Cichlidae	ANCESTRAL SPECIES	5	ENSGT00940000165631 #7	ENSGT00940000157180.a #8	ENSGT00730000113054 #9	ENSGT00940000155040.a	ENSGT00950000182990.a.a.a.b.g.b #11	ENSGT00950000182990.a.a.a.b.h #12	ENSGT00950000182990.a.a.a.b.g.a #13	ENSGT00940000160990 #14	ENSGT00940000153899.a.b #15	ENSGT00530000063626.a #16	ENSGT00390000010089 #17	ENSGT00390000018587.f #18	ENSGT00440000033504.A #19	ENSGT00940000165330 #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000157180.a #8	ENSGT00730000113054 #9	ENSGT00940000155040.a	ENSGT00940000164030 #10	ENSGT00950000182990.a.a.a.b.g.b #11	ENSGT00950000182990.a.a.a.b.h #12	ENSGT00950000182990.a.a.a.b.g.a #13	ENSGT00940000160990 #14	ENSGT00940000153899.a.b #15	ENSGT00530000063626.a #16	ENSGT00390000010089 #17	ENSGT00390000018587.f #18	ENSGT00440000033504.A #19	ENSGT00940000165330 #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o.c #30	ENSGT00940000155837.o.d ##30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000157180.a #8	ENSGT00730000113054 #9	ENSGT00940000155040.a	ENSGT00940000164030 #10	ENSGT00950000182990.a.a.a.b.g.b #11	ENSGT00950000182990.a.a.a.b.h #12	ENSGT00950000182990.a.a.a.b.g.a #13	ENSGT00940000160990 #14	ENSGT00940000153899.a.b #15	ENSGT00530000063626.a #16	ENSGT00390000010089 #17	ENSGT00390000018587.f #18	ENSGT00440000033504.A #19	ENSGT00940000165330 #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454.k.a ##25	ENSGT00510000048454.l #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o.c #30	ENSGT00940000155837.o.d ##30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000165631 #7	ENSGT00940000157180.a #8	ENSGT00730000113054 #9	ENSGT00940000164030 #10	ENSGT00950000182990.a.a.a.b.g.b #11	ENSGT00950000182990.a.a.a.b.h #12	ENSGT00950000182990.a.a.a.b.g.a #13	ENSGT00940000160990 #14	ENSGT00940000153899.a.b #15	ENSGT00530000063626.a #16	ENSGT00390000010089 #17	ENSGT00390000018587.f #18	ENSGT00440000033504.A #19	ENSGT00940000165330 #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454.l #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o.c #30	ENSGT00940000155837.o.d ##30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00940000165631 #7	ENSGT00940000157180.a #8	ENSGT00730000113054 #9	ENSGT00940000155040.a	ENSGT00950000182990.a.a.a.b.g.b #11	ENSGT00950000182990.a.a.a.b.h #12	ENSGT00950000182990.a.a.a.b.g.a #13	ENSGT00940000160990 #14	ENSGT00940000153899.a.b #15	ENSGT00530000063626.a #16	ENSGT00390000010089 #17	ENSGT00390000018587.f #18	ENSGT00440000033504.A #19	ENSGT00940000165330 #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454.l #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o.c #30	ENSGT00940000155837.o.d ##30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36
P. nyererei	MODERN SPECIES	330	ENSPNYG00000015430 #7	SYT7 (ENSPNYG00000015370) #8	ENSPNYG00000015333 #9	ENSPNYG00000015325 #10	fads2 (ENSPNYG00000015298) #11	fads2 (ENSPNYG00000015265) #12	fads2 (ENSPNYG00000015246) #13	EPS8L2 (ENSPNYG00000015228) #14	ENSPNYG00000015211 #15	MYRF (ENSPNYG00000015151) #16	tmem258 (ENSPNYG00000015138) #17	tmem138 (ENSPNYG00000015119) #18	cracr2b (ENSPNYG00000015090) #19	ENSPNYG00000015078 #20	cd151 (ENSPNYG00000015046) #21	gatd1 (ENSPNYG00000015031) #22	chid1 (ENSPNYG00000015021) #23	ighmbp2 (ENSPNYG00000015003) #24	ENSPNYG00000014991 #25	rapsn (ENSPNYG00000014981) #26	kbtbd4 (ENSPNYG00000014971) #27	ENSPNYG00000014956 #28	ddb2 (ENSPNYG00000014944) #29	kif23 (ENSPNYG00000014871) #30	TLE3 (ENSPNYG00000014824) #31	morf4l1 (ENSPNYG00000014764) #32	PIAS1 (ENSPNYG00000014701) #33	skor1b (ENSPNYG00000014672) #34	zgc:162898 (ENSPNYG00000014663) #35	iqch (ENSPNYG00000014565) #36	aagab (ENSPNYG00000014514) #37
Haplochromini_B	ANCESTRAL SPECIES	28	ENSGT00940000165631 #7	ENSGT00940000157180.a #8	ENSGT00730000113054 #9	ENSGT00940000155040.a	ENSGT00950000182990.a.a.a.b.g.b #11	ENSGT00950000182990.a.a.a.b.h #12	ENSGT00950000182990.a.a.a.b.g.a #13	ENSGT00940000160990 #14	ENSGT00940000153899.a.b #15	ENSGT00530000063626.a #16	ENSGT00390000010089 #17	ENSGT00390000018587.f #18	ENSGT00440000033504.A #19	ENSGT00940000165330 #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454.l #25	ENSGT00510000048454.k.b ##25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o.c #30	ENSGT00940000155837.o.d ##30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35
Zebra mbuna	MODERN SPECIES	1110	ENSMZEG00005001205 #7	SYT7 (ENSMZEG00005001147) #8	ENSMZEG00005001113 #9	ENSMZEG00005001088 #10	fads2 (ENSMZEG00005001044) #11	fads2 (ENSMZEG00005000998) #12	fads2 (ENSMZEG00005000978) #13	EPS8L2 (ENSMZEG00005000939) #14	ENSMZEG00005000926 #15	MYRF (ENSMZEG00005000876) #16	tmem258 (ENSMZEG00005000860) #17	tmem138 (ENSMZEG00005000840) #18	ENSMZEG00005000810 #20	cracr2b (ENSMZEG00005000762) #19	cd151 (ENSMZEG00005000697) #21	gatd1 (ENSMZEG00005000688) #22	chid1 (ENSMZEG00005000679) #23	ighmbp2 (ENSMZEG00005000665) #24	ENSMZEG00005000649 ##25	ENSMZEG00005000628 ##25	ENSMZEG00005000614	rapsn (ENSMZEG00005000597) #26	kbtbd4 (ENSMZEG00005000506) #27	ENSMZEG00005000486 #28	ddb2 (ENSMZEG00005000480) #29	kif23 (ENSMZEG00005000318) #30	TLE3 (ENSMZEG00005000148) #31	morf4l1 (ENSMZEG00005000059) #32	PIAS1 (ENSMZEG00005022706) #33	skor1b (ENSMZEG00005022702) #34	zgc:162898 (ENSMZEG00005022698) #35
Eastern happy	MODERN SPECIES	19	ENSACLG00000012572	PNPLA2 (ENSACLG00000012639)	ENSACLG00000012689	SYT7 (ENSACLG00000012704) #8	ENSACLG00000012771 #9	LRRC10B (ENSACLG00000012791)	fads2 (ENSACLG00000012796) #11	fads2 (ENSACLG00000013528) #13	EPS8L2 (ENSACLG00000013596) #14	ENSACLG00000013697 #15	MYRF (ENSACLG00000013712) #16	tmem138 (ENSACLG00000013863) #18	tmem258 (ENSACLG00000013893) #17	cracr2b (ENSACLG00000013916) #19	cd151 (ENSACLG00000014011) #21	gatd1 (ENSACLG00000014084) #22	chid1 (ENSACLG00000014108) #23	ighmbp2 (ENSACLG00000014140) #24	ENSACLG00000014155 #25	ENSACLG00000014161 ##25	rapsn (ENSACLG00000014172) #26	kbtbd4 (ENSACLG00000014220) #27	ddb2 (ENSACLG00000014238) #29	ENSACLG00000014281 #28	kif23 (ENSACLG00000014311) #30	kif23 (ENSACLG00000014717) ##30	TLE3 (ENSACLG00000014741) #31	morf4l1 (ENSACLG00000014807) #32	PIAS1 (ENSACLG00000014895) #33	skor1b (ENSACLG00000014916) #34	zgc:162898 (ENSACLG00000014936) #35
Burton s mouthbrooder	MODERN SPECIES	588	ENSHBUG00000018957 #7	SYT7 (ENSHBUG00000018904) #8	ENSHBUG00000018879 #9	ENSHBUG00000018811 #10	fads2 (ENSHBUG00000018800) #11	ENSHBUG00000018757 #12	fads2 (ENSHBUG00000018734) #13	EPS8L2 (ENSHBUG00000018704) #14	ENSHBUG00000018660 #15	MYRF (ENSHBUG00000018627) #16	tmem258 (ENSHBUG00000000551) #17	tmem138 (ENSHBUG00000018486) #18	cracr2b (ENSHBUG00000018460) #19	ENSHBUG00000018426 #20	cd151 (ENSHBUG00000018414) #21	gatd1 (ENSHBUG00000000544) #22	chid1 (ENSHBUG00000018330) #23	ighmbp2 (ENSHBUG00000018318) #24	ENSHBUG00000018301 ##25	ENSHBUG00000018290 ##25	rapsn (ENSHBUG00000018276) #26	kbtbd4 (ENSHBUG00000018269) #27	ENSHBUG00000018262 #28	ddb2 (ENSHBUG00000018250) #29	kif23 (ENSHBUG00000018203) #30	tle3a (ENSHBUG00000017866) #31	morf4l1 (ENSHBUG00000017810) #32	PIAS1 (ENSHBUG00000017743) #33	skor1b (ENSHBUG00000017726) #34	zgc:162898 (ENSHBUG00000017718) #35	iqch (ENSHBUG00000017702) #36
Lyretail cichlid	MODERN SPECIES	305	ENSNBRG00000014340 #7	SYT7 (ENSNBRG00000014377) #8	ENSNBRG00000014406 #9	LRRC10B (ENSNBRG00000014434)	fads2 (ENSNBRG00000014455) #11	fads2 (ENSNBRG00000014481) #12	fads2 (ENSNBRG00000014513) #13	EPS8L2 (ENSNBRG00000014524) #14	ENSNBRG00000014538 #15	MYRF (ENSNBRG00000014569) #16	tmem258 (ENSNBRG00000014671) #17	tmem138 (ENSNBRG00000014683) #18	cracr2b (ENSNBRG00000014711) #19	ENSNBRG00000014771 #20	cd151 (ENSNBRG00000014786) #21	gatd1 (ENSNBRG00000014810) #22	chid1 (ENSNBRG00000014830) #23	ighmbp2 (ENSNBRG00000014911) #24	ENSNBRG00000014925 ##25	ENSNBRG00000014940 ##25	ENSNBRG00000014952 #25	rapsn (ENSNBRG00000014965) #26	kbtbd4 (ENSNBRG00000014991) #27	ENSNBRG00000015089 #28	ddb2 (ENSNBRG00000015103) #29	kif23 (ENSNBRG00000015135) #30	TLE3 (ENSNBRG00000015223) #31	morf4l1 (ENSNBRG00000015273) #32	PIAS1 (ENSNBRG00000015347) #33	skor1b (ENSNBRG00000015564) #34	zgc:162898 (ENSNBRG00000015586) #35
Nile tilapia	MODERN SPECIES	19	PNPLA2 (ENSONIG00000015563)	ENSONIG00000015558	ENSONIG00000015550 #7	SYT7 (ENSONIG00000015545) #8	ENSONIG00000015543 #9	ENSONIG00000037275 #10	fads2 (ENSONIG00000029964) #12	EPS8L2 (ENSONIG00000015525) #14	ENSONIG00000034850 #15	MYRF (ENSONIG00000015523) #16	tmem258 (ENSONIG00000038450) #17	tmem138 (ENSONIG00000038979) #18	cracr2b (ENSONIG00000015522) #19	ENSONIG00000038196	cd151 (ENSONIG00000015519) #21	gatd1 (ENSONIG00000015518) #22	chid1 (ENSONIG00000015510) #23	ighmbp2 (ENSONIG00000015506) #24	rapsn (ENSONIG00000015500) #26	kbtbd4 (ENSONIG00000015498) #27	ddb2 (ENSONIG00000015496) #29	kif23 (ENSONIG00000015489) #30	kif23 (ENSONIG00000040865) ##30	ENSONIG00000039253	TLE3 (ENSONIG00000015480) #31	morf4l1 (ENSONIG00000015475) #32	PIAS1 (ENSONIG00000015473) #33	skor1b (ENSONIG00000041762) #34	zgc:162898 (ENSONIG00000015471) #35	iqch (ENSONIG00000015469) #36	aagab (ENSONIG00000039374) #37
Midas cichlid	MODERN SPECIES	385	ENSACIG00000005178 #7	SYT7 (ENSACIG00000005152) #8	ENSACIG00000005126 #9	LRRC10B (ENSACIG00000005108)	fads2 (ENSACIG00000005083) #11	fads2 (ENSACIG00000005033) #12	fads2 (ENSACIG00000005013) #13	EPS8L2 (ENSACIG00000004982) #14	ENSACIG00000004969 #15	MYRF (ENSACIG00000004939) #16	tmem258 (ENSACIG00000004929) #17	tmem138 (ENSACIG00000004920) #18	cracr2b (ENSACIG00000004899) #19	ENSACIG00000004872 #20	cd151 (ENSACIG00000004857) #21	gatd1 (ENSACIG00000004770) #22	chid1 (ENSACIG00000004701) #23	ighmbp2 (ENSACIG00000004670) #24	ENSACIG00000004665 #25	ENSACIG00000004657 #25	rapsn (ENSACIG00000004645) #26	kbtbd4 (ENSACIG00000004631) #27	ddb2 (ENSACIG00000004603) #29	kif23 (ENSACIG00000004552) #30	TLE3 (ENSACIG00000004505) #31	morf4l1 (ENSACIG00000004474) #32	PIAS1 (ENSACIG00000004315) #33	skor1b (ENSACIG00000004288) #34	zgc:162898 (ENSACIG00000004275) #35	iqch (ENSACIG00000004210) #36	aagab (ENSACIG00000004078) #37