b ##23	ENSGT00390000008158.b.b.a.b.c.a #24	ENSGT00390000008158.b.b.a.b.d #25	ENSGT00390000008158.b.a.e #26	ENSGT00390000008158.b.b.a.a.a #27	ENSGT00390000010118.c.a.a.a.a #28	ENSGT00940000163727.r #29	ENSGT00510000051675.e.b.b	ENSGT00940000155620.r.c #30	ENSGT00390000006100.p #31	ENSGT00940000158230.b.a.a.b ##32	ENSGT00940000158230.b.a.b #32	ENSGT00940000165149.e.b #33	ENSGT00940000166523.e #34
Golden-line barbel	MODERN SPECIES	149	ENSSGRG00000002289 #7	dnase2 (ENSSGRG00000002288) #8	rgl2 (ENSSGRG00000002287) #9	PHF1 (ENSSGRG00000002286) #10	SYNGAP1 (ENSSGRG00000002283) #11	smg5 (ENSSGRG00000001733) #12	PAQR6 (ENSSGRG00000001712) #13	ntrk1 (ENSSGRG00000001708) #14	ENSSGRG00000001706 #15	ENSSGRG00000001702 #16	rbm8a (ENSSGRG00000001665) #17	otud7b (ENSSGRG00000001364) #18	mtmr11 (ENSSGRG00000001328) #19	SV2A (ENSSGRG00000001311) #20	ENSSGRG00000001302 #21	nr2f5 (ENSSGRG00000001240) #22	rpz2 (ENSSGRG00000001223) #23	ENSSGRG00000001214 #24	ENSSGRG00000001207 #25	rpz5 (ENSSGRG00000001195) #26	rpz4 (ENSSGRG00000001186) #27	ENSSGRG00000001174 #28	ENSSGRG00000001156 #29	ubqln4 (ENSSGRG00000053311) #30	lamtor2 (ENSSGRG00000053310) #31	rab25b (ENSSGRG00000053309) #32	rab11al (ENSSGRG00000053308) #33	ENSSGRG00000053307 #34	THSD7A (ENSSGRG00000053303) #35	ENSSGRG00000053297 #36	ENSSGRG00000053290 #37
Common carp reference	MODERN SPECIES	2	ENSCCRG00000077158	fxyd3 (ENSCCRG00000064664)	hpn (ENSCCRG00000042594)	ENSCCRG00000042654 ##7	rgl2 (ENSCCRG00000042662) #9	ENSCCRG00000042672 ##10	ENSCCRG00000031543 #11	smg5 (ENSCCRG00000002969) #12	ENSCCRG00000003270 #13	ntrk1 (ENSCCRG00000003301) #14	ENSCCRG00000063671 #15	rbm8a (ENSCCRG00000068126) #17	otud7b (ENSCCRG00000062979) #18	mtmr11 (ENSCCRG00000005000) #19	SV2A (ENSCCRG00000003867) #20	nr2f5 (ENSCCRG00000059545) #22	rpz2 (ENSCCRG00000073194) ##23	rpz (ENSCCRG00000057350) ##23	ENSCCRG00000078456 #24	rpz (ENSCCRG00000070641) ##23	ENSCCRG00000060201 ##24	rpz5 (ENSCCRG00000064692) #26	rpz4 (ENSCCRG00000003698) #27	ENSCCRG00000076342	ENSCCRG00000003694 #28	ENSCCRG00000003662 #29	ENSCCRG00000078437	ubqln4 (ENSCCRG00000050833) #30	lamtor2 (ENSCCRG00000003428) #31	rab25b (ENSCCRG00000003390) ##32	rab11al (ENSCCRG00000058461) ##33
Goldfish	MODERN SPECIES	35	fxyd3 (ENSCARG00000049352)	hpn (ENSCARG00000049421)	ENSCARG00000049595 ##7	rgl2 (ENSCARG00000049643) #9	PHF1 (ENSCARG00000049711) ##10	SYNGAP1 (ENSCARG00000050108) #11	smg5 (ENSCARG00000050312) #12	PAQR6 (ENSCARG00000050439) #13	ntrk1 (ENSCARG00000050467) #14	ENSCARG00000050539 #15	ENSCARG00000050558 #15	rbm8a (ENSCARG00000050575) #17	otud7b (ENSCARG00000050632) #18	mtmr11 (ENSCARG00000050674) #19	SV2A (ENSCARG00000050747) #20	nr2f5 (ENSCARG00000050971) #22	rpz (ENSCARG00000051041) ##23	ENSCARG00000051047 #24	ENSCARG00000051078 ##24	rpz5 (ENSCARG00000051086) #26	rpz4 (ENSCARG00000051098) #27	ENSCARG00000051113 #28	ENSCARG00000051145	tmem176l.2 (ENSCARG00000051174)	ubqln4 (ENSCARG00000051231) #30	lamtor2 (ENSCARG00000051675) #31	rab25b (ENSCARG00000051711) ##32	rab11al (ENSCARG00000051789) #33	ENSCARG00000051816 #34	ENSCARG00000051823	THSD7A (ENSCARG00000051904) #35
Cyprininae	ANCESTRAL SPECIES	83	ENSGT00940000160272.d	ENSGT00940000167370.c ##9	ENSGT00950000183180.a.b.g.a ##10	ENSGT00940000158438.n.b ##11	ENSGT00940000154566.b ##12	ENSGT00940000160567.r ##13	ENSGT00940000159412.b ##14	ENSGT00760000119652.h.a ##15	ENSGT00760000119652.g ##15	ENSGT00730000111185.eb.b ##17	ENSGT00940000159172.d ##18	ENSGT00940000160276.f ##19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a.a ##20	ENSGT00510000048165	ENSGT00940000165753.f ##22	ENSGT00940000165143.a.b.c #23	ENSGT00940000165143.a.a.e.a.a ##23	ENSGT00390000008158.b.b.a.b.c.b.a ##24	ENSGT00940000165143.a.a.f ##23	ENSGT00390000008158.b.b.a.b.c.b.b.a.a ##24	ENSGT00390000008158.b.a.f ##24	ENSGT00390000008158.b.b.a.a.b ##24	ENSGT00510000051675.e.a	ENSGT00390000010118.c.a.a.a.b ##28	ENSGT00940000155620.r.d ##30	ENSGT00390000006100.o ##31	ENSGT00940000158230.b.a.a.a ##32	ENSGT00940000165149.e.a ##33	ENSGT00940000166523.f ##34	ENSGT00410000029015.a
Cyprininae_a	ANCESTRAL SPECIES	117	ENSGT00390000002634.a.e #8	ENSGT00940000167370.c ##9	ENSGT00950000183180.a.b.g.a ##10	ENSGT00940000158438.n.b ##11	ENSGT00940000154566.b ##12	ENSGT00940000160567.r ##13	ENSGT00940000159412.b ##14	ENSGT00760000119652.h.a ##15	ENSGT00760000119652.g ##15	ENSGT00730000111185.eb.b ##17	ENSGT00940000159172.d ##18	ENSGT00940000160276.f ##19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a.a ##20	ENSGT00510000048165	ENSGT00940000165753.f ##22	ENSGT00940000165143.a.b.c #23	ENSGT00940000165143.a.a.e.a.a ##23	ENSGT00390000008158.b.b.a.b.c.b.a ##24	ENSGT00940000165143.a.a.f ##23	ENSGT00390000008158.b.b.a.b.c.b.b.a.a ##24	ENSGT00390000008158.b.a.f ##24	ENSGT00390000008158.b.b.a.a.b ##24	ENSGT00510000051675.e.a	ENSGT00390000010118.c.a.a.a.b ##28	ENSGT00940000155620.r.d ##30	ENSGT00390000006100.o ##31	ENSGT00940000158230.b.a.a.a ##32	ENSGT00940000165149.f ##33	ENSGT00940000165149.e.a ##33	ENSGT00940000166523.f ##34
Golden-line barbel	MODERN SPECIES	152	ENSSGRG00000048097 ##7	dnase2 (ENSSGRG00000048098) ##8	rgl2 (ENSSGRG00000048099) ##9	ENSSGRG00000048100 ##10	ENSSGRG00000048101 ##11	smg5 (ENSSGRG00000048102) ##12	PAQR6 (ENSSGRG00000048228) ##13	ntrk1 (ENSSGRG00000048230) ##14	ENSSGRG00000048231 ##15	ENSSGRG00000048232 ##15	rbm8a (ENSSGRG00000048234) ##17	otud7b (ENSSGRG00000048240) ##18	mtmr11 (ENSSGRG00000048241) ##19	SV2A (ENSSGRG00000048249) ##20	bola1 (ENSSGRG00000048479)	nr2f5 (ENSSGRG00000048480) ##22	rpz2 (ENSSGRG00000048484) ##23	rpz (ENSSGRG00000048485) ##23	ENSSGRG00000048486 ##24	rpz (ENSSGRG00000048487) ##23	ENSSGRG00000048488 ##24	rpz5 (ENSSGRG00000048490) ##24	rpz4 (ENSSGRG00000048492) ##24	ENSSGRG00000048493	ENSSGRG00000048495 ##28	ENSSGRG00000048497	ubqln4 (ENSSGRG00000048501) ##30	lamtor2 (ENSSGRG00000048585) ##31	rab25b (ENSSGRG00000048591) ##32	rab11al (ENSSGRG00000048595) ##33	ENSSGRG00000048597 ##34
Common carp reference	MODERN SPECIES	47	ENSCCRG00000017383 ##7	rgl2 (ENSCCRG00000000581) ##9	ENSCCRG00000000629 ##10	ENSCCRG00000031280 ##11	smg5 (ENSCCRG00000022463) ##12	ENSCCRG00000022429 ##13	ntrk1 (ENSCCRG00000022331) ##14	ENSCCRG00000081920 ##15	ENSCCRG00000070372 ##15	rbm8a (ENSCCRG00000022276) ##17	otud7b (ENSCCRG00000022268) ##18	mtmr11 (ENSCCRG00000022263) ##19	ENSCCRG00000070042	SV2A (ENSCCRG00000036969) ##20	bola1 (ENSCCRG00000070204)	nr2f5 (ENSCCRG00000040995) ##22	rpz2 (ENSCCRG00000072743) #23	rpz (ENSCCRG00000068308) ##23	ENSCCRG00000003846 ##24	rpz (ENSCCRG00000059943) ##23	ENSCCRG00000079744 ##24	rpz5 (ENSCCRG00000068261) ##24	rpz4 (ENSCCRG00000003839) ##24	ENSCCRG00000058441	ENSCCRG00000003597 ##28	ENSCCRG00000003589 #29	ENSCCRG00000058729	ENSCCRG00000003586	ENSCCRG00000003583	ubqln4 (ENSCCRG00000003459) ##30	lamtor2 (ENSCCRG00000063048) ##31
Goldfish	MODERN SPECIES	7	ENSCARG00000002877	rgl2 (ENSCARG00000002822) ##9	dnase2 (ENSCARG00000002800) #8	ENSCARG00000002787 ##10	SYNGAP1 (ENSCARG00000002740) ##11	smg5 (ENSCARG00000002607) ##12	PAQR6 (ENSCARG00000002585) ##13	ntrk1 (ENSCARG00000002564) ##14	ENSCARG00000002551 ##15	ENSCARG00000002545 ##15	rbm8a (ENSCARG00000002532) ##17	otud7b (ENSCARG00000002511) ##18	mtmr11 (ENSCARG00000002481) ##19	SV2A (ENSCARG00000002253) ##20	bola1 (ENSCARG00000002189)	nr2f5 (ENSCARG00000002177) ##22	rpz2 (ENSCARG00000002157) #23	rpz (ENSCARG00000002148) ##23	ENSCARG00000002136 ##24	rpz (ENSCARG00000002127) ##23	ENSCARG00000002117 ##24	rpz5 (ENSCARG00000002111) ##24	rpz4 (ENSCARG00000002104) ##24	ENSCARG00000002034	ubqln4 (ENSCARG00000024882) ##30	lamtor2 (ENSCARG00000024852) ##31	rab25b (ENSCARG00000024813) ##32	rab11al (ENSCARG00000024782) ##33	ENSCARG00000024765 ##34	ENSCARG00000024755	THSD7A (ENSCARG00000024164) ##35
Zebrafish	MODERN SPECIES	7	dnase2 (ENSDARG00000073893) #8	rgl2 (ENSDARG00000007727) #9	PHF1 (ENSDARG00000057439) #10	ENSDARG00000069765 #11	smg5 (ENSDARG00000041481) #12	PAQR6 (ENSDARG00000041483) ##13	ntrk1 (ENSDARG00000004586) #14	ENSDARG00000041490 #15	afp4 (ENSDARG00000095863) #15	rbm8a (ENSDARG00000016516) #17	otud7b (ENSDARG00000017220) #18	mtmr11 (ENSDARG00000069755) #19	ENSDARG00000104269	SV2A (ENSDARG00000059945) #20	bola1 (ENSDARG00000039915)	nr2f5 (ENSDARG00000033172) #22	ENSDARG00000091909	rpz (ENSDARG00000091161) ##23	rpz2 (ENSDARG00000091215) #23	rpz6 (ENSDARG00000089889) #24	rpz3 (ENSDARG00000069728) #24	rpz5 (ENSDARG00000075718) #26	rpz4 (ENSDARG00000039871) #27	ENSDARG00000099491	ENSDARG00000099715 #28	ENSDARG00000087297 #28	zgc:174938 (ENSDARG00000075622) #28	ENSDARG00000105043 #28	ENSDARG00000104134 #28	ENSDARG00000098387 #29	tmem176l.2 (ENSDARG00000089399)
Characiphysae	ANCESTRAL SPECIES	37	ENSGT01010000222294.c.b.b.a.a.b.a.b ##7	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00940000165143.a.b #23	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00410000029015	ENSGT00940000155427.a #35	ENSGT00950000182883.a.b.b #36
Channel catfish	MODERN SPECIES	15	ENSIPUG00000006948 ##7	dnase2 (ENSIPUG00000006929) #8	rgl2 (ENSIPUG00000006874) #9	PHF1 (ENSIPUG00000006848) #10	SYNGAP1 (ENSIPUG00000006816) #11	Smg5 (ENSIPUG00000006624) #12	paqr6 (ENSIPUG00000006591) #13	ntrk1 (ENSIPUG00000006577) #14	AFP4 (ENSIPUG00000006556) #15	rbm8a (ENSIPUG00000006525) #17	otud7b (ENSIPUG00000006490) #18	mtmr11 (ENSIPUG00000006433) #19	ENSIPUG00000006411	sv2a (ENSIPUG00000006382) #20	bola1 (ENSIPUG00000006373)	nr2f5 (ENSIPUG00000006336) #22	rpz2 (ENSIPUG00000006329) #23	rpz (ENSIPUG00000006322) ##23	rpz6 (ENSIPUG00000006309) #24	rpz5 (ENSIPUG00000006301) #26	rpz4 (ENSIPUG00000006299) #27	tmem176l.2 (ENSIPUG00000006283)	rpz (ENSIPUG00000006275) ##23	rpz5 (ENSIPUG00000006263) #26	rpz2 (ENSIPUG00000006255) #23	rpz2 (ENSIPUG00000006245) #23	rpz5 (ENSIPUG00000006235) #26	zgc:174938 (ENSIPUG00000006220) #28	Ubqln4 (ENSIPUG00000006179) #30	lamtor2 (ENSIPUG00000006155) #31	Rab25 (ENSIPUG00000006126) #32
Characiphysae_b	ANCESTRAL SPECIES	37	ENSGT01010000222294.c.b.b.a.a.b.a.b ##7	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00940000165143.a.b #23	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00410000029015	ENSGT00940000155427.a #35	ENSGT00950000182883.a.b.b #36
Characoidei	ANCESTRAL SPECIES	34	ENSGT01010000222294.c.b.b.a.a.b.a.b ##7	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00940000165143.a.b #23	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00410000029015	ENSGT00940000155427.a #35	ENSGT00950000182883.a.b.b #36
Red-bellied piranha	MODERN SPECIES	144	ENSPNAG00000028077	dnase2 (ENSPNAG00000028105) #8	rgl2 (ENSPNAG00000005615) #9	PHF1 (ENSPNAG00000028196) #10	SYNGAP1 (ENSPNAG00000028272) #11	smg5 (ENSPNAG00000028363) #12	PAQR6 (ENSPNAG00000004347) #13	ntrk1 (ENSPNAG00000004793) #14	afp4 (ENSPNAG00000028495) #15	rbm8a (ENSPNAG00000028502) #17	otud7b (ENSPNAG00000028593) #18	mtmr11 (ENSPNAG00000028681) #19	ENSPNAG00000028689	SV2A (ENSPNAG00000005350) #20	bola1 (ENSPNAG00000028796)	nr2f5 (ENSPNAG00000005286) #22	rpz2 (ENSPNAG00000006746) #23	rpz (ENSPNAG00000006747) ##23	rpz6 (ENSPNAG00000006975) #24	rpz5 (ENSPNAG00000004454) #26	rpz5 (ENSPNAG00000004457) #26	rpz4 (ENSPNAG00000004460) #27	ENSPNAG00000005966	ENSPNAG00000005320	ENSPNAG00000006283	ENSPNAG00000006874	zgc:174938 (ENSPNAG00000004470) #28	ubqln4 (ENSPNAG00000029005) #30	lamtor2 (ENSPNAG00000004495) #31	rab25b (ENSPNAG00000006569) #32	rab11al (ENSPNAG00000029085) #33
Mexicana tetra	MODERN SPECIES	36	ENSAMXG00000024611 ##7	dnase2 (ENSAMXG00000036815) #8	rgl2 (ENSAMXG00000024613) #9	ENSAMXG00000024614 #10	SYNGAP1 (ENSAMXG00000024615) #11	smg5 (ENSAMXG00000024616) #12	PAQR6 (ENSAMXG00000042779) #13	ntrk1 (ENSAMXG00000024617) #14	afp4 (ENSAMXG00000036698) #15	rbm8a (ENSAMXG00000040754) #17	otud7b (ENSAMXG00000024852) #18	ENSAMXG00000024623	mtmr11 (ENSAMXG00000024622) #19	SV2A (ENSAMXG00000024624) #20	bola1 (ENSAMXG00000025436)	nr2f5 (ENSAMXG00000040260) #22	rpz2 (ENSAMXG00000025025) #23	rpz (ENSAMXG00000025026) ##23	rpz6 (ENSAMXG00000025027) #24	rpz5 (ENSAMXG00000025028) #26	rpz4 (ENSAMXG00000025029) #27	ENSAMXG00000032508	ENSAMXG00000038518	ENSAMXG00000034787	zgc:174938 (ENSAMXG00000024628) #28	ubqln4 (ENSAMXG00000024629) #30	lamtor2 (ENSAMXG00000039223) #31	rab25b (ENSAMXG00000029712) #32	rab11al (ENSAMXG00000024632) #33	ENSAMXG00000024633 #34
Electric eel	MODERN SPECIES	206	tmem14ca (ENSEEEG00000015924)	ENSEEEG00000015930	EEF1E1 (ENSEEEG00000015935)	slc35b3 (ENSEEEG00000015943)	ENSEEEG00000015961	tfap2a (ENSEEEG00000015967)	bloc1s5 (ENSEEEG00000015972)	txndc5 (ENSEEEG00000015974)	bmp6 (ENSEEEG00000015985)	afp4 (ENSEEEG00000015998) #15	rbm8a (ENSEEEG00000016000) #17	otud7b (ENSEEEG00000016001) #18	mtmr11 (ENSEEEG00000016002) #19	SV2A (ENSEEEG00000016005) #20	bola1 (ENSEEEG00000016007)	nr2f5 (ENSEEEG00000016009) #22	rpz2 (ENSEEEG00000016010) #23	rpz (ENSEEEG00000016011) ##23	rpz6 (ENSEEEG00000016013) #24
Clupeiformes	ANCESTRAL SPECIES	79	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e.d #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.db.a ##17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00940000165143.a.b #23	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b	ENSGT00940000155333.B	ENSGT00390000008765
Denticle herring	MODERN SPECIES	15	ENSDCDG00000015280	pbx2 (ENSDCDG00000015258)	ENSDCDG00000015247	ENSDCDG00000015240 #8	rgl2 (ENSDCDG00000015216) #9	PHF1 (ENSDCDG00000015004) #10	SYNGAP1 (ENSDCDG00000014494) #11	smg5 (ENSDCDG00000014414) #12	PAQR6 (ENSDCDG00000014390) #13	ntrk1 (ENSDCDG00000014373) #14	rbm8a (ENSDCDG00000014349) ##17	otud7b (ENSDCDG00000014335) #18	mtmr11 (ENSDCDG00000014305) #19	SV2A (ENSDCDG00000014031) #20	bola1 (ENSDCDG00000013964)	nr2f5 (ENSDCDG00000013941) #22	rpz2 (ENSDCDG00000013924) #23	rpz (ENSDCDG00000013912) ##23	rpz6 (ENSDCDG00000023300) #24	rpz5 (ENSDCDG00000023298) #26	rpz4 (ENSDCDG00000023296) #27	zgc:174938 (ENSDCDG00000023295) #28	ubqln4 (ENSDCDG00000023261) #30	lamtor2 (ENSDCDG00000023240) #31	rab25b (ENSDCDG00000023191) #32	rab11al (ENSDCDG00000023147) #33	ENSDCDG00000023146 #34	lmna (ENSDCDG00000023114)	ENSDCDG00000023091	gpatch4 (ENSDCDG00000023083)	ENSDCDG00000023081
Atlantic herring	MODERN SPECIES	2	ENSCHAG00000006133 #10	SYNGAP1 (ENSCHAG00000005164) #11	smg5 (ENSCHAG00000002837) #12	PAQR6 (ENSCHAG00000002634) #13	ntrk1 (ENSCHAG00000002438) #14	ENSCHAG00000002411	ENSCHAG00000002343	ENSCHAG00000009602 #15	ENSCHAG00000009551 #15	ENSCHAG00000009521	rbm8a (ENSCHAG00000009474) ##17	otud7b (ENSCHAG00000009441) #18	mtmr11 (ENSCHAG00000009351) #19	SV2A (ENSCHAG00000009146) #20	bola1 (ENSCHAG00000009117)	nr2f5 (ENSCHAG00000009093) #22	ENSCHAG00000008936	rpz2 (ENSCHAG00000008923) #23	rpz (ENSCHAG00000008914) ##23	ENSCHAG00000008805	rpz6 (ENSCHAG00000008797) #24	rpz5 (ENSCHAG00000008789) #26	rpz4 (ENSCHAG00000008787) #27	tmem176l.4 (ENSCHAG00000008783)	zgc:174938 (ENSCHAG00000008762) #28	ubqln4 (ENSCHAG00000008716) #30	lamtor2 (ENSCHAG00000008683) #31	rab25b (ENSCHAG00000008626) #32	rab11al (ENSCHAG00000008561) #33	ENSCHAG00000008553 #34	lmna (ENSCHAG00000008483)
Euteleosteomorpha	ANCESTRAL SPECIES	13	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b
Protacanthopterygii	ANCESTRAL SPECIES	12	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00940000163828.a.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT01010000223409	ENSGT00510000051675	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b	ENSGT00940000155333.B
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	45	ENSGT00940000166527.e	ENSGT00940000166061.b.b	ENSGT00390000002634.a.e.f #8	ENSGT00940000167370.f #9	ENSGT00950000183180.a.b.i #10	ENSGT00940000158438.n #11	ENSGT00940000154566.e #12	ENSGT00940000160567.s #13	ENSGT00940000159412.c #14	ENSGT00760000119652.e.b #15	ENSGT00730000111185.eb.c #17	ENSGT00940000159172.g #18	ENSGT00940000160276.h #19	ENSGT00950000182940.b.a.b.a.a.c #20	ENSGT00510000048165.f	ENSGT00940000165753.c #22	ENSGT00940000163828.a.b.b.e	ENSGT00940000165143.a.b.o #23	ENSGT00390000008158.b.b.a.b.j #24	ENSGT00390000008158.b.a.p.a #26	ENSGT00390000008158.b.b.a.a.m.b.a #27	ENSGT00940000165143.a.a.r ##23	ENSGT00390000008158.b.b.a.a.m.b.b #27	ENSGT00940000165143.a.b.p.a.b #23	ENSGT00390000008158.b.a.p.b #26	ENSGT00390000008158.b.b.a.b.i.a #24	ENSGT00390000008158.b.a.o.b #26	ENSGT00390000008158.b.b.a.a.m.a #27	ENSGT00510000051675.j	ENSGT00940000155620.r.a #30	ENSGT00390000006100.q #31
Huchen	MODERN SPECIES	445	pbx2 (ENSHHUG00000039805)	ENSHHUG00000039829	dnase2 (ENSHHUG00000039834) #8	rgl2 (ENSHHUG00000039841) #9	PHF1 (ENSHHUG00000039873) #10	smg5 (ENSHHUG00000039950) #12	PAQR6 (ENSHHUG00000040050) #13	ntrk1 (ENSHHUG00000040059) #14	ENSHHUG00000040068 #14	ENSHHUG00000040082 #15	rbm8a (ENSHHUG00000040095) #17	otud7b (ENSHHUG00000040135) #18	mtmr11 (ENSHHUG00000040147) #19	SV2A (ENSHHUG00000040181) #20	bola1 (ENSHHUG00000040192)	nr2f5 (ENSHHUG00000040196) #22	ENSHHUG00000040201	ENSHHUG00000040226 #23	rpz5 (ENSHHUG00000040240) #26	ENSHHUG00000040242	ENSHHUG00000040249 #23
Salmoninae_a	ANCESTRAL SPECIES	43	ENSGT00940000166527.e	ENSGT00940000166061.b.b	ENSGT00390000002634.a.e.f #8	ENSGT00940000167370.f #9	ENSGT00950000183180.a.b.i.a #10	ENSGT00940000158438.n.e #11	ENSGT00940000154566.e #12	ENSGT00940000160567.s #13	ENSGT00940000159412.c #14	ENSGT00760000119652.e.b #15	ENSGT00730000111185.eb.c #17	ENSGT00940000159172.g #18	ENSGT00940000160276.h #19	ENSGT00950000182940.b.a.b.a.a.c #20	ENSGT00510000048165.f	ENSGT00940000165753.c #22	ENSGT00940000163828.a.b.b.e	ENSGT00390000008158.b.b.a.a.m.b.a #27	ENSGT00940000165143.a.a.r ##23	ENSGT00390000008158.b.b.a.a.m.b.b #27	ENSGT00940000165143.a.b.p.a.b #23	ENSGT00390000008158.b.a.p.b #26	ENSGT00390000008158.b.b.a.b.i.a #24	ENSGT00390000008158.b.a.o.b #26	ENSGT00390000008158.b.b.a.a.m.a #27	ENSGT00510000051675.j	ENSGT00940000155620.r.a #30	ENSGT00390000006100.q #31	ENSGT00940000158230.b.a.c #32	ENSGT00940000165149.a.b.a #33	ENSGT00940000166523.h #34
Salmo	ANCESTRAL SPECIES	32	ENSGT00940000166527.e	ENSGT00940000166061.b.b	ENSGT00390000002634.a.e.f #8	ENSGT00940000167370.f #9	ENSGT00950000183180.a.b.j.a #10	ENSGT00940000158438.n.e #11	ENSGT00940000154566.e #12	ENSGT00940000160567.s #13	ENSGT00940000159412.c #14	ENSGT00760000119652.e.b #15	ENSGT00730000111185.eb.c #17	ENSGT00940000159172.g #18	ENSGT00940000160276.h #19	ENSGT00950000182940.b.a.b.a.a.c #20	ENSGT00510000048165.f	ENSGT00940000165753.c #22	ENSGT00940000163828.a.b.b.e	ENSGT00940000165143.a.a.q.c ##23	ENSGT00390000008158.b.a.p.a #26	ENSGT00940000165143.a.b.o #23	ENSGT00390000008158.b.b.a.b.j #24	ENSGT00390000008158.b.b.a.a.m.b.a #27	ENSGT00940000165143.a.a.r ##23	ENSGT00390000008158.b.b.a.a.m.b.b #27	ENSGT00940000165143.a.b.p.a.b #23	ENSGT00390000008158.b.a.p.b #26	ENSGT00390000008158.b.b.a.b.i.a #24	ENSGT00390000008158.b.a.o.b #26	ENSGT00390000008158.b.b.a.a.m.a #27	ENSGT00510000051675.j	ENSGT00940000155620.r.a #30
Atlantic salmon	MODERN SPECIES	11	pbx2 (ENSSSAG00000005841)	dnase2 (ENSSSAG00000096026) #8	rgl2 (ENSSSAG00000073947) #9	ENSSSAG00000073965 #10	ENSSSAG00000073247 #11	smg5 (ENSSSAG00000072976) #12	ENSSSAG00000089830 #13	ENSSSAG00000082263	ntrk1 (ENSSSAG00000072961) #14	rbm8a (ENSSSAG00000112907) #17	ENSSSAG00000072959 #15	otud7b (ENSSSAG00000007068) #18	mtmr11 (ENSSSAG00000072926) #19	SV2A (ENSSSAG00000007246) #20	bola1 (ENSSSAG00000072872)	nr2f5 (ENSSSAG00000097502) #22	ENSSSAG00000072865	ENSSSAG00000072861 #23	ENSSSAG00000072860 #24	rpz5 (ENSSSAG00000103736) #26	ENSSSAG00000072290 #23	rpz5 (ENSSSAG00000072286) #26	ENSSSAG00000072283 #24	ENSSSAG00000093440 #26	rpz4 (ENSSSAG00000081899) #27	ubqln4 (ENSSSAG00000072235) #30	rab25b (ENSSSAG00000072230) #32	rab11al (ENSSSAG00000117570) #33	ENSSSAG00000091396 #34	LMNA (ENSSSAG00000072180)	ENSSSAG00000072161
River trout	MODERN SPECIES	30	pbx2 (ENSSTUG00000042384)	ENSSTUG00000042362	dnase2 (ENSSTUG00000042334) #8	rgl2 (ENSSTUG00000042149) #9	ENSSTUG00000041867 #10	SYNGAP1 (ENSSTUG00000039408) #11	smg5 (ENSSTUG00000039078) #12	PAQR6 (ENSSTUG00000039052) #13	ntrk1 (ENSSTUG00000039023) #14	ENSSTUG00000039005 #15	rbm8a (ENSSTUG00000038984) #17	otud7b (ENSSTUG00000038974) #18	mtmr11 (ENSSTUG00000038901) #19	SV2A (ENSSTUG00000038754) #20	bola1 (ENSSTUG00000038739)	nr2f5 (ENSSTUG00000038732) #22	ENSSTUG00000038687	rpz (ENSSTUG00000038673) ##23	rpz5 (ENSSTUG00000038663) #26	ENSSTUG00000038661 #23	rpz4 (ENSSTUG00000038619) #27	rpz (ENSSTUG00000038608) ##23	rpz4 (ENSSTUG00000038603) #27	rpz5 (ENSSTUG00000038579) #26	rpz5 (ENSSTUG00000038575) #26	rpz4 (ENSSTUG00000038571) #27	ENSSTUG00000038569	ubqln4 (ENSSTUG00000038433) #30	lamtor2 (ENSSTUG00000038406) #31	rab25b (ENSSTUG00000038376) #32	rab11al (ENSSTUG00000048664) #33
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00940000166527.e	ENSGT00940000166061.b.b	ENSGT00390000002634.a.e.f #8	ENSGT00940000167370.f #9	ENSGT00950000183180.a.b.i.a #10	ENSGT00940000158438.n.e #11	ENSGT00940000154566.e #12	ENSGT00940000160567.s #13	ENSGT00940000159412.c #14	ENSGT00760000119652.e.b #15	ENSGT00730000111185.eb.c #17	ENSGT00940000159172.g #18	ENSGT00940000160276.h #19	ENSGT00950000182940.b.a.b.a.a.c #20	ENSGT00510000048165.f	ENSGT00940000165753.c #22	ENSGT00940000163828.a.b.b.e	ENSGT00390000008158.b.a.p.b #26	ENSGT00390000008158.b.a.o.b #26	ENSGT00390000008158.b.b.a.a.m.a #27	ENSGT00510000051675.j	ENSGT00940000155620.r.a #30	ENSGT00390000006100.q #31	ENSGT00940000158230.b.a.c #32	ENSGT00940000165149.a.a #33	ENSGT00940000166523.h #34	ENSGT00940000157244.a.b.f	ENSGT00940000155333.B.c	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.d.b	ENSGT00940000169377.a
Oncorhynchus_a	ANCESTRAL SPECIES	39	ENSGT00940000166527.e	ENSGT00940000166061.b.b	ENSGT00390000002634.a.e.f #8	ENSGT00940000167370.f #9	ENSGT00950000183180.a.b.i.a #10	ENSGT00940000158438.n.e #11	ENSGT00940000154566.e #12	ENSGT00940000160567.s #13	ENSGT00940000159412.c #14	ENSGT00760000119652.e.b #15	ENSGT00730000111185.eb.c #17	ENSGT00940000159172.g #18	ENSGT00940000160276.h #19	ENSGT00950000182940.b.a.b.a.a.c #20	ENSGT00510000048165.f	ENSGT00940000165753.c #22	ENSGT00940000163828.a.b.b.e	ENSGT00390000008158.b.a.o.b #26	ENSGT00390000008158.b.b.a.a.m.a #27	ENSGT00510000051675.j	ENSGT00940000155620.r.a #30	ENSGT00390000006100.q #31	ENSGT00940000158230.b.a.c #32	ENSGT00940000165149.a.a #33	ENSGT00940000166523.h #34	ENSGT00940000157244.a.b.f	ENSGT00940000155333.B.c	ENSGT00390000008765	ENSGT01100000263776	ENSGT00940000169377.a	ENSGT00940000159463.n.a.a
Coho salmon	MODERN SPECIES	11	TAP1 (ENSOKIG00005027237)	pbx2 (ENSOKIG00005027218)	dnase2 (ENSOKIG00005027197) #8	rgl2 (ENSOKIG00005027119) #9	PHF1 (ENSOKIG00005026963) #10	SYNGAP1 (ENSOKIG00005024218) #11	smg5 (ENSOKIG00005024109) #12	PAQR6 (ENSOKIG00005024083) #13	ntrk1 (ENSOKIG00005024065) #14	ENSOKIG00005024041 #15	rbm8a (ENSOKIG00005024006) #17	otud7b (ENSOKIG00005023961) #18	mtmr11 (ENSOKIG00005023835) #19	SV2A (ENSOKIG00005023756) #20	ENSOKIG00005023731	nr2f5 (ENSOKIG00005023713) #22	ENSOKIG00005023704	rpz5 (ENSOKIG00005023668) #26	rpz4 (ENSOKIG00005023664) #27	ENSOKIG00005023658	ubqln4 (ENSOKIG00005023638) #30	lamtor2 (ENSOKIG00005023629) #31	rab25b (ENSOKIG00005023603) #32	rab11al (ENSOKIG00005023587) #33	ENSOKIG00005023573 #34	lmna (ENSOKIG00005023461)	ENSOKIG00005023438	gpatch4 (ENSOKIG00005023436)	ENSOKIG00005023417	ENSOKIG00005023408	mef2d (ENSOKIG00005022803)
Chinook salmon	MODERN SPECIES	22	pbx2 (ENSOTSG00005007758)	ENSOTSG00005007748	dnase2 (ENSOTSG00005007746) #8	rgl2 (ENSOTSG00005007742) #9	PHF1 (ENSOTSG00005007739) #10	SYNGAP1 (ENSOTSG00005007737) #11	smg5 (ENSOTSG00005007486) #12	PAQR6 (ENSOTSG00005007482) #13	ntrk1 (ENSOTSG00005007479) #14	ENSOTSG00005007475 #15	rbm8a (ENSOTSG00005007474) #17	otud7b (ENSOTSG00005007467) #18	mtmr11 (ENSOTSG00005007464) #19	SV2A (ENSOTSG00005007461) #20	bola1 (ENSOTSG00005007451)	nr2f5 (ENSOTSG00005007449) #22	ENSOTSG00005007448	rpz5 (ENSOTSG00005007437) #26	rpz4 (ENSOTSG00005007436) #27	ENSOTSG00005007435	ubqln4 (ENSOTSG00005007285) #30	lamtor2 (ENSOTSG00005007283) #31	rab25b (ENSOTSG00005007282) #32	rab11al (ENSOTSG00005007281) #33	ENSOTSG00005007279 #34	lmna (ENSOTSG00005007274)	ENSOTSG00005007264	gpatch4 (ENSOTSG00005007261)	ENSOTSG00005007260	ENSOTSG00005007259	mef2d (ENSOTSG00005007247)
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000052233	rgl2 (ENSOMYG00000005901) #9	ENSOMYG00000005982 #10	ENSOMYG00000005694 #11	ENSOMYG00000048396	smg5 (ENSOMYG00000005422) #12	ENSOMYG00000053347	ntrk1 (ENSOMYG00000005041) #14	ENSOMYG00000005084 #13	ENSOMYG00000004956 #15	rbm8a (ENSOMYG00000004925) #17	otud7b (ENSOMYG00000004904) #18	mtmr11 (ENSOMYG00000004861) #19	SV2A (ENSOMYG00000004803) #20	bola1 (ENSOMYG00000069669)	nr2f5 (ENSOMYG00000004772) #22	ENSOMYG00000004744	rpz5 (ENSOMYG00000074204) #26	ENSOMYG00000071196 #23	rpz5 (ENSOMYG00000051983) #26	ENSOMYG00000004495	rpz5 (ENSOMYG00000004462) #26	ENSOMYG00000056361 #27	ENSOMYG00000004411	ubqln4 (ENSOMYG00000004399) #30	mapip (ENSOMYG00000004275) #31	rab25b (ENSOMYG00000004235) #32	rab11al (ENSOMYG00000004208) #33	ENSOMYG00000004104 #34	LMNA (ENSOMYG00000003999)	ENSOMYG00000012115
Salmoninae	ANCESTRAL SPECIES	27	ENSGT00940000166527.f	ENSGT00940000175842	ENSGT00940000166061.b.a	ENSGT00390000002634.a.e.e #8	ENSGT00940000167370.e #9	ENSGT00950000183180.a.b.j.b #10	ENSGT00940000154566.f #12	ENSGT00940000160567.t #13	ENSGT00940000159412.d #14	ENSGT00760000119652.e.a #15	ENSGT00730000111185.eb.d #17	ENSGT00940000159172.h #18	ENSGT00940000160276.g #19	ENSGT00950000182940.b.a.b.a.a.d #20	ENSGT00510000048165.e	ENSGT00940000165753.d #22	ENSGT00940000163828.a.b.b.f	ENSGT00940000165143.a.b.p.a.a #23	ENSGT00940000165143.a.a.q ##23	ENSGT00390000008158.b.b.a.b.i.b #24	ENSGT00390000008158.b.a.o.a #26	ENSGT00390000008158.b.b.a.a.n #27	ENSGT01010000223409	ENSGT00510000051675.i	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r.b #30	ENSGT00390000006100.r #31	ENSGT00940000158230.b.a.d #32	ENSGT00940000165149.a.b.b #33	ENSGT00940000166523.g #34	ENSGT00940000157244.a.b.e
Salmoninae_a	ANCESTRAL SPECIES	39	ENSGT00940000166527.f	ENSGT00940000166061.b.a	ENSGT00390000002634.a.e.e #8	ENSGT00940000167370.e #9	ENSGT00950000183180.a.b.i.b.a #10	ENSGT00940000158438.n.f #11	ENSGT00940000154566.f #12	ENSGT00940000160567.t #13	ENSGT00940000159412.d #14	ENSGT00760000119652.e.a #15	ENSGT00730000111185.eb.d #17	ENSGT00940000159172.h #18	ENSGT00940000160276.g #19	ENSGT00950000182940.b.a.b.a.a.d #20	ENSGT00510000048165.e	ENSGT00940000165753.d #22	ENSGT00940000163828.a.b.b.f	ENSGT00940000165143.a.b.p.a.a #23	ENSGT00940000165143.a.a.q ##23	ENSGT00390000008158.b.b.a.b.i.b #24	ENSGT00390000008158.b.a.o.a #26	ENSGT00390000008158.b.b.a.a.n #27	ENSGT01010000223409	ENSGT00510000051675.i	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r.b #30	ENSGT00390000006100.r #31	ENSGT00940000158230.b.a.d #32	ENSGT00940000165149.a.b.b #33	ENSGT00940000166523.g #34	ENSGT00940000157244.a.b.e
Salmo	ANCESTRAL SPECIES	1	ENSGT00940000166527.f	ENSGT00940000166061.b.a	ENSGT00390000002634.a.e.e #8	ENSGT00940000167370.e #9	ENSGT00950000183180.a.b.i.b.a #10	ENSGT00940000158438.n.f #11	ENSGT00940000154566.f #12	ENSGT00940000160567.t #13	ENSGT00940000159412.d #14	ENSGT00760000119652.e.a #15	ENSGT00730000111185.eb.d #17	ENSGT00940000159172.h #18	ENSGT00940000160276.g #19	ENSGT00950000182940.b.a.b.a.a.d #20	ENSGT00510000048165.e	ENSGT00940000165753.d #22	ENSGT00940000163828.a.b.b.f	ENSGT00940000165143.a.b.p.a.a #23	ENSGT00940000165143.a.a.q.d ##23	ENSGT00390000008158.b.b.a.b.i.b.b #24	ENSGT00390000008158.b.a.o.a #26	ENSGT00390000008158.b.b.a.a.n #27	ENSGT00510000051675.i	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r.b #30	ENSGT00390000006100.r #31	ENSGT00940000158230.b.a.d #32	ENSGT00940000165149.a.b.b #33	ENSGT00940000166523.g #34	ENSGT00940000157244.a.b.e	ENSGT00940000155333.B.d
River trout	MODERN SPECIES	22	ENSSTUG00000036100	dnase2 (ENSSTUG00000036111) #8	rgl2 (ENSSTUG00000036123) #9	PHF1 (ENSSTUG00000036207) #10	SYNGAP1 (ENSSTUG00000036422) #11	smg5 (ENSSTUG00000036549) #12	PAQR6 (ENSSTUG00000037418) #13	ntrk1 (ENSSTUG00000037432) #14	ENSSTUG00000037480 #15	rbm8a (ENSSTUG00000037492) #17	ENSSTUG00000037511	otud7b (ENSSTUG00000037519) #18	mtmr11 (ENSSTUG00000037559) #19	SV2A (ENSSTUG00000037605) #20	bola1 (ENSSTUG00000038021)	nr2f5 (ENSSTUG00000038025) #22	ENSSTUG00000038041	rpz (ENSSTUG00000038080) ##23	rpz6 (ENSSTUG00000038082) #24	rpz5 (ENSSTUG00000038084) #26	ENSSTUG00000038103	zgc:174938 (ENSSTUG00000038170) #28	ubqln4 (ENSSTUG00000038189) #30	lamtor2 (ENSSTUG00000038524) #31	rab25b (ENSSTUG00000038546) #32	rab11al (ENSSTUG00000038614) #33	ENSSTUG00000038657 #34	lmna (ENSSTUG00000038669)	ENSSTUG00000038776	gpatch4 (ENSSTUG00000038813)	ENSSTUG00000038824
Atlantic salmon	MODERN SPECIES	24	pbx2 (ENSSSAG00000073977)	ENSSSAG00000119738	dnase2 (ENSSSAG00000073967) #8	rgl2 (ENSSSAG00000005857) #9	ENSSSAG00000005949 #10	ENSSSAG00000006576 #11	smg5 (ENSSSAG00000006730) #12	ENSSSAG00000100845 #13	ntrk1 (ENSSSAG00000007032) #14	ENSSSAG00000007048 #15	rbm8a (ENSSSAG00000007055) #17	otud7b (ENSSSAG00000109418) #18	mtmr11 (ENSSSAG00000007191) #19	SV2A (ENSSSAG00000072877) #20	bola1 (ENSSSAG00000008156)	nr2f5 (ENSSSAG00000083916) #22	ENSSSAG00000008165	rpz (ENSSSAG00000091955) ##23	ENSSSAG00000072291 #23	ENSSSAG00000116173 #24	ENSSSAG00000008179 #24	rpz5 (ENSSSAG00000121454) #26	ENSSSAG00000121934	rpz4 (ENSSSAG00000092151) #27	ENSSSAG00000008196	ENSSSAG00000120565 #28	M4A8A (ENSSSAG00000010511)	ENSSSAG00000118258 #28	ENSSSAG00000119551 #28	m4a8a (ENSSSAG00000060046)	ENSSSAG00000089912 #28
Oncorhynchus	ANCESTRAL SPECIES	38	ENSGT00940000166061.b.a	ENSGT00940000175842	ENSGT00390000002634.a.e.e #8	ENSGT00940000167370.e #9	ENSGT00950000183180.a.b.i.b.a #10	ENSGT00940000158438.n.f #11	ENSGT00940000154566.f #12	ENSGT00940000160567.t #13	ENSGT00940000159412.d #14	ENSGT00760000119652.e.a #15	ENSGT00730000111185.eb.d #17	ENSGT00940000159172.h #18	ENSGT00940000160276.g #19	ENSGT00950000182940.b.a.b.a.a.d #20	ENSGT00510000048165.e	ENSGT00940000165753.d #22	ENSGT00940000163828.a.b.b.f	ENSGT00940000165143.a.b.p.a.a #23	ENSGT00940000165143.a.a.q ##23	ENSGT00390000008158.b.b.a.b.i.b #24	ENSGT00390000008158.b.a.o.a #26	ENSGT00390000008158.b.b.a.a.n #27	ENSGT00510000051675.i.f	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r.b #30	ENSGT00390000006100.r #31	ENSGT00940000158230.b.a.d #32	ENSGT00940000165149.a.b.b #33	ENSGT00940000166523.g #34	ENSGT00940000157244.a.b.e	ENSGT00940000155333.B.d
Oncorhynchus_a	ANCESTRAL SPECIES	26	ENSGT00940000166061.b.a	ENSGT00940000166527.f.b	ENSGT00390000002634.a.e.e #8	ENSGT00940000167370.e #9	ENSGT00950000183180.a.b.i.b.a #10	ENSGT00940000158438.n.f #11	ENSGT00940000154566.f #12	ENSGT00940000160567.t #13	ENSGT00940000159412.d #14	ENSGT00760000119652.e.a #15	ENSGT00730000111185.eb.d #17	ENSGT00940000159172.h #18	ENSGT00940000160276.g #19	ENSGT00950000182940.b.a.b.a.a.d #20	ENSGT00510000048165.e	ENSGT00940000165753.d #22	ENSGT00940000163828.a.b.b.f	ENSGT00940000165143.a.b.p.a.a #23	ENSGT00940000165143.a.a.q ##23	ENSGT00390000008158.b.b.a.b.i.b #24	ENSGT00390000008158.b.a.o.a #26	ENSGT00390000008158.b.b.a.a.n #27	ENSGT01010000223409	ENSGT00510000051675.i.e	ENSGT01000000219592	ENSGT00390000010118.c.a.a #28	ENSGT00510000051675.i.f	ENSGT00940000155620.r.b #30	ENSGT00390000006100.r #31	ENSGT00940000158230.b.a.d #32	ENSGT00940000165149.a.b.b #33
Coho salmon	MODERN SPECIES	4	pbx2 (ENSOKIG00005028150)	dnase2 (ENSOKIG00005028160) #8	ENSOKIG00005028167	rgl2 (ENSOKIG00005028179) #9	PHF1 (ENSOKIG00005028305) #10	SYNGAP1 (ENSOKIG00005028484) #11	smg5 (ENSOKIG00005028698) #12	PAQR6 (ENSOKIG00005028796) #13	ntrk1 (ENSOKIG00005028828) #14	ENSOKIG00005028887 #15	rbm8a (ENSOKIG00005028902) #17	otud7b (ENSOKIG00005028941) #18	mtmr11 (ENSOKIG00005028972) #19	SV2A (ENSOKIG00005029023) #20	bola1 (ENSOKIG00005029249)	nr2f5 (ENSOKIG00005029260) #22	ENSOKIG00005020393	ENSOKIG00005020405 #23	rpz (ENSOKIG00005020414) ##23	rpz6 (ENSOKIG00005020418) #24	rpz5 (ENSOKIG00005020423) #26	rpz4 (ENSOKIG00005020427) #27	ENSOKIG00005020432	ENSOKIG00005020447	zgc:174938 (ENSOKIG00005020454) #28	ENSOKIG00005020464	ubqln4 (ENSOKIG00005020486) #30	lamtor2 (ENSOKIG00005020878) #31	rab25b (ENSOKIG00005020905) #32	rab11al (ENSOKIG00005020937) #33	ENSOKIG00005021034 #34
Chinook salmon	MODERN SPECIES	15	pbx2 (ENSOTSG00005016195)	ENSOTSG00005016193	ENSOTSG00005016191	dnase2 (ENSOTSG00005016188) #8	rgl2 (ENSOTSG00005016183) #9	ENSOTSG00005016164 #10	SYNGAP1 (ENSOTSG00005016140) #11	smg5 (ENSOTSG00005016088) #12	PAQR6 (ENSOTSG00005016084) #13	ntrk1 (ENSOTSG00005016082) #14	ENSOTSG00005016078 #15	rbm8a (ENSOTSG00005016077) #17	otud7b (ENSOTSG00005016074) #18	mtmr11 (ENSOTSG00005016072) #19	bola1 (ENSOTSG00005016067)	nr2f5 (ENSOTSG00005016066) #22	ENSOTSG00005016032	ENSOTSG00005016214 #23	rpz (ENSOTSG00005016213) ##23	ENSOTSG00005016211 #24	ENSOTSG00005016210 #24	ENSOTSG00005016209	rpz5 (ENSOTSG00005016208) #26	rpz4 (ENSOTSG00005016207) #27	ENSOTSG00005016206	ENSOTSG00005016205	ENSOTSG00005016204	ubqln4 (ENSOTSG00005016076) #30	lamtor2 (ENSOTSG00005016073) #31	rab25b (ENSOTSG00005016070) #32	ENSOTSG00005016068 #33
Rainbow trout	MODERN SPECIES	11	rgl2 (ENSOMYG00000002302) #9	ENSOMYG00000002193 #10	ENSOMYG00000058879	ENSOMYG00000002081 #11	ENSOMYG00000062449	ENSOMYG00000048746	smg5 (ENSOMYG00000001694) #12	ENSOMYG00000001438 #13	ntrk1 (ENSOMYG00000001377) #14	ENSOMYG00000001191 #15	rbm8a (ENSOMYG00000001267) #17	otud7b (ENSOMYG00000001215) #18	mtmr11 (ENSOMYG00000001182) #19	SV2A (ENSOMYG00000001165) #20	bola1 (ENSOMYG00000001141)	nr2f5 (ENSOMYG00000001131) #22	ENSOMYG00000001121	ENSOMYG00000001086 #23	rpz (ENSOMYG00000077708) ##23	rpz6 (ENSOMYG00000001075) #24	ENSOMYG00000069366	rpz5 (ENSOMYG00000001071) #26	rpz4 (ENSOMYG00000001065) #27	ENSOMYG00000057262	zgc:174938 (ENSOMYG00000000981) #28	ENSOMYG00000049461	ubqln4 (ENSOMYG00000000958) #30	lamtor2 (ENSOMYG00000000922) #31	rab25b (ENSOMYG00000000916) #32	rab11al (ENSOMYG00000000878) #33	ENSOMYG00000000827 #34
Huchen	DUPLICATION
Huchen	MODERN SPECIES	597	ENSHHUG00000036135	pbx2 (ENSHHUG00000036137)	ENSHHUG00000036142	dnase2 (ENSHHUG00000036145) #8	rgl2 (ENSHHUG00000036159) #9	ENSHHUG00000036212 #10	smg5 (ENSHHUG00000036250) #12	PAQR6 (ENSHHUG00000036265) #13	ntrk1 (ENSHHUG00000036280) #14	ENSHHUG00000036298 #15	rbm8a (ENSHHUG00000036306) #17	otud7b (ENSHHUG00000036354) #18	mtmr11 (ENSHHUG00000036360) #19	SV2A (ENSHHUG00000036379) #20	bola1 (ENSHHUG00000036546)	nr2f5 (ENSHHUG00000036548) #22
Huchen	MODERN SPECIES	11171																nr2f5 (ENSHHUG00000013578) #22
Northern pike	MODERN SPECIES	19	pbx2 (ENSELUG00000013086)	ENSELUG00000013047	dnase2 (ENSELUG00000013030) #8	rgl2 (ENSELUG00000000473) #9	PHF1 (ENSELUG00000012939) #10	SYNGAP1 (ENSELUG00000012732) #11	smg5 (ENSELUG00000012585) #12	PAQR6 (ENSELUG00000012518) #13	ntrk1 (ENSELUG00000012483) #14	rbm8a (ENSELUG00000033507) #17	otud7b (ENSELUG00000000461) #18	mtmr11 (ENSELUG00000012368) #19	ENSELUG00000012315	SV2A (ENSELUG00000001522) #20	bola1 (ENSELUG00000012263)	nr2f5 (ENSELUG00000012245) #22	ENSELUG00000012232	ENSELUG00000027498	rpz (ENSELUG00000000452) ##23	rpz6 (ENSELUG00000012205) #24	rpz5 (ENSELUG00000012198) #26	rpz5 (ENSELUG00000012177) #26	rpz4 (ENSELUG00000012173) #27	tmem176l.2 (ENSELUG00000012170)	ubqln4 (ENSELUG00000012144) #30	lamtor2 (ENSELUG00000012106) #31	rab25b (ENSELUG00000012060) #32	rab11al (ENSELUG00000012035) #33	ENSELUG00000012012 #34	lmna (ENSELUG00000011994)	ENSELUG00000011947
Acanthomorphata	ANCESTRAL SPECIES	34	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b	ENSGT00940000155333.B	ENSGT00390000008765	ENSGT01030000234575.c.a.a.a.a.a.b.b.a
Cod	MODERN SPECIES	130																ENSGMOG00000014975 #22
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b	ENSGT00940000155333.B
Pinecone sodierfish	MODERN SPECIES	7	pbx2 (ENSMMDG00005003360)	ENSMMDG00005003352	dnase2 (ENSMMDG00005003346) #8	rgl2 (ENSMMDG00005003337) #9	ENSMMDG00005003308 #10	SYNGAP1 (ENSMMDG00005003258) #11	smg5 (ENSMMDG00005003221) #12	PAQR6 (ENSMMDG00005003200) #13	ntrk1 (ENSMMDG00005003192) #14	afp4 (ENSMMDG00005003187) #15	rbm8a (ENSMMDG00005003183) #17	otud7b (ENSMMDG00005003178) #18	mtmr11 (ENSMMDG00005003169) #19	SV2A (ENSMMDG00005003162) #20	bola1 (ENSMMDG00005003158)	nr2f5 (ENSMMDG00005003152) #22	ENSMMDG00005003131	rpz (ENSMMDG00005003122) ##23	ENSMMDG00005003118 #23	ENSMMDG00005003117 #24	rpz5 (ENSMMDG00005003114) #26	rpz4 (ENSMMDG00005003112) #27	ENSMMDG00005003108 #24	rpz (ENSMMDG00005003104) ##23	ENSMMDG00005003102 #24	rpz (ENSMMDG00005003100) ##23	ENSMMDG00005003094	ENSMMDG00005003085	zgc:174938 (ENSMMDG00005003081) #28	ubqln4 (ENSMMDG00005003068) #30	lamtor2 (ENSMMDG00005003058) #31
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b	ENSGT00940000155333.B
Tiger tail seahorse	MODERN SPECIES	100	ENSHCOG00000010428	pbx2 (ENSHCOG00000010421)	ENSHCOG00000010368	dnase2 (ENSHCOG00000010351) #8	rgl2 (ENSHCOG00000010340) #9	PHF1 (ENSHCOG00000010317) #10	SYNGAP1 (ENSHCOG00000010278) #11	smg5 (ENSHCOG00000010229) #12	PAQR6 (ENSHCOG00000010171) #13	ntrk1 (ENSHCOG00000010136) #14	rbm8a (ENSHCOG00000010122) #17	otud7b (ENSHCOG00000010099) #18	mtmr11 (ENSHCOG00000010048) #19	SV2A (ENSHCOG00000009997) #20	bola1 (ENSHCOG00000009965)	nr2f5 (ENSHCOG00000009946) #22	ENSHCOG00000009932	rpz (ENSHCOG00000009921) ##23	rpz6 (ENSHCOG00000009910) #24
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b
Carangaria	ANCESTRAL SPECIES	1	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b
Carangaria_A	ANCESTRAL SPECIES	27	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b
Seriola	ANCESTRAL SPECIES	76	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00390000013670.f	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34
Yellowtail amberjack	MODERN SPECIES	2757	dnase2 (ENSSLDG00000011177) #8	rgl2 (ENSSLDG00000011233) #9	PHF1 (ENSSLDG00000011308) #10	SYNGAP1 (ENSSLDG00000011345) #11	smg5 (ENSSLDG00000011418) #12	PAQR6 (ENSSLDG00000011543) #13	ntrk1 (ENSSLDG00000011591) #14	afp4 (ENSSLDG00000011648) #15	rbm8a (ENSSLDG00000011664) #17	otud7b (ENSSLDG00000011700) #18	mtmr11 (ENSSLDG00000011741) #19	ENSSLDG00000011800	rsad2 (ENSSLDG00000011814)	SV2A (ENSSLDG00000011841) #20	bola1 (ENSSLDG00000011888)	nr2f5 (ENSSLDG00000011902) #22	ENSSLDG00000011925	rpz (ENSSLDG00000011962) ##23	ENSSLDG00000011974 #24	rpz5 (ENSSLDG00000011992) #26	rpz4 (ENSSLDG00000011999) #27	ENSSLDG00000012016	ENSSLDG00000012048	ENSSLDG00000012058	zgc:174938 (ENSSLDG00000012070) #28	ubqln4 (ENSSLDG00000012080) #30	rab25b (ENSSLDG00000012091) #32	rab11al (ENSSLDG00000012116) #33	ENSSLDG00000012129 #34	lmna (ENSSLDG00000012145)	ENSSLDG00000012240
Greater amberjack	MODERN SPECIES	44	ENSSDUG00000005777	etsrp (ENSSDUG00000005786)	fli1rs (ENSSDUG00000005810)	zp3d.2 (ENSSDUG00000005845)	ENSSDUG00000005860	ENSSDUG00000005867	ENSSDUG00000005882	rbm8a (ENSSDUG00000005911) #17	otud7b (ENSSDUG00000005932) #18	mtmr11 (ENSSDUG00000005986) #19	ENSSDUG00000006022	rsad2 (ENSSDUG00000006029)	SV2A (ENSSDUG00000006062) #20	bola1 (ENSSDUG00000006093)	bola1 (ENSSDUG00000006099)	nr2f5 (ENSSDUG00000006112) #22	ENSSDUG00000006116	ENSSDUG00000006124	rpz (ENSSDUG00000006138) ##23	rpz6 (ENSSDUG00000006147) #24	rpz5 (ENSSDUG00000006159) #26	rpz4 (ENSSDUG00000006166) #27	ENSSDUG00000006170	ENSSDUG00000006180	ENSSDUG00000006200	zgc:174938 (ENSSDUG00000006207) #28	ubqln4 (ENSSDUG00000006235) #30	lamtor2 (ENSSDUG00000006243) #31	rab25b (ENSSDUG00000006260) #32	rab11al (ENSSDUG00000006278) #33	ENSSDUG00000006298 #34
Barramundi perch	MODERN SPECIES	104	pbx2 (ENSLCAG00010001121)	ENSLCAG00010001127	dnase2 (ENSLCAG00010001131) #8	rgl2 (ENSLCAG00010001143) #9	ENSLCAG00010001179 #10	SYNGAP1 (ENSLCAG00010001229) #11	smg5 (ENSLCAG00010001297) #12	PAQR6 (ENSLCAG00010001320) #13	ntrk1 (ENSLCAG00010001325) #14	afp4 (ENSLCAG00010001346) #15	rbm8a (ENSLCAG00010001353) #17	otud7b (ENSLCAG00010001374) #18	mtmr11 (ENSLCAG00010001385) #19	SV2A (ENSLCAG00010001399) #20	bola1 (ENSLCAG00010001414)	nr2f5 (ENSLCAG00010001419) #22	ENSLCAG00010001426	rpz (ENSLCAG00010001429) ##23	rpz6 (ENSLCAG00010001431) #24	rpz5 (ENSLCAG00010001433) #26	rpz4 (ENSLCAG00010001434) #27	ENSLCAG00010001436	ENSLCAG00010001441	ENSLCAG00010001444	ENSLCAG00010001445	zgc:174938 (ENSLCAG00010001449) #28	ubqln4 (ENSLCAG00010001452) #30	lamtor2 (ENSLCAG00010001456) #31	rab25b (ENSLCAG00010001467) #32	rab11al (ENSLCAG00010001475) #33	ENSLCAG00010001496 #34
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b	ENSGT00940000155333.B
Tongue sole	MODERN SPECIES	4	MEGF8 (ENSCSEG00000011714)	ENSCSEG00000011780	CXCR3 (ENSCSEG00000011788)	cxcr3.3 (ENSCSEG00000011791)	cxcr3.2 (ENSCSEG00000011801)	cnfn (ENSCSEG00000011804)	pafah1b3 (ENSCSEG00000011811)	bola1 (ENSCSEG00000011813)	SV2A (ENSCSEG00000011818) #20	ENSCSEG00000011831	mtmr11 (ENSCSEG00000011837) #19	otud7b (ENSCSEG00000011851) #18	rbm8a (ENSCSEG00000011865) #17	ENSCSEG00000011878	ENSCSEG00000011891	nr2f5 (ENSCSEG00000011922) #22	ENSCSEG00000011928	rpz (ENSCSEG00000011938) ##23	rpz6 (ENSCSEG00000011944) #24	rpz5 (ENSCSEG00000011948) #26	rpz4 (ENSCSEG00000011950) #27	tmem176l.4 (ENSCSEG00000011957)	lamtor2 (ENSCSEG00000011971) #31	rab25b (ENSCSEG00000011982) #32	rab11al (ENSCSEG00000011996) #33	ENSCSEG00000012003 #34	lmna (ENSCSEG00000012011)	ENSCSEG00000012025	gpatch4 (ENSCSEG00000012030)	bag6 (ENSCSEG00000012039)	glrx3 (ENSCSEG00000012085)
Turbot	MODERN SPECIES	7	pbx2 (ENSSMAG00000013369)	ENSSMAG00000013359	dnase2 (ENSSMAG00000013349) #8	rgl2 (ENSSMAG00000013255) #9	ENSSMAG00000013225 #10	ENSSMAG00000013154 #11	smg5 (ENSSMAG00000013059) #12	ENSSMAG00000013042 #13	ntrk1 (ENSSMAG00000013025) #14	afp4 (ENSSMAG00000032387) #15	rbm8a (ENSSMAG00000012998) #17	otud7b (ENSSMAG00000012942) #18	mtmr11 (ENSSMAG00000012874) #19	SV2A (ENSSMAG00000012812) #20	bola1 (ENSSMAG00000012800)	nr2f5 (ENSSMAG00000012789) #22	ENSSMAG00000031037	rpz (ENSSMAG00000012771) ##23	rpz6 (ENSSMAG00000035282) #24	rpz5 (ENSSMAG00000012752) #26	rpz4 (ENSSMAG00000012747) #27	ENSSMAG00000012741	ENSSMAG00000012727	ENSSMAG00000012624	ENSSMAG00000012614	DCK (ENSSMAG00000012596)	ENSSMAG00000012477	NPFFR2 (ENSSMAG00000012462)	ENSSMAG00000012451	ENSSMAG00000030823	ENSSMAG00000012328
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b	ENSGT00940000155333.B
Zig-zag eel	MODERN SPECIES	7	pbx2 (ENSMAMG00000010824)	ENSMAMG00000010815	dnase2 (ENSMAMG00000010809) #8	rgl2 (ENSMAMG00000010763) #9	ENSMAMG00000010747 #10	ENSMAMG00000010739 #11	smg5 (ENSMAMG00000010683) #12	ENSMAMG00000010623 #13	ntrk1 (ENSMAMG00000010588) #14	afp4 (ENSMAMG00000010579) #15	rbm8a (ENSMAMG00000010565) #17	otud7b (ENSMAMG00000028073) #18	mtmr11 (ENSMAMG00000010471) #19	SV2A (ENSMAMG00000010430) #20	bola1 (ENSMAMG00000010420)	nr2f5 (ENSMAMG00000010413) #22	ENSMAMG00000027679	rpz (ENSMAMG00000024469) ##23	rpz6 (ENSMAMG00000010377) #24	rpz5 (ENSMAMG00000010370) #26	rpz4 (ENSMAMG00000010365) #27	ENSMAMG00000010351	ENSMAMG00000010325	zgc:174938 (ENSMAMG00000010322) #28	lamtor2 (ENSMAMG00000025086) #31	rab25b (ENSMAMG00000010297) #32	rab11al (ENSMAMG00000010278) #33	ENSMAMG00000010269 #34	LMNA (ENSMAMG00000010224)	ENSMAMG00000010170	ENSMAMG00000010128
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b	ENSGT00940000155333.B
Climbing perch	MODERN SPECIES	7	ENSATEG00000005209	dnase2 (ENSATEG00000005230) #8	rgl2 (ENSATEG00000005242) #9	ENSATEG00000005287 #10	ENSATEG00000005290 #11	smg5 (ENSATEG00000005348) #12	ENSATEG00000005447 #13	ntrk1 (ENSATEG00000005463) #14	ENSATEG00000025342	afp4 (ENSATEG00000028682) #15	rbm8a (ENSATEG00000005630) #17	otud7b (ENSATEG00000005677) #18	mtmr11 (ENSATEG00000005761) #19	SV2A (ENSATEG00000005856) #20	bola1 (ENSATEG00000005915)	nr2f5 (ENSATEG00000005947) #22	ENSATEG00000005961	rpz (ENSATEG00000005967) ##23	rpz6 (ENSATEG00000005973) #24	rpz5 (ENSATEG00000005981) #26	rpz4 (ENSATEG00000006002) #27	ENSATEG00000006009	ENSATEG00000006066	ENSATEG00000006075	ENSATEG00000006083	zgc:174938 (ENSATEG00000006093) #28	lamtor2 (ENSATEG00000006099) #31	rab25b (ENSATEG00000006124) #32	rab11al (ENSATEG00000006156) #33	ENSATEG00000006186 #34	LMNA (ENSATEG00000006201)
Siamese fighting fish	MODERN SPECIES	7	pbx2 (ENSBSLG00000015536)	ENSBSLG00000015526	dnase2 (ENSBSLG00000015520) #8	rgl2 (ENSBSLG00000015431) #9	PHF1 (ENSBSLG00000015396) #10	SYNGAP1 (ENSBSLG00000015193) #11	smg5 (ENSBSLG00000014276) #12	PAQR6 (ENSBSLG00000014162) #13	ntrk1 (ENSBSLG00000014067) #14	ENSBSLG00000013786	rbm8a (ENSBSLG00000013774) #17	otud7b (ENSBSLG00000013769) #18	mtmr11 (ENSBSLG00000013750) #19	SV2A (ENSBSLG00000013319) #20	bola1 (ENSBSLG00000019240)	nr2f5 (ENSBSLG00000019234) #22	ENSBSLG00000019220	rpz (ENSBSLG00000019204) ##23	rpz6 (ENSBSLG00000019201) #24	rpz5 (ENSBSLG00000019197) #26	rpz4 (ENSBSLG00000019195) #27	ENSBSLG00000019187	ENSBSLG00000019170	ENSBSLG00000019166	ENSBSLG00000019161	zgc:174938 (ENSBSLG00000019156) #28	lamtor2 (ENSBSLG00000019151) #31	rab25b (ENSBSLG00000019118) #32	rab11al (ENSBSLG00000019078) #33	ENSBSLG00000019060 #34	lmna (ENSBSLG00000018857)
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b
Tetraodontidae	ANCESTRAL SPECIES	84		ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00730000111185.eb #17	ENSGT00940000159172.e #18	ENSGT00940000160276 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.g
Fugu	MODERN SPECIES	19	ENSTRUG00000027138	pbx2 (ENSTRUG00000011925)	dnase2 (ENSTRUG00000012127) #8	rgl2 (ENSTRUG00000012178) #9	ENSTRUG00000021243 #10	SYNGAP1 (ENSTRUG00000012329) #11	smg5 (ENSTRUG00000012580) #12	PAQR6 (ENSTRUG00000012783) #13	ntrk1 (ENSTRUG00000012924) #14	rbm8a (ENSTRUG00000013173) #17	otud7b (ENSTRUG00000013218) #18	mtmr11 (ENSTRUG00000002819) #19	SV2A (ENSTRUG00000003368) #20	ENSTRUG00000026935	bola1 (ENSTRUG00000023229)	nr2f5 (ENSTRUG00000023437) #22	ENSTRUG00000004644	rpz (ENSTRUG00000023855) ##23	rpz6 (ENSTRUG00000021390) #24	rpz5 (ENSTRUG00000024495) #26	rpz4 (ENSTRUG00000004687) #27	tmem176l.4 (ENSTRUG00000024272)	ENSTRUG00000026263	ppt2a.2 (ENSTRUG00000004692)	dhx16 (ENSTRUG00000004927)	rnf183 (ENSTRUG00000005306)	mgat1a (ENSTRUG00000005316)	sh3bp5la (ENSTRUG00000005397)	GABBR1 (ENSTRUG00000005601)	tnfa (ENSTRUG00000005908)	tnfb (ENSTRUG00000006012)
Tetraodon	MODERN SPECIES	26	CSF3R (ENSTNIG00000001409)	GRIK3 (ENSTNIG00000012189)	PIEZO1 (ENSTNIG00000003588)	ENSTNIG00000003589	ENSTNIG00000003590	ENSTNIG00000003591	ENSTNIG00000003592	tm9sf2 (ENSTNIG00000003593)	SYNGAP1 (ENSTNIG00000010304) #11	smg5 (ENSTNIG00000010303) #12	PAQR6 (ENSTNIG00000010302) #13	ntrk1 (ENSTNIG00000010301) #14	mtmr11 (ENSTNIG00000010300) #19	SV2A (ENSTNIG00000010299) #20	bola1 (ENSTNIG00000010298)	nr2f5 (ENSTNIG00000010297) #22	ENSTNIG00000001794	rpz5 (ENSTNIG00000000513) #26	rpz4 (ENSTNIG00000005885) #27	ENSTNIG00000006117	dhx16 (ENSTNIG00000011641)	rnf183 (ENSTNIG00000002401)	ENSTNIG00000011642	mgat1a (ENSTNIG00000011643)	sh3bp5la (ENSTNIG00000011644)	ENSTNIG00000000469	ENSTNIG00000011645	ENSTNIG00000013817	ankmy2a (ENSTNIG00000011646)	crppa (ENSTNIG00000001407)	ENSTNIG00000002629
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b
Ballan wrasse	MODERN SPECIES	219									afp4 (ENSLBEG00000015698) #15	rbm8a (ENSLBEG00000015720) #17	otud7b (ENSLBEG00000015772) #18	mtmr11 (ENSLBEG00000015901) #19	ENSLBEG00000015997	SV2A (ENSLBEG00000016017) #20	bola1 (ENSLBEG00000016042)	nr2f5 (ENSLBEG00000016060) #22	ENSLBEG00000016085	rpz (ENSLBEG00000016105) ##23	rpz6 (ENSLBEG00000016124) #24	rpz5 (ENSLBEG00000016141) #26	rpz5 (ENSLBEG00000016154) #26	rpz4 (ENSLBEG00000016167) #27	ENSLBEG00000016182	ENSLBEG00000016203	ENSLBEG00000016222	ENSLBEG00000016237	ENSLBEG00000016253	ENSLBEG00000016277	gpatch4 (ENSLBEG00000016296)	ENSLBEG00000016316	lmna (ENSLBEG00000016348)
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00990000204623	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00940000170682	ENSGT00940000167095.B	ENSGT00940000163828.b.b.d	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33
European seabass	MODERN SPECIES	6	ENSDLAG00005006777	ENSDLAG00005006778	pbx2 (ENSDLAG00005029739)	rgl2 (ENSDLAG00005006798) #9	ENSDLAG00005006786	dnase2 (ENSDLAG00005006794) #8	ENSDLAG00005006830 #10	ENSDLAG00005006852 #11	smg5 (ENSDLAG00005007093) #12	ENSDLAG00005008726 #13	ntrk1 (ENSDLAG00005009140) #14	afp4 (ENSDLAG00005009173) #15	otud7b (ENSDLAG00005009187) #18	mtmr11 (ENSDLAG00005009208) #19	ENSDLAG00005031318 #20	nr2f5 (ENSDLAG00005009248) #22	ENSDLAG00005009259	ENSDLAG00005034002	ENSDLAG00005035037	rpz6 (ENSDLAG00005028300) #24	rpz5 (ENSDLAG00005027375) #26	rpz4 (ENSDLAG00005026708) #27	ENSDLAG00005009289	ENSDLAG00005009296	ENSDLAG00005029399	zgc:174938 (ENSDLAG00005014746) #28	ENSDLAG00005026442 #30	lamtor2 (ENSDLAG00005009320) #31	rab25b (ENSDLAG00005009338) #32	ENSDLAG00005033062 #34	LMNA (ENSDLAG00005009437)
Large yellow croaker	MODERN SPECIES	484	ENSLCRG00005002934	dnase2 (ENSLCRG00005002931) #8	rgl2 (ENSLCRG00005002916) #9	ENSLCRG00005002911	PHF1 (ENSLCRG00005002907) #10	SYNGAP1 (ENSLCRG00005002796) #11	smg5 (ENSLCRG00005002757) #12	PAQR6 (ENSLCRG00005002751) #13	ntrk1 (ENSLCRG00005002543) #14	afp4 (ENSLCRG00005002533) #15	rbm8a (ENSLCRG00005002524) #17	otud7b (ENSLCRG00005002517) #18	mtmr11 (ENSLCRG00005002489) #19	SV2A (ENSLCRG00005001350) #20	bola1 (ENSLCRG00005001335)	nr2f5 (ENSLCRG00005001332) #22	ENSLCRG00005001329	ENSLCRG00005001322	ENSLCRG00005001319	rpz (ENSLCRG00005001318) ##23	rpz6 (ENSLCRG00005001317) #24	rpz5 (ENSLCRG00005001315) #26	rpz4 (ENSLCRG00005001314) #27	ENSLCRG00005001306	ENSLCRG00005001299	ENSLCRG00005001297	ENSLCRG00005001292	ENSLCRG00005001283	zgc:174938 (ENSLCRG00005001280) #28	ENSLCRG00005001279 #30	lamtor2 (ENSLCRG00005001275) #31
Gilthead seabream	MODERN SPECIES	8	pbx2 (ENSSAUG00010015497)	ENSSAUG00010015496	dnase2 (ENSSAUG00010015495) #8	rgl2 (ENSSAUG00010015490) #9	PHF1 (ENSSAUG00010015488) #10	SYNGAP1 (ENSSAUG00010015441) #11	smg5 (ENSSAUG00010014205) #12	PAQR6 (ENSSAUG00010014187) #13	ntrk1 (ENSSAUG00010014186) #14	afp4 (ENSSAUG00010014184) #15	rbm8a (ENSSAUG00010014183) #17	otud7b (ENSSAUG00010014181) #18	mtmr11 (ENSSAUG00010014177) #19	SV2A (ENSSAUG00010014081) #20	bola1 (ENSSAUG00010014072)	nr2f5 (ENSSAUG00010014064) #22	ENSSAUG00010014054	ENSSAUG00010014048	rpz (ENSSAUG00010014046) ##23	rpz6 (ENSSAUG00010014043) #24	rpz5 (ENSSAUG00010014040) #26	rpz4 (ENSSAUG00010014038) #27	ENSSAUG00010014033	ENSSAUG00010014032	ENSSAUG00010013986	ENSSAUG00010013958	ENSSAUG00010013942	ENSSAUG00010013933	zgc:174938 (ENSSAUG00010013927) #28	ENSSAUG00010013924 #30	lamtor2 (ENSSAUG00010013916) #31
Perciformes	ANCESTRAL SPECIES	3	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b	ENSGT00940000155333.B	ENSGT00390000008765
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b	ENSGT00940000155333.B	ENSGT00390000008765
Pike perch	MODERN SPECIES	50	pbx2 (ENSSLUG00000011463)	ENSSLUG00000011483	dnase2 (ENSSLUG00000011488) #8	rgl2 (ENSSLUG00000011493) #9	PHF1 (ENSSLUG00000011514) #10	SYNGAP1 (ENSSLUG00000011626) #11	smg5 (ENSSLUG00000011694) #12	PAQR6 (ENSSLUG00000011725) #13	ntrk1 (ENSSLUG00000011736) #14	afp4 (ENSSLUG00000011739) #15	rbm8a (ENSSLUG00000011741) #17	otud7b (ENSSLUG00000011752) #18	mtmr11 (ENSSLUG00000011769) #19	SV2A (ENSSLUG00000011794) #20	bola1 (ENSSLUG00000011810)	nr2f5 (ENSSLUG00000011814) #22	ENSSLUG00000011820	rpz (ENSSLUG00000011824) ##23	rpz6 (ENSSLUG00000011826) #24	rpz5 (ENSSLUG00000011829) #26	rpz4 (ENSSLUG00000011830) #27	ENSSLUG00000011831	ENSSLUG00000011833 #28	ENSSLUG00000011835	ENSSLUG00000011840	ENSSLUG00000011848	ENSSLUG00000011884 #28	ENSSLUG00000011887 #28	ubqln4 (ENSSLUG00000011892) #30	lamtor2 (ENSSLUG00000011893) #31	rab25b (ENSSLUG00000011900) #32
Channel bull blenny	MODERN SPECIES	7	pbx2 (ENSCGOG00000006093)	ENSCGOG00000006086	dnase2 (ENSCGOG00000006074) #8	rgl2 (ENSCGOG00000006053) #9	PHF1 (ENSCGOG00000006000) #10	SYNGAP1 (ENSCGOG00000005965) #11	SYNGAP1 (ENSCGOG00000005962) #11	smg5 (ENSCGOG00000005537) #12	PAQR6 (ENSCGOG00000005522) #13	ntrk1 (ENSCGOG00000005507) #14	rbm8a (ENSCGOG00000005468) #17	otud7b (ENSCGOG00000005461) #18	mtmr11 (ENSCGOG00000005452) #19	SV2A (ENSCGOG00000005197) #20	bola1 (ENSCGOG00000005186)	nr2f5 (ENSCGOG00000005173) #22	ENSCGOG00000005170	rpz (ENSCGOG00000005167) ##23	rpz6 (ENSCGOG00000005164) #24	rpz5 (ENSCGOG00000005163) #26	rpz4 (ENSCGOG00000005162) #27	tmem176l.4 (ENSCGOG00000005158)	zgc:174938 (ENSCGOG00000005156) #28	ubqln4 (ENSCGOG00000005155) #30	lamtor2 (ENSCGOG00000005147) #31	rab25b (ENSCGOG00000005132) #32	rab11al (ENSCGOG00000005129) #33	ENSCGOG00000005128 #34	lmna (ENSCGOG00000004574)	gpatch4 (ENSCGOG00000004533)	ENSCGOG00000004528
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00940000170682	ENSGT00940000167095.B	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00940000155620.r #30	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b	ENSGT00940000155333.B
Lumpfish	MODERN SPECIES	17	pbx2 (ENSCLMG00005019044)	ENSCLMG00005019047	dnase2 (ENSCLMG00005019049) #8	rgl2 (ENSCLMG00005019051) #9	PHF1 (ENSCLMG00005019052) #10	SYNGAP1 (ENSCLMG00005019054) #11	smg5 (ENSCLMG00005019063) #12	ENSCLMG00005019073	PAQR6 (ENSCLMG00005019074) #13	ntrk1 (ENSCLMG00005019075) #14	rbm8a (ENSCLMG00005019076) #17	otud7b (ENSCLMG00005019077) #18	mtmr11 (ENSCLMG00005019078) #19	SV2A (ENSCLMG00005019080) #20	bola1 (ENSCLMG00005019432)	nr2f5 (ENSCLMG00005019433) #22	ENSCLMG00005019434	ENSCLMG00005019435	rpz (ENSCLMG00005019437) ##23	rpz6 (ENSCLMG00005012078) #24	rpz5 (ENSCLMG00005012079) #26	rpz4 (ENSCLMG00005012081) #27	rpz4 (ENSCLMG00005012082) #27	rpz4 (ENSCLMG00005012083) #27	tmem176l.4 (ENSCLMG00005012084)	zgc:174938 (ENSCLMG00005012085) #28	ubqln4 (ENSCLMG00005012086) #30	lamtor2 (ENSCLMG00005012087) #31	rab25b (ENSCLMG00005012088) #32	rab11al (ENSCLMG00005012089) #33	ENSCLMG00005012129 #34
Stickleback	MODERN SPECIES	19	ENSGACG00000013084	dnase2 (ENSGACG00000013086) #8	rgl2 (ENSGACG00000013112) #9	PHF1 (ENSGACG00000013128) #10	SYNGAP1 (ENSGACG00000013133) #11	smg5 (ENSGACG00000013142) #12	PAQR6 (ENSGACG00000013148) #13	ntrk1 (ENSGACG00000013150) #14	afp4 (ENSGACG00000013154) #15	rbm8a (ENSGACG00000013157) #17	otud7b (ENSGACG00000013171) #18	mtmr11 (ENSGACG00000013174) #19	ENSGACG00000013179	SV2A (ENSGACG00000013181) #20	bola1 (ENSGACG00000013188)	nr2f5 (ENSGACG00000013191) #22	ENSGACG00000013194	ENSGACG00000013202	ENSGACG00000013206	rpz (ENSGACG00000013209) ##23	rpz6 (ENSGACG00000013211) #24	ENSGACG00000013214	rpz4 (ENSGACG00000013217) #27	tmem176l.4 (ENSGACG00000013220)	zgc:174938 (ENSGACG00000013227) #28	ubqln4 (ENSGACG00000013230) #30	lamtor2 (ENSGACG00000013237) #31	rab25b (ENSGACG00000013249) #32	rab11al (ENSGACG00000013259) #33	ENSGACG00000013282 #34	lmna (ENSGACG00000013285)
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b	ENSGT00940000155333.B
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00940000181547	ENSGT00940000165143.a.b.g #23	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b
Turquoise killifish	MODERN SPECIES	1614	rgl2 (ENSNFUG00015005264) #9	ENSNFUG00015005229	ENSNFUG00015005224	SYNGAP1 (ENSNFUG00015005147) #11	SMG5 (ENSNFUG00015005066) #12	PAQR6 (ENSNFUG00015005029) #13	ENSNFUG00015005025	NTRK1 (ENSNFUG00015005005) #14	afp4 (ENSNFUG00015004984) #15	rbm8a (ENSNFUG00015004925) #17	ENSNFUG00015004912	OTUD7B (ENSNFUG00015004893) #18	MTMR11 (ENSNFUG00015004821) #19	SV2A (ENSNFUG00015004677) #20	bola1 (ENSNFUG00015004661)	nr2f5 (ENSNFUG00015004653) #22	ENSNFUG00015004646	ENSNFUG00015004643	Nfu_g_1_024366 (ENSNFUG00015004639)	ENSNFUG00015004637	RPZ (ENSNFUG00015004635) ##23	Nfu_g_1_010989 (ENSNFUG00015004634) #24	RPZ5 (ENSNFUG00015004631) #26	rpz4 (ENSNFUG00015004629) #27	ENSNFUG00015004625	ENSNFUG00015004619	ENSNFUG00015004615	LAMTOR2 (ENSNFUG00015004609) #31	RAB25 (ENSNFUG00015004604) #32	rab11al (ENSNFUG00015004595) #33	ENSNFUG00015004588 #34
Mangrove rivulus	MODERN SPECIES	193	ENSKMAG00000014786	dnase2 (ENSKMAG00000014776) #8	rgl2 (ENSKMAG00000014716) #9	ENSKMAG00000014670 #10	SYNGAP1 (ENSKMAG00000014642) #11	smg5 (ENSKMAG00000014586) #12	PAQR6 (ENSKMAG00000014542) #13	ntrk1 (ENSKMAG00000014508) #14	afp4 (ENSKMAG00000014474) #15	rbm8a (ENSKMAG00000014454) #17	otud7b (ENSKMAG00000014408) #18	mtmr11 (ENSKMAG00000014372) #19	SV2A (ENSKMAG00000014320) #20	bola1 (ENSKMAG00000014293)	ENSKMAG00000014228	nr2f5 (ENSKMAG00000014219) #22
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b
NAME_4	ANCESTRAL SPECIES	46	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00940000170682
Mummichog	MODERN SPECIES	2372	dnase2 (ENSFHEG00000014128) #8	rgl2 (ENSFHEG00000014121) #9	ENSFHEG00000014107 #10	SYNGAP1 (ENSFHEG00000014005) #11	smg5 (ENSFHEG00000013939) #12	PAQR6 (ENSFHEG00000013671) #13	ntrk1 (ENSFHEG00000013636) #14	afp4 (ENSFHEG00000013547) #15	rbm8a (ENSFHEG00000013538) #17	otud7b (ENSFHEG00000013521) #18	ENSFHEG00000013502	mtmr11 (ENSFHEG00000013488) #19	ENSFHEG00000013439	SV2A (ENSFHEG00000013433) #20	bola1 (ENSFHEG00000013395)	nr2f5 (ENSFHEG00000013382) #22
Sheepshead minnow	MODERN SPECIES	1222																nr2f5 (ENSCVAG00000022196) #22	ENSCVAG00000022216	ENSCVAG00000022225
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000170682	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b
Poecilia	ANCESTRAL SPECIES		ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b	ENSGT00940000155333.B
NAME_6	ANCESTRAL SPECIES	175					ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.a.a	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.b	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b	ENSGT00940000155333.B
Sailfin molly	MODERN SPECIES	472															bola1 (ENSPLAG00000008152)	nr2f5 (ENSPLAG00000008137) #22	ENSPLAG00000008116	rpz (ENSPLAG00000008099) ##23	rpz6 (ENSPLAG00000008092) #24	ENSPLAG00000008082	rpz5 (ENSPLAG00000008067) #26	rpz4 (ENSPLAG00000008058) #27	ENSPLAG00000008049	ENSPLAG00000008043	ENSPLAG00000008027	lamtor2 (ENSPLAG00000008013) #31	rab25b (ENSPLAG00000008004) #32	rab11al (ENSPLAG00000007986) #33	ENSPLAG00000007972 #34	ENSPLAG00000007965
Amazon molly	MODERN SPECIES	513					SYNGAP1 (ENSPFOG00000009917) #11	smg5 (ENSPFOG00000010191) #12	PAQR6 (ENSPFOG00000010354) #13	ntrk1 (ENSPFOG00000010467) #14	afp4 (ENSPFOG00000010677) #15	rbm8a (ENSPFOG00000010695) #17	otud7b (ENSPFOG00000010780) #18	mtmr11 (ENSPFOG00000010925) #19	ENSPFOG00000011054	SV2A (ENSPFOG00000011055) #20	bola1 (ENSPFOG00000020450)	nr2f5 (ENSPFOG00000011150) #22	ENSPFOG00000011194	ENSPFOG00000023669	rpz (ENSPFOG00000020451) ##23	rpz6 (ENSPFOG00000011206) #24	rpz5 (ENSPFOG00000022427) #26	rpz5 (ENSPFOG00000020452) #26	rpz4 (ENSPFOG00000020453) #27	ENSPFOG00000011217	ENSPFOG00000011230	ENSPFOG00000011232	ENSPFOG00000011272	lamtor2 (ENSPFOG00000011309) #31	rab25b (ENSPFOG00000011310) #32	rab11al (ENSPFOG00000011316) #33	ENSPFOG00000011366 #34
Guppy	MODERN SPECIES	446	pbx2 (ENSPREG00000018201)	ENSPREG00000018192	dnase2 (ENSPREG00000018170) #8	rgl2 (ENSPREG00000018131) #9	ENSPREG00000018097 #10	SYNGAP1 (ENSPREG00000017857) #11	smg5 (ENSPREG00000017713) #12	PAQR6 (ENSPREG00000017648) #13	ntrk1 (ENSPREG00000017606) #14	afp4 (ENSPREG00000017587) #15	rbm8a (ENSPREG00000017572) #17	otud7b (ENSPREG00000017548) #18	mtmr11 (ENSPREG00000017533) #19	SV2A (ENSPREG00000017505) #20	bola1 (ENSPREG00000017489)	nr2f5 (ENSPREG00000017478) #22	ENSPREG00000017462	rpz (ENSPREG00000017451) ##23	rpz6 (ENSPREG00000017443) #24	rpz5 (ENSPREG00000017425) #26	rpz4 (ENSPREG00000017417) #27	ENSPREG00000017402	ENSPREG00000017387	ENSPREG00000017369	lamtor2 (ENSPREG00000017357) #31	rab25b (ENSPREG00000017337) #32	rab11al (ENSPREG00000017324) #33	ENSPREG00000017309 #34	lmna (ENSPREG00000017213)	ENSPREG00000017085	ENSPREG00000017066
Platyfish	MODERN SPECIES	17	dnase2 (ENSXMAG00000013560) #8	rgl2 (ENSXMAG00000013549) #9	ENSXMAG00000021298	ENSXMAG00000013539 #10	ENSXMAG00000029645	SYNGAP1 (ENSXMAG00000013527) #11	smg5 (ENSXMAG00000013499) #12	PAQR6 (ENSXMAG00000013484) #13	ntrk1 (ENSXMAG00000013468) #14	afp4 (ENSXMAG00000013467) #15	rbm8a (ENSXMAG00000013463) #17	otud7b (ENSXMAG00000013458) #18	mtmr11 (ENSXMAG00000013453) #19	SV2A (ENSXMAG00000013444) #20	bola1 (ENSXMAG00000019538)	nr2f5 (ENSXMAG00000013436) #22	ENSXMAG00000013435	rpz (ENSXMAG00000019536) ##23	rpz6 (ENSXMAG00000025231) #24	rpz5 (ENSXMAG00000020380) #26	rpz4 (ENSXMAG00000023516) #27	ENSXMAG00000020842	ENSXMAG00000013432	ENSXMAG00000013429	lamtor2 (ENSXMAG00000028948) #31	rab25b (ENSXMAG00000028745) #32	rab11al (ENSXMAG00000027071) #33	ENSXMAG00000013412 #34	ENSXMAG00000028413	lmna (ENSXMAG00000013395)	ENSXMAG00000013394
Oryzias	ANCESTRAL SPECIES	2	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00510000048783.a	ENSGT00940000165143.a.b.g.a.a #23	ENSGT00390000008158.b.b.a.b #24	ENSGT00940000165143.a.b.g.a.b #23	ENSGT00390000008158.b.b.a.a.f.b #27	ENSGT00940000165143.a.b.g.b #23	ENSGT00390000008158.b.b.a.a.f.a #27	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a.e #27	ENSGT00940000163195.A.c	ENSGT01090000260131.d	ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000161037
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00940000170682	ENSGT00510000048783.a	ENSGT00940000165143.a.b.g.a.a #23	ENSGT00390000008158.b.b.a.b #24	ENSGT00940000165143.a.b.g.a.b #23	ENSGT00390000008158.b.b.a.a.f.b #27	ENSGT00940000165143.a.b.g.b #23	ENSGT00390000008158.b.b.a.a.f.a #27	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a.e #27	ENSGT00940000163195.A.c	ENSGT01090000260131.d	ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000161037
Javanese ricefish	MODERN SPECIES	7	ENSOJAG00000005348	pbx2 (ENSOJAG00000005367)	dnase2 (ENSOJAG00000005393) #8	rgl2 (ENSOJAG00000005407) #9	PHF1 (ENSOJAG00000005536) #10	SYNGAP1 (ENSOJAG00000005637) #11	smg5 (ENSOJAG00000005804) #12	PAQR6 (ENSOJAG00000006479) #13	ntrk1 (ENSOJAG00000006505) #14	afp4 (ENSOJAG00000006529) #15	rbm8a (ENSOJAG00000006557) #17	otud7b (ENSOJAG00000006586) #18	mtmr11 (ENSOJAG00000006618) #19	SV2A (ENSOJAG00000006753) #20	bola1 (ENSOJAG00000006881)	nr2f5 (ENSOJAG00000006892) #22	ENSOJAG00000006929	ENSOJAG00000006970 #23	rpz6 (ENSOJAG00000006991) #24	ENSOJAG00000006999 #23	rpz4 (ENSOJAG00000007006) #27	ENSOJAG00000007015 #23	rpz4 (ENSOJAG00000007029) #27	rpz5 (ENSOJAG00000007033) #26	rpz4 (ENSOJAG00000007049) #27	ENSOJAG00000007066
Indian medaka	MODERN SPECIES	33	ENSOMEG00000020764	dnase2 (ENSOMEG00000020788) #8	rgl2 (ENSOMEG00000020962) #9	ENSOMEG00000021059 #10	ENSOMEG00000021082	SYNGAP1 (ENSOMEG00000021229) #11	smg5 (ENSOMEG00000021330) #12	PAQR6 (ENSOMEG00000021407) #13	ntrk1 (ENSOMEG00000021500) #14	rbm8a (ENSOMEG00000021533) #17	ENSOMEG00000021547 #15	otud7b (ENSOMEG00000021584) #18	mtmr11 (ENSOMEG00000021623) #19	SV2A (ENSOMEG00000021649) #20	bola1 (ENSOMEG00000021673)	nr2f5 (ENSOMEG00000021700) #22	ENSOMEG00000021729	rpz2 (ENSOMEG00000021748) #23	rpz6 (ENSOMEG00000021778) #24	rpz4 (ENSOMEG00000021789) #27	ENSOMEG00000021805 #23	ENSOMEG00000021812	ENSOMEG00000021821	rpz4 (ENSOMEG00000021837) #27	rpz5 (ENSOMEG00000021850) #26	rpz4 (ENSOMEG00000021860) #27	ENSOMEG00000021868	col28a1b (ENSOMEG00000000580)	ENSOMEG00000021991	ENSOMEG00000022039	septin7b (ENSOMEG00000022069)
Oryzias_a	ANCESTRAL SPECIES	37	ENSGT00940000175842	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00510000048783.a	ENSGT00940000165143.a.b.g.a.a.a #23	ENSGT00390000008158.b.b.a.b #24	ENSGT00940000165143.a.b.g.a.b #23	ENSGT00390000008158.b.b.a.a.f.b #27	ENSGT00940000165143.a.b.g.b #23	ENSGT00390000008158.b.b.a.a.f.a #27	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a.e #27	ENSGT00390000009313	ENSGT00950000183165.b.a.e.a	ENSGT01090000260131.d	ENSGT00390000001883	ENSGT00940000154222.d.a
Japanese Medaka HdrR	MODERN SPECIES	7	ENSORLG00000022607	dnase2 (ENSORLG00000016180) #8	rgl2 (ENSORLG00000016196) #9	ENSORLG00000016201 #10	SYNGAP1 (ENSORLG00000016229) #11	smg5 (ENSORLG00000016239) #12	PAQR6 (ENSORLG00000016244) #13	ntrk1 (ENSORLG00000023848) #14	afp4 (ENSORLG00000016252) #15	rbm8a (ENSORLG00000016263) #17	otud7b (ENSORLG00000016275) #18	mtmr11 (ENSORLG00000016284) #19	ENSORLG00000030365	SV2A (ENSORLG00000016295) #20	bola1 (ENSORLG00000016299)	nr2f5 (ENSORLG00000024314) #22	ENSORLG00000016323	ENSORLG00000028778 #23	ENSORLG00000029395 #23	ENSORLG00000026123	rpz6 (ENSORLG00000025794) #24	ENSORLG00000026172 #23	ENSORLG00000026443 #27	ENSORLG00000024164	ENSORLG00000023075 #23	ENSORLG00000016330 #27	rpz5 (ENSORLG00000016332) #26	rpz4 (ENSORLG00000016333) #27	ENSORLG00000016336	ENSORLG00000016348	ENSORLG00000023131
Chinese medaka	MODERN SPECIES	1244	TAP1 (ENSOSIG00000013202)	ENSOSIG00000013200	pbx2 (ENSOSIG00000013197)	ENSOSIG00000013193	dnase2 (ENSOSIG00000013192) #8	rgl2 (ENSOSIG00000013189) #9	ENSOSIG00000013187 #10	SYNGAP1 (ENSOSIG00000013041) #11	smg5 (ENSOSIG00000013022) #12	PAQR6 (ENSOSIG00000013020) #13	afp4 (ENSOSIG00000013018) #15	otud7b (ENSOSIG00000013015) #18	mtmr11 (ENSOSIG00000013010) #19	SV2A (ENSOSIG00000012528) #20	bola1 (ENSOSIG00000012510)	nr2f5 (ENSOSIG00000012505) #22	ENSOSIG00000012500	ENSOSIG00000012497 #23	rpz6 (ENSOSIG00000012493) #24	ENSOSIG00000012491 #23	rpz4 (ENSOSIG00000012490) #27	ENSOSIG00000012487 #23	rpz4 (ENSOSIG00000012485) #27	rpz5 (ENSOSIG00000012482) #26	rpz4 (ENSOSIG00000012480) #27	ENSOSIG00000012479	ENSOSIG00000012447	ENSOSIG00000012445	septin7b (ENSOSIG00000012438)	ENSOSIG00000012424	ENSOSIG00000012420
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00940000170682	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a #28	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00940000170682	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00510000051675.h.b.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.c.a	ENSGT00510000051675.h.a	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a #28	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00940000170682	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00940000164178.s.b	ENSGT00510000051675.g.d	ENSGT00390000010118.c.a.a #28	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32	ENSGT00940000165149 #33	ENSGT00940000166523 #34	ENSGT00940000157244.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00940000170682	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00940000164178.s.b	ENSGT00940000164178.s.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.c.a	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a #28	ENSGT00390000006100 #31
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00940000164178.s.b	ENSGT00940000164178.s.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.c.a	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a #28	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32
Haplochromini_A	ANCESTRAL SPECIES	27	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00940000164178.s.b	ENSGT00940000164178.s.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.c.a	ENSGT00510000051675.g.c.b.b	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a #28	ENSGT00390000006100 #31	ENSGT00940000158230.b.a #32
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00940000170682	ENSGT00940000167095.B	ENSGT00510000049239.b.b	ENSGT00940000165143.a.a ##23	ENSGT00390000008158.b.b.a.b #24	ENSGT00390000008158.b.a #26	ENSGT00390000008158.b.b.a.a #27	ENSGT00940000164178.s.b	ENSGT00940000164178.s.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.c.a	ENSGT00510000051675.g.c.b.b	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a #28	ENSGT00390000006100 #31
Eastern happy	MODERN SPECIES	2	pbx2 (ENSACLG00000008881)	ENSACLG00000008899	dnase2 (ENSACLG00000008911) #8	rgl2 (ENSACLG00000008918) #9	PHF1 (ENSACLG00000008933) #10	SYNGAP1 (ENSACLG00000008961) #11	smg5 (ENSACLG00000009311) #12	PAQR6 (ENSACLG00000009375) #13	ntrk1 (ENSACLG00000009587) #14	rbm8a (ENSACLG00000009627) #17	otud7b (ENSACLG00000009638) #18	mtmr11 (ENSACLG00000009660) #19	ENSACLG00000009694	SV2A (ENSACLG00000009697) #20	bola1 (ENSACLG00000009710)	nr2f5 (ENSACLG00000009719) #22	ENSACLG00000009726	ENSACLG00000009737	rpz (ENSACLG00000009741) ##23	rpz6 (ENSACLG00000009746) #24	rpz5 (ENSACLG00000009751) #26	rpz4 (ENSACLG00000009754) #27	ENSACLG00000009764	ENSACLG00000010177	ENSACLG00000010200	ENSACLG00000010211	ENSACLG00000010218	ENSACLG00000010229	zgc:174938 (ENSACLG00000010243) #28	lamtor2 (ENSACLG00000010245) #31	rab25b (ENSACLG00000010251) #32
Zebra mbuna	MODERN SPECIES	1093	ATP2C1 (ENSMZEG00005016819)	PIK3R4 (ENSMZEG00005016803)	ENSMZEG00005016796	ENSMZEG00005016792	COL6A6 (ENSMZEG00005016769)	ENSMZEG00005016569	smg5 (ENSMZEG00005016543) #12	PAQR6 (ENSMZEG00005016526) #13	ntrk1 (ENSMZEG00005016495) #14	rbm8a (ENSMZEG00005016453) #17	otud7b (ENSMZEG00005016426) #18	mtmr11 (ENSMZEG00005016405) #19	ENSMZEG00005016395	SV2A (ENSMZEG00005016369) #20	bola1 (ENSMZEG00005016360)	nr2f5 (ENSMZEG00005016355) #22	ENSMZEG00005016349	rpz (ENSMZEG00005016345) ##23	rpz6 (ENSMZEG00005016342) #24	rpz5 (ENSMZEG00005016335) #26	rpz4 (ENSMZEG00005016332) #27	ENSMZEG00005016322	nr1d2a (ENSMZEG00005016315)	ube2e1 (ENSMZEG00005016310)	ube2e2 (ENSMZEG00005016306)	ENSMZEG00005016299	ZNF385D (ENSMZEG00005016295)	rab5ab (ENSMZEG00005016286)	efhb (ENSMZEG00005016283)	si:dkey-82o10.4 (ENSMZEG00005016280)	ENSMZEG00005016275
P. nyererei	MODERN SPECIES	433	pbx2 (ENSPNYG00000012906)	ENSPNYG00000012935	dnase2 (ENSPNYG00000012955) #8	rgl2 (ENSPNYG00000012979) #9	PHF1 (ENSPNYG00000013037) #10	SYNGAP1 (ENSPNYG00000013123) #11	smg5 (ENSPNYG00000013397) #12	PAQR6 (ENSPNYG00000013500) #13	ntrk1 (ENSPNYG00000013517) #14	rbm8a (ENSPNYG00000013564) #17	otud7b (ENSPNYG00000013585) #18	mtmr11 (ENSPNYG00000013609) #19	ENSPNYG00000013644	SV2A (ENSPNYG00000013663) #20	bola1 (ENSPNYG00000013704)	nr2f5 (ENSPNYG00000013716) #22	ENSPNYG00000013734	ENSPNYG00000013752	rpz (ENSPNYG00000013763) ##23	rpz6 (ENSPNYG00000013769) #24	rpz5 (ENSPNYG00000013781) #26	rpz4 (ENSPNYG00000013784) #27	ENSPNYG00000013791	ENSPNYG00000013812
Burton s mouthbrooder	MODERN SPECIES	327	pbx2 (ENSHBUG00000008278)	ENSHBUG00000001065	dnase2 (ENSHBUG00000008304) #8	rgl2 (ENSHBUG00000008416) #9	ENSHBUG00000008432 #10	SYNGAP1 (ENSHBUG00000008524) #11	smg5 (ENSHBUG00000008654) #12	PAQR6 (ENSHBUG00000000217) #13	ntrk1 (ENSHBUG00000008795) #14	rbm8a (ENSHBUG00000008827) #17	otud7b (ENSHBUG00000008841) #18	mtmr11 (ENSHBUG00000008921) #19	ENSHBUG00000008944	SV2A (ENSHBUG00000009012) #20	bola1 (ENSHBUG00000009032)	nr2f5 (ENSHBUG00000009044) #22	ENSHBUG00000009063	ENSHBUG00000009075	rpz (ENSHBUG00000009083) ##23	rpz6 (ENSHBUG00000009089) #24	rpz5 (ENSHBUG00000009100) #26	rpz4 (ENSHBUG00000009111) #27	ENSHBUG00000009120	ENSHBUG00000000231	ENSHBUG00000009212	ENSHBUG00000009223	ENSHBUG00000009235	ENSHBUG00000009248	ENSHBUG00000009259	zgc:174938 (ENSHBUG00000009267) #28	lamtor2 (ENSHBUG00000009286) #31
Nile tilapia	MODERN SPECIES	2	her7 (ENSONIG00000032325)	pbx2 (ENSONIG00000008651)	dnase2 (ENSONIG00000008649) #8	rgl2 (ENSONIG00000008644) #9	ENSONIG00000033348 #10	SYNGAP1 (ENSONIG00000008635) #11	smg5 (ENSONIG00000008632) #12	PAQR6 (ENSONIG00000008626) #13	ntrk1 (ENSONIG00000008622) #14	rbm8a (ENSONIG00000008608) #17	otud7b (ENSONIG00000008603) #18	mtmr11 (ENSONIG00000008602) #19	SV2A (ENSONIG00000008598) #20	ENSONIG00000033471	bola1 (ENSONIG00000033709)	nr2f5 (ENSONIG00000029562) #22	ENSONIG00000008593	ENSONIG00000022659	rpz (ENSONIG00000021082) ##23	rpz6 (ENSONIG00000008592) #24	rpz4 (ENSONIG00000037493) #27	ENSONIG00000008588	ENSONIG00000028945	ENSONIG00000008585	ENSONIG00000030458	ENSONIG00000034333	ENSONIG00000031928	ENSONIG00000028408	ENSONIG00000038383	ENSONIG00000034714	zgc:171704 (ENSONIG00000002152)
Midas cichlid	MODERN SPECIES	872										rbm8a (ENSACIG00000017678) #17	otud7b (ENSACIG00000017648) #18	ENSACIG00000017642	mtmr11 (ENSACIG00000017613) #19	SV2A (ENSACIG00000017594) #20	bola1 (ENSACIG00000017566)	nr2f5 (ENSACIG00000017556) #22	ENSACIG00000017542	rpz (ENSACIG00000017536) ##23	rpz6 (ENSACIG00000017530) #24	rpz5 (ENSACIG00000017523) #26	ENSACIG00000017516	rpz4 (ENSACIG00000017512) #27	ENSACIG00000017497	ENSACIG00000017475	ENSACIG00000017450	zgc:174938 (ENSACIG00000017433) #28	lamtor2 (ENSACIG00000017426) #31	rab25b (ENSACIG00000017414) #32	rab11al (ENSACIG00000017403) #33	ENSACIG00000017394 #34	lmna (ENSACIG00000017374)
Pomacentridae	ANCESTRAL SPECIES	25	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a
Pomacentridae_A	ANCESTRAL SPECIES	16	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000167095.B
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00940000166061.b	ENSGT00390000002634.a.e #8	ENSGT00940000167370 #9	ENSGT00950000183180.a.b #10	ENSGT00940000158438.n #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00940000159412 #14	ENSGT00760000119652 #15	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165	ENSGT00940000165753 #22	ENSGT00510000049239.b.b	ENSGT00940000167095.B	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a.k	ENSGT00940000155779.a.a.l	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030
Clown anemonefish	MODERN SPECIES	1796							ntrk1 (ENSAOCG00000023857) #14	afp4 (ENSAOCG00000023870) #15	ENSAOCG00000023879	rbm8a (ENSAOCG00000023887) #17	otud7b (ENSAOCG00000023897) #18	mtmr11 (ENSAOCG00000023938) #19	ENSAOCG00000023946	SV2A (ENSAOCG00000023959) #20	bola1 (ENSAOCG00000023969)	nr2f5 (ENSAOCG00000023977) #22
Orange clownfish	MODERN SPECIES	21	ENSAPEG00000023227	dnase2 (ENSAPEG00000023208) #8	rgl2 (ENSAPEG00000023146) #9	PHF1 (ENSAPEG00000023049) #10	SYNGAP1 (ENSAPEG00000023032) #11	smg5 (ENSAPEG00000022949) #12	PAQR6 (ENSAPEG00000022918) #13	ntrk1 (ENSAPEG00000022877) #14	afp4 (ENSAPEG00000022859) #15	rbm8a (ENSAPEG00000022847) #17	otud7b (ENSAPEG00000022828) #18	mtmr11 (ENSAPEG00000022797) #19	ENSAPEG00000022792	SV2A (ENSAPEG00000022757) #20	bola1 (ENSAPEG00000022655)	nr2f5 (ENSAPEG00000022639) #22	ENSAPEG00000022616	ENSAPEG00000022594	ENSAPEG00000022575	ENSAPEG00000022563	ENSAPEG00000022546	dhx16 (ENSAPEG00000022508)	rnf183 (ENSAPEG00000022495)	mgat1a (ENSAPEG00000022450)	sh3bp5la (ENSAPEG00000022428)	ENSAPEG00000022418	GABBR1 (ENSAPEG00000022372)	tnfb (ENSAPEG00000022358)	ENSAPEG00000022349	ENSAPEG00000022341	ENSAPEG00000022323
Spiny chromis	MODERN SPECIES	86	ENSAPOG00000010047	sel1l (ENSAPOG00000009984)	ENSAPOG00000009952	fkbp6 (ENSAPOG00000009934)	ENSAPOG00000009908	ENSAPOG00000009882	CLEC18A (ENSAPOG00000009846)	ntrk1 (ENSAPOG00000009792) #14	afp4 (ENSAPOG00000009768) #15	rbm8a (ENSAPOG00000009727) #17	otud7b (ENSAPOG00000009679) #18	mtmr11 (ENSAPOG00000009570) #19	ENSAPOG00000009490	SV2A (ENSAPOG00000009474) #20	bola1 (ENSAPOG00000000262)	nr2f5 (ENSAPOG00000009372) #22	ENSAPOG00000009350	ENSAPOG00000009331	ENSAPOG00000009275
Bicolor damselfish	MODERN SPECIES	458							ntrk1 (ENSSPAG00000012074) #14	ENSSPAG00000012164	afp4 (ENSSPAG00000012172) #15	rbm8a (ENSSPAG00000012181) #17	otud7b (ENSSPAG00000012196) #18	mtmr11 (ENSSPAG00000012227) #19	ENSSPAG00000012272	SV2A (ENSSPAG00000012284) #20	bola1 (ENSSPAG00000012313)	nr2f5 (ENSSPAG00000012324) #22	ENSSPAG00000012342	ENSSPAG00000012362	ppt2a.2 (ENSSPAG00000012385)	dhx16 (ENSSPAG00000012416)	rnf183 (ENSSPAG00000012532)	mgat1a (ENSSPAG00000012552)	sh3bp5la (ENSSPAG00000012567)	ENSSPAG00000012571	ENSSPAG00000012594	tnfb (ENSSPAG00000012619)	ENSSPAG00000012635	ENSSPAG00000012646	glrx3 (ENSSPAG00000012656)	bag6 (ENSSPAG00000012678)	tspan13a (ENSSPAG00000012698)