Cyprininae	ANCESTRAL SPECIES	84	ENSGT01100000263583.c ##8	ENSGT00940000159697.i.a ##9	ENSGT01010000222294.c.b.b.a.a.b.a.b.a ##10	ENSGT00390000002634.a.e	ENSGT00940000167370.d #11	ENSGT00950000183180.a.b.g.b #12	ENSGT00940000158438.n.a #13	ENSGT00940000154566.a #14	ENSGT00940000160567.q #15	ENSGT00940000159412.a #16	ENSGT00760000119652.h.b #17	ENSGT00730000111185.eb.a #18	ENSGT00940000159172.c #19	ENSGT00940000160276.e #20	ENSGT00950000182940.b.a.b.a.a.b #21	ENSGT00940000165753.e #22	ENSGT00940000165143.a.b.d #23	ENSGT00940000165143.a.a.e.a.b #24	ENSGT00390000008158.b.b.a.b.c.a #25	ENSGT00390000008158.b.b.a.b.d ##25	ENSGT00390000008158.b.a.e #28	ENSGT00390000008158.b.b.a.a.a #29	ENSGT00390000010118.c.a.a.a.a #31	ENSGT00940000163727.r #32	ENSGT00510000051675.e.b.b #33	ENSGT00940000155620.r.c #34	ENSGT00390000006100.p #35	ENSGT00940000158230.b.a.a.b #36	ENSGT00940000158230.b.a.b ##36	ENSGT00940000165149.e.b ##37	ENSGT00940000166523.e
Cyprininae_a	ANCESTRAL SPECIES	78	ENSGT01100000263583.d #8	ENSGT01070000253873	ENSGT00940000159697.i.b #9	ENSGT01010000222294.c.b.b.a.a.b.a.b.b #10	ENSGT00940000167370.d #11	ENSGT00950000183180.a.b.g.b #12	ENSGT00940000158438.n.a #13	ENSGT00940000154566.a #14	ENSGT00940000160567.q #15	ENSGT00940000159412.a #16	ENSGT00760000119652.h.b #17	ENSGT00730000111185.eb.a #18	ENSGT00940000159172.c #19	ENSGT00940000160276.e #20	ENSGT00950000182940.b.a.b.a.a.b #21	ENSGT00940000165753.e #22	ENSGT00940000165143.a.b.d #23	ENSGT00940000165143.a.a.e.a.b #24	ENSGT00390000008158.b.b.a.b.c.a #25	ENSGT00390000008158.b.b.a.b.d ##25	ENSGT00390000008158.b.a.e #28	ENSGT00390000008158.b.b.a.a.a #29	ENSGT00390000010118.c.a.a.a.a #31	ENSGT00940000163727.r #32	ENSGT00510000051675.e.b.b #33	ENSGT00940000155620.r.c #34	ENSGT00390000006100.p #35	ENSGT00940000158230.b.a.a.b #36	ENSGT00940000158230.b.a.b ##36	ENSGT00940000165149.e.b ##37	ENSGT00940000166523.e
Common carp reference	MODERN SPECIES	2	ENSCCRG00000077158 #7	fxyd3 (ENSCCRG00000064664) #8	hpn (ENSCCRG00000042594) #9	ENSCCRG00000042654 #10	rgl2 (ENSCCRG00000042662) #11	ENSCCRG00000042672 #12	ENSCCRG00000031543 #13	smg5 (ENSCCRG00000002969) #14	ENSCCRG00000003270 #15	ntrk1 (ENSCCRG00000003301) #16	ENSCCRG00000063671 #17	rbm8a (ENSCCRG00000068126) #18	otud7b (ENSCCRG00000062979) #19	mtmr11 (ENSCCRG00000005000) #20	SV2A (ENSCCRG00000003867) #21	nr2f5 (ENSCCRG00000059545) #22	rpz2 (ENSCCRG00000073194) #23	rpz (ENSCCRG00000057350) #24	ENSCCRG00000078456 #25	rpz (ENSCCRG00000070641) #26	ENSCCRG00000060201 #27	rpz5 (ENSCCRG00000064692) #28	rpz4 (ENSCCRG00000003698) #29	ENSCCRG00000076342 #30	ENSCCRG00000003694 #31	ENSCCRG00000003662 #32	ENSCCRG00000078437 #33	ubqln4 (ENSCCRG00000050833) #34	lamtor2 (ENSCCRG00000003428) #35	rab25b (ENSCCRG00000003390) #36	rab11al (ENSCCRG00000058461) #37
Golden-line barbel	MODERN SPECIES	149	ENSSGRG00000002289 ##10	dnase2 (ENSSGRG00000002288)	rgl2 (ENSSGRG00000002287) #11	PHF1 (ENSSGRG00000002286) ##12	SYNGAP1 (ENSSGRG00000002283) #13	smg5 (ENSSGRG00000001733) #14	PAQR6 (ENSSGRG00000001712) #15	ntrk1 (ENSSGRG00000001708) #16	ENSSGRG00000001706 #17	ENSSGRG00000001702 #17	rbm8a (ENSSGRG00000001665) #18	otud7b (ENSSGRG00000001364) #19	mtmr11 (ENSSGRG00000001328) #20	SV2A (ENSSGRG00000001311) #21	ENSSGRG00000001302	nr2f5 (ENSSGRG00000001240) #22	rpz2 (ENSSGRG00000001223) ##23	ENSSGRG00000001214 #25	ENSSGRG00000001207 ##25	rpz5 (ENSSGRG00000001195) #28	rpz4 (ENSSGRG00000001186) #29	ENSSGRG00000001174 #31	ENSSGRG00000001156 #32	ubqln4 (ENSSGRG00000053311) #34	lamtor2 (ENSSGRG00000053310) #35	rab25b (ENSSGRG00000053309) ##36	rab11al (ENSSGRG00000053308) ##37	ENSSGRG00000053307	THSD7A (ENSSGRG00000053303)	ENSSGRG00000053297	ENSSGRG00000053290
Goldfish	MODERN SPECIES	35	fxyd3 (ENSCARG00000049352) #8	hpn (ENSCARG00000049421) #9	ENSCARG00000049595 #10	rgl2 (ENSCARG00000049643) #11	PHF1 (ENSCARG00000049711) #12	SYNGAP1 (ENSCARG00000050108) #13	smg5 (ENSCARG00000050312) #14	PAQR6 (ENSCARG00000050439) #15	ntrk1 (ENSCARG00000050467) #16	ENSCARG00000050539 #17	ENSCARG00000050558 #17	rbm8a (ENSCARG00000050575) #18	otud7b (ENSCARG00000050632) #19	mtmr11 (ENSCARG00000050674) #20	SV2A (ENSCARG00000050747) #21	nr2f5 (ENSCARG00000050971) #22	rpz (ENSCARG00000051041) #24	ENSCARG00000051047 #25	ENSCARG00000051078 #27	rpz5 (ENSCARG00000051086) #28	rpz4 (ENSCARG00000051098) #29	ENSCARG00000051113 #31	ENSCARG00000051145 ##33	tmem176l.2 (ENSCARG00000051174) ##33	ubqln4 (ENSCARG00000051231) #34	lamtor2 (ENSCARG00000051675) #35	rab25b (ENSCARG00000051711) #36	rab11al (ENSCARG00000051789) ##37	ENSCARG00000051816	ENSCARG00000051823	THSD7A (ENSCARG00000051904)