Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00530000063604.A #9	ENSGT00940000153956.b #10	ENSGT00940000158630 #11	ENSGT00390000015583 #12	ENSGT00940000155032 #13	ENSGT00390000015287.h #14	ENSGT00950000182926.b.d.c.a.j #15	ENSGT00390000013106 #16	ENSGT00390000007081.a	ENSGT00940000157331 #17	ENSGT00940000157322.a #18	ENSGT00940000154965.A #19	ENSGT00940000162611.a	ENSGT00390000008787.b #20	ENSGT00940000155493 #21	ENSGT00940000160572 #22	ENSGT00390000009395 #23	ENSGT00940000158584 #24	ENSGT00940000155715 #25	ENSGT00940000162006 #26	ENSGT00940000156981 #28	ENSGT00940000156590 #29	ENSGT01100000263542.C #30	ENSGT00570000079101.a.a #31	ENSGT00500000044903 #32	ENSGT00940000158658 #33	ENSGT00940000155525 #34	ENSGT00940000154299.e.b #35	ENSGT00940000162913.a.b #36	ENSGT00940000162913.a.a #37	ENSGT00740000115593
Hystricomorpha_b	ANCESTRAL SPECIES	14	ENSGT00530000063604.A #9	ENSGT00940000153956.b #10	ENSGT00940000158630 #11	ENSGT00390000015583 #12	ENSGT00940000155032 #13	ENSGT00390000015287.h #14	ENSGT00950000182926.b.d.c.a.j #15	ENSGT00390000013106 #16	ENSGT00390000007081.a	ENSGT00940000157331 #17	ENSGT00940000157322.a #18	ENSGT00940000154965.A #19	ENSGT00940000162611.a	ENSGT00390000008787.b #20	ENSGT00940000155493 #21	ENSGT00940000160572 #22	ENSGT00390000009395 #23	ENSGT00940000158584 #24	ENSGT00940000155715 #25	ENSGT00940000162006 #26	ENSGT00940000156981 #28	ENSGT00940000156590 #29	ENSGT01100000263542.C #30	ENSGT00570000079101.a.a #31	ENSGT00500000044903 #32	ENSGT00940000158658 #33	ENSGT00940000155525 #34	ENSGT00940000154299.e.b #35	ENSGT00940000162913.a.b #36	ENSGT00940000162913.a.a #37	ENSGT00740000115593
Long-tailed chinchilla	MODERN SPECIES	214	PI4K2A (ENSCLAG00000001867) #7	MORN4 (ENSCLAG00000001852) #8	HOGA1 (ENSCLAG00000002513) #9	ANKRD2 (ENSCLAG00000002245) #10	UBTD1 (ENSCLAG00000002195) #11	MMS19 (ENSCLAG00000002928) #12	ZDHHC16 (ENSCLAG00000002570) #13	EXOSC1 (ENSCLAG00000002463) #14	ENSCLAG00000002369 #15	RRP12 (ENSCLAG00000003753) #16	ARHGAP19 (ENSCLAG00000002574) #17	SLIT1 (ENSCLAG00000009153) #18	LCOR (ENSCLAG00000008402) #19	PIK3AP1 (ENSCLAG00000002443) #20	TM9SF3 (ENSCLAG00000002078) #21	TLL2 (ENSCLAG00000007122) #22	OPALIN (ENSCLAG00000006654) #23	DNTT (ENSCLAG00000006186) #24	BLNK (ENSCLAG00000005498) #25	ZNF518A (ENSCLAG00000017653) #26	ENSCLAG00000004870 #27	CCNJ (ENSCLAG00000003191) #28	CC2D2B (ENSCLAG00000002936) #29	ENTPD1 (ENSCLAG00000002693) #30	TCTN3 (ENSCLAG00000002407) #31	ALDH18A1 (ENSCLAG00000001841) #32	SORBS1 (ENSCLAG00000003089) #33	PDLIM1 (ENSCLAG00000002692) #34	ENSCLAG00000003305 #35	ENSCLAG00000004211 #36	ENSCLAG00000003682 #37
Degu	MODERN SPECIES	51	UBTD1 (ENSODEG00000015973) #11	MMS19 (ENSODEG00000016062) #12	ZDHHC16 (ENSODEG00000017409) #13	EXOSC1 (ENSODEG00000016709) #14	RRP12 (ENSODEG00000016439) #16	FRAT2 (ENSODEG00000015971)	ENSODEG00000020346	ARHGAP19 (ENSODEG00000016291) #17	SLIT1 (ENSODEG00000015756) #18	LCOR (ENSODEG00000016196) #19	ENSODEG00000016073	ENSODEG00000020358	ENSODEG00000015947	PIK3AP1 (ENSODEG00000016826) #20	TM9SF3 (ENSODEG00000016318) #21	TLL2 (ENSODEG00000016117) #22	OPALIN (ENSODEG00000015705) #23	DNTT (ENSODEG00000016304) #24	BLNK (ENSODEG00000016754) #25	ENSODEG00000015777	CCNJ (ENSODEG00000016657) #28	CC2D2B (ENSODEG00000015499) #29	ENSODEG00000016353	ENTPD1 (ENSODEG00000017035) #30	TCTN3 (ENSODEG00000015591) #31	ALDH18A1 (ENSODEG00000015796) #32	ENSODEG00000015731	SORBS1 (ENSODEG00000015885) #33	ENSODEG00000015364 #34	ENSODEG00000015808 #35	ENSODEG00000015492 #35
Guinea pig	MODERN SPECIES	1	HOGA1 (ENSCPOG00000004555) #9	ANKRD2 (ENSCPOG00000035324) #10	UBTD1 (ENSCPOG00000033582) #11	MMS19 (ENSCPOG00000006715) #12	ZDHHC16 (ENSCPOG00000006710) #13	EXOSC1 (ENSCPOG00000001173) #14	PGAM1 (ENSCPOG00000034665) ##15	RRP12 (ENSCPOG00000004215) #16	FRAT2 (ENSCPOG00000000139)	ARHGAP19 (ENSCPOG00000021474) #17	SLIT1 (ENSCPOG00000005743) #18	LCOR (ENSCPOG00000035033) #19	ENSCPOG00000005739	PIK3AP1 (ENSCPOG00000012888) #20	TM9SF3 (ENSCPOG00000002320) #21	TLL2 (ENSCPOG00000000539) #22	ENSCPOG00000034213 #23	DNTT (ENSCPOG00000002370) #24	BLNK (ENSCPOG00000012667) #25	ZNF518A (ENSCPOG00000006322) #26	CCNJ (ENSCPOG00000001476) #28	ENTPD1 (ENSCPOG00000003603) #30	TCTN3 (ENSCPOG00000021974) #31	ALDH18A1 (ENSCPOG00000000179) #32	SORBS1 (ENSCPOG00000002884) #33	PDLIM1 (ENSCPOG00000002869) #34	ENSCPOG00000009684 ##35	ENSCPOG00000030861	ENSCPOG00000025048	BTC (ENSCPOG00000026188)	AREG (ENSCPOG00000025893)