Otomorpha	ANCESTRAL SPECIES	8	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652 #16	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00940000165143.a.b #23	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a ##25	ENSGT00390000008158.b.b.a.a ##25	ENSGT01010000223409	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r	ENSGT00390000006100	ENSGT00940000158230.b.a	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b	ENSGT00940000155333.B
Otophysi	ANCESTRAL SPECIES	1	ENSGT01010000222294.c.b.b.a.a.b.a.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652 #16	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00940000165143.a.b #23	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a ##25	ENSGT00390000008158.b.b.a.a ##25	ENSGT01010000223409	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r	ENSGT00390000006100	ENSGT00940000158230.b.a	ENSGT00940000165149	ENSGT00940000166523	ENSGT00410000029015	ENSGT00940000155427.a
Characiphysae	ANCESTRAL SPECIES	37	ENSGT01010000222294.c.b.b.a.a.b.a.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652 #16	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00940000165143.a.b #23	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a ##25	ENSGT00390000008158.b.b.a.a ##25	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r	ENSGT00390000006100	ENSGT00940000158230.b.a	ENSGT00940000165149	ENSGT00940000166523	ENSGT00410000029015	ENSGT00940000155427.a	ENSGT00950000182883.a.b.b
Characiphysae_b	ANCESTRAL SPECIES	37	ENSGT01010000222294.c.b.b.a.a.b.a.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652 #16	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00940000165143.a.b #23	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a ##25	ENSGT00390000008158.b.b.a.a ##25	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r	ENSGT00390000006100	ENSGT00940000158230.b.a	ENSGT00940000165149	ENSGT00940000166523	ENSGT00410000029015	ENSGT00940000155427.a	ENSGT00950000182883.a.b.b
Electric eel	MODERN SPECIES	206	tmem14ca (ENSEEEG00000015924) #7	ENSEEEG00000015930 #8	EEF1E1 (ENSEEEG00000015935) #9	slc35b3 (ENSEEEG00000015943) #10	ENSEEEG00000015961 #11	tfap2a (ENSEEEG00000015967) #12	bloc1s5 (ENSEEEG00000015972) #13	txndc5 (ENSEEEG00000015974) #14	bmp6 (ENSEEEG00000015985) #15	afp4 (ENSEEEG00000015998) #16	rbm8a (ENSEEEG00000016000) #17	otud7b (ENSEEEG00000016001) #18	mtmr11 (ENSEEEG00000016002) #19	SV2A (ENSEEEG00000016005) #20	bola1 (ENSEEEG00000016007) #21	nr2f5 (ENSEEEG00000016009) #22	rpz2 (ENSEEEG00000016010) #23	rpz (ENSEEEG00000016011) #24	rpz6 (ENSEEEG00000016013) #25
Characoidei	ANCESTRAL SPECIES	34	ENSGT01010000222294.c.b.b.a.a.b.a.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652 #16	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00940000165143.a.b #23	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a ##25	ENSGT00390000008158.b.b.a.a ##25	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r	ENSGT00390000006100	ENSGT00940000158230.b.a	ENSGT00940000165149	ENSGT00940000166523	ENSGT00410000029015	ENSGT00940000155427.a	ENSGT00950000182883.a.b.b
Red-bellied piranha	MODERN SPECIES	144	ENSPNAG00000028077	dnase2 (ENSPNAG00000028105)	rgl2 (ENSPNAG00000005615)	PHF1 (ENSPNAG00000028196)	SYNGAP1 (ENSPNAG00000028272)	smg5 (ENSPNAG00000028363)	PAQR6 (ENSPNAG00000004347)	ntrk1 (ENSPNAG00000004793)	afp4 (ENSPNAG00000028495) #16	rbm8a (ENSPNAG00000028502) #17	otud7b (ENSPNAG00000028593) #18	mtmr11 (ENSPNAG00000028681) #19	ENSPNAG00000028689	SV2A (ENSPNAG00000005350) #20	bola1 (ENSPNAG00000028796) #21	nr2f5 (ENSPNAG00000005286) #22	rpz2 (ENSPNAG00000006746) #23	rpz (ENSPNAG00000006747) #24	rpz6 (ENSPNAG00000006975) #25	rpz5 (ENSPNAG00000004454) ##25	rpz5 (ENSPNAG00000004457) ##25	rpz4 (ENSPNAG00000004460) ##25	ENSPNAG00000005966	ENSPNAG00000005320	ENSPNAG00000006283	ENSPNAG00000006874	zgc:174938 (ENSPNAG00000004470)	ubqln4 (ENSPNAG00000029005)	lamtor2 (ENSPNAG00000004495)	rab25b (ENSPNAG00000006569)	rab11al (ENSPNAG00000029085)
Mexicana tetra	MODERN SPECIES	36	ENSAMXG00000024611	dnase2 (ENSAMXG00000036815)	rgl2 (ENSAMXG00000024613)	ENSAMXG00000024614	SYNGAP1 (ENSAMXG00000024615)	smg5 (ENSAMXG00000024616)	PAQR6 (ENSAMXG00000042779)	ntrk1 (ENSAMXG00000024617)	afp4 (ENSAMXG00000036698) #16	rbm8a (ENSAMXG00000040754) #17	otud7b (ENSAMXG00000024852) #18	ENSAMXG00000024623	mtmr11 (ENSAMXG00000024622) #19	SV2A (ENSAMXG00000024624) #20	bola1 (ENSAMXG00000025436) #21	nr2f5 (ENSAMXG00000040260) #22	rpz2 (ENSAMXG00000025025) #23	rpz (ENSAMXG00000025026) #24	rpz6 (ENSAMXG00000025027) #25	rpz5 (ENSAMXG00000025028) ##25	rpz4 (ENSAMXG00000025029) ##25	ENSAMXG00000032508	ENSAMXG00000038518	ENSAMXG00000034787	zgc:174938 (ENSAMXG00000024628)	ubqln4 (ENSAMXG00000024629)	lamtor2 (ENSAMXG00000039223)	rab25b (ENSAMXG00000029712)	rab11al (ENSAMXG00000024632)	ENSAMXG00000024633
Channel catfish	MODERN SPECIES	15	ENSIPUG00000006948	dnase2 (ENSIPUG00000006929)	rgl2 (ENSIPUG00000006874)	PHF1 (ENSIPUG00000006848)	SYNGAP1 (ENSIPUG00000006816)	Smg5 (ENSIPUG00000006624)	paqr6 (ENSIPUG00000006591)	ntrk1 (ENSIPUG00000006577)	AFP4 (ENSIPUG00000006556) #16	rbm8a (ENSIPUG00000006525) #17	otud7b (ENSIPUG00000006490) #18	mtmr11 (ENSIPUG00000006433) #19	ENSIPUG00000006411	sv2a (ENSIPUG00000006382) #20	bola1 (ENSIPUG00000006373) #21	nr2f5 (ENSIPUG00000006336) #22	rpz2 (ENSIPUG00000006329) #23	rpz (ENSIPUG00000006322) #24	rpz6 (ENSIPUG00000006309) #25	rpz5 (ENSIPUG00000006301) ##25	rpz4 (ENSIPUG00000006299) ##25	tmem176l.2 (ENSIPUG00000006283)	rpz (ENSIPUG00000006275) #24	rpz5 (ENSIPUG00000006263) ##25	rpz2 (ENSIPUG00000006255) #23	rpz2 (ENSIPUG00000006245) #23	rpz5 (ENSIPUG00000006235) ##25	zgc:174938 (ENSIPUG00000006220)	Ubqln4 (ENSIPUG00000006179)	lamtor2 (ENSIPUG00000006155)	Rab25 (ENSIPUG00000006126)
Cyprinoidei	ANCESTRAL SPECIES	25	ENSGT01010000222294.c.b.b.a.a.b.a.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567.r	ENSGT00940000159412	ENSGT00760000119652 #16	ENSGT00730000111185.eb #17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00940000165143.a.b #23	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a ##25	ENSGT00390000008158.b.b.a.a ##25	ENSGT00510000051675.e.a	ENSGT00390000010118.c.a.a	ENSGT00510000051675.e.b.a	ENSGT00940000155620.r	ENSGT00390000006100	ENSGT00940000158230.b.a	ENSGT00940000165149.e	ENSGT00940000166523	ENSGT00410000029015	ENSGT00940000155427.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	84	ENSGT01100000263583.c	ENSGT00940000159697.i.a	ENSGT01010000222294.c.b.b.a.a.b.a.b.a	ENSGT00390000002634.a.e	ENSGT00940000167370.d	ENSGT00950000183180.a.b.g.b	ENSGT00940000158438.n.a	ENSGT00940000154566.a	ENSGT00940000160567.q	ENSGT00940000159412.a	ENSGT00760000119652.h.b #16	ENSGT00730000111185.eb.a #17	ENSGT00940000159172.c #18	ENSGT00940000160276.e #19	ENSGT00950000182940.b.a.b.a.a.b #20	ENSGT00940000165753.e #22	ENSGT00940000165143.a.b.d #23	ENSGT00940000165143.a.a.e.a.b #24	ENSGT00390000008158.b.b.a.b.c.a #25	ENSGT00390000008158.b.b.a.b.d #25	ENSGT00390000008158.b.a.e ##25	ENSGT00390000008158.b.b.a.a.a ##25	ENSGT00390000010118.c.a.a.a.a	ENSGT00940000163727.r	ENSGT00510000051675.e.b.b	ENSGT00940000155620.r.c	ENSGT00390000006100.p	ENSGT00940000158230.b.a.a.b	ENSGT00940000158230.b.a.b	ENSGT00940000165149.e.b	ENSGT00940000166523.e
Goldfish	MODERN SPECIES	35	fxyd3 (ENSCARG00000049352)	hpn (ENSCARG00000049421)	ENSCARG00000049595	rgl2 (ENSCARG00000049643)	PHF1 (ENSCARG00000049711)	SYNGAP1 (ENSCARG00000050108)	smg5 (ENSCARG00000050312)	PAQR6 (ENSCARG00000050439)	ntrk1 (ENSCARG00000050467)	ENSCARG00000050539 #16	ENSCARG00000050558 #16	rbm8a (ENSCARG00000050575) #17	otud7b (ENSCARG00000050632) #18	mtmr11 (ENSCARG00000050674) #19	SV2A (ENSCARG00000050747) #20	nr2f5 (ENSCARG00000050971) #22	rpz (ENSCARG00000051041) #24	ENSCARG00000051047 #25	ENSCARG00000051078 #25	rpz5 (ENSCARG00000051086) ##25	rpz4 (ENSCARG00000051098) ##25	ENSCARG00000051113	ENSCARG00000051145	tmem176l.2 (ENSCARG00000051174)	ubqln4 (ENSCARG00000051231)	lamtor2 (ENSCARG00000051675)	rab25b (ENSCARG00000051711)	rab11al (ENSCARG00000051789)	ENSCARG00000051816	ENSCARG00000051823	THSD7A (ENSCARG00000051904)
Cyprininae_a	ANCESTRAL SPECIES	78	ENSGT01100000263583.d	ENSGT01070000253873	ENSGT00940000159697.i.b	ENSGT01010000222294.c.b.b.a.a.b.a.b.b	ENSGT00940000167370.d	ENSGT00950000183180.a.b.g.b	ENSGT00940000158438.n.a	ENSGT00940000154566.a	ENSGT00940000160567.q	ENSGT00940000159412.a	ENSGT00760000119652.h.b #16	ENSGT00730000111185.eb.a #17	ENSGT00940000159172.c #18	ENSGT00940000160276.e #19	ENSGT00950000182940.b.a.b.a.a.b #20	ENSGT00940000165753.e #22	ENSGT00940000165143.a.b.d #23	ENSGT00940000165143.a.a.e.a.b #24	ENSGT00390000008158.b.b.a.b.c.a #25	ENSGT00390000008158.b.b.a.b.d #25	ENSGT00390000008158.b.a.e ##25	ENSGT00390000008158.b.b.a.a.a ##25	ENSGT00390000010118.c.a.a.a.a	ENSGT00940000163727.r	ENSGT00510000051675.e.b.b	ENSGT00940000155620.r.c	ENSGT00390000006100.p	ENSGT00940000158230.b.a.a.b	ENSGT00940000158230.b.a.b	ENSGT00940000165149.e.b	ENSGT00940000166523.e
Common carp reference	MODERN SPECIES	2	ENSCCRG00000077158	fxyd3 (ENSCCRG00000064664)	hpn (ENSCCRG00000042594)	ENSCCRG00000042654	rgl2 (ENSCCRG00000042662)	ENSCCRG00000042672	ENSCCRG00000031543	smg5 (ENSCCRG00000002969)	ENSCCRG00000003270	ntrk1 (ENSCCRG00000003301)	ENSCCRG00000063671 #16	rbm8a (ENSCCRG00000068126) #17	otud7b (ENSCCRG00000062979) #18	mtmr11 (ENSCCRG00000005000) #19	SV2A (ENSCCRG00000003867) #20	nr2f5 (ENSCCRG00000059545) #22	rpz2 (ENSCCRG00000073194) #23	rpz (ENSCCRG00000057350) #24	ENSCCRG00000078456 #25	rpz (ENSCCRG00000070641) #24	ENSCCRG00000060201 #25	rpz5 (ENSCCRG00000064692) ##25	rpz4 (ENSCCRG00000003698) ##25	ENSCCRG00000076342	ENSCCRG00000003694	ENSCCRG00000003662	ENSCCRG00000078437	ubqln4 (ENSCCRG00000050833)	lamtor2 (ENSCCRG00000003428)	rab25b (ENSCCRG00000003390)	rab11al (ENSCCRG00000058461)
Golden-line barbel	MODERN SPECIES	149	ENSSGRG00000002289	dnase2 (ENSSGRG00000002288)	rgl2 (ENSSGRG00000002287)	PHF1 (ENSSGRG00000002286)	SYNGAP1 (ENSSGRG00000002283)	smg5 (ENSSGRG00000001733)	PAQR6 (ENSSGRG00000001712)	ntrk1 (ENSSGRG00000001708)	ENSSGRG00000001706 #16	ENSSGRG00000001702 #16	rbm8a (ENSSGRG00000001665) #17	otud7b (ENSSGRG00000001364) #18	mtmr11 (ENSSGRG00000001328) #19	SV2A (ENSSGRG00000001311) #20	ENSSGRG00000001302	nr2f5 (ENSSGRG00000001240) #22	rpz2 (ENSSGRG00000001223) #23	ENSSGRG00000001214 #25	ENSSGRG00000001207 #25	rpz5 (ENSSGRG00000001195) ##25	rpz4 (ENSSGRG00000001186) ##25	ENSSGRG00000001174	ENSSGRG00000001156	ubqln4 (ENSSGRG00000053311)	lamtor2 (ENSSGRG00000053310)	rab25b (ENSSGRG00000053309)	rab11al (ENSSGRG00000053308)	ENSSGRG00000053307	THSD7A (ENSSGRG00000053303)	ENSSGRG00000053297	ENSSGRG00000053290
Cyprininae	ANCESTRAL SPECIES	83	ENSGT00940000160272.d	ENSGT00940000167370.c	ENSGT00950000183180.a.b.g.a	ENSGT00940000158438.n.b	ENSGT00940000154566.b	ENSGT00940000160567.r	ENSGT00940000159412.b	ENSGT00760000119652.h.a #16	ENSGT00760000119652.g #16	ENSGT00730000111185.eb.b #17	ENSGT00940000159172.d #18	ENSGT00940000160276.f #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753.f #22	ENSGT00940000165143.a.b.c #23	ENSGT00940000165143.a.a.e.a.a #24	ENSGT00390000008158.b.b.a.b.c.b.a #25	ENSGT00940000165143.a.a.f #24	ENSGT00390000008158.b.b.a.b.c.b.b.a.a #25	ENSGT00390000008158.b.a.f ##25	ENSGT00390000008158.b.b.a.a.b ##25	ENSGT00510000051675.e.a	ENSGT00390000010118.c.a.a.a.b	ENSGT00940000155620.r.d	ENSGT00390000006100.o	ENSGT00940000158230.b.a.a.a	ENSGT00940000165149.e.a	ENSGT00940000166523.f	ENSGT00410000029015.a
Cyprininae_a	ANCESTRAL SPECIES	117	ENSGT00390000002634.a.e	ENSGT00940000167370.c	ENSGT00950000183180.a.b.g.a	ENSGT00940000158438.n.b	ENSGT00940000154566.b	ENSGT00940000160567.r	ENSGT00940000159412.b	ENSGT00760000119652.h.a #16	ENSGT00760000119652.g #16	ENSGT00730000111185.eb.b #17	ENSGT00940000159172.d #18	ENSGT00940000160276.f #19	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753.f #22	ENSGT00940000165143.a.b.c #23	ENSGT00940000165143.a.a.e.a.a #24	ENSGT00390000008158.b.b.a.b.c.b.a #25	ENSGT00940000165143.a.a.f #24	ENSGT00390000008158.b.b.a.b.c.b.b.a.a #25	ENSGT00390000008158.b.a.f ##25	ENSGT00390000008158.b.b.a.a.b ##25	ENSGT00510000051675.e.a	ENSGT00390000010118.c.a.a.a.b	ENSGT00940000155620.r.d	ENSGT00390000006100.o	ENSGT00940000158230.b.a.a.a	ENSGT00940000165149.f	ENSGT00940000165149.e.a	ENSGT00940000166523.f
Golden-line barbel	MODERN SPECIES	152	ENSSGRG00000048097	dnase2 (ENSSGRG00000048098)	rgl2 (ENSSGRG00000048099)	ENSSGRG00000048100	ENSSGRG00000048101	smg5 (ENSSGRG00000048102)	PAQR6 (ENSSGRG00000048228)	ntrk1 (ENSSGRG00000048230)	ENSSGRG00000048231 #16	ENSSGRG00000048232 #16	rbm8a (ENSSGRG00000048234) #17	otud7b (ENSSGRG00000048240) #18	mtmr11 (ENSSGRG00000048241) #19	SV2A (ENSSGRG00000048249) #20	bola1 (ENSSGRG00000048479) #21	nr2f5 (ENSSGRG00000048480) #22	rpz2 (ENSSGRG00000048484) #23	rpz (ENSSGRG00000048485) #24	ENSSGRG00000048486 #25	rpz (ENSSGRG00000048487) #24	ENSSGRG00000048488 #25	rpz5 (ENSSGRG00000048490) ##25	rpz4 (ENSSGRG00000048492) ##25	ENSSGRG00000048493	ENSSGRG00000048495	ENSSGRG00000048497	ubqln4 (ENSSGRG00000048501)	lamtor2 (ENSSGRG00000048585)	rab25b (ENSSGRG00000048591)	rab11al (ENSSGRG00000048595)	ENSSGRG00000048597
Common carp reference	MODERN SPECIES	47	ENSCCRG00000017383	rgl2 (ENSCCRG00000000581)	ENSCCRG00000000629	ENSCCRG00000031280	smg5 (ENSCCRG00000022463)	ENSCCRG00000022429	ntrk1 (ENSCCRG00000022331)	ENSCCRG00000081920 #16	ENSCCRG00000070372 #16	rbm8a (ENSCCRG00000022276) #17	otud7b (ENSCCRG00000022268) #18	mtmr11 (ENSCCRG00000022263) #19	ENSCCRG00000070042	SV2A (ENSCCRG00000036969) #20	bola1 (ENSCCRG00000070204) #21	nr2f5 (ENSCCRG00000040995) #22	rpz2 (ENSCCRG00000072743) #23	rpz (ENSCCRG00000068308) #24	ENSCCRG00000003846 #25	rpz (ENSCCRG00000059943) #24	ENSCCRG00000079744 #25	rpz5 (ENSCCRG00000068261) ##25	rpz4 (ENSCCRG00000003839) ##25	ENSCCRG00000058441	ENSCCRG00000003597	ENSCCRG00000003589	ENSCCRG00000058729	ENSCCRG00000003586	ENSCCRG00000003583	ubqln4 (ENSCCRG00000003459)	lamtor2 (ENSCCRG00000063048)
Goldfish	MODERN SPECIES	7	ENSCARG00000002877	rgl2 (ENSCARG00000002822)	dnase2 (ENSCARG00000002800)	ENSCARG00000002787	SYNGAP1 (ENSCARG00000002740)	smg5 (ENSCARG00000002607)	PAQR6 (ENSCARG00000002585)	ntrk1 (ENSCARG00000002564)	ENSCARG00000002551 #16	ENSCARG00000002545 #16	rbm8a (ENSCARG00000002532) #17	otud7b (ENSCARG00000002511) #18	mtmr11 (ENSCARG00000002481) #19	SV2A (ENSCARG00000002253) #20	bola1 (ENSCARG00000002189) #21	nr2f5 (ENSCARG00000002177) #22	rpz2 (ENSCARG00000002157) #23	rpz (ENSCARG00000002148) #24	ENSCARG00000002136 #25	rpz (ENSCARG00000002127) #24	ENSCARG00000002117 #25	rpz5 (ENSCARG00000002111) ##25	rpz4 (ENSCARG00000002104) ##25	ENSCARG00000002034	ubqln4 (ENSCARG00000024882)	lamtor2 (ENSCARG00000024852)	rab25b (ENSCARG00000024813)	rab11al (ENSCARG00000024782)	ENSCARG00000024765	ENSCARG00000024755	THSD7A (ENSCARG00000024164)
Zebrafish	MODERN SPECIES	7	dnase2 (ENSDARG00000073893)	rgl2 (ENSDARG00000007727)	PHF1 (ENSDARG00000057439)	ENSDARG00000069765	smg5 (ENSDARG00000041481)	PAQR6 (ENSDARG00000041483)	ntrk1 (ENSDARG00000004586)	ENSDARG00000041490 #16	afp4 (ENSDARG00000095863) #16	rbm8a (ENSDARG00000016516) #17	otud7b (ENSDARG00000017220) #18	mtmr11 (ENSDARG00000069755) #19	ENSDARG00000104269	SV2A (ENSDARG00000059945) #20	bola1 (ENSDARG00000039915) #21	nr2f5 (ENSDARG00000033172) #22	ENSDARG00000091909	rpz (ENSDARG00000091161) #24	rpz2 (ENSDARG00000091215) #23	rpz6 (ENSDARG00000089889) #25	rpz3 (ENSDARG00000069728) #25	rpz5 (ENSDARG00000075718) ##25	rpz4 (ENSDARG00000039871) ##25	ENSDARG00000099491	ENSDARG00000099715	ENSDARG00000087297	zgc:174938 (ENSDARG00000075622)	ENSDARG00000105043	ENSDARG00000104134	ENSDARG00000098387	tmem176l.2 (ENSDARG00000089399)
Clupeiformes	ANCESTRAL SPECIES	79	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e.d	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652 #16	ENSGT00730000111185.db.a ##17	ENSGT00940000159172 #18	ENSGT00940000160276 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00940000165143.a.b #23	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a ##25	ENSGT00390000008158.b.b.a.a ##25	ENSGT00510000051675	ENSGT00390000010118.c.a.a	ENSGT00940000155620.r	ENSGT00390000006100	ENSGT00940000158230.b.a	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b	ENSGT00940000155333.B	ENSGT00390000008765
Denticle herring	MODERN SPECIES	15	ENSDCDG00000015280	pbx2 (ENSDCDG00000015258)	ENSDCDG00000015247	ENSDCDG00000015240	rgl2 (ENSDCDG00000015216)	PHF1 (ENSDCDG00000015004)	SYNGAP1 (ENSDCDG00000014494)	smg5 (ENSDCDG00000014414)	PAQR6 (ENSDCDG00000014390)	ntrk1 (ENSDCDG00000014373)	rbm8a (ENSDCDG00000014349) ##17	otud7b (ENSDCDG00000014335) #18	mtmr11 (ENSDCDG00000014305) #19	SV2A (ENSDCDG00000014031) #20	bola1 (ENSDCDG00000013964) #21	nr2f5 (ENSDCDG00000013941) #22	rpz2 (ENSDCDG00000013924) #23	rpz (ENSDCDG00000013912) #24	rpz6 (ENSDCDG00000023300) #25	rpz5 (ENSDCDG00000023298) ##25	rpz4 (ENSDCDG00000023296) ##25	zgc:174938 (ENSDCDG00000023295)	ubqln4 (ENSDCDG00000023261)	lamtor2 (ENSDCDG00000023240)	rab25b (ENSDCDG00000023191)	rab11al (ENSDCDG00000023147)	ENSDCDG00000023146	lmna (ENSDCDG00000023114)	ENSDCDG00000023091	gpatch4 (ENSDCDG00000023083)	ENSDCDG00000023081
Atlantic herring	MODERN SPECIES	2	ENSCHAG00000006133	SYNGAP1 (ENSCHAG00000005164)	smg5 (ENSCHAG00000002837)	PAQR6 (ENSCHAG00000002634)	ntrk1 (ENSCHAG00000002438)	ENSCHAG00000002411	ENSCHAG00000002343	ENSCHAG00000009602 #16	ENSCHAG00000009551 #16	ENSCHAG00000009521	rbm8a (ENSCHAG00000009474) ##17	otud7b (ENSCHAG00000009441) #18	mtmr11 (ENSCHAG00000009351) #19	SV2A (ENSCHAG00000009146) #20	bola1 (ENSCHAG00000009117) #21	nr2f5 (ENSCHAG00000009093) #22	ENSCHAG00000008936	rpz2 (ENSCHAG00000008923) #23	rpz (ENSCHAG00000008914) #24	ENSCHAG00000008805	rpz6 (ENSCHAG00000008797) #25	rpz5 (ENSCHAG00000008789) ##25	rpz4 (ENSCHAG00000008787) ##25	tmem176l.4 (ENSCHAG00000008783)	zgc:174938 (ENSCHAG00000008762)	ubqln4 (ENSCHAG00000008716)	lamtor2 (ENSCHAG00000008683)	rab25b (ENSCHAG00000008626)	rab11al (ENSCHAG00000008561)	ENSCHAG00000008553	lmna (ENSCHAG00000008483)