Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00510000051675.h.b.b ##30	ENSGT00510000051675.h.b.a ##30	ENSGT00510000051675.g #29	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #32	ENSGT00940000158230.b.a #33	ENSGT00940000165149 #34	ENSGT00940000166523 #35	ENSGT00940000157244.a.b #36	ENSGT00940000155333.B
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000170682	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a #27	ENSGT00940000181547	ENSGT00940000165143.a.b.g ##24	ENSGT00390000008158.b.b.a.a #28	ENSGT00510000051675.h.b.b ##30	ENSGT00510000051675.g.a #29	ENSGT00510000051675.h.b.a ##30	ENSGT00510000051675.g.b ##30	ENSGT00390000006100 #32	ENSGT00940000158230.b.a #33	ENSGT00940000165149 #34
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000170682	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00510000051675.h.b.b ##30	ENSGT00510000051675.g.a #29	ENSGT00510000051675.h.b.a ##30	ENSGT00510000051675.g.b ##30	ENSGT00390000006100 #32	ENSGT00940000158230.b.a #33	ENSGT00940000165149 #34	ENSGT00940000166523 #35	ENSGT00940000157244.a.b #36
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000170682	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00510000051675.h.b.b ##30	ENSGT00510000051675.g.a #29	ENSGT00510000051675.h.b.a ##30	ENSGT00510000051675.g.b ##30	ENSGT00390000006100 #32	ENSGT00940000158230.b.a #33	ENSGT00940000165149 #34	ENSGT00940000166523 #35	ENSGT00940000157244.a.b #36
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000170682	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00510000051675.h.b.b ##30	ENSGT00510000051675.g.a.a #29	ENSGT00510000051675.h.b.a ##30	ENSGT00510000051675.g.b ##30	ENSGT00390000006100 #32	ENSGT00940000158230.b.a #33	ENSGT00940000165149 #34	ENSGT00940000166523 #35	ENSGT00940000157244.a.b #36
Poecilia	ANCESTRAL SPECIES		ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00510000051675.h.b.b ##30	ENSGT00510000051675.g.a.a #29	ENSGT00510000051675.h.b.a ##30	ENSGT00510000051675.g.b ##30	ENSGT00390000006100 #32	ENSGT00940000158230.b.a #33	ENSGT00940000165149 #34	ENSGT00940000166523 #35	ENSGT00940000157244.a.b #36	ENSGT00940000155333.B
NAME_6	ANCESTRAL SPECIES	175					ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00510000051675.h.b.b ##30	ENSGT00510000051675.g.a.a #29	ENSGT00510000051675.h.b.a ##30	ENSGT00510000051675.g.b ##30	ENSGT00390000006100 #32	ENSGT00940000158230.b.a #33	ENSGT00940000165149 #34	ENSGT00940000166523 #35	ENSGT00940000157244.a.b #36	ENSGT00940000155333.B
Sailfin molly	MODERN SPECIES	472															bola1 (ENSPLAG00000008152) #21	nr2f5 (ENSPLAG00000008137) #22	ENSPLAG00000008116 #23	rpz (ENSPLAG00000008099) #24	rpz6 (ENSPLAG00000008092) #25	ENSPLAG00000008082 #26	rpz5 (ENSPLAG00000008067) #27	rpz4 (ENSPLAG00000008058) #28	ENSPLAG00000008049 #29	ENSPLAG00000008043 #30	ENSPLAG00000008027 #31	lamtor2 (ENSPLAG00000008013) #32	rab25b (ENSPLAG00000008004) #33	rab11al (ENSPLAG00000007986) #34	ENSPLAG00000007972 #35	ENSPLAG00000007965 #36
Amazon molly	MODERN SPECIES	513					SYNGAP1 (ENSPFOG00000009917)	smg5 (ENSPFOG00000010191)	PAQR6 (ENSPFOG00000010354)	ntrk1 (ENSPFOG00000010467)	afp4 (ENSPFOG00000010677)	rbm8a (ENSPFOG00000010695)	otud7b (ENSPFOG00000010780)	mtmr11 (ENSPFOG00000010925)	ENSPFOG00000011054	SV2A (ENSPFOG00000011055)	bola1 (ENSPFOG00000020450) #21	nr2f5 (ENSPFOG00000011150) #22	ENSPFOG00000011194 #23	ENSPFOG00000023669	rpz (ENSPFOG00000020451) #24	rpz6 (ENSPFOG00000011206) #25	rpz5 (ENSPFOG00000022427) #27	rpz5 (ENSPFOG00000020452) #27	rpz4 (ENSPFOG00000020453) #28	ENSPFOG00000011217 ##30	ENSPFOG00000011230 #29	ENSPFOG00000011232 ##30	ENSPFOG00000011272 ##30	lamtor2 (ENSPFOG00000011309) #32	rab25b (ENSPFOG00000011310) #33	rab11al (ENSPFOG00000011316) #34	ENSPFOG00000011366 #35
Guppy	MODERN SPECIES	446	pbx2 (ENSPREG00000018201)	ENSPREG00000018192	dnase2 (ENSPREG00000018170)	rgl2 (ENSPREG00000018131)	ENSPREG00000018097	SYNGAP1 (ENSPREG00000017857)	smg5 (ENSPREG00000017713)	PAQR6 (ENSPREG00000017648)	ntrk1 (ENSPREG00000017606)	afp4 (ENSPREG00000017587)	rbm8a (ENSPREG00000017572)	otud7b (ENSPREG00000017548)	mtmr11 (ENSPREG00000017533)	SV2A (ENSPREG00000017505)	bola1 (ENSPREG00000017489) #21	nr2f5 (ENSPREG00000017478) #22	ENSPREG00000017462	rpz (ENSPREG00000017451) #24	rpz6 (ENSPREG00000017443) #25	rpz5 (ENSPREG00000017425) #27	rpz4 (ENSPREG00000017417) #28	ENSPREG00000017402	ENSPREG00000017387 #29	ENSPREG00000017369 ##30	lamtor2 (ENSPREG00000017357) #32	rab25b (ENSPREG00000017337) #33	rab11al (ENSPREG00000017324) #34	ENSPREG00000017309 #35	lmna (ENSPREG00000017213) #36	ENSPREG00000017085	ENSPREG00000017066
Platyfish	MODERN SPECIES	17	dnase2 (ENSXMAG00000013560)	rgl2 (ENSXMAG00000013549)	ENSXMAG00000021298	ENSXMAG00000013539	ENSXMAG00000029645	SYNGAP1 (ENSXMAG00000013527)	smg5 (ENSXMAG00000013499)	PAQR6 (ENSXMAG00000013484)	ntrk1 (ENSXMAG00000013468)	afp4 (ENSXMAG00000013467)	rbm8a (ENSXMAG00000013463)	otud7b (ENSXMAG00000013458)	mtmr11 (ENSXMAG00000013453)	SV2A (ENSXMAG00000013444)	bola1 (ENSXMAG00000019538) #21	nr2f5 (ENSXMAG00000013436) #22	ENSXMAG00000013435	rpz (ENSXMAG00000019536) #24	rpz6 (ENSXMAG00000025231) #25	rpz5 (ENSXMAG00000020380) #27	rpz4 (ENSXMAG00000023516) #28	ENSXMAG00000020842 #29	ENSXMAG00000013432 ##30	ENSXMAG00000013429 ##30	lamtor2 (ENSXMAG00000028948) #32	rab25b (ENSXMAG00000028745) #33	rab11al (ENSXMAG00000027071) #34	ENSXMAG00000013412 #35	ENSXMAG00000028413	lmna (ENSXMAG00000013395) #36	ENSXMAG00000013394
NAME_4	ANCESTRAL SPECIES	46	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00940000170682
Mummichog	MODERN SPECIES	2372	dnase2 (ENSFHEG00000014128)	rgl2 (ENSFHEG00000014121)	ENSFHEG00000014107	SYNGAP1 (ENSFHEG00000014005)	smg5 (ENSFHEG00000013939)	PAQR6 (ENSFHEG00000013671)	ntrk1 (ENSFHEG00000013636)	afp4 (ENSFHEG00000013547)	rbm8a (ENSFHEG00000013538)	otud7b (ENSFHEG00000013521)	ENSFHEG00000013502	mtmr11 (ENSFHEG00000013488)	ENSFHEG00000013439	SV2A (ENSFHEG00000013433)	bola1 (ENSFHEG00000013395) #21	nr2f5 (ENSFHEG00000013382) #22
Sheepshead minnow	MODERN SPECIES	1222																nr2f5 (ENSCVAG00000022196) #22	ENSCVAG00000022216	ENSCVAG00000022225
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000170682	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00510000051675.h.b.b ##30	ENSGT00510000051675.g.a #29	ENSGT00510000051675.h.b.a ##30	ENSGT00510000051675.g.b ##30	ENSGT00390000006100 #32	ENSGT00940000158230.b.a #33	ENSGT00940000165149 #34	ENSGT00940000166523 #35	ENSGT00940000157244.a.b #36
Turquoise killifish	MODERN SPECIES	1614	rgl2 (ENSNFUG00015005264)	ENSNFUG00015005229	ENSNFUG00015005224	SYNGAP1 (ENSNFUG00015005147)	SMG5 (ENSNFUG00015005066)	PAQR6 (ENSNFUG00015005029)	ENSNFUG00015005025	NTRK1 (ENSNFUG00015005005)	afp4 (ENSNFUG00015004984)	rbm8a (ENSNFUG00015004925)	ENSNFUG00015004912	OTUD7B (ENSNFUG00015004893)	MTMR11 (ENSNFUG00015004821)	SV2A (ENSNFUG00015004677)	bola1 (ENSNFUG00015004661) #21	nr2f5 (ENSNFUG00015004653) #22	ENSNFUG00015004646 #23	ENSNFUG00015004643	Nfu_g_1_024366 (ENSNFUG00015004639)	ENSNFUG00015004637	RPZ (ENSNFUG00015004635) #24	Nfu_g_1_010989 (ENSNFUG00015004634) #25	RPZ5 (ENSNFUG00015004631) #27	rpz4 (ENSNFUG00015004629) #28	ENSNFUG00015004625 ##30	ENSNFUG00015004619 #29	ENSNFUG00015004615 ##30	LAMTOR2 (ENSNFUG00015004609) #32	RAB25 (ENSNFUG00015004604) #33	rab11al (ENSNFUG00015004595) #34	ENSNFUG00015004588 #35
Mangrove rivulus	MODERN SPECIES	193	ENSKMAG00000014786	dnase2 (ENSKMAG00000014776)	rgl2 (ENSKMAG00000014716)	ENSKMAG00000014670	SYNGAP1 (ENSKMAG00000014642)	smg5 (ENSKMAG00000014586)	PAQR6 (ENSKMAG00000014542)	ntrk1 (ENSKMAG00000014508)	afp4 (ENSKMAG00000014474)	rbm8a (ENSKMAG00000014454)	otud7b (ENSKMAG00000014408)	mtmr11 (ENSKMAG00000014372)	SV2A (ENSKMAG00000014320)	bola1 (ENSKMAG00000014293) #21	ENSKMAG00000014228	nr2f5 (ENSKMAG00000014219) #22
Oryzias	ANCESTRAL SPECIES	2	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00510000048783.a	ENSGT00940000165143.a.b.g.a.a ##24	ENSGT00390000008158.b.b.a.b #25	ENSGT00940000165143.a.b.g.a.b ##24	ENSGT00390000008158.b.b.a.a.f.b #28	ENSGT00940000165143.a.b.g.b ##24	ENSGT00390000008158.b.b.a.a.f.a #28	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a.e #28	ENSGT00940000163195.A.c	ENSGT01090000260131.d	ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000161037
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00940000170682	ENSGT00510000048783.a	ENSGT00940000165143.a.b.g.a.a ##24	ENSGT00390000008158.b.b.a.b #25	ENSGT00940000165143.a.b.g.a.b ##24	ENSGT00390000008158.b.b.a.a.f.b #28	ENSGT00940000165143.a.b.g.b ##24	ENSGT00390000008158.b.b.a.a.f.a #28	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a.e #28	ENSGT00940000163195.A.c	ENSGT01090000260131.d	ENSGT00390000001883	ENSGT00940000154222.d.a	ENSGT00940000161037
Javanese ricefish	MODERN SPECIES	7	ENSOJAG00000005348	pbx2 (ENSOJAG00000005367)	dnase2 (ENSOJAG00000005393)	rgl2 (ENSOJAG00000005407)	PHF1 (ENSOJAG00000005536)	SYNGAP1 (ENSOJAG00000005637)	smg5 (ENSOJAG00000005804)	PAQR6 (ENSOJAG00000006479)	ntrk1 (ENSOJAG00000006505)	afp4 (ENSOJAG00000006529)	rbm8a (ENSOJAG00000006557)	otud7b (ENSOJAG00000006586)	mtmr11 (ENSOJAG00000006618)	SV2A (ENSOJAG00000006753)	bola1 (ENSOJAG00000006881) #21	nr2f5 (ENSOJAG00000006892) #22	ENSOJAG00000006929	ENSOJAG00000006970 ##24	rpz6 (ENSOJAG00000006991) #25	ENSOJAG00000006999 ##24	rpz4 (ENSOJAG00000007006) #28	ENSOJAG00000007015 ##24	rpz4 (ENSOJAG00000007029) #28	rpz5 (ENSOJAG00000007033) #27	rpz4 (ENSOJAG00000007049) #28	ENSOJAG00000007066
Indian medaka	MODERN SPECIES	33	ENSOMEG00000020764	dnase2 (ENSOMEG00000020788)	rgl2 (ENSOMEG00000020962)	ENSOMEG00000021059	ENSOMEG00000021082	SYNGAP1 (ENSOMEG00000021229)	smg5 (ENSOMEG00000021330)	PAQR6 (ENSOMEG00000021407)	ntrk1 (ENSOMEG00000021500)	rbm8a (ENSOMEG00000021533)	ENSOMEG00000021547	otud7b (ENSOMEG00000021584)	mtmr11 (ENSOMEG00000021623)	SV2A (ENSOMEG00000021649)	bola1 (ENSOMEG00000021673) #21	nr2f5 (ENSOMEG00000021700) #22	ENSOMEG00000021729	rpz2 (ENSOMEG00000021748) ##24	rpz6 (ENSOMEG00000021778) #25	rpz4 (ENSOMEG00000021789) #28	ENSOMEG00000021805 ##24	ENSOMEG00000021812	ENSOMEG00000021821	rpz4 (ENSOMEG00000021837) #28	rpz5 (ENSOMEG00000021850) #27	rpz4 (ENSOMEG00000021860) #28	ENSOMEG00000021868	col28a1b (ENSOMEG00000000580)	ENSOMEG00000021991	ENSOMEG00000022039	septin7b (ENSOMEG00000022069)
Oryzias_a	ANCESTRAL SPECIES	37	ENSGT00940000175842	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00510000048783.a	ENSGT00940000165143.a.b.g.a.a.a ##24	ENSGT00390000008158.b.b.a.b #25	ENSGT00940000165143.a.b.g.a.b ##24	ENSGT00390000008158.b.b.a.a.f.b #28	ENSGT00940000165143.a.b.g.b ##24	ENSGT00390000008158.b.b.a.a.f.a #28	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a.e #28	ENSGT00390000009313	ENSGT00950000183165.b.a.e.a	ENSGT01090000260131.d	ENSGT00390000001883	ENSGT00940000154222.d.a
Japanese Medaka HdrR	MODERN SPECIES	7	ENSORLG00000022607	dnase2 (ENSORLG00000016180)	rgl2 (ENSORLG00000016196)	ENSORLG00000016201	SYNGAP1 (ENSORLG00000016229)	smg5 (ENSORLG00000016239)	PAQR6 (ENSORLG00000016244)	ntrk1 (ENSORLG00000023848)	afp4 (ENSORLG00000016252)	rbm8a (ENSORLG00000016263)	otud7b (ENSORLG00000016275)	mtmr11 (ENSORLG00000016284)	ENSORLG00000030365	SV2A (ENSORLG00000016295)	bola1 (ENSORLG00000016299) #21	nr2f5 (ENSORLG00000024314) #22	ENSORLG00000016323	ENSORLG00000028778 ##24	ENSORLG00000029395 ##24	ENSORLG00000026123	rpz6 (ENSORLG00000025794) #25	ENSORLG00000026172 ##24	ENSORLG00000026443 #28	ENSORLG00000024164	ENSORLG00000023075 ##24	ENSORLG00000016330 #28	rpz5 (ENSORLG00000016332) #27	rpz4 (ENSORLG00000016333) #28	ENSORLG00000016336	ENSORLG00000016348	ENSORLG00000023131
Chinese medaka	MODERN SPECIES	1244	TAP1 (ENSOSIG00000013202)	ENSOSIG00000013200	pbx2 (ENSOSIG00000013197)	ENSOSIG00000013193	dnase2 (ENSOSIG00000013192)	rgl2 (ENSOSIG00000013189)	ENSOSIG00000013187	SYNGAP1 (ENSOSIG00000013041)	smg5 (ENSOSIG00000013022)	PAQR6 (ENSOSIG00000013020)	afp4 (ENSOSIG00000013018)	otud7b (ENSOSIG00000013015)	mtmr11 (ENSOSIG00000013010)	SV2A (ENSOSIG00000012528)	bola1 (ENSOSIG00000012510) #21	nr2f5 (ENSOSIG00000012505) #22	ENSOSIG00000012500 #23	ENSOSIG00000012497 ##24	rpz6 (ENSOSIG00000012493) #25	ENSOSIG00000012491 ##24	rpz4 (ENSOSIG00000012490) #28	ENSOSIG00000012487 ##24	rpz4 (ENSOSIG00000012485) #28	rpz5 (ENSOSIG00000012482) #27	rpz4 (ENSOSIG00000012480) #28	ENSOSIG00000012479	ENSOSIG00000012447	ENSOSIG00000012445	septin7b (ENSOSIG00000012438)	ENSOSIG00000012424	ENSOSIG00000012420
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B	ENSGT00940000170682	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00510000051675.h.b.b ##30	ENSGT00510000051675.h.b.a ##30	ENSGT00510000051675.g #29	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #32	ENSGT00940000158230.b.a #33	ENSGT00940000165149 #34	ENSGT00940000166523 #35
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B	ENSGT00940000170682	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00510000051675.h.b.a ##30	ENSGT00510000051675.h.b.b ##30	ENSGT00510000051675.g.c.a #29	ENSGT00510000051675.h.a #30	ENSGT00510000051675.g.c.b.a #29	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #32	ENSGT00940000158230.b.a #33
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B	ENSGT00940000170682	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00940000164178.s.b	ENSGT00510000051675.g.d #29	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #32	ENSGT00940000158230.b.a #33	ENSGT00940000165149 #34	ENSGT00940000166523 #35	ENSGT00940000157244.a.b #36
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B	ENSGT00940000170682	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00940000164178.s.b	ENSGT00940000164178.s.a	ENSGT00510000051675.h.b.b ##30	ENSGT00510000051675.h.b.a ##30	ENSGT00510000051675.g.c.a #29	ENSGT00510000051675.g.c.b.a #29	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #32
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00940000164178.s.b	ENSGT00940000164178.s.a	ENSGT00510000051675.h.b.b ##30	ENSGT00510000051675.h.b.a ##30	ENSGT00510000051675.g.c.a #29	ENSGT00510000051675.g.c.b.a #29	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #32	ENSGT00940000158230.b.a #33
Haplochromini_A	ANCESTRAL SPECIES	27	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00940000164178.s.b	ENSGT00940000164178.s.a	ENSGT00510000051675.h.b.b ##30	ENSGT00510000051675.g.c.a #29	ENSGT00510000051675.g.c.b.b #29	ENSGT00510000051675.g.c.b.a #29	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #32	ENSGT00940000158230.b.a #33
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00940000166527	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00940000170682	ENSGT00940000167095.B	ENSGT00510000049239.b.b #23	ENSGT00940000165143.a.a #24	ENSGT00390000008158.b.b.a.b #25	ENSGT00390000008158.b.a #27	ENSGT00390000008158.b.b.a.a #28	ENSGT00940000164178.s.b	ENSGT00940000164178.s.a	ENSGT00510000051675.h.b.b ##30	ENSGT00510000051675.g.c.a #29	ENSGT00510000051675.g.c.b.b #29	ENSGT00510000051675.g.c.b.a #29	ENSGT00390000010118.c.a.a	ENSGT00390000006100 #32
Eastern happy	MODERN SPECIES	2	pbx2 (ENSACLG00000008881)	ENSACLG00000008899	dnase2 (ENSACLG00000008911)	rgl2 (ENSACLG00000008918)	PHF1 (ENSACLG00000008933)	SYNGAP1 (ENSACLG00000008961)	smg5 (ENSACLG00000009311)	PAQR6 (ENSACLG00000009375)	ntrk1 (ENSACLG00000009587)	rbm8a (ENSACLG00000009627)	otud7b (ENSACLG00000009638)	mtmr11 (ENSACLG00000009660)	ENSACLG00000009694	SV2A (ENSACLG00000009697)	bola1 (ENSACLG00000009710) #21	nr2f5 (ENSACLG00000009719) #22	ENSACLG00000009726	ENSACLG00000009737	rpz (ENSACLG00000009741) #24	rpz6 (ENSACLG00000009746) #25	rpz5 (ENSACLG00000009751) #27	rpz4 (ENSACLG00000009754) #28	ENSACLG00000009764	ENSACLG00000010177	ENSACLG00000010200 ##30	ENSACLG00000010211 #29	ENSACLG00000010218 #29	ENSACLG00000010229 #29	zgc:174938 (ENSACLG00000010243)	lamtor2 (ENSACLG00000010245) #32	rab25b (ENSACLG00000010251) #33
Zebra mbuna	MODERN SPECIES	1093	ATP2C1 (ENSMZEG00005016819)	PIK3R4 (ENSMZEG00005016803)	ENSMZEG00005016796	ENSMZEG00005016792	COL6A6 (ENSMZEG00005016769)	ENSMZEG00005016569	smg5 (ENSMZEG00005016543)	PAQR6 (ENSMZEG00005016526)	ntrk1 (ENSMZEG00005016495)	rbm8a (ENSMZEG00005016453)	otud7b (ENSMZEG00005016426)	mtmr11 (ENSMZEG00005016405)	ENSMZEG00005016395	SV2A (ENSMZEG00005016369)	bola1 (ENSMZEG00005016360) #21	nr2f5 (ENSMZEG00005016355) #22	ENSMZEG00005016349 #23	rpz (ENSMZEG00005016345) #24	rpz6 (ENSMZEG00005016342) #25	rpz5 (ENSMZEG00005016335) #27	rpz4 (ENSMZEG00005016332) #28	ENSMZEG00005016322	nr1d2a (ENSMZEG00005016315)	ube2e1 (ENSMZEG00005016310)	ube2e2 (ENSMZEG00005016306)	ENSMZEG00005016299	ZNF385D (ENSMZEG00005016295)	rab5ab (ENSMZEG00005016286)	efhb (ENSMZEG00005016283)	si:dkey-82o10.4 (ENSMZEG00005016280)	ENSMZEG00005016275
P. nyererei	MODERN SPECIES	433	pbx2 (ENSPNYG00000012906)	ENSPNYG00000012935	dnase2 (ENSPNYG00000012955)	rgl2 (ENSPNYG00000012979)	PHF1 (ENSPNYG00000013037)	SYNGAP1 (ENSPNYG00000013123)	smg5 (ENSPNYG00000013397)	PAQR6 (ENSPNYG00000013500)	ntrk1 (ENSPNYG00000013517)	rbm8a (ENSPNYG00000013564)	otud7b (ENSPNYG00000013585)	mtmr11 (ENSPNYG00000013609)	ENSPNYG00000013644	SV2A (ENSPNYG00000013663)	bola1 (ENSPNYG00000013704) #21	nr2f5 (ENSPNYG00000013716) #22	ENSPNYG00000013734 #23	ENSPNYG00000013752	rpz (ENSPNYG00000013763) #24	rpz6 (ENSPNYG00000013769) #25	rpz5 (ENSPNYG00000013781) #27	rpz4 (ENSPNYG00000013784) #28	ENSPNYG00000013791	ENSPNYG00000013812
Burton s mouthbrooder	MODERN SPECIES	327	pbx2 (ENSHBUG00000008278)	ENSHBUG00000001065	dnase2 (ENSHBUG00000008304)	rgl2 (ENSHBUG00000008416)	ENSHBUG00000008432	SYNGAP1 (ENSHBUG00000008524)	smg5 (ENSHBUG00000008654)	PAQR6 (ENSHBUG00000000217)	ntrk1 (ENSHBUG00000008795)	rbm8a (ENSHBUG00000008827)	otud7b (ENSHBUG00000008841)	mtmr11 (ENSHBUG00000008921)	ENSHBUG00000008944	SV2A (ENSHBUG00000009012)	bola1 (ENSHBUG00000009032) #21	nr2f5 (ENSHBUG00000009044) #22	ENSHBUG00000009063 #23	ENSHBUG00000009075	rpz (ENSHBUG00000009083) #24	rpz6 (ENSHBUG00000009089) #25	rpz5 (ENSHBUG00000009100) #27	rpz4 (ENSHBUG00000009111) #28	ENSHBUG00000009120	ENSHBUG00000000231	ENSHBUG00000009212	ENSHBUG00000009223 ##30	ENSHBUG00000009235 ##30	ENSHBUG00000009248 #29	ENSHBUG00000009259 #29	zgc:174938 (ENSHBUG00000009267)	lamtor2 (ENSHBUG00000009286) #32
Nile tilapia	MODERN SPECIES	2	her7 (ENSONIG00000032325)	pbx2 (ENSONIG00000008651)	dnase2 (ENSONIG00000008649)	rgl2 (ENSONIG00000008644)	ENSONIG00000033348	SYNGAP1 (ENSONIG00000008635)	smg5 (ENSONIG00000008632)	PAQR6 (ENSONIG00000008626)	ntrk1 (ENSONIG00000008622)	rbm8a (ENSONIG00000008608)	otud7b (ENSONIG00000008603)	mtmr11 (ENSONIG00000008602)	SV2A (ENSONIG00000008598)	ENSONIG00000033471	bola1 (ENSONIG00000033709) #21	nr2f5 (ENSONIG00000029562) #22	ENSONIG00000008593 #23	ENSONIG00000022659	rpz (ENSONIG00000021082) #24	rpz6 (ENSONIG00000008592) #25	rpz4 (ENSONIG00000037493) #28	ENSONIG00000008588	ENSONIG00000028945	ENSONIG00000008585	ENSONIG00000030458	ENSONIG00000034333	ENSONIG00000031928	ENSONIG00000028408	ENSONIG00000038383	ENSONIG00000034714	zgc:171704 (ENSONIG00000002152)
Midas cichlid	MODERN SPECIES	872										rbm8a (ENSACIG00000017678)	otud7b (ENSACIG00000017648)	ENSACIG00000017642	mtmr11 (ENSACIG00000017613)	SV2A (ENSACIG00000017594)	bola1 (ENSACIG00000017566) #21	nr2f5 (ENSACIG00000017556) #22	ENSACIG00000017542	rpz (ENSACIG00000017536) #24	rpz6 (ENSACIG00000017530) #25	rpz5 (ENSACIG00000017523) #27	ENSACIG00000017516	rpz4 (ENSACIG00000017512) #28	ENSACIG00000017497 ##30	ENSACIG00000017475 #29	ENSACIG00000017450 #29	zgc:174938 (ENSACIG00000017433)	lamtor2 (ENSACIG00000017426) #32	rab25b (ENSACIG00000017414) #33	rab11al (ENSACIG00000017403) #34	ENSACIG00000017394 #35	lmna (ENSACIG00000017374) #36
Pomacentridae	ANCESTRAL SPECIES	25	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030	ENSGT00390000016199.a
Pomacentridae_A	ANCESTRAL SPECIES	16	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00940000166061.b	ENSGT00390000002634.a.e	ENSGT00940000167370	ENSGT00950000183180.a.b	ENSGT00940000158438.n	ENSGT00940000154566	ENSGT00940000160567	ENSGT00940000159412	ENSGT00760000119652	ENSGT00730000111185.eb	ENSGT00940000159172	ENSGT00940000160276	ENSGT00650000094861	ENSGT00950000182940.b.a.b.a.a	ENSGT00510000048165 #21	ENSGT00940000165753 #22	ENSGT00510000049239.b.b #23	ENSGT00940000167095.B	ENSGT00950000183190.a.a.b.d	ENSGT00940000155779.a.a.k	ENSGT00940000155779.a.a.l	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828	ENSGT00940000169242	ENSGT00550000075030
Clown anemonefish	MODERN SPECIES	1796							ntrk1 (ENSAOCG00000023857)	afp4 (ENSAOCG00000023870)	ENSAOCG00000023879	rbm8a (ENSAOCG00000023887)	otud7b (ENSAOCG00000023897)	mtmr11 (ENSAOCG00000023938)	ENSAOCG00000023946	SV2A (ENSAOCG00000023959)	bola1 (ENSAOCG00000023969) #21	nr2f5 (ENSAOCG00000023977) #22
Orange clownfish	MODERN SPECIES	21	ENSAPEG00000023227	dnase2 (ENSAPEG00000023208)	rgl2 (ENSAPEG00000023146)	PHF1 (ENSAPEG00000023049)	SYNGAP1 (ENSAPEG00000023032)	smg5 (ENSAPEG00000022949)	PAQR6 (ENSAPEG00000022918)	ntrk1 (ENSAPEG00000022877)	afp4 (ENSAPEG00000022859)	rbm8a (ENSAPEG00000022847)	otud7b (ENSAPEG00000022828)	mtmr11 (ENSAPEG00000022797)	ENSAPEG00000022792	SV2A (ENSAPEG00000022757)	bola1 (ENSAPEG00000022655) #21	nr2f5 (ENSAPEG00000022639) #22	ENSAPEG00000022616 #23	ENSAPEG00000022594	ENSAPEG00000022575	ENSAPEG00000022563	ENSAPEG00000022546	dhx16 (ENSAPEG00000022508)	rnf183 (ENSAPEG00000022495)	mgat1a (ENSAPEG00000022450)	sh3bp5la (ENSAPEG00000022428)	ENSAPEG00000022418	GABBR1 (ENSAPEG00000022372)	tnfb (ENSAPEG00000022358)	ENSAPEG00000022349	ENSAPEG00000022341	ENSAPEG00000022323
Spiny chromis	MODERN SPECIES	86	ENSAPOG00000010047	sel1l (ENSAPOG00000009984)	ENSAPOG00000009952	fkbp6 (ENSAPOG00000009934)	ENSAPOG00000009908	ENSAPOG00000009882	CLEC18A (ENSAPOG00000009846)	ntrk1 (ENSAPOG00000009792)	afp4 (ENSAPOG00000009768)	rbm8a (ENSAPOG00000009727)	otud7b (ENSAPOG00000009679)	mtmr11 (ENSAPOG00000009570)	ENSAPOG00000009490	SV2A (ENSAPOG00000009474)	bola1 (ENSAPOG00000000262) #21	nr2f5 (ENSAPOG00000009372) #22	ENSAPOG00000009350	ENSAPOG00000009331	ENSAPOG00000009275
Bicolor damselfish	MODERN SPECIES	458							ntrk1 (ENSSPAG00000012074)	ENSSPAG00000012164	afp4 (ENSSPAG00000012172)	rbm8a (ENSSPAG00000012181)	otud7b (ENSSPAG00000012196)	mtmr11 (ENSSPAG00000012227)	ENSSPAG00000012272	SV2A (ENSSPAG00000012284)	bola1 (ENSSPAG00000012313) #21	nr2f5 (ENSSPAG00000012324) #22	ENSSPAG00000012342 #23	ENSSPAG00000012362	ppt2a.2 (ENSSPAG00000012385)	dhx16 (ENSSPAG00000012416)	rnf183 (ENSSPAG00000012532)	mgat1a (ENSSPAG00000012552)	sh3bp5la (ENSSPAG00000012567)	ENSSPAG00000012571	ENSSPAG00000012594	tnfb (ENSSPAG00000012619)	ENSSPAG00000012635	ENSSPAG00000012646	glrx3 (ENSSPAG00000012656)	bag6 (ENSSPAG00000012678)	tspan13a (ENSSPAG00000012698)