Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	84	ENSGT01100000263583.c ##7	ENSGT00940000159697.i.a ##8	ENSGT01010000222294.c.b.b.a.a.b.a.b.a ##9	ENSGT00390000002634.a.e	ENSGT00940000167370.d #10	ENSGT00950000183180.a.b.g.b #11	ENSGT00940000158438.n.a #12	ENSGT00940000154566.a #13	ENSGT00940000160567.q #14	ENSGT00940000159412.a #15	ENSGT00760000119652.h.b #17	ENSGT00730000111185.eb.a #18	ENSGT00940000159172.c #19	ENSGT00940000160276.e #20	ENSGT00950000182940.b.a.b.a.a.b #21	ENSGT00940000165753.e #22	ENSGT00940000165143.a.b.d ##23	ENSGT00940000165143.a.a.e.a.b #23	ENSGT00390000008158.b.b.a.b.c.a #24	ENSGT00390000008158.b.b.a.b.d ##27	ENSGT00390000008158.b.a.e #26	ENSGT00390000008158.b.b.a.a.a #27	ENSGT00390000010118.c.a.a.a.a #28	ENSGT00940000163727.r	ENSGT00510000051675.e.b.b ##30	ENSGT00940000155620.r.c #31	ENSGT00390000006100.p #32	ENSGT00940000158230.b.a.a.b #33	ENSGT00940000158230.b.a.b ##33	ENSGT00940000165149.e.b #34	ENSGT00940000166523.e #35
Goldfish	MODERN SPECIES	35	fxyd3 (ENSCARG00000049352) #7	hpn (ENSCARG00000049421) #8	ENSCARG00000049595 #9	rgl2 (ENSCARG00000049643) #10	PHF1 (ENSCARG00000049711) #11	SYNGAP1 (ENSCARG00000050108) #12	smg5 (ENSCARG00000050312) #13	PAQR6 (ENSCARG00000050439) #14	ntrk1 (ENSCARG00000050467) #15	ENSCARG00000050539 #16	ENSCARG00000050558 #17	rbm8a (ENSCARG00000050575) #18	otud7b (ENSCARG00000050632) #19	mtmr11 (ENSCARG00000050674) #20	SV2A (ENSCARG00000050747) #21	nr2f5 (ENSCARG00000050971) #22	rpz (ENSCARG00000051041) #23	ENSCARG00000051047 #24	ENSCARG00000051078 #25	rpz5 (ENSCARG00000051086) #26	rpz4 (ENSCARG00000051098) #27	ENSCARG00000051113 #28	ENSCARG00000051145 #29	tmem176l.2 (ENSCARG00000051174) #30	ubqln4 (ENSCARG00000051231) #31	lamtor2 (ENSCARG00000051675) #32	rab25b (ENSCARG00000051711) #33	rab11al (ENSCARG00000051789) #34	ENSCARG00000051816 #35	ENSCARG00000051823 #36	THSD7A (ENSCARG00000051904) #37
Cyprininae_a	ANCESTRAL SPECIES	78	ENSGT01100000263583.d #7	ENSGT01070000253873	ENSGT00940000159697.i.b #8	ENSGT01010000222294.c.b.b.a.a.b.a.b.b #9	ENSGT00940000167370.d #10	ENSGT00950000183180.a.b.g.b #11	ENSGT00940000158438.n.a #12	ENSGT00940000154566.a #13	ENSGT00940000160567.q #14	ENSGT00940000159412.a #15	ENSGT00760000119652.h.b #17	ENSGT00730000111185.eb.a #18	ENSGT00940000159172.c #19	ENSGT00940000160276.e #20	ENSGT00950000182940.b.a.b.a.a.b #21	ENSGT00940000165753.e #22	ENSGT00940000165143.a.b.d ##23	ENSGT00940000165143.a.a.e.a.b #23	ENSGT00390000008158.b.b.a.b.c.a #24	ENSGT00390000008158.b.b.a.b.d ##27	ENSGT00390000008158.b.a.e #26	ENSGT00390000008158.b.b.a.a.a #27	ENSGT00390000010118.c.a.a.a.a #28	ENSGT00940000163727.r	ENSGT00510000051675.e.b.b ##30	ENSGT00940000155620.r.c #31	ENSGT00390000006100.p #32	ENSGT00940000158230.b.a.a.b #33	ENSGT00940000158230.b.a.b ##33	ENSGT00940000165149.e.b #34	ENSGT00940000166523.e #35
Common carp reference	MODERN SPECIES	2	ENSCCRG00000077158	fxyd3 (ENSCCRG00000064664) #7	hpn (ENSCCRG00000042594) #8	ENSCCRG00000042654 #9	rgl2 (ENSCCRG00000042662) #10	ENSCCRG00000042672 #11	ENSCCRG00000031543 #12	smg5 (ENSCCRG00000002969) #13	ENSCCRG00000003270 #14	ntrk1 (ENSCCRG00000003301) #15	ENSCCRG00000063671 #17	rbm8a (ENSCCRG00000068126) #18	otud7b (ENSCCRG00000062979) #19	mtmr11 (ENSCCRG00000005000) #20	SV2A (ENSCCRG00000003867) #21	nr2f5 (ENSCCRG00000059545) #22	rpz2 (ENSCCRG00000073194) ##23	rpz (ENSCCRG00000057350) #23	ENSCCRG00000078456 #24	rpz (ENSCCRG00000070641) ##23	ENSCCRG00000060201 #25	rpz5 (ENSCCRG00000064692) #26	rpz4 (ENSCCRG00000003698) #27	ENSCCRG00000076342	ENSCCRG00000003694 #28	ENSCCRG00000003662	ENSCCRG00000078437 ##30	ubqln4 (ENSCCRG00000050833) #31	lamtor2 (ENSCCRG00000003428) #32	rab25b (ENSCCRG00000003390) #33	rab11al (ENSCCRG00000058461) ##34
Golden-line barbel	MODERN SPECIES	149	ENSSGRG00000002289 ##9	dnase2 (ENSSGRG00000002288)	rgl2 (ENSSGRG00000002287) #10	PHF1 (ENSSGRG00000002286) ##11	SYNGAP1 (ENSSGRG00000002283) #12	smg5 (ENSSGRG00000001733) #13	PAQR6 (ENSSGRG00000001712) #14	ntrk1 (ENSSGRG00000001708) #15	ENSSGRG00000001706 #17	ENSSGRG00000001702 #17	rbm8a (ENSSGRG00000001665) #18	otud7b (ENSSGRG00000001364) #19	mtmr11 (ENSSGRG00000001328) #20	SV2A (ENSSGRG00000001311) #21	ENSSGRG00000001302	nr2f5 (ENSSGRG00000001240) #22	rpz2 (ENSSGRG00000001223) ##23	ENSSGRG00000001214 #24	ENSSGRG00000001207 ##27	rpz5 (ENSSGRG00000001195) #26	rpz4 (ENSSGRG00000001186) #27	ENSSGRG00000001174 #28	ENSSGRG00000001156	ubqln4 (ENSSGRG00000053311) #31	lamtor2 (ENSSGRG00000053310) #32	rab25b (ENSSGRG00000053309) ##33	rab11al (ENSSGRG00000053308) #34	ENSSGRG00000053307 #35	THSD7A (ENSSGRG00000053303) #37	ENSSGRG00000053297	ENSSGRG00000053290
Cyprininae	ANCESTRAL SPECIES	83	ENSGT00940000160272.d	ENSGT00940000167370.c ##10	ENSGT00950000183180.a.b.g.a ##11	ENSGT00940000158438.n.b ##12	ENSGT00940000154566.b ##13	ENSGT00940000160567.r ##14	ENSGT00940000159412.b ##15	ENSGT00760000119652.h.a ##17	ENSGT00760000119652.g ##17	ENSGT00730000111185.eb.b ##18	ENSGT00940000159172.d ##19	ENSGT00940000160276.f ##20	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a.a ##21	ENSGT00510000048165	ENSGT00940000165753.f ##22	ENSGT00940000165143.a.b.c ##23	ENSGT00940000165143.a.a.e.a.a ##23	ENSGT00390000008158.b.b.a.b.c.b.a ##27	ENSGT00940000165143.a.a.f ##23	ENSGT00390000008158.b.b.a.b.c.b.b.a.a ##27	ENSGT00390000008158.b.a.f ##27	ENSGT00390000008158.b.b.a.a.b ##27	ENSGT00510000051675.e.a #29	ENSGT00390000010118.c.a.a.a.b ##28	ENSGT00940000155620.r.d ##31	ENSGT00390000006100.o ##32	ENSGT00940000158230.b.a.a.a ##33	ENSGT00940000165149.e.a ##34	ENSGT00940000166523.f ##35	ENSGT00410000029015.a ##36
Cyprininae_a	ANCESTRAL SPECIES	117	ENSGT00390000002634.a.e	ENSGT00940000167370.c ##10	ENSGT00950000183180.a.b.g.a ##11	ENSGT00940000158438.n.b ##12	ENSGT00940000154566.b ##13	ENSGT00940000160567.r ##14	ENSGT00940000159412.b ##15	ENSGT00760000119652.h.a ##17	ENSGT00760000119652.g ##17	ENSGT00730000111185.eb.b ##18	ENSGT00940000159172.d ##19	ENSGT00940000160276.f ##20	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a.a ##21	ENSGT00510000048165	ENSGT00940000165753.f ##22	ENSGT00940000165143.a.b.c ##23	ENSGT00940000165143.a.a.e.a.a ##23	ENSGT00390000008158.b.b.a.b.c.b.a ##27	ENSGT00940000165143.a.a.f ##23	ENSGT00390000008158.b.b.a.b.c.b.b.a.a ##27	ENSGT00390000008158.b.a.f ##27	ENSGT00390000008158.b.b.a.a.b ##27	ENSGT00510000051675.e.a #29	ENSGT00390000010118.c.a.a.a.b ##28	ENSGT00940000155620.r.d ##31	ENSGT00390000006100.o ##32	ENSGT00940000158230.b.a.a.a ##33	ENSGT00940000165149.f ##34	ENSGT00940000165149.e.a ##34	ENSGT00940000166523.f ##35
Golden-line barbel	MODERN SPECIES	152	ENSSGRG00000048097 ##9	dnase2 (ENSSGRG00000048098)	rgl2 (ENSSGRG00000048099) ##10	ENSSGRG00000048100 ##11	ENSSGRG00000048101 ##12	smg5 (ENSSGRG00000048102) ##13	PAQR6 (ENSSGRG00000048228) ##14	ntrk1 (ENSSGRG00000048230) ##15	ENSSGRG00000048231 ##17	ENSSGRG00000048232 ##17	rbm8a (ENSSGRG00000048234) ##18	otud7b (ENSSGRG00000048240) ##19	mtmr11 (ENSSGRG00000048241) ##20	SV2A (ENSSGRG00000048249) ##21	bola1 (ENSSGRG00000048479)	nr2f5 (ENSSGRG00000048480) ##22	rpz2 (ENSSGRG00000048484) ##23	rpz (ENSSGRG00000048485) ##23	ENSSGRG00000048486 ##27	rpz (ENSSGRG00000048487) ##23	ENSSGRG00000048488 ##27	rpz5 (ENSSGRG00000048490) ##27	rpz4 (ENSSGRG00000048492) ##27	ENSSGRG00000048493 #29	ENSSGRG00000048495 ##28	ENSSGRG00000048497	ubqln4 (ENSSGRG00000048501) ##31	lamtor2 (ENSSGRG00000048585) ##32	rab25b (ENSSGRG00000048591) ##33	rab11al (ENSSGRG00000048595) ##34	ENSSGRG00000048597 ##35
Common carp reference	MODERN SPECIES	47	ENSCCRG00000017383 ##9	rgl2 (ENSCCRG00000000581) ##10	ENSCCRG00000000629 ##11	ENSCCRG00000031280 ##12	smg5 (ENSCCRG00000022463) ##13	ENSCCRG00000022429 ##14	ntrk1 (ENSCCRG00000022331) ##15	ENSCCRG00000081920 ##17	ENSCCRG00000070372 ##17	rbm8a (ENSCCRG00000022276) ##18	otud7b (ENSCCRG00000022268) ##19	mtmr11 (ENSCCRG00000022263) ##20	ENSCCRG00000070042	SV2A (ENSCCRG00000036969) ##21	bola1 (ENSCCRG00000070204)	nr2f5 (ENSCCRG00000040995) ##22	rpz2 (ENSCCRG00000072743) ##23	rpz (ENSCCRG00000068308) ##23	ENSCCRG00000003846 ##27	rpz (ENSCCRG00000059943) ##23	ENSCCRG00000079744 ##27	rpz5 (ENSCCRG00000068261) ##27	rpz4 (ENSCCRG00000003839) ##27	ENSCCRG00000058441 #29	ENSCCRG00000003597 ##28	ENSCCRG00000003589	ENSCCRG00000058729 ##30	ENSCCRG00000003586 #30	ENSCCRG00000003583 #30	ubqln4 (ENSCCRG00000003459) ##31	lamtor2 (ENSCCRG00000063048) ##32
Goldfish	MODERN SPECIES	7	ENSCARG00000002877	rgl2 (ENSCARG00000002822) ##10	dnase2 (ENSCARG00000002800)	ENSCARG00000002787 ##11	SYNGAP1 (ENSCARG00000002740) ##12	smg5 (ENSCARG00000002607) ##13	PAQR6 (ENSCARG00000002585) ##14	ntrk1 (ENSCARG00000002564) ##15	ENSCARG00000002551 ##17	ENSCARG00000002545 ##17	rbm8a (ENSCARG00000002532) ##18	otud7b (ENSCARG00000002511) ##19	mtmr11 (ENSCARG00000002481) ##20	SV2A (ENSCARG00000002253) ##21	bola1 (ENSCARG00000002189)	nr2f5 (ENSCARG00000002177) ##22	rpz2 (ENSCARG00000002157) ##23	rpz (ENSCARG00000002148) ##23	ENSCARG00000002136 ##27	rpz (ENSCARG00000002127) ##23	ENSCARG00000002117 ##27	rpz5 (ENSCARG00000002111) ##27	rpz4 (ENSCARG00000002104) ##27	ENSCARG00000002034 ##30	ubqln4 (ENSCARG00000024882) ##31	lamtor2 (ENSCARG00000024852) ##32	rab25b (ENSCARG00000024813) ##33	rab11al (ENSCARG00000024782) ##34	ENSCARG00000024765 ##35	ENSCARG00000024755 ##36	THSD7A (ENSCARG00000024164) ##37