Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00940000166061.b #8	ENSGT00390000002634.a.e #9	ENSGT00940000167370 #10	ENSGT00950000183180.a.b #11	ENSGT00940000158438.n #12	ENSGT00940000154566 #13	ENSGT00940000160567 #14	ENSGT00940000159412 #15	ENSGT00760000119652	ENSGT00730000111185.eb #16	ENSGT00940000159172 #17	ENSGT00940000160276 #18	ENSGT00650000094861 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B #24	ENSGT00940000170682	ENSGT00940000165143.a.a #25	ENSGT00390000008158.b.b.a.b #26	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g	ENSGT00390000010118.c.a.a	ENSGT00390000006100	ENSGT00940000158230.b.a	ENSGT00940000165149	ENSGT00940000166523
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00940000166527 #7	ENSGT00940000166061.b #8	ENSGT00390000002634.a.e #9	ENSGT00940000167370 #10	ENSGT00950000183180.a.b #11	ENSGT00940000158438.n #12	ENSGT00940000154566 #13	ENSGT00940000160567 #14	ENSGT00940000159412 #15	ENSGT00730000111185.eb #16	ENSGT00940000159172 #17	ENSGT00940000160276 #18	ENSGT00650000094861 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B #24	ENSGT00940000170682	ENSGT00940000165143.a.a #25	ENSGT00390000008158.b.b.a.b #26	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00510000051675.h.b.a	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.c.a	ENSGT00510000051675.h.a	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100	ENSGT00940000158230.b.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000166527 #7	ENSGT00940000166061.b #8	ENSGT00390000002634.a.e #9	ENSGT00940000167370 #10	ENSGT00950000183180.a.b #11	ENSGT00940000158438.n #12	ENSGT00940000154566 #13	ENSGT00940000160567 #14	ENSGT00940000159412 #15	ENSGT00730000111185.eb #16	ENSGT00940000159172 #17	ENSGT00940000160276 #18	ENSGT00650000094861 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B #24	ENSGT00940000170682	ENSGT00940000165143.a.a #25	ENSGT00390000008158.b.b.a.b #26	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00940000164178.s.b #29	ENSGT00510000051675.g.d	ENSGT00390000010118.c.a.a	ENSGT00390000006100	ENSGT00940000158230.b.a	ENSGT00940000165149	ENSGT00940000166523	ENSGT00940000157244.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000166527 #7	ENSGT00940000166061.b #8	ENSGT00390000002634.a.e #9	ENSGT00940000167370 #10	ENSGT00950000183180.a.b #11	ENSGT00940000158438.n #12	ENSGT00940000154566 #13	ENSGT00940000160567 #14	ENSGT00940000159412 #15	ENSGT00730000111185.eb #16	ENSGT00940000159172 #17	ENSGT00940000160276 #18	ENSGT00650000094861 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B #24	ENSGT00940000170682	ENSGT00940000165143.a.a #25	ENSGT00390000008158.b.b.a.b #26	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00940000164178.s.b #29	ENSGT00940000164178.s.a ##29	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.c.a	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00940000166527 #7	ENSGT00940000166061.b #8	ENSGT00390000002634.a.e #9	ENSGT00940000167370 #10	ENSGT00950000183180.a.b #11	ENSGT00940000158438.n #12	ENSGT00940000154566 #13	ENSGT00940000160567 #14	ENSGT00940000159412 #15	ENSGT00730000111185.eb #16	ENSGT00940000159172 #17	ENSGT00940000160276 #18	ENSGT00650000094861 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B #24	ENSGT00940000165143.a.a #25	ENSGT00390000008158.b.b.a.b #26	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00940000164178.s.b #29	ENSGT00940000164178.s.a ##29	ENSGT00510000051675.h.b.b	ENSGT00510000051675.h.b.a	ENSGT00510000051675.g.c.a	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100	ENSGT00940000158230.b.a
Haplochromini_A	ANCESTRAL SPECIES	27	ENSGT00940000166527 #7	ENSGT00940000166061.b #8	ENSGT00390000002634.a.e #9	ENSGT00940000167370 #10	ENSGT00950000183180.a.b #11	ENSGT00940000158438.n #12	ENSGT00940000154566 #13	ENSGT00940000160567 #14	ENSGT00940000159412 #15	ENSGT00730000111185.eb #16	ENSGT00940000159172 #17	ENSGT00940000160276 #18	ENSGT00650000094861 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B #24	ENSGT00940000165143.a.a #25	ENSGT00390000008158.b.b.a.b #26	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00940000164178.s.b #29	ENSGT00940000164178.s.a ##29	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.c.a	ENSGT00510000051675.g.c.b.b	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100	ENSGT00940000158230.b.a
P. nyererei	MODERN SPECIES	433	pbx2 (ENSPNYG00000012906) #7	ENSPNYG00000012935 #8	dnase2 (ENSPNYG00000012955) #9	rgl2 (ENSPNYG00000012979) #10	PHF1 (ENSPNYG00000013037) #11	SYNGAP1 (ENSPNYG00000013123) #12	smg5 (ENSPNYG00000013397) #13	PAQR6 (ENSPNYG00000013500) #14	ntrk1 (ENSPNYG00000013517) #15	rbm8a (ENSPNYG00000013564) #16	otud7b (ENSPNYG00000013585) #17	mtmr11 (ENSPNYG00000013609) #18	ENSPNYG00000013644 #19	SV2A (ENSPNYG00000013663) #20	bola1 (ENSPNYG00000013704) #21	nr2f5 (ENSPNYG00000013716) #22	ENSPNYG00000013734 #23	ENSPNYG00000013752 #24	rpz (ENSPNYG00000013763) #25	rpz6 (ENSPNYG00000013769) #26	rpz5 (ENSPNYG00000013781) #27	rpz4 (ENSPNYG00000013784) #28	ENSPNYG00000013791 #29	ENSPNYG00000013812 #30
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00940000166527 #7	ENSGT00940000166061.b #8	ENSGT00390000002634.a.e #9	ENSGT00940000167370 #10	ENSGT00950000183180.a.b #11	ENSGT00940000158438.n #12	ENSGT00940000154566 #13	ENSGT00940000160567 #14	ENSGT00940000159412 #15	ENSGT00730000111185.eb #16	ENSGT00940000159172 #17	ENSGT00940000160276 #18	ENSGT00650000094861 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00940000170682	ENSGT00940000167095.B #24	ENSGT00510000049239.b.b #23	ENSGT00940000165143.a.a #25	ENSGT00390000008158.b.b.a.b #26	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00940000164178.s.b #29	ENSGT00940000164178.s.a ##29	ENSGT00510000051675.h.b.b	ENSGT00510000051675.g.c.a	ENSGT00510000051675.g.c.b.b	ENSGT00510000051675.g.c.b.a	ENSGT00390000010118.c.a.a	ENSGT00390000006100
Eastern happy	MODERN SPECIES	2	pbx2 (ENSACLG00000008881) #7	ENSACLG00000008899 #8	dnase2 (ENSACLG00000008911) #9	rgl2 (ENSACLG00000008918) #10	PHF1 (ENSACLG00000008933) #11	SYNGAP1 (ENSACLG00000008961) #12	smg5 (ENSACLG00000009311) #13	PAQR6 (ENSACLG00000009375) #14	ntrk1 (ENSACLG00000009587) #15	rbm8a (ENSACLG00000009627) #16	otud7b (ENSACLG00000009638) #17	mtmr11 (ENSACLG00000009660) #18	ENSACLG00000009694 #19	SV2A (ENSACLG00000009697) #20	bola1 (ENSACLG00000009710) #21	nr2f5 (ENSACLG00000009719) #22	ENSACLG00000009726	ENSACLG00000009737 #24	rpz (ENSACLG00000009741) #25	rpz6 (ENSACLG00000009746) #26	rpz5 (ENSACLG00000009751) #27	rpz4 (ENSACLG00000009754) #28	ENSACLG00000009764 #29	ENSACLG00000010177 ##29	ENSACLG00000010200	ENSACLG00000010211	ENSACLG00000010218	ENSACLG00000010229	zgc:174938 (ENSACLG00000010243)	lamtor2 (ENSACLG00000010245)	rab25b (ENSACLG00000010251)
Zebra mbuna	MODERN SPECIES	1093	ATP2C1 (ENSMZEG00005016819)	PIK3R4 (ENSMZEG00005016803)	ENSMZEG00005016796	ENSMZEG00005016792	COL6A6 (ENSMZEG00005016769)	ENSMZEG00005016569	smg5 (ENSMZEG00005016543) #13	PAQR6 (ENSMZEG00005016526) #14	ntrk1 (ENSMZEG00005016495) #15	rbm8a (ENSMZEG00005016453) #16	otud7b (ENSMZEG00005016426) #17	mtmr11 (ENSMZEG00005016405) #18	ENSMZEG00005016395 #19	SV2A (ENSMZEG00005016369) #20	bola1 (ENSMZEG00005016360) #21	nr2f5 (ENSMZEG00005016355) #22	ENSMZEG00005016349 #23	rpz (ENSMZEG00005016345) #25	rpz6 (ENSMZEG00005016342) #26	rpz5 (ENSMZEG00005016335) #27	rpz4 (ENSMZEG00005016332) #28	ENSMZEG00005016322	nr1d2a (ENSMZEG00005016315)	ube2e1 (ENSMZEG00005016310)	ube2e2 (ENSMZEG00005016306)	ENSMZEG00005016299	ZNF385D (ENSMZEG00005016295)	rab5ab (ENSMZEG00005016286)	efhb (ENSMZEG00005016283)	si:dkey-82o10.4 (ENSMZEG00005016280)	ENSMZEG00005016275
Burton s mouthbrooder	MODERN SPECIES	327	pbx2 (ENSHBUG00000008278) #7	ENSHBUG00000001065 #8	dnase2 (ENSHBUG00000008304) #9	rgl2 (ENSHBUG00000008416) #10	ENSHBUG00000008432 #11	SYNGAP1 (ENSHBUG00000008524) #12	smg5 (ENSHBUG00000008654) #13	PAQR6 (ENSHBUG00000000217) #14	ntrk1 (ENSHBUG00000008795) #15	rbm8a (ENSHBUG00000008827) #16	otud7b (ENSHBUG00000008841) #17	mtmr11 (ENSHBUG00000008921) #18	ENSHBUG00000008944 #19	SV2A (ENSHBUG00000009012) #20	bola1 (ENSHBUG00000009032) #21	nr2f5 (ENSHBUG00000009044) #22	ENSHBUG00000009063 #23	ENSHBUG00000009075 #24	rpz (ENSHBUG00000009083) #25	rpz6 (ENSHBUG00000009089) #26	rpz5 (ENSHBUG00000009100) #27	rpz4 (ENSHBUG00000009111) #28	ENSHBUG00000009120	ENSHBUG00000000231 #29	ENSHBUG00000009212 ##29	ENSHBUG00000009223	ENSHBUG00000009235	ENSHBUG00000009248	ENSHBUG00000009259	zgc:174938 (ENSHBUG00000009267)	lamtor2 (ENSHBUG00000009286)
Nile tilapia	MODERN SPECIES	2	her7 (ENSONIG00000032325)	pbx2 (ENSONIG00000008651) #7	dnase2 (ENSONIG00000008649) #9	rgl2 (ENSONIG00000008644) #10	ENSONIG00000033348 #11	SYNGAP1 (ENSONIG00000008635) #12	smg5 (ENSONIG00000008632) #13	PAQR6 (ENSONIG00000008626) #14	ntrk1 (ENSONIG00000008622) #15	rbm8a (ENSONIG00000008608) #16	otud7b (ENSONIG00000008603) #17	mtmr11 (ENSONIG00000008602) #18	SV2A (ENSONIG00000008598) #20	ENSONIG00000033471	bola1 (ENSONIG00000033709) #21	nr2f5 (ENSONIG00000029562) #22	ENSONIG00000008593 #23	ENSONIG00000022659 #24	rpz (ENSONIG00000021082) #25	rpz6 (ENSONIG00000008592) #26	rpz4 (ENSONIG00000037493) #28	ENSONIG00000008588 #29	ENSONIG00000028945	ENSONIG00000008585 ##29	ENSONIG00000030458	ENSONIG00000034333	ENSONIG00000031928	ENSONIG00000028408	ENSONIG00000038383	ENSONIG00000034714	zgc:171704 (ENSONIG00000002152)
Midas cichlid	MODERN SPECIES	872										rbm8a (ENSACIG00000017678) #16	otud7b (ENSACIG00000017648) #17	ENSACIG00000017642	mtmr11 (ENSACIG00000017613) #18	SV2A (ENSACIG00000017594) #20	bola1 (ENSACIG00000017566) #21	nr2f5 (ENSACIG00000017556) #22	ENSACIG00000017542	rpz (ENSACIG00000017536) #25	rpz6 (ENSACIG00000017530) #26	rpz5 (ENSACIG00000017523) #27	ENSACIG00000017516	rpz4 (ENSACIG00000017512) #28	ENSACIG00000017497	ENSACIG00000017475	ENSACIG00000017450	zgc:174938 (ENSACIG00000017433)	lamtor2 (ENSACIG00000017426)	rab25b (ENSACIG00000017414)	rab11al (ENSACIG00000017403)	ENSACIG00000017394	lmna (ENSACIG00000017374)
Pomacentridae	ANCESTRAL SPECIES	25	ENSGT00940000166061.b #8	ENSGT00390000002634.a.e #9	ENSGT00940000167370 #10	ENSGT00950000183180.a.b #11	ENSGT00940000158438.n #12	ENSGT00940000154566 #13	ENSGT00940000160567 #14	ENSGT00940000159412 #15	ENSGT00760000119652	ENSGT00730000111185.eb #16	ENSGT00940000159172 #17	ENSGT00940000160276 #18	ENSGT00650000094861 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B #24	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a
Pomacentridae_A	ANCESTRAL SPECIES	16	ENSGT00940000166061.b #8	ENSGT00390000002634.a.e #9	ENSGT00940000167370 #10	ENSGT00950000183180.a.b #11	ENSGT00940000158438.n #12	ENSGT00940000154566 #13	ENSGT00940000160567 #14	ENSGT00940000159412 #15	ENSGT00760000119652	ENSGT00730000111185.eb #16	ENSGT00940000159172 #17	ENSGT00940000160276 #18	ENSGT00650000094861 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B #24
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00940000166061.b #8	ENSGT00390000002634.a.e #9	ENSGT00940000167370 #10	ENSGT00950000183180.a.b #11	ENSGT00940000158438.n #12	ENSGT00940000154566 #13	ENSGT00940000160567 #14	ENSGT00940000159412 #15	ENSGT00760000119652	ENSGT00730000111185.eb #16	ENSGT00940000159172 #17	ENSGT00940000160276 #18	ENSGT00650000094861 #19	ENSGT00950000182940.b.a.b.a.a #20	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B #24	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a.k	ENSGT00940000155779.a.a.l	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030
Clown anemonefish	MODERN SPECIES	1796							ntrk1 (ENSAOCG00000023857) #15	afp4 (ENSAOCG00000023870)	ENSAOCG00000023879	rbm8a (ENSAOCG00000023887) #16	otud7b (ENSAOCG00000023897) #17	mtmr11 (ENSAOCG00000023938) #18	ENSAOCG00000023946 #19	SV2A (ENSAOCG00000023959) #20	bola1 (ENSAOCG00000023969) #21	nr2f5 (ENSAOCG00000023977) #22
Orange clownfish	MODERN SPECIES	21	ENSAPEG00000023227 #8	dnase2 (ENSAPEG00000023208) #9	rgl2 (ENSAPEG00000023146) #10	PHF1 (ENSAPEG00000023049) #11	SYNGAP1 (ENSAPEG00000023032) #12	smg5 (ENSAPEG00000022949) #13	PAQR6 (ENSAPEG00000022918) #14	ntrk1 (ENSAPEG00000022877) #15	afp4 (ENSAPEG00000022859)	rbm8a (ENSAPEG00000022847) #16	otud7b (ENSAPEG00000022828) #17	mtmr11 (ENSAPEG00000022797) #18	ENSAPEG00000022792 #19	SV2A (ENSAPEG00000022757) #20	bola1 (ENSAPEG00000022655) #21	nr2f5 (ENSAPEG00000022639) #22	ENSAPEG00000022616 #23	ENSAPEG00000022594 #24	ENSAPEG00000022575	ENSAPEG00000022563	ENSAPEG00000022546	dhx16 (ENSAPEG00000022508)	rnf183 (ENSAPEG00000022495)	mgat1a (ENSAPEG00000022450)	sh3bp5la (ENSAPEG00000022428)	ENSAPEG00000022418	GABBR1 (ENSAPEG00000022372)	tnfb (ENSAPEG00000022358)	ENSAPEG00000022349	ENSAPEG00000022341	ENSAPEG00000022323
Spiny chromis	MODERN SPECIES	86	ENSAPOG00000010047	sel1l (ENSAPOG00000009984)	ENSAPOG00000009952	fkbp6 (ENSAPOG00000009934)	ENSAPOG00000009908	ENSAPOG00000009882	CLEC18A (ENSAPOG00000009846)	ntrk1 (ENSAPOG00000009792) #15	afp4 (ENSAPOG00000009768)	rbm8a (ENSAPOG00000009727) #16	otud7b (ENSAPOG00000009679) #17	mtmr11 (ENSAPOG00000009570) #18	ENSAPOG00000009490 #19	SV2A (ENSAPOG00000009474) #20	bola1 (ENSAPOG00000000262) #21	nr2f5 (ENSAPOG00000009372) #22	ENSAPOG00000009350	ENSAPOG00000009331	ENSAPOG00000009275
Bicolor damselfish	MODERN SPECIES	458							ntrk1 (ENSSPAG00000012074) #15	ENSSPAG00000012164	afp4 (ENSSPAG00000012172)	rbm8a (ENSSPAG00000012181) #16	otud7b (ENSSPAG00000012196) #17	mtmr11 (ENSSPAG00000012227) #18	ENSSPAG00000012272 #19	SV2A (ENSSPAG00000012284) #20	bola1 (ENSSPAG00000012313) #21	nr2f5 (ENSSPAG00000012324) #22	ENSSPAG00000012342 #23	ENSSPAG00000012362	ppt2a.2 (ENSSPAG00000012385)	dhx16 (ENSSPAG00000012416)	rnf183 (ENSSPAG00000012532)	mgat1a (ENSSPAG00000012552)	sh3bp5la (ENSSPAG00000012567)	ENSSPAG00000012571	ENSSPAG00000012594	tnfb (ENSSPAG00000012619)	ENSSPAG00000012635	ENSSPAG00000012646	glrx3 (ENSSPAG00000012656)	bag6 (ENSSPAG00000012678)	tspan13a (ENSSPAG00000012698)