Euteleostomi	ANCESTRAL SPECIES	586														ENSGT00940000158758	ENSGT00390000017790	ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16
Actinopterygii	ANCESTRAL SPECIES	612																ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16
Neopterygii	ANCESTRAL SPECIES	372													ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760 #21	ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160434	ENSGT00390000012069 #23
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Clupeocephala	ANCESTRAL SPECIES	69	ENSGT00940000165631	ENSGT00940000157180.b ##9	ENSGT01060000248781	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37	ENSGT00940000153499.b.b.d.a.b	ENSGT00940000158146.b	ENSGT00390000010331	ENSGT00940000157369.a
Euteleosteomorpha	ANCESTRAL SPECIES	1	ENSGT00940000166188	ENSGT00940000165631	ENSGT01060000248781	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37	ENSGT00940000153499.b.b.d.a.b	ENSGT00940000158146.b	ENSGT00390000010331	ENSGT00940000157369.a
Acanthomorphata	ANCESTRAL SPECIES	4	ENSGT00940000172147	ENSGT00940000165631	ENSGT01060000248781	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT01030000234519.e.b.l ##31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT00940000166188	ENSGT00940000165631	ENSGT01060000248781	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00940000166188	ENSGT00940000165631	ENSGT01060000248781	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00940000166188	ENSGT00940000165631	ENSGT01060000248781	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT00940000166188	ENSGT00940000165631	ENSGT01060000248781	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Atherinomorphae	ANCESTRAL SPECIES	5	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b.e.a.a ##12	ENSGT00950000182990.a.a.a.b.f #12	ENSGT00950000182990.a.a.a.b.e.b ##12	ENSGT00950000182990.a.a.a.b.e.a.b #14	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT01060000249026 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Cyprinodontiformes	ANCESTRAL SPECIES	6	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b.f.a #12	ENSGT00940000164030	ENSGT00950000182990.a.a.a.b.e.b ##12	ENSGT00950000182990.a.a.a.b.e.a.b #14	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT01060000249026 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT01060000248781	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b.f.a #12	ENSGT00950000182990.a.a.a.b.f.b #13	ENSGT00950000182990.a.a.a.b.e.a.b #14	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT01060000249026 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b.f.a #12	ENSGT00950000182990.a.a.a.b.f.b #13	ENSGT00950000182990.a.a.a.b.e.a.b #14	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT01060000249026 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Poecilia	ANCESTRAL SPECIES	5	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b.f.a #12	ENSGT00950000182990.a.a.a.b.f.b #13	ENSGT00950000182990.a.a.a.b.e.a.b #14	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT01060000249026 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
NAME_6	ANCESTRAL SPECIES	38			ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b.f.a #12	ENSGT00950000182990.a.a.a.b.f.b #13	ENSGT00950000182990.a.a.a.b.e.a.b #14	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT01060000249026 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Amazon molly	MODERN SPECIES	332	ENSPFOG00000011534 #10	LRRC10B (ENSPFOG00000019896) #11	SYT7 (ENSPFOG00000011512) #9	ENSPFOG00000023078 #10	ENSPFOG00000019895	fads2 (ENSPFOG00000011321) #12	fads2 (ENSPFOG00000011279) #14	fads2 (ENSPFOG00000022618) #13	EPS8L2 (ENSPFOG00000011145) #15	ENSPFOG00000011140 #16	MYRF (ENSPFOG00000011050) #17	tmem258 (ENSPFOG00000011043) #18	tmem138 (ENSPFOG00000011042) #19	cracr2b (ENSPFOG00000010947) #20	cd151 (ENSPFOG00000010899) #21	gatd1 (ENSPFOG00000010873) #22	chid1 (ENSPFOG00000010791) #23	ighmbp2 (ENSPFOG00000010607) #24	ENSPFOG00000010570 #25	rapsn (ENSPFOG00000010493) #26	kbtbd4 (ENSPFOG00000010466) #27	ddb2 (ENSPFOG00000010390) #29	kif23 (ENSPFOG00000009992) #30	TLE3 (ENSPFOG00000009535) #31	morf4l1 (ENSPFOG00000009311) #32	PIAS1 (ENSPFOG00000009110) #33	skor1b (ENSPFOG00000009041) #34	zgc:162898 (ENSPFOG00000009031) #35	iqch (ENSPFOG00000008947) #36	aagab (ENSPFOG00000008893) #37	smad3b (ENSPFOG00000008802)
Sailfin molly	MODERN SPECIES	765				SYT7 (ENSPLAG00000000965) #9	LRRC10B (ENSPLAG00000000966) #11	fads2 (ENSPLAG00000001222) #12	fads2 (ENSPLAG00000003271) #13	fads2 (ENSPLAG00000003690) #14	EPS8L2 (ENSPLAG00000000064) #15	ENSPLAG00000003710 #16	MYRF (ENSPLAG00000003738) #17	tmem258 (ENSPLAG00000003750) #18	tmem138 (ENSPLAG00000003754) #19	cracr2b (ENSPLAG00000003773) #20	cd151 (ENSPLAG00000003806) #21	gatd1 (ENSPLAG00000003815) #22	chid1 (ENSPLAG00000003865) #23	ighmbp2 (ENSPLAG00000003917) #24	rapsn (ENSPLAG00000003980) #26	kbtbd4 (ENSPLAG00000003991) #27	ENSPLAG00000004001 #28	ddb2 (ENSPLAG00000004011) #29	kif23 (ENSPLAG00000004119) #30
Guppy	MODERN SPECIES	458	ENSPREG00000011780	ENSPREG00000011745	SYT7 (ENSPREG00000011699) #9	LRRC10B (ENSPREG00000011692) #11	fads2 (ENSPREG00000011675) #12	fads2 (ENSPREG00000011644) #13	fads2 (ENSPREG00000011600) #14	EPS8L2 (ENSPREG00000011537) #15	ENSPREG00000011518 #16	MYRF (ENSPREG00000011496) #17	tmem258 (ENSPREG00000011474) #18	tmem138 (ENSPREG00000011458) #19	cracr2b (ENSPREG00000011392) #20	ENSPREG00000011372	cd151 (ENSPREG00000011363) #21	gatd1 (ENSPREG00000011346) #22	chid1 (ENSPREG00000011264) #23	ighmbp2 (ENSPREG00000011223) #24	ENSPREG00000011207	rapsn (ENSPREG00000011191) #26	kbtbd4 (ENSPREG00000011179) #27	ENSPREG00000011171 #28	ddb2 (ENSPREG00000011139) #29	kif23 (ENSPREG00000010939) #30	TLE3 (ENSPREG00000010877) #31	morf4l1 (ENSPREG00000010818) #32	PIAS1 (ENSPREG00000010768) #33	skor1b (ENSPREG00000010750) #34	zgc:162898 (ENSPREG00000010732) #35	iqch (ENSPREG00000010718) #36	aagab (ENSPREG00000010705) #37
Platyfish	MODERN SPECIES	11	ENSXMAG00000003828	SYT7 (ENSXMAG00000003814) #9	ENSXMAG00000003813 #10	LRRC10B (ENSXMAG00000003811) #11	fads2 (ENSXMAG00000003781) #12	fads2 (ENSXMAG00000003777) #13	fads2 (ENSXMAG00000003775) #14	EPS8L2 (ENSXMAG00000003760) #15	ENSXMAG00000003758 #16	MYRF (ENSXMAG00000003748) #17	tmem258 (ENSXMAG00000026506) #18	tmem138 (ENSXMAG00000024333) #19	cracr2b (ENSXMAG00000003737) #20	ENSXMAG00000003735	cd151 (ENSXMAG00000003730) #21	gatd1 (ENSXMAG00000028803) #22	chid1 (ENSXMAG00000003714) #23	ighmbp2 (ENSXMAG00000003705) #24	ENSXMAG00000026603 #25	ENSXMAG00000000599	kbtbd4 (ENSXMAG00000003696) #27	ENSXMAG00000023989 #28	ddb2 (ENSXMAG00000003694) #29	kif23 (ENSXMAG00000003667) #30	TLE3 (ENSXMAG00000003621) #31	morf4l1 (ENSXMAG00000003604) #32	PIAS1 (ENSXMAG00000003583) #33	skor1b (ENSXMAG00000003579) #34	zgc:162898 (ENSXMAG00000022123) #35	iqch (ENSXMAG00000003568) #36	aagab (ENSXMAG00000003564) #37
NAME_4	ANCESTRAL SPECIES	114	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b.e.a.a ##12	ENSGT00950000182990.a.a.a.b.f.a #12	ENSGT00950000182990.a.a.a.b.f.b #13	ENSGT00950000182990.a.a.a.b.e.a.b #14	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT01060000249026 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Mummichog	MODERN SPECIES	282							ENSFHEG00000020995 #13	fads2 (ENSFHEG00000021035) #14	EPS8L2 (ENSFHEG00000021045) #15	ENSFHEG00000021053 #16	tmem258 (ENSFHEG00000021059) #18	tmem138 (ENSFHEG00000000829) #19	cracr2b (ENSFHEG00000021107) #20	ENSFHEG00000021119	cd151 (ENSFHEG00000021129) #21	gatd1 (ENSFHEG00000021159) #22	chid1 (ENSFHEG00000021172) #23	ighmbp2 (ENSFHEG00000021211) #24	ENSFHEG00000021215 #25	rapsn (ENSFHEG00000021237) #26	ENSFHEG00000021254	kbtbd4 (ENSFHEG00000021264) #27	ENSFHEG00000021282 #28	ddb2 (ENSFHEG00000021285) #29	kif23 (ENSFHEG00000021477) #30	TLE3 (ENSFHEG00000021536) #31	morf4l1 (ENSFHEG00000021591) #32	ENSFHEG00000021615 #33	skor1b (ENSFHEG00000021633) #34	zgc:162898 (ENSFHEG00000021645) #35	iqch (ENSFHEG00000021713) #36
Sheepshead minnow	MODERN SPECIES	838														cdkn1bb (ENSCVAG00000007978)	yars2 (ENSCVAG00000007972)	gatd1 (ENSCVAG00000007939) #22	chid1 (ENSCVAG00000007917) #23	ighmbp2 (ENSCVAG00000007876) #24	ENSCVAG00000007846 #25	rapsn (ENSCVAG00000007842) #26	kbtbd4 (ENSCVAG00000007811) #27	ENSCVAG00000007797 #28	ddb2 (ENSCVAG00000007786) #29	kif23 (ENSCVAG00000007774) #30	TLE3 (ENSCVAG00000007613) #31
Aplocheiloidei	ANCESTRAL SPECIES	1	ENSGT00940000156120.b.n	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b.f.a #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT01060000249026 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Turquoise killifish	MODERN SPECIES	1622	CABZ01068600.1 (ENSNFUG00015024698)	PNPLA2 (ENSNFUG00015004933)	PIDD (ENSNFUG00015004987)	ENSNFUG00015005102	ENSNFUG00015005606 #9	LRRC10B (ENSNFUG00015005622) #11	ENSNFUG00015005625	fads2 (ENSNFUG00015005732) #12	EPS8L2 (ENSNFUG00015006490) #15	ENSNFUG00015006531 #16	MYRF (ENSNFUG00015006540) #17	tmem258 (ENSNFUG00015006554) #18	TMEM138 (ENSNFUG00015006556) #19	cracr2b (ENSNFUG00015006558) #20	cd151 (ENSNFUG00015006568) #21	PDDC1 (ENSNFUG00015006573) #22	chid1 (ENSNFUG00015006583) #23	ighmbp2 (ENSNFUG00015006609) #24	ENSNFUG00015006797 #25	rapsn (ENSNFUG00015006800) #26	KBTBD4 (ENSNFUG00015006805) #27	ENSNFUG00015006807 #28	ddb2 (ENSNFUG00015006812) #29	kif23 (ENSNFUG00015006836) #30	TLE3 (ENSNFUG00015007251) #31	smad3b (ENSNFUG00015007897)	morf4l1 (ENSNFUG00015008050) #32	PIAS1 (ENSNFUG00015008137) #33	skor1b (ENSNFUG00015008209) #34	zgc:162898 (ENSNFUG00015008213) #35	iqch (ENSNFUG00015008218) #36
Mangrove rivulus	MODERN SPECIES	6	SYT7 (ENSKMAG00000020794) #9	ENSKMAG00000020779	ENSKMAG00000020769 #10	ENSKMAG00000020757	ENSKMAG00000020742 ##12	ENSKMAG00000020728 ##12	fads2 (ENSKMAG00000020665) #14	EPS8L2 (ENSKMAG00000020614) #15	ENSKMAG00000020599 #16	MYRF (ENSKMAG00000020511) #17	tmem258 (ENSKMAG00000020479) #18	tmem138 (ENSKMAG00000020465) #19	cracr2b (ENSKMAG00000020446) #20	ENSKMAG00000020429	cd151 (ENSKMAG00000020396) #21	gatd1 (ENSKMAG00000020360) #22	chid1 (ENSKMAG00000020332) #23	ighmbp2 (ENSKMAG00000020284) #24	ENSKMAG00000020264 #25	rapsn (ENSKMAG00000020239) #26	kbtbd4 (ENSKMAG00000020215) #27	ENSKMAG00000020196 #28	ddb2 (ENSKMAG00000020178) #29	kif23 (ENSKMAG00000020065) #30	TLE3 (ENSKMAG00000019987) #31	morf4l1 (ENSKMAG00000019932) #32	PIAS1 (ENSKMAG00000019888) #33	skor1b (ENSKMAG00000019852) #34	zgc:162898 (ENSKMAG00000019840) #35	iqch (ENSKMAG00000019782) #36	aagab (ENSKMAG00000019751) #37
Oryzias	ANCESTRAL SPECIES	16	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b.e.a.a.a ##12	ENSGT00950000182990.a.a.a.b.e.a.a.b ##12	ENSGT00950000182990.a.a.a.b.e.a.b #14	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT01060000249026 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Oryzias_a	ANCESTRAL SPECIES	1	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b.e.a.a.a ##12	ENSGT00950000182990.a.a.a.b.e.a.a.b ##12	ENSGT00950000182990.a.a.a.b.e.a.b #14	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT01060000249026 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000007218 #37	ENSGT00940000153499.b.b.d.a.b
Chinese medaka	MODERN SPECIES	766	pgghg (ENSOSIG00000011895)	ENSOSIG00000011890	PNPLA2 (ENSOSIG00000011493)	ENSOSIG00000011486	ENSOSIG00000011322	SYT7 (ENSOSIG00000011313) #9	LRRC10B (ENSOSIG00000011312) #11	fads2 (ENSOSIG00000010733) ##12	EPS8L2 (ENSOSIG00000010732) #15	ENSOSIG00000010729 #16	MYRF (ENSOSIG00000010627) #17	tmem258 (ENSOSIG00000010624) #18	tmem138 (ENSOSIG00000010623) #19	cracr2b (ENSOSIG00000010620) #20	cd151 (ENSOSIG00000010618) #21	gatd1 (ENSOSIG00000010617) #22	chid1 (ENSOSIG00000010614) #23	ENSOSIG00000010607 #25	rapsn (ENSOSIG00000010602) #26	kbtbd4 (ENSOSIG00000010600) #27	ENSOSIG00000010597 #28	ddb2 (ENSOSIG00000010596) #29	kif23 (ENSOSIG00000006428) #30	TLE3 (ENSOSIG00000001248) #31	morf4l1 (ENSOSIG00000001015) #32	PIAS1 (ENSOSIG00000000776) #33	skor1b (ENSOSIG00000000726) #34	zgc:162898 (ENSOSIG00000000720) #35	smad6b (ENSOSIG00000022510)	smad6b (ENSOSIG00000022504)	snapc5 (ENSOSIG00000022501)
Japanese Medaka HdrR	MODERN SPECIES	20	PNPLA2 (ENSORLG00000006274)	ENSORLG00000006292	ENSORLG00000006312	ENSORLG00000006333 #9	LRRC10B (ENSORLG00000006339) #11	fads2 (ENSORLG00000006353) ##12	fads2 (ENSORLG00000006357) ##12	fads2 (ENSORLG00000006358) #14	EPS8L2 (ENSORLG00000006429) #15	TMEM80 (ENSORLG00000006444) #16	MYRF (ENSORLG00000006459) #17	tmem138 (ENSORLG00000024177) #19	tmem258 (ENSORLG00000026488) #18	cracr2b (ENSORLG00000006469) #20	cd151 (ENSORLG00000006486) #21	gatd1 (ENSORLG00000006504) #22	chid1 (ENSORLG00000006537) #23	ighmbp2 (ENSORLG00000006561) #24	ENSORLG00000006610 #25	rapsn (ENSORLG00000006635) #26	kbtbd4 (ENSORLG00000006648) #27	ENSORLG00000029307 #28	ddb2 (ENSORLG00000006657) #29	kif23 (ENSORLG00000006689) #30	TLE3 (ENSORLG00000006700) #31	morf4l1 (ENSORLG00000025632) #32	PIAS1 (ENSORLG00000006728) #33	skor1b (ENSORLG00000006736) #34	zgc:162898 (ENSORLG00000006741) #35	aagab (ENSORLG00000006754) #37	smad3b (ENSORLG00000006803)
Oryzias_b	ANCESTRAL SPECIES		ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b.e.a.a.a ##12	ENSGT00950000182990.a.a.a.b.e.a.a.b ##12	ENSGT00950000182990.a.a.a.b.e.b ##12	ENSGT00950000182990.a.a.a.b.e.a.b #14	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT01060000249026 #28	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Indian medaka	MODERN SPECIES	15	ENSOMEG00000018357	ENSOMEG00000018413	SYT7 (ENSOMEG00000018574) #9	LRRC10B (ENSOMEG00000018615) #11	fads2 (ENSOMEG00000018759) ##12	ENSOMEG00000018793 ##12	fads2 (ENSOMEG00000018843) #14	EPS8L2 (ENSOMEG00000018951) #15	TMEM80 (ENSOMEG00000018986) #16	MYRF (ENSOMEG00000019000) #17	tmem258 (ENSOMEG00000019012) #18	tmem138 (ENSOMEG00000019039) #19	cracr2b (ENSOMEG00000019073) #20	ENSOMEG00000019083	cd151 (ENSOMEG00000019118) #21	gatd1 (ENSOMEG00000000503) #22	chid1 (ENSOMEG00000019221) #23	ighmbp2 (ENSOMEG00000019296) #24	ENSOMEG00000019319 #25	rapsn (ENSOMEG00000019340) #26	kbtbd4 (ENSOMEG00000019350) #27	ENSOMEG00000019359 #28	ddb2 (ENSOMEG00000019402) #29	kif23 (ENSOMEG00000019673) #30	TLE3 (ENSOMEG00000019731) #31	morf4l1 (ENSOMEG00000019799) #32	PIAS1 (ENSOMEG00000019860) #33	skor1b (ENSOMEG00000019886) #34	zgc:162898 (ENSOMEG00000019899) #35	iqch (ENSOMEG00000019948) #36	aagab (ENSOMEG00000019971) #37
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Pomacentridae	ANCESTRAL SPECIES	1	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Pomacentridae_A	ANCESTRAL SPECIES	9	ENSGT00940000156120.b.n	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b.i #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Amphiprion	ANCESTRAL SPECIES	4	ENSGT00940000156120.b.n	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b.i #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Orange clownfish	MODERN SPECIES	18	ENSAPEG00000022250	PNPLA2 (ENSAPEG00000022221)	ENSAPEG00000022185	ENSAPEG00000022157	SYT7 (ENSAPEG00000022098) #9	ENSAPEG00000022057 #10	LRRC10B (ENSAPEG00000022019) #11	fads2 (ENSAPEG00000021986) #12	EPS8L2 (ENSAPEG00000021958) #15	TMEM80 (ENSAPEG00000021945) #16	MYRF (ENSAPEG00000021907) #17	tmem258 (ENSAPEG00000021891) #18	tmem138 (ENSAPEG00000021876) #19	cracr2b (ENSAPEG00000021843) #20	cd151 (ENSAPEG00000021808) #21	gatd1 (ENSAPEG00000021777) #22	chid1 (ENSAPEG00000021760) #23	ighmbp2 (ENSAPEG00000021713) #24	ENSAPEG00000021695 #25	ENSAPEG00000021685	rapsn (ENSAPEG00000021656) #26	kbtbd4 (ENSAPEG00000021632) #27	ENSAPEG00000021620	ddb2 (ENSAPEG00000021600) #29	kif23 (ENSAPEG00000021465) #30	TLE3 (ENSAPEG00000021401) #31	morf4l1 (ENSAPEG00000021329) #32	PIAS1 (ENSAPEG00000021254) #33	skor1b (ENSAPEG00000021226) #34	zgc:162898 (ENSAPEG00000021209) #35	iqch (ENSAPEG00000021177) #36
Clown anemonefish	MODERN SPECIES	2136						ENSAOCG00000002462 #10	ENSAOCG00000019667	fads2 (ENSAOCG00000019644) #12	EPS8L2 (ENSAOCG00000019612) #15	TMEM80 (ENSAOCG00000019589) #16	MYRF (ENSAOCG00000019567) #17	tmem258 (ENSAOCG00000019514) #18	tmem138 (ENSAOCG00000019506) #19	cracr2b (ENSAOCG00000019493) #20	cd151 (ENSAOCG00000019471) #21	gatd1 (ENSAOCG00000019443) #22	chid1 (ENSAOCG00000019409) #23	ighmbp2 (ENSAOCG00000019390) #24	ENSAOCG00000019371 #25	rapsn (ENSAOCG00000002000) #26	kbtbd4 (ENSAOCG00000019324) #27	ddb2 (ENSAOCG00000001392) #29	ENSAOCG00000019285
Spiny chromis	MODERN SPECIES	6								EPS8L2 (ENSAPOG00000009817) #15	ENSAPOG00000009797 #12	ENSAPOG00000009770 #16	MYRF (ENSAPOG00000009738) #17	tmem258 (ENSAPOG00000000907) #18	tmem138 (ENSAPOG00000009670) #19	cracr2b (ENSAPOG00000009642) #20	cd151 (ENSAPOG00000000272) #21	gatd1 (ENSAPOG00000009447) #22	chid1 (ENSAPOG00000009458) #23	ighmbp2 (ENSAPOG00000009399) #24	ENSAPOG00000009326 #25	rapsn (ENSAPOG00000009316) #26	kbtbd4 (ENSAPOG00000009282) #27	ddb2 (ENSAPOG00000009264) #29	kif23 (ENSAPOG00000009173) #30	TLE3 (ENSAPOG00000009026) #31	morf4l1 (ENSAPOG00000008936) #32	PIAS1 (ENSAPOG00000008862) #33	skor1b (ENSAPOG00000008831) #34	zgc:162898 (ENSAPOG00000008823) #35	iqch (ENSAPOG00000008805) #36	aagab (ENSAPOG00000008748) #37	smad3b (ENSAPOG00000008731)
Bicolor damselfish	MODERN SPECIES	59									ENSSPAG00000011243	MYRF (ENSSPAG00000011265) #17	tmem138 (ENSSPAG00000011292) #19	tmem258 (ENSSPAG00000011312) #18	cracr2b (ENSSPAG00000011328) #20	ENSSPAG00000011353	cd151 (ENSSPAG00000011372) #21	gatd1 (ENSSPAG00000011456) #22	chid1 (ENSSPAG00000011479) #23	ighmbp2 (ENSSPAG00000011541) #24	ENSSPAG00000011597 #25	rapsn (ENSSPAG00000011680) #26	kbtbd4 (ENSSPAG00000011724) #27	ENSSPAG00000011741	ddb2 (ENSSPAG00000011753) #29
Cichlidae	ANCESTRAL SPECIES	5	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b.g.b #12	ENSGT00950000182990.a.a.a.b.h #12	ENSGT00950000182990.a.a.a.b.g.a #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00940000164030	ENSGT00950000182990.a.a.a.b.g.b #12	ENSGT00950000182990.a.a.a.b.h #12	ENSGT00950000182990.a.a.a.b.g.a #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o.c #30	ENSGT00940000155837.o.d #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00940000164030	ENSGT00950000182990.a.a.a.b.g.b #12	ENSGT00950000182990.a.a.a.b.h #12	ENSGT00950000182990.a.a.a.b.g.a #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454.k.a #25	ENSGT00510000048454.l #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o.c #30	ENSGT00940000155837.o.d #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000164030	ENSGT00950000182990.a.a.a.b.g.b #12	ENSGT00950000182990.a.a.a.b.h #12	ENSGT00950000182990.a.a.a.b.g.a #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454.l #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o.c #30	ENSGT00940000155837.o.d #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36
Burton s mouthbrooder	MODERN SPECIES	588	ENSHBUG00000018957	SYT7 (ENSHBUG00000018904) #9	ENSHBUG00000018879 #10	ENSHBUG00000018811	fads2 (ENSHBUG00000018800) #12	ENSHBUG00000018757 #12	fads2 (ENSHBUG00000018734) #12	EPS8L2 (ENSHBUG00000018704) #15	ENSHBUG00000018660 #16	MYRF (ENSHBUG00000018627) #17	tmem258 (ENSHBUG00000000551) #18	tmem138 (ENSHBUG00000018486) #19	cracr2b (ENSHBUG00000018460) #20	ENSHBUG00000018426	cd151 (ENSHBUG00000018414) #21	gatd1 (ENSHBUG00000000544) #22	chid1 (ENSHBUG00000018330) #23	ighmbp2 (ENSHBUG00000018318) #24	ENSHBUG00000018301 #25	ENSHBUG00000018290 #25	rapsn (ENSHBUG00000018276) #26	kbtbd4 (ENSHBUG00000018269) #27	ENSHBUG00000018262	ddb2 (ENSHBUG00000018250) #29	kif23 (ENSHBUG00000018203) #30	tle3a (ENSHBUG00000017866) #31	morf4l1 (ENSHBUG00000017810) #32	PIAS1 (ENSHBUG00000017743) #33	skor1b (ENSHBUG00000017726) #34	zgc:162898 (ENSHBUG00000017718) #35	iqch (ENSHBUG00000017702) #36
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b.g.b #12	ENSGT00950000182990.a.a.a.b.h #12	ENSGT00950000182990.a.a.a.b.g.a #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454.l #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o.c #30	ENSGT00940000155837.o.d #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36
Haplochromini_B	ANCESTRAL SPECIES	28	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b.g.b #12	ENSGT00950000182990.a.a.a.b.h #12	ENSGT00950000182990.a.a.a.b.g.a #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454.l #25	ENSGT00510000048454.k.b #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o.c #30	ENSGT00940000155837.o.d #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35
Zebra mbuna	MODERN SPECIES	1110	ENSMZEG00005001205	SYT7 (ENSMZEG00005001147) #9	ENSMZEG00005001113 #10	ENSMZEG00005001088	fads2 (ENSMZEG00005001044) #12	fads2 (ENSMZEG00005000998) #12	fads2 (ENSMZEG00005000978) #12	EPS8L2 (ENSMZEG00005000939) #15	ENSMZEG00005000926 #16	MYRF (ENSMZEG00005000876) #17	tmem258 (ENSMZEG00005000860) #18	tmem138 (ENSMZEG00005000840) #19	ENSMZEG00005000810	cracr2b (ENSMZEG00005000762) #20	cd151 (ENSMZEG00005000697) #21	gatd1 (ENSMZEG00005000688) #22	chid1 (ENSMZEG00005000679) #23	ighmbp2 (ENSMZEG00005000665) #24	ENSMZEG00005000649 #25	ENSMZEG00005000628 #25	ENSMZEG00005000614	rapsn (ENSMZEG00005000597) #26	kbtbd4 (ENSMZEG00005000506) #27	ENSMZEG00005000486	ddb2 (ENSMZEG00005000480) #29	kif23 (ENSMZEG00005000318) #30	TLE3 (ENSMZEG00005000148) #31	morf4l1 (ENSMZEG00005000059) #32	PIAS1 (ENSMZEG00005022706) #33	skor1b (ENSMZEG00005022702) #34	zgc:162898 (ENSMZEG00005022698) #35
Eastern happy	MODERN SPECIES	19	ENSACLG00000012572	PNPLA2 (ENSACLG00000012639)	ENSACLG00000012689	SYT7 (ENSACLG00000012704) #9	ENSACLG00000012771 #10	LRRC10B (ENSACLG00000012791) #11	fads2 (ENSACLG00000012796) #12	fads2 (ENSACLG00000013528) #12	EPS8L2 (ENSACLG00000013596) #15	ENSACLG00000013697 #16	MYRF (ENSACLG00000013712) #17	tmem138 (ENSACLG00000013863) #19	tmem258 (ENSACLG00000013893) #18	cracr2b (ENSACLG00000013916) #20	cd151 (ENSACLG00000014011) #21	gatd1 (ENSACLG00000014084) #22	chid1 (ENSACLG00000014108) #23	ighmbp2 (ENSACLG00000014140) #24	ENSACLG00000014155 #25	ENSACLG00000014161 #25	rapsn (ENSACLG00000014172) #26	kbtbd4 (ENSACLG00000014220) #27	ddb2 (ENSACLG00000014238) #29	ENSACLG00000014281	kif23 (ENSACLG00000014311) #30	kif23 (ENSACLG00000014717) #30	TLE3 (ENSACLG00000014741) #31	morf4l1 (ENSACLG00000014807) #32	PIAS1 (ENSACLG00000014895) #33	skor1b (ENSACLG00000014916) #34	zgc:162898 (ENSACLG00000014936) #35
P. nyererei	MODERN SPECIES	330	ENSPNYG00000015430	SYT7 (ENSPNYG00000015370) #9	ENSPNYG00000015333 #10	ENSPNYG00000015325	fads2 (ENSPNYG00000015298) #12	fads2 (ENSPNYG00000015265) #12	fads2 (ENSPNYG00000015246) #12	EPS8L2 (ENSPNYG00000015228) #15	ENSPNYG00000015211 #16	MYRF (ENSPNYG00000015151) #17	tmem258 (ENSPNYG00000015138) #18	tmem138 (ENSPNYG00000015119) #19	cracr2b (ENSPNYG00000015090) #20	ENSPNYG00000015078	cd151 (ENSPNYG00000015046) #21	gatd1 (ENSPNYG00000015031) #22	chid1 (ENSPNYG00000015021) #23	ighmbp2 (ENSPNYG00000015003) #24	ENSPNYG00000014991 #25	rapsn (ENSPNYG00000014981) #26	kbtbd4 (ENSPNYG00000014971) #27	ENSPNYG00000014956	ddb2 (ENSPNYG00000014944) #29	kif23 (ENSPNYG00000014871) #30	TLE3 (ENSPNYG00000014824) #31	morf4l1 (ENSPNYG00000014764) #32	PIAS1 (ENSPNYG00000014701) #33	skor1b (ENSPNYG00000014672) #34	zgc:162898 (ENSPNYG00000014663) #35	iqch (ENSPNYG00000014565) #36	aagab (ENSPNYG00000014514) #37
Lyretail cichlid	MODERN SPECIES	305	ENSNBRG00000014340	SYT7 (ENSNBRG00000014377) #9	ENSNBRG00000014406 #10	LRRC10B (ENSNBRG00000014434) #11	fads2 (ENSNBRG00000014455) #12	fads2 (ENSNBRG00000014481) #12	fads2 (ENSNBRG00000014513) #12	EPS8L2 (ENSNBRG00000014524) #15	ENSNBRG00000014538 #16	MYRF (ENSNBRG00000014569) #17	tmem258 (ENSNBRG00000014671) #18	tmem138 (ENSNBRG00000014683) #19	cracr2b (ENSNBRG00000014711) #20	ENSNBRG00000014771	cd151 (ENSNBRG00000014786) #21	gatd1 (ENSNBRG00000014810) #22	chid1 (ENSNBRG00000014830) #23	ighmbp2 (ENSNBRG00000014911) #24	ENSNBRG00000014925 #25	ENSNBRG00000014940 #25	ENSNBRG00000014952 #25	rapsn (ENSNBRG00000014965) #26	kbtbd4 (ENSNBRG00000014991) #27	ENSNBRG00000015089	ddb2 (ENSNBRG00000015103) #29	kif23 (ENSNBRG00000015135) #30	TLE3 (ENSNBRG00000015223) #31	morf4l1 (ENSNBRG00000015273) #32	PIAS1 (ENSNBRG00000015347) #33	skor1b (ENSNBRG00000015564) #34	zgc:162898 (ENSNBRG00000015586) #35
Nile tilapia	MODERN SPECIES	19	PNPLA2 (ENSONIG00000015563)	ENSONIG00000015558	ENSONIG00000015550	SYT7 (ENSONIG00000015545) #9	ENSONIG00000015543 #10	ENSONIG00000037275	fads2 (ENSONIG00000029964) #12	EPS8L2 (ENSONIG00000015525) #15	ENSONIG00000034850 #16	MYRF (ENSONIG00000015523) #17	tmem258 (ENSONIG00000038450) #18	tmem138 (ENSONIG00000038979) #19	cracr2b (ENSONIG00000015522) #20	ENSONIG00000038196	cd151 (ENSONIG00000015519) #21	gatd1 (ENSONIG00000015518) #22	chid1 (ENSONIG00000015510) #23	ighmbp2 (ENSONIG00000015506) #24	rapsn (ENSONIG00000015500) #26	kbtbd4 (ENSONIG00000015498) #27	ddb2 (ENSONIG00000015496) #29	kif23 (ENSONIG00000015489) #30	kif23 (ENSONIG00000040865) #30	ENSONIG00000039253	TLE3 (ENSONIG00000015480) #31	morf4l1 (ENSONIG00000015475) #32	PIAS1 (ENSONIG00000015473) #33	skor1b (ENSONIG00000041762) #34	zgc:162898 (ENSONIG00000015471) #35	iqch (ENSONIG00000015469) #36	aagab (ENSONIG00000039374) #37
Midas cichlid	MODERN SPECIES	385	ENSACIG00000005178	SYT7 (ENSACIG00000005152) #9	ENSACIG00000005126 #10	LRRC10B (ENSACIG00000005108) #11	fads2 (ENSACIG00000005083) #12	fads2 (ENSACIG00000005033) #12	fads2 (ENSACIG00000005013) #12	EPS8L2 (ENSACIG00000004982) #15	ENSACIG00000004969 #16	MYRF (ENSACIG00000004939) #17	tmem258 (ENSACIG00000004929) #18	tmem138 (ENSACIG00000004920) #19	cracr2b (ENSACIG00000004899) #20	ENSACIG00000004872	cd151 (ENSACIG00000004857) #21	gatd1 (ENSACIG00000004770) #22	chid1 (ENSACIG00000004701) #23	ighmbp2 (ENSACIG00000004670) #24	ENSACIG00000004665 #25	ENSACIG00000004657 #25	rapsn (ENSACIG00000004645) #26	kbtbd4 (ENSACIG00000004631) #27	ddb2 (ENSACIG00000004603) #29	kif23 (ENSACIG00000004552) #30	TLE3 (ENSACIG00000004505) #31	morf4l1 (ENSACIG00000004474) #32	PIAS1 (ENSACIG00000004315) #33	skor1b (ENSACIG00000004288) #34	zgc:162898 (ENSACIG00000004275) #35	iqch (ENSACIG00000004210) #36	aagab (ENSACIG00000004078) #37
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Eupercaria	ANCESTRAL SPECIES	6	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o.f #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Tetraodontidae	ANCESTRAL SPECIES	11	ENSGT00390000006297	ENSGT00940000156120.b.n	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00940000164030	ENSGT00940000160990 #15	ENSGT00940000178914	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00940000159701	ENSGT00940000158686	ENSGT00940000154189.B	ENSGT00940000154856.A.a.c.a.b.a.a.a	ENSGT00940000163716.c.a.a.a	ENSGT00940000158293	ENSGT00940000158567	ENSGT00880000138051.a	ENSGT00940000159231	ENSGT00390000000873.a.b	ENSGT00950000183119.b	ENSGT00940000158022	ENSGT00950000183006.B.f.a
Fugu	MODERN SPECIES	21	RAB3IL1 (ENSTRUG00000008336)	ENSTRUG00000007995	ENSTRUG00000007377	PNPLA2 (ENSTRUG00000007064)	ENSTRUG00000006941	ENSTRUG00000006591	SYT7 (ENSTRUG00000006379) #9	ENSTRUG00000006362	EPS8L2 (ENSTRUG00000005541) #15	ENSTRUG00000025727	MYRF (ENSTRUG00000005197) #17	tmem258 (ENSTRUG00000029259) #18	tmem138 (ENSTRUG00000030084) #19	cracr2b (ENSTRUG00000004977) #20	cd151 (ENSTRUG00000004585) #21	gatd1 (ENSTRUG00000023961) #22	chid1 (ENSTRUG00000021123) #23	ighmbp2 (ENSTRUG00000003491) #24	deaf1 (ENSTRUG00000002931)	atp2b1b (ENSTRUG00000001560)	ENSTRUG00000001491	ENSTRUG00000001289	ENSTRUG00000001202	ENSTRUG00000031818	cftr (ENSTRUG00000017143)	asz1 (ENSTRUG00000017140)	wnt2 (ENSTRUG00000017138)	st7 (ENSTRUG00000017133)	capza2 (ENSTRUG00000022465)	met (ENSTRUG00000017114)	cav1 (ENSTRUG00000025224)
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o.f #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Ballan wrasse	MODERN SPECIES	40							ENSLBEG00000013790 #10	LRRC10B (ENSLBEG00000013843) #11	fads2 (ENSLBEG00000013853) #12	EPS8L2 (ENSLBEG00000013915) #15	MYRF (ENSLBEG00000014063) #17	tmem138 (ENSLBEG00000014175) #19	tmem258 (ENSLBEG00000014160) #18	cracr2b (ENSLBEG00000014261) #20	cd151 (ENSLBEG00000014313) #21	gatd1 (ENSLBEG00000014333) #22	chid1 (ENSLBEG00000014374) #23	ighmbp2 (ENSLBEG00000014501) #24	ENSLBEG00000014647	rapsn (ENSLBEG00000014666) #26	kbtbd4 (ENSLBEG00000014698) #27	ENSLBEG00000014710	ddb2 (ENSLBEG00000014759) #29	kif23 (ENSLBEG00000014888) #30	TLE3 (ENSLBEG00000015053) #31	morf4l1 (ENSLBEG00000015124) #32	PIAS1 (ENSLBEG00000015142) #33	skor1b (ENSLBEG00000015181) #34	zgc:162898 (ENSLBEG00000015192) #35	iqch (ENSLBEG00000015224) #36	aagab (ENSLBEG00000015299) #37
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o.f #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Perciformes	ANCESTRAL SPECIES	7	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o.f #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Cottioidei	ANCESTRAL SPECIES	6	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00510000047881 #29	ENSGT00940000155837.o.f #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37	ENSGT00940000153499.b.b.d.a.b
Lumpfish	MODERN SPECIES	21	ENSCLMG00005018515	PNPLA2 (ENSCLMG00005018516)	ENSCLMG00005018519	ENSCLMG00005018520	SYT7 (ENSCLMG00005018521) #9	ENSCLMG00005018522 #10	LRRC10B (ENSCLMG00005018524) #11	fads2 (ENSCLMG00005018530) #12	EPS8L2 (ENSCLMG00005018543) #15	TMEM80 (ENSCLMG00005018544) #16	MYRF (ENSCLMG00005018545) #17	tmem258 (ENSCLMG00005018546) #18	tmem138 (ENSCLMG00005018547) #19	cracr2b (ENSCLMG00005018549) #20	cd151 (ENSCLMG00005018550) #21	gatd1 (ENSCLMG00005018556) #22	chid1 (ENSCLMG00005018557) #23	ighmbp2 (ENSCLMG00005018566) #24	ENSCLMG00005018573 #25	rapsn (ENSCLMG00005018574) #26	kbtbd4 (ENSCLMG00005018576) #27	ddb2 (ENSCLMG00005018579) #29	kif23 (ENSCLMG00005018591) #30	TLE3 (ENSCLMG00005019055) #31	morf4l1 (ENSCLMG00005019604) #32	PIAS1 (ENSCLMG00005019623) #33	skor1b (ENSCLMG00005019721) #34	zgc:162898 (ENSCLMG00005019722) #35	iqch (ENSCLMG00005019726) #36	aagab (ENSCLMG00005019765) #37	smad3b (ENSCLMG00005019769)
Stickleback	MODERN SPECIES	14	ENSGACG00000005514	ENSGACG00000005509	ENSGACG00000005489	ENSGACG00000005483	SYT7 (ENSGACG00000005468) #9	LRRC10B (ENSGACG00000005464) #11	fads2 (ENSGACG00000005442) #12	ENSGACG00000005440 #15	ENSGACG00000005436 #15	MYRF (ENSGACG00000005416) #17	tmem258 (ENSGACG00000005414) #18	tmem138 (ENSGACG00000005406) #19	cracr2b (ENSGACG00000005399) #20	ENSGACG00000005397	cd151 (ENSGACG00000005365) #21	gatd1 (ENSGACG00000005355) #22	chid1 (ENSGACG00000005331) #23	ighmbp2 (ENSGACG00000005293) #24	rapsn (ENSGACG00000005265) #26	kbtbd4 (ENSGACG00000005255) #27	ddb2 (ENSGACG00000005252) #29	kif23 (ENSGACG00000005226) #30	TLE3 (ENSGACG00000005213) #31	morf4l1 (ENSGACG00000005181) #32	PIAS1 (ENSGACG00000005176) #33	skor1b (ENSGACG00000005171) #34	zgc:162898 (ENSGACG00000005167) #35	iqch (ENSGACG00000005158) #36	aagab (ENSGACG00000005119) #37	smad3b (ENSGACG00000005092)	smad6b (ENSGACG00000005085)
Perciformes_a	ANCESTRAL SPECIES	7	ENSGT00940000156120.b.n	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o.f #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Channel bull blenny	MODERN SPECIES	20	ENSCGOG00000021867	pgghg (ENSCGOG00000021805)	ENSCGOG00000021798	PNPLA2 (ENSCGOG00000021776)	ENSCGOG00000021772	ENSCGOG00000021514	SYT7 (ENSCGOG00000021501) #9	ENSCGOG00000021499 #10	LRRC10B (ENSCGOG00000021497) #11	fads2 (ENSCGOG00000018769) #12	EPS8L2 (ENSCGOG00000018669) #15	tmem258 (ENSCGOG00000018662) #18	tmem138 (ENSCGOG00000018664) #19	cracr2b (ENSCGOG00000018659) #20	cd151 (ENSCGOG00000018619) #21	gatd1 (ENSCGOG00000018608) #22	chid1 (ENSCGOG00000018514) #23	ighmbp2 (ENSCGOG00000018334) #24	rapsn (ENSCGOG00000018322) #26	kbtbd4 (ENSCGOG00000018314) #27	ENSCGOG00000018313	ddb2 (ENSCGOG00000018311) #29	kif23 (ENSCGOG00000017942) #30	TLE3 (ENSCGOG00000017111) #31	morf4l1 (ENSCGOG00000016522) #32	PIAS1 (ENSCGOG00000015764) #33	skor1b (ENSCGOG00000015746) #34	zgc:162898 (ENSCGOG00000015744) #35	iqch (ENSCGOG00000015654) #36	aagab (ENSCGOG00000015616) #37	smad3b (ENSCGOG00000014715)
Pike perch	MODERN SPECIES	6	PNPLA2 (ENSSLUG00000001722)	ENSSLUG00000001706	ENSSLUG00000001553	SYT7 (ENSSLUG00000001451) #9	ENSSLUG00000001437 #10	LRRC10B (ENSSLUG00000001435) #11	fads2 (ENSSLUG00000001370) #12	fads2 (ENSSLUG00000001309) #12	EPS8L2 (ENSSLUG00000001268) #15	ENSSLUG00000001260 #16	MYRF (ENSSLUG00000001227) #17	tmem258 (ENSSLUG00000001211) #18	tmem138 (ENSSLUG00000001207) #19	cracr2b (ENSSLUG00000001204) #20	cd151 (ENSSLUG00000001196) #21	gatd1 (ENSSLUG00000001189) #22	chid1 (ENSSLUG00000001180) #23	ighmbp2 (ENSSLUG00000001171) #24	ENSSLUG00000001166 #25	rapsn (ENSSLUG00000001159) #26	kbtbd4 (ENSSLUG00000001154) #27	ENSSLUG00000001150	ddb2 (ENSSLUG00000001144) #29	kif23 (ENSSLUG00000000973) #30	TLE3 (ENSSLUG00000000698) #31	morf4l1 (ENSSLUG00000000519) #32	PIAS1 (ENSSLUG00000000454) #33	skor1b (ENSSLUG00000000431) #34	zgc:162898 (ENSSLUG00000000425) #35	iqch (ENSSLUG00000000409) #36	aagab (ENSSLUG00000000395) #37
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00940000156120.b.n	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o.f #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Gilthead seabream	MODERN SPECIES	22	ENSSAUG00010016471	PNPLA2 (ENSSAUG00010016463)	ENSSAUG00010016460	ENSSAUG00010016375	SYT7 (ENSSAUG00010016373) #9	ENSSAUG00010016372 #10	LRRC10B (ENSSAUG00010016371) #11	FD6D (ENSSAUG00010015126) #12	EPS8L2 (ENSSAUG00010015102) #15	TMEM80 (ENSSAUG00010015095) #16	MYRF (ENSSAUG00010015083) #17	tmem258 (ENSSAUG00010015079) #18	tmem138 (ENSSAUG00010015077) #19	cracr2b (ENSSAUG00010015071) #20	cd151 (ENSSAUG00010015065) #21	gatd1 (ENSSAUG00010015062) #22	chid1 (ENSSAUG00010014549) #23	ighmbp2 (ENSSAUG00010014523) #24	rapsn (ENSSAUG00010014517) #26	kbtbd4 (ENSSAUG00010014515) #27	ENSSAUG00010014514	ddb2 (ENSSAUG00010014512) #29	kif23 (ENSSAUG00010013254) #30	TLE3 (ENSSAUG00010012732) #31	morf4l1 (ENSSAUG00010011733) #32	kif23 (ENSSAUG00010011708) #30	PIAS1 (ENSSAUG00010011693) #33	skor1b (ENSSAUG00010011689) #34	zgc:162898 (ENSSAUG00010011688) #35	iqch (ENSSAUG00010011685) #36	aagab (ENSSAUG00010011683) #37
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00390000006297	ENSGT00940000156120.b.n	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o.f #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Large yellow croaker	MODERN SPECIES	492	ENSLCRG00005006935	pnpla2 (ENSLCRG00005006936)	ENSLCRG00005006940	ENSLCRG00005006942	SYT7 (ENSLCRG00005007193) #9	ENSLCRG00005007195 #10	ENSLCRG00005007199	fads2 (ENSLCRG00005007206) #12	EPS8L2 (ENSLCRG00005007272) #15	ENSLCRG00005007278	MYRF (ENSLCRG00005007287) #17	tmem258 (ENSLCRG00005007291) #18	tmem138 (ENSLCRG00005007292) #19	cracr2b (ENSLCRG00005007296) #20	cd151 (ENSLCRG00005007302) #21	gatd1 (ENSLCRG00005007306) #22	chid1 (ENSLCRG00005007309) #23	ighmbp2 (ENSLCRG00005007561) #24	ENSLCRG00005007582 #25	rapsn (ENSLCRG00005007583) #26	kbtbd4 (ENSLCRG00005007586) #27	ENSLCRG00005007587	ddb2 (ENSLCRG00005007589) #29	kif23 (ENSLCRG00005007598) #30	TLE3 (ENSLCRG00005007697) #31	morf4l1 (ENSLCRG00005008690) #32	PIAS1 (ENSLCRG00005008812) #33	ENSLCRG00005008944 #33	skor1b (ENSLCRG00005008945) #34	zgc:162898 (ENSLCRG00005008946) #35	iqch (ENSLCRG00005008950) #36
European seabass	MODERN SPECIES	19	pgghg (ENSDLAG00005011841)	ENSDLAG00005031273	ENSDLAG00005011801	ENSDLAG00005011788	ENSDLAG00005011716	ENSDLAG00005011686 #9	ENSDLAG00005011672 #10	ENSDLAG00005034878 #11	fads2 (ENSDLAG00005011077) #12	ENSDLAG00005011013 #15	ENSDLAG00005010790 #17	tmem258 (ENSDLAG00005010777) #18	tmem138 (ENSDLAG00005029817) #19	cracr2b (ENSDLAG00005010763) #20	cd151 (ENSDLAG00005010736) #21	gatd1 (ENSDLAG00005010725) #22	chid1 (ENSDLAG00005010232) #23	ighmbp2 (ENSDLAG00005010154) #24	ENSDLAG00005031626 #25	kbtbd4 (ENSDLAG00005026445) #27	ENSDLAG00005010122	kif23 (ENSDLAG00005007984) #30	ddb2 (ENSDLAG00005010094) #29	ENSDLAG00005006914 #31	morf4l1 (ENSDLAG00005006479) #32	ENSDLAG00005006449	PIAS1 (ENSDLAG00005006027) #33	skor1b (ENSDLAG00005005972) #34	zgc:162898 (ENSDLAG00005031120) #35	aagab (ENSDLAG00005005902) #37	smad3b (ENSDLAG00005005574)
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00940000156120.b.n	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Carangaria	ANCESTRAL SPECIES	6	ENSGT00940000156120.b.n	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT00730000111073	ENSGT00390000006297	ENSGT00940000156120.b.n	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Tongue sole	MODERN SPECIES	16	pgghg (ENSCSEG00000007865)	ENSCSEG00000007858	PNPLA2 (ENSCSEG00000007838)	ENSCSEG00000007822	ENSCSEG00000007788	SYT7 (ENSCSEG00000007750) #9	ENSCSEG00000007738 #10	ENSCSEG00000007733	fads2 (ENSCSEG00000007719) #12	EPS8L2 (ENSCSEG00000007688) #15	MYRF (ENSCSEG00000007663) #17	tmem258 (ENSCSEG00000007655) #18	tmem138 (ENSCSEG00000007639) #19	cracr2b (ENSCSEG00000007618) #20	cd151 (ENSCSEG00000007599) #21	gatd1 (ENSCSEG00000007576) #22	chid1 (ENSCSEG00000007553) #23	ighmbp2 (ENSCSEG00000007513) #24	ENSCSEG00000007385 #25	rapsn (ENSCSEG00000007367) #26	kbtbd4 (ENSCSEG00000007357) #27	ENSCSEG00000007333	ddb2 (ENSCSEG00000007319) #29	kif23 (ENSCSEG00000007240) #30	ENSCSEG00000007234	aagab (ENSCSEG00000007229) #37	iqch (ENSCSEG00000007210) #36	zgc:162898 (ENSCSEG00000007204) #35	skor1b (ENSCSEG00000007194) #34	PIAS1 (ENSCSEG00000007150) #33	morf4l1 (ENSCSEG00000007129) #32
Turbot	MODERN SPECIES	1	pgghg (ENSSMAG00000013294)	ENSSMAG00000013326	ENSSMAG00000013335	ENSSMAG00000013360	ENSSMAG00000030096	ENSSMAG00000013394 #9	ENSSMAG00000013408 #11	fads2 (ENSSMAG00000025027) #12	fads2 (ENSSMAG00000013417) #12	ENSSMAG00000013491 #15	ENSSMAG00000013526 #17	tmem258 (ENSSMAG00000013559) #18	tmem138 (ENSSMAG00000031815) #19	cracr2b (ENSSMAG00000013579) #20	cd151 (ENSSMAG00000013639) #21	gatd1 (ENSSMAG00000013666) #22	chid1 (ENSSMAG00000013674) #23	ighmbp2 (ENSSMAG00000013687) #24	ENSSMAG00000013697 #25	rapsn (ENSSMAG00000013780) #26	kbtbd4 (ENSSMAG00000013783) #27	ENSSMAG00000013793	ddb2 (ENSSMAG00000013800) #29	kif23 (ENSSMAG00000013831) #30	ENSSMAG00000013997 #31	morf4l1 (ENSSMAG00000014185) #32	PIAS1 (ENSSMAG00000014246) #33	skor1b (ENSSMAG00000014267) #34	zgc:162898 (ENSSMAG00000014311) #35	iqch (ENSSMAG00000014326) #36	aagab (ENSSMAG00000014364) #37
Carangaria_A	ANCESTRAL SPECIES		ENSGT00940000156120.b.n	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00940000181062	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36
Barramundi perch	MODERN SPECIES	17	ENSLCAG00010014187	PNPLA2 (ENSLCAG00010014171)	ENSLCAG00010014158	ENSLCAG00010014141	SYT7 (ENSLCAG00010014130) #9	ENSLCAG00010014122 #10	LRRC10B (ENSLCAG00010014116) #11	fads2 (ENSLCAG00010013971) #12	EPS8L2 (ENSLCAG00010013929) #15	MYRF (ENSLCAG00010013920) #17	tmem258 (ENSLCAG00010013917) #18	tmem138 (ENSLCAG00010013915) #19	cracr2b (ENSLCAG00010013911) #20	ENSLCAG00010013910	cd151 (ENSLCAG00010013908) #21	gatd1 (ENSLCAG00010013904) #22	chid1 (ENSLCAG00010013894) #23	ighmbp2 (ENSLCAG00010013871) #24	ENSLCAG00010013858 #25	rapsn (ENSLCAG00010013851) #26	kbtbd4 (ENSLCAG00010013848) #27	ENSLCAG00010013847	ddb2 (ENSLCAG00010013840) #29	kif23 (ENSLCAG00010013211) #30	TLE3 (ENSLCAG00010012751) #31	ENSLCAG00010012673	morf4l1 (ENSLCAG00010012622) #32	PIAS1 (ENSLCAG00010012593) #33	skor1b (ENSLCAG00010012584) #34	zgc:162898 (ENSLCAG00010012578) #35	iqch (ENSLCAG00010012573) #36
Seriola	ANCESTRAL SPECIES	5	ENSGT00390000006297	ENSGT00940000156120.b.n	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00940000181062	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Yellowtail amberjack	MODERN SPECIES	3044	ENSSLDG00000022666	PNPLA2 (ENSSLDG00000022680)	ENSSLDG00000022747	ENSSLDG00000022766	SYT7 (ENSSLDG00000022791) #9	ENSSLDG00000022822	ENSSLDG00000022826 #10	ENSSLDG00000022851	fads2 (ENSSLDG00000022861) #12	EPS8L2 (ENSSLDG00000022901) #15	MYRF (ENSSLDG00000022935) #17	tmem138 (ENSSLDG00000022975) #19	tmem258 (ENSSLDG00000022983) #18	cracr2b (ENSSLDG00000022995) #20	cd151 (ENSSLDG00000023016) #21	gatd1 (ENSSLDG00000023050) #22	chid1 (ENSSLDG00000023101) #23	ighmbp2 (ENSSLDG00000023119) #24	rapsn (ENSSLDG00000023154) #26	kbtbd4 (ENSSLDG00000023182) #27	ddb2 (ENSSLDG00000023204) #29	kif23 (ENSSLDG00000023233) #30	TLE3 (ENSSLDG00000023328) #31	ENSSLDG00000023373	morf4l1 (ENSSLDG00000023383) #32	PIAS1 (ENSSLDG00000023434) #33	skor1b (ENSSLDG00000023468) #34	zgc:162898 (ENSSLDG00000023483) #35	iqch (ENSSLDG00000023494) #36	aagab (ENSSLDG00000023521) #37	smad3b (ENSSLDG00000023534)
Greater amberjack	MODERN SPECIES	86	pgghg (ENSSDUG00000019501)	ENSSDUG00000019380	PNPLA2 (ENSSDUG00000019342)	ENSSDUG00000019313	ENSSDUG00000019246	SYT7 (ENSSDUG00000019231) #9	ENSSDUG00000019180 #10	LRRC10B (ENSSDUG00000019164) #11	fads2 (ENSSDUG00000013849) #12	EPS8L2 (ENSSDUG00000013424) #15	MYRF (ENSSDUG00000013378) #17	tmem258 (ENSSDUG00000013369) #18	tmem138 (ENSSDUG00000013339) #19	cracr2b (ENSSDUG00000013283) #20	cd151 (ENSSDUG00000013251) #21	gatd1 (ENSSDUG00000013236) #22	chid1 (ENSSDUG00000013209) #23	ighmbp2 (ENSSDUG00000013150) #24	ENSSDUG00000013131 #25
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00390000006297	ENSGT00940000156120.b.n	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00390000006297	ENSGT00940000156120.b.n	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00510000047881 #29	ENSGT00940000155837.o #30	ENSGT01030000234519.e.b.k.b #31	ENSGT00950000182965.a.b.a.a #32	ENSGT01030000234539.a.a.b.a.b.a.b #33	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37
Siamese fighting fish	MODERN SPECIES	17	pgghg (ENSBSLG00000000567)	ENSBSLG00000000529	PNPLA2 (ENSBSLG00000000486)	ENSBSLG00000020370	ENSBSLG00000020331	SYT7 (ENSBSLG00000020310) #9	ENSBSLG00000020307 #10	LRRC10B (ENSBSLG00000020305) #11	fads2 (ENSBSLG00000020089) #12	EPS8L2 (ENSBSLG00000020042) #15	MYRF (ENSBSLG00000019955) #17	tmem258 (ENSBSLG00000019935) #18	tmem138 (ENSBSLG00000019927) #19	cracr2b (ENSBSLG00000019850) #20	cd151 (ENSBSLG00000019811) #21	gatd1 (ENSBSLG00000019758) #22	chid1 (ENSBSLG00000019714) #23	ighmbp2 (ENSBSLG00000019655) #24	ENSBSLG00000019652 #25	rapsn (ENSBSLG00000019644) #26	kbtbd4 (ENSBSLG00000019638) #27	ENSBSLG00000019633	ddb2 (ENSBSLG00000019623) #29	kif23 (ENSBSLG00000018655) #30	TLE3 (ENSBSLG00000017067) #31	morf4l1 (ENSBSLG00000016545) #32	PIAS1 (ENSBSLG00000016477) #33	skor1b (ENSBSLG00000016468) #34	zgc:162898 (ENSBSLG00000016466) #35	iqch (ENSBSLG00000016456) #36	aagab (ENSBSLG00000016446) #37
Zig-zag eel	MODERN SPECIES	20	ENSMAMG00000004990	ENSMAMG00000005025	ENSMAMG00000005053	ENSMAMG00000027832	ENSMAMG00000005128 #9	ENSMAMG00000005196 #10	ENSMAMG00000005252 #11	fads2 (ENSMAMG00000005265) #12	ENSMAMG00000005299 #15	ENSMAMG00000005312 #17	tmem258 (ENSMAMG00000024338) #18	ENSMAMG00000026012 #19	tmem138 (ENSMAMG00000005344) #19	cracr2b (ENSMAMG00000005360) #20	cd151 (ENSMAMG00000005397) #21	gatd1 (ENSMAMG00000005425) #22	chid1 (ENSMAMG00000005523) #23	ighmbp2 (ENSMAMG00000005532) #24	rapsn (ENSMAMG00000005567) #26	kbtbd4 (ENSMAMG00000027596) #27	ENSMAMG00000024728	ddb2 (ENSMAMG00000005596) #29	kif23 (ENSMAMG00000005646) #30	ENSMAMG00000005747 #31	morf4l1 (ENSMAMG00000005793) #32	ENSMAMG00000024365	PIAS1 (ENSMAMG00000005844) #33	skor1b (ENSMAMG00000005854) #34	zgc:162898 (ENSMAMG00000005865) #35	iqch (ENSMAMG00000005883) #36	aagab (ENSMAMG00000005930) #37
Tiger tail seahorse	MODERN SPECIES	489	ENSHCOG00000020534	PNPLA2 (ENSHCOG00000020575)	ENSHCOG00000020666	ENSHCOG00000020692	SYT7 (ENSHCOG00000020715) #9	LRRC10B (ENSHCOG00000020723) #11	fads2 (ENSHCOG00000000559) #12	ENSHCOG00000000563 #15	ENSHCOG00000020803 #15	MYRF (ENSHCOG00000020834) #17	tmem258 (ENSHCOG00000020843) #18	tmem138 (ENSHCOG00000020854) #19	cracr2b (ENSHCOG00000020859) #20	ENSHCOG00000020877	cd151 (ENSHCOG00000020911) #21	gatd1 (ENSHCOG00000020920) #22	chid1 (ENSHCOG00000020930) #23
Pinecone sodierfish	MODERN SPECIES	20	ENSMMDG00005021218	PNPLA2 (ENSMMDG00005021225)	ENSMMDG00005021234	ENSMMDG00005021238	SYT7 (ENSMMDG00005021244) #9	ENSMMDG00005021247 #10	LRRC10B (ENSMMDG00005021250) #11	fads2 (ENSMMDG00005021253) #12	EPS8L2 (ENSMMDG00005021267) #15	ENSMMDG00005021334 #16	MYRF (ENSMMDG00005021336) #17	ENSMMDG00005021340	tmem138 (ENSMMDG00005021341) #19	cracr2b (ENSMMDG00005021345) #20	cd151 (ENSMMDG00005004047) #21	gatd1 (ENSMMDG00005004177) #22	chid1 (ENSMMDG00005004213) #23	ighmbp2 (ENSMMDG00005004807) #24	rapsn (ENSMMDG00005004846) #26	kbtbd4 (ENSMMDG00005004850) #27	ENSMMDG00005004856	ddb2 (ENSMMDG00005004863) #29	kif23 (ENSMMDG00005004943) #30	TLE3 (ENSMMDG00005007447) #31	morf4l1 (ENSMMDG00005009517) #32	PIAS1 (ENSMMDG00005009535) #33	skor1b (ENSMMDG00005009562) #34	zgc:162898 (ENSMMDG00005009564) #35	iqch (ENSMMDG00005009565) #36	aagab (ENSMMDG00005009566) #37	smad3b (ENSMMDG00005009590)
Cod	MODERN SPECIES	22	fth1b (ENSGMOG00000018020)	ENSGMOG00000017972	pgghg (ENSGMOG00000017951)	ENSGMOG00000017899	ENSGMOG00000017879	ENSGMOG00000017848	ENSGMOG00000017830	ENSGMOG00000017775 #9	Fadsd6 (ENSGMOG00000017746) #12	ENSGMOG00000017728 #15	ENSGMOG00000032469 #16	tmem258 (ENSGMOG00000017689) #18	tmem138 (ENSGMOG00000032822) #19	cracr2b (ENSGMOG00000017652) #20	cd151 (ENSGMOG00000017632) #21	gatd1 (ENSGMOG00000017617) #22	chid1 (ENSGMOG00000017597) #23	ighmbp2 (ENSGMOG00000017553) #24	rapsn (ENSGMOG00000017544) #26	kbtbd4 (ENSGMOG00000017530) #27	ddb2 (ENSGMOG00000017517) #29	kif23 (ENSGMOG00000017492) #30	morf4l1 (ENSGMOG00000008374) #32	PIAS1 (ENSGMOG00000008372) #33	skor1b (ENSGMOG00000033826) #34	zgc:162898 (ENSGMOG00000008367) #35	aagab (ENSGMOG00000008365) #37	smad3b (ENSGMOG00000029371)	smad6b (ENSGMOG00000008363)	snapc5 (ENSGMOG00000036981)	LCTL (ENSGMOG00000008361)
Protacanthopterygii	ANCESTRAL SPECIES	10	ENSGT00940000166188	ENSGT00940000165631	ENSGT01060000248781	ENSGT00940000157180.b ##9	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00510000048454 #25	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00940000155837.o #30	ENSGT00510000047881 #29	ENSGT00940000158440.g.b #34	ENSGT00390000015942 #35	ENSGT00390000008908 #36	ENSGT00390000007218 #37	ENSGT00940000153499.b.b.d.a.b	ENSGT00940000158146.b.j	ENSGT00390000010331
Salmoninae	ANCESTRAL SPECIES	750																ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00940000155837.o #30	ENSGT01030000234539.a.a.b.a.b.a.b.c.a #33	ENSGT00940000158440.g.b.g.a #34	ENSGT00390000015942 #35
Salmoninae_a	ANCESTRAL SPECIES	170																ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00940000155837.o #30	ENSGT00940000154257.a	ENSGT01030000234539.a.a.b.a.b.a.b.c.a #33	ENSGT00940000158440.g.b.g.a #34	ENSGT00390000015942 #35	ENSGT00390000010331.k.b	ENSGT00390000018145.r	ENSGT00940000154914.wb.a	ENSGT01030000234532.B.e.b.f
Salmo	ANCESTRAL SPECIES	199															ENSGT00390000018587.f.d #19	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00940000155837.o #30	ENSGT00940000154257.a	ENSGT01030000234539.a.a.b.a.b.a.b.c.a #33	ENSGT00940000158440.g.b.g.a #34	ENSGT00390000015942 #35	ENSGT00390000010331.k.b	ENSGT00390000018145.r	ENSGT00940000154914.wb.a
River trout	MODERN SPECIES	37	RAB3IL1 (ENSSTUG00000006428)	ENSSTUG00000006562	fth1b (ENSSTUG00000006573)	ENSSTUG00000006590	pgghg (ENSSTUG00000006613)	ENSSTUG00000006939	ENSSTUG00000006953	PNPLA2 (ENSSTUG00000006965)	ENSSTUG00000007004	ENSSTUG00000007296	ENSSTUG00000007310	EPS8L2 (ENSSTUG00000007323) #15	MYRF (ENSSTUG00000007363) #17	tmem258 (ENSSTUG00000007445) #18	tmem138 (ENSSTUG00000007448) #19	gatd1 (ENSSTUG00000007459) #22	chid1 (ENSSTUG00000007479) #23	ighmbp2 (ENSSTUG00000007819) #24	rapsn (ENSSTUG00000009640) #26	kbtbd4 (ENSSTUG00000009644) #27	ENSSTUG00000009648	kif23 (ENSSTUG00000009676) #30	anxa2a (ENSSTUG00000009997)	PIAS1 (ENSSTUG00000010120) #33	skor1b (ENSSTUG00000010371) #34	zgc:162898 (ENSSTUG00000010384) #35	snapc5 (ENSSTUG00000010396)	rpl4 (ENSSTUG00000010410)	rab11a (ENSSTUG00000001124)	foxb1a (ENSSTUG00000001625)	GCNT3 (ENSSTUG00000001883)
Atlantic salmon	MODERN SPECIES	1	athl1 (ENSSSAG00000043658)	ENSSSAG00000108878	ENSSSAG00000027926	ENSSSAG00000084257	ENSSSAG00000105215	ENSSSAG00000096114	ENSSSAG00000103355	ENSSSAG00000043947 #9	ENSSSAG00000044326 #10	ENSSSAG00000073281 #11	ENSSSAG00000082094 #15	ENSSSAG00000091265 #17	ENSSSAG00000073302 #17	ENSSSAG00000108067 #18	ENSSSAG00000044290 #19	pddc1 (ENSSSAG00000044282) #22	chid1 (ENSSSAG00000044253) #23	ighmbp2 (ENSSSAG00000044095) #24	ENSSSAG00000087506 #26	ENSSSAG00000104921	kbtbd4 (ENSSSAG00000092517) #27	ENSSSAG00000044863	ENSSSAG00000044381 #30	ENSSSAG00000048640	PIAS1 (ENSSSAG00000082518) #33	SKOR1 (ENSSSAG00000070841) #34	ENSSSAG00000111744	ENSSSAG00000101813	C15orf61 (ENSSSAG00000095506) #35	ENSSSAG00000047793	ENSSSAG00000090092
Oncorhynchus	ANCESTRAL SPECIES	10	ENSGT01040000240558	ENSGT00940000159102.c.a	ENSGT00940000158650	ENSGT00950000182841.b.a.b.a.b	ENSGT00730000111073.e	ENSGT00390000006297	ENSGT00940000156120.b.m.b	ENSGT00940000160155.f	ENSGT00940000165631.p.a.a	ENSGT00940000157180.a.f #9	ENSGT01060000248781.e.a	ENSGT00730000113054 #10	ENSGT00940000155040.a.d #11	ENSGT00940000160990.f #15	ENSGT00390000010089.g.b #18	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00940000155837.o #30	ENSGT00940000154257.a	ENSGT01030000234539.a.a.b.a.b.a.b.c.a #33	ENSGT00940000158440.g.b.g.a #34	ENSGT00390000015942 #35	ENSGT00390000010331.k.b	ENSGT00390000018145.r	ENSGT00940000154914.wb.a	ENSGT01030000234532.B.e.b.f	ENSGT00940000169185
Oncorhynchus_a	ANCESTRAL SPECIES	5	ENSGT00940000158650	ENSGT00950000182841.b.a.a.b.a	ENSGT00950000182841.b.a.b.a.b	ENSGT00730000111073.e	ENSGT00390000006297	ENSGT00940000156120.b.m.b	ENSGT00940000160155.f	ENSGT00940000165631.p.a.a	ENSGT00940000157180.a.f #9	ENSGT00730000113054 #10	ENSGT00940000155040.a.d #11	ENSGT00940000160990.f #15	ENSGT00530000063626.a.g #17	ENSGT00390000010089.g.b #18	ENSGT00390000018587.f.d #19	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00930000151035.a #24	ENSGT00390000016785 #26	ENSGT00940000158775 #27	ENSGT00990000203778	ENSGT00940000155837.o #30	ENSGT00940000154257.a	ENSGT01030000234539.a.a.b.a.b.a.b.c.a #33	ENSGT00940000158440.g.b.g.a #34	ENSGT00390000015942 #35	ENSGT00390000010331.k.b	ENSGT00390000018145.r	ENSGT00940000154914.wb.a	ENSGT01030000234532.B.e.b.f	ENSGT00940000169185
Chinook salmon	MODERN SPECIES	14	wnt10b (ENSOTSG00005034824)	ENSOTSG00005034822	ENSOTSG00005034821	ENSOTSG00005034820	ikzf4 (ENSOTSG00005047030)	DNAJC22 (ENSOTSG00005047028)	lmbr1l (ENSOTSG00005047027)	dhh (ENSOTSG00005047024)	KMT2D (ENSOTSG00005047023)	ACVR1B (ENSOTSG00005047016)	acvrl1 (ENSOTSG00005047013)	ANKRD33 (ENSOTSG00005047012)	USP11 (ENSOTSG00005046478)	ENSOTSG00005046477	tmem258 (ENSOTSG00005046476) #18	gatd1 (ENSOTSG00005046474) #22	chid1 (ENSOTSG00005046473) #23	ighmbp2 (ENSOTSG00005046236) #24	rapsn (ENSOTSG00005046223) #26	kbtbd4 (ENSOTSG00005046222) #27	ENSOTSG00005046221	kif23 (ENSOTSG00005046189) #30	ENSOTSG00005046182	anxa2a (ENSOTSG00005046178)	ENSOTSG00005046174 #33	ENSOTSG00005046172 #33	skor1b (ENSOTSG00005046171) #34	ENSOTSG00005046165	neurod4 (ENSOTSG00005046159)	zgc:153867 (ENSOTSG00005046151)	C1QL4 (ENSOTSG00005046147)
Coho salmon	MODERN SPECIES	14	pgghg (ENSOKIG00005037895)	ENSOKIG00005038066	ENSOKIG00005038088	PNPLA2 (ENSOKIG00005038111)	ENSOKIG00005038158	ENSOKIG00005038238 #9	ENSOKIG00005038249	ENSOKIG00005038257	ENSOKIG00005038269 #10	LRRC10B (ENSOKIG00005038288) #11	EPS8L2 (ENSOKIG00005038312) #15	ENSOKIG00005038494	ENSOKIG00005038501 #17	tmem258 (ENSOKIG00005038553) #18	tmem138 (ENSOKIG00005038563) #19	gatd1 (ENSOKIG00005038577) #22	chid1 (ENSOKIG00005038605) #23	ighmbp2 (ENSOKIG00005038644) #24	ENSOKIG00005038835	rapsn (ENSOKIG00005038841) #26	kbtbd4 (ENSOKIG00005038881) #27	ENSOKIG00005038909	ENSOKIG00005038923	KIF23 (ENSOKIG00005038931) #30	ENSOKIG00005038998	anxa2a (ENSOKIG00005039046)	PIAS1 (ENSOKIG00005039175) #33	SKOR1 (ENSOKIG00005039477) #34	ENSOKIG00005039513	ENSOKIG00005039560	ENSOKIG00005039566
Rainbow trout	MODERN SPECIES	11							ENSOMYG00000074962	ENSOMYG00000049416	ENSOMYG00000027620 #11	ENSOMYG00000020412 #15	ENSOMYG00000027616	ENSOMYG00000063117 #15	ENSOMYG00000027634 #17	ENSOMYG00000027660 #18	tmem138 (ENSOMYG00000027670) #19	ENSOMYG00000027681 #22	ENSOMYG00000027692 #23	ighmbp2 (ENSOMYG00000028240) #24	ENSOMYG00000061496 #26	kbtbd4 (ENSOMYG00000029900) #27	ENSOMYG00000029914	ENSOMYG00000030575 #30	ENSOMYG00000033646	PIAS1 (ENSOMYG00000033714) #33	SKOR1 (ENSOMYG00000033800) #34	C15orf61 (ENSOMYG00000034182) #35	ENSOMYG00000055265	ENSOMYG00000034189	ENSOMYG00000034225	rab11a (ENSOMYG00000049517)	ENSOMYG00000048854
Huchen	MODERN SPECIES	6622															TMEM258 (ENSHHUG00000007095) #18	gatd1 (ENSHHUG00000007100) #22	ENSHHUG00000007109
Northern pike	MODERN SPECIES	18	smad3b (ENSELUG00000024171)	ENSELUG00000034022	PNPLA2 (ENSELUG00000024038)	ENSELUG00000024009	ENSELUG00000023968	SYT7 (ENSELUG00000023938) #9	LRRC10B (ENSELUG00000023860) #11	fads2 (ENSELUG00000023847) #12	EPS8L2 (ENSELUG00000023804) #15	TMEM80 (ENSELUG00000023746) #16	MYRF (ENSELUG00000023732) #17	tmem258 (ENSELUG00000028457) #18	tmem138 (ENSELUG00000023617) #19	cracr2b (ENSELUG00000023578) #20	cd151 (ENSELUG00000023563) #21	gatd1 (ENSELUG00000023513) #22	chid1 (ENSELUG00000023526) #23	ighmbp2 (ENSELUG00000023450) #24	ENSELUG00000033153 #25	rapsn (ENSELUG00000023136) #26	kbtbd4 (ENSELUG00000023124) #27	ddb2 (ENSELUG00000023110) #29	kif23 (ENSELUG00000023091) #30	ENSELUG00000030552	ENSELUG00000022942	ENSELUG00000022894	pgghg (ENSELUG00000022881)	ENSELUG00000022851	fth1b (ENSELUG00000022755)	BEST1 (ENSELUG00000022745)	RAB3IL1 (ENSELUG00000022708)
Otomorpha	ANCESTRAL SPECIES	329	ENSGT00940000165631	ENSGT00940000157180.b ##9	ENSGT01060000248781	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23
Otophysi	ANCESTRAL SPECIES	31	ENSGT00940000157180.b ##9	ENSGT01060000248781	ENSGT00940000157180.a #9	ENSGT00940000155040.a #11	ENSGT00730000113054 #10	ENSGT00940000164030	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990.h #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00390000013777	ENSGT00940000153883.a	ENSGT00940000153998.b	ENSGT00530000064873.b	ENSGT00730000111073	ENSGT00940000163982	ENSGT00390000010251	ENSGT00390000018051	ENSGT00940000156717.e	ENSGT00730000111271	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000000903.a.j
Characiphysae	ANCESTRAL SPECIES	6	ENSGT00940000158792	ENSGT00530000063868.b.l	ENSGT00390000013052	ENSGT01100000263537.b.a.b.j	ENSGT00810000125439.B.c.b	ENSGT00950000182818.B.d	ENSGT00950000183093.A.a	ENSGT00940000164657	ENSGT00940000165903	ENSGT00510000048252	ENSGT00940000155628	ENSGT00390000006548.a.b.b	ENSGT00940000154795	ENSGT00530000063554.a	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00390000013777	ENSGT00940000153883.a	ENSGT00940000153998.b	ENSGT00530000064873.b.e	ENSGT00730000111073	ENSGT00940000163982	ENSGT00390000010251	ENSGT00390000018051	ENSGT00940000156717.e	ENSGT00730000111271	ENSGT00940000156469.a	ENSGT00390000009456	ENSGT00740000115898	ENSGT00940000157021
Characiphysae_b	ANCESTRAL SPECIES	5	ENSGT00940000158792	ENSGT00530000063868.b.l	ENSGT01030000234621.E	ENSGT00390000013052	ENSGT00810000125439.B.c.b	ENSGT00950000182818.B.d	ENSGT00950000183093.A.a	ENSGT00940000164657	ENSGT00940000165903	ENSGT00510000048252	ENSGT00940000155628	ENSGT00390000006548.a.b.b	ENSGT00940000154795	ENSGT00530000063554.a	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00390000013777	ENSGT00940000153883.a	ENSGT00940000153998.b	ENSGT00530000064873.b.e	ENSGT00730000111073	ENSGT00940000163982	ENSGT00390000010251	ENSGT00390000018051	ENSGT00940000156717.e	ENSGT00730000111271	ENSGT00940000153216.a.a.c.b.n	ENSGT00940000156469.a	ENSGT00390000009456	ENSGT00740000115898
Characoidei	ANCESTRAL SPECIES	4	ENSGT00940000158792	ENSGT00530000063868.b.l	ENSGT01030000234621.E	ENSGT00390000013052	ENSGT00810000125439.B.c.b	ENSGT00950000182818.B.d	ENSGT00950000183093.A.a	ENSGT00940000164657	ENSGT00940000165903	ENSGT00510000048252	ENSGT00940000155628	ENSGT00390000006548.a.b.b	ENSGT00940000154795	ENSGT00530000063554.a	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00390000013777	ENSGT00940000153883.a	ENSGT00940000153998.b	ENSGT00530000064873.b.e	ENSGT00730000111073	ENSGT00940000163982	ENSGT00390000010251	ENSGT00390000018051	ENSGT00940000156717.e	ENSGT00730000111271	ENSGT00940000153216.a.a.c.b.n	ENSGT00940000156469.a	ENSGT00390000009456	ENSGT00740000115898
Red-bellied piranha	MODERN SPECIES	709									aebp2 (ENSPNAG00000010421)	csrp2 (ENSPNAG00000010464)	zdhhc17 (ENSPNAG00000010545)	OSBPL8 (ENSPNAG00000010651)	nap1l1 (ENSPNAG00000010725)	pus7 (ENSPNAG00000010812)	cd151 (ENSPNAG00000010864) #21	gatd1 (ENSPNAG00000010894) #22	chid1 (ENSPNAG00000011004) #23
Mexicana tetra	MODERN SPECIES	23	irak4 (ENSAMXG00000039490)	twf1a (ENSAMXG00000014613)	ENSAMXG00000014603	TMEM117 (ENSAMXG00000032917)	NELL2 (ENSAMXG00000014574)	ENSAMXG00000030223	DBX2 (ENSAMXG00000033273)	szl (ENSAMXG00000014533)	ENSAMXG00000014490	ENSAMXG00000014470	CSNK1G1 (ENSAMXG00000032151)	zgc:114188 (ENSAMXG00000014445)	ENSAMXG00000014407	pus7 (ENSAMXG00000014361)	cd151 (ENSAMXG00000014332) #21	gatd1 (ENSAMXG00000038401) #22	chid1 (ENSAMXG00000014277) #23	thoc5 (ENSAMXG00000014235)	zgc:158398 (ENSAMXG00000014201)	morc2 (ENSAMXG00000014169)	prnprs3 (ENSAMXG00000025658)	ENSAMXG00000014138	ENSAMXG00000036962	ENSAMXG00000014080	ccdc77 (ENSAMXG00000014037)	hdhd5 (ENSAMXG00000014019)	RAB19 (ENSAMXG00000043316)	ccdc34 (ENSAMXG00000013987)	ENSAMXG00000013972	ENSAMXG00000013952	SLC7A10 (ENSAMXG00000013943)
Electric eel	MODERN SPECIES	47	ENSEEEG00000019815	ADAMTS20 (ENSEEEG00000019807)	irak4 (ENSEEEG00000019799)	twf1a (ENSEEEG00000019788)	TMEM117 (ENSEEEG00000019786)	NELL2 (ENSEEEG00000019776)	ENSEEEG00000019775	szl (ENSEEEG00000019774)	ENSEEEG00000019773	PCLAF (ENSEEEG00000019772)	ENSEEEG00000019659	zgc:114188 (ENSEEEG00000019592)	ENSEEEG00000019463	pus7 (ENSEEEG00000019428)	cd151 (ENSEEEG00000019420) #21	gatd1 (ENSEEEG00000019415) #22	chid1 (ENSEEEG00000019412) #23	thoc5 (ENSEEEG00000019393)	zgc:158398 (ENSEEEG00000019389)	morc2 (ENSEEEG00000019110)	prnprs3 (ENSEEEG00000019093)	ccdc77 (ENSEEEG00000019089)	hdhd5 (ENSEEEG00000019088)	RAB19 (ENSEEEG00000019086)	ENSEEEG00000019084	ENSEEEG00000018887	SLC7A10 (ENSEEEG00000018837)	faap24 (ENSEEEG00000018834)	bmb (ENSEEEG00000018833)	ANKRD27 (ENSEEEG00000018831)	MAF (ENSEEEG00000018829)
Channel catfish	MODERN SPECIES	5	adamts20 (ENSIPUG00000014644)	irak4 (ENSIPUG00000014731)	twf1a (ENSIPUG00000014796)	tmem117 (ENSIPUG00000014873)	ENSIPUG00000014925	nell2 (ENSIPUG00000014934)	ENSIPUG00000015026	szl (ENSIPUG00000015038)	mov10l1 (ENSIPUG00000015063)	pclaf (ENSIPUG00000015111)	ENSIPUG00000015141	zgc:114188 (ENSIPUG00000015246)	srpk2 (ENSIPUG00000015342)	pus7 (ENSIPUG00000015465)	cd151 (ENSIPUG00000015553) #21	pddc1 (ENSIPUG00000015648) #22	chid1 (ENSIPUG00000015692) #23	thoc5 (ENSIPUG00000015790)	zgc:158398 (ENSIPUG00000015866)	Morc2a (ENSIPUG00000015886)	prnprs3 (ENSIPUG00000016085)	ENSIPUG00000016095	ENSIPUG00000016122	ENSIPUG00000016151	ccdc77 (ENSIPUG00000016192)	hdhd5 (ENSIPUG00000016245)	RAB19 (ENSIPUG00000016261)	ccdc34 (ENSIPUG00000016279)	ctrb.1 (ENSIPUG00000016295)	SLC7A10 (ENSIPUG00000016318)	faap24 (ENSIPUG00000016336)
Cyprinoidei	ANCESTRAL SPECIES	64	ENSGT00940000166188	ENSGT00940000165631	ENSGT00940000157180.b ##9	ENSGT01060000248781	ENSGT00940000157180.a #9	ENSGT00730000113054 #10	ENSGT00940000164030	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990.h #15	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00940000165330	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23	ENSGT00390000013777	ENSGT00940000153883.a	ENSGT00940000153998.b	ENSGT00530000064873.b	ENSGT00730000111073	ENSGT00940000163982.d	ENSGT00390000010251	ENSGT00390000018051	ENSGT00940000156717.e	ENSGT00730000111271	ENSGT00940000158160	ENSGT00390000011239.i	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000000903.a.j
Cyprininae	ANCESTRAL SPECIES	146	ENSGT00940000157971.eb	ENSGT00940000164955.b.a	ENSGT00940000160974.b.c.j	ENSGT00940000159701.c	ENSGT00390000006297.d	ENSGT00940000156120.b.j	ENSGT00940000160155.a	ENSGT00940000166188	ENSGT00940000165631.f.b	ENSGT00530000063626.a.c #17	ENSGT00390000010089 #18	ENSGT00390000018587.f.a #19	ENSGT00440000033504.A.h #20	ENSGT00980000200651	ENSGT00940000157760.g.b.c #21	ENSGT00940000165047 #22	ENSGT00390000012069.j #23	ENSGT00390000013777.d	ENSGT00940000153883.a	ENSGT00940000153998.b.q	ENSGT00530000064873.b.d	ENSGT00730000111073.h	ENSGT00940000163982.d	ENSGT00390000010251.i	ENSGT00390000018051.c	ENSGT00940000156717.e.g	ENSGT00730000111271	ENSGT00940000158160.d	ENSGT00390000011239.i.a	ENSGT01050000244841.A.b.b.a.b.a	ENSGT00390000000903.a.j
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	17	ENSCARG00000013850	ENSCARG00000013857	ENSCARG00000013864	ENSCARG00000013873	PNPLA2 (ENSCARG00000013895)	ENSCARG00000013913	pgghg (ENSCARG00000013928)	deaf1 (ENSCARG00000013959)	drd4a (ENSCARG00000013994)	ENSCARG00000014012	MYRF (ENSCARG00000014052) #17	tmem258 (ENSCARG00000014104) #18	tmem138 (ENSCARG00000014111) #19	cracr2b (ENSCARG00000014118) #20	cd151 (ENSCARG00000014134) #21	gatd1 (ENSCARG00000014153) #22	chid1 (ENSCARG00000017615) #23	thoc5 (ENSCARG00000014298)	zgc:158398 (ENSCARG00000017674)	morc2 (ENSCARG00000017706)	prnprs3 (ENSCARG00000017822)	ENSCARG00000017833	ENSCARG00000017841	ccdc77 (ENSCARG00000017863)	hdhd5 (ENSCARG00000017893)	ENSCARG00000017920	ccdc34 (ENSCARG00000017931)	PRKAR2B (ENSCARG00000017967)	hbp1 (ENSCARG00000018382)	GPR22 (ENSCARG00000018408)	chchd3b (ENSCARG00000018421)
Goldfish	MODERN SPECIES	17	ENSCARG00000014012	drd4a (ENSCARG00000013994)	deaf1 (ENSCARG00000013959)	pgghg (ENSCARG00000013928)	ENSCARG00000013913	PNPLA2 (ENSCARG00000013895)	ENSCARG00000013873	ENSCARG00000013864	ENSCARG00000013857	ENSCARG00000013850	MYRF (ENSCARG00000013231) #17	tmem258 (ENSCARG00000013175) #18	tmem138 (ENSCARG00000013171) #19	cracr2b (ENSCARG00000013167) #20	cd151 (ENSCARG00000013156) #21	gatd1 (ENSCARG00000013147) #22	chid1 (ENSCARG00000013088) #23	thoc5 (ENSCARG00000012790)	zgc:158398 (ENSCARG00000012740)	SHISAL1 (ENSCARG00000012166)	parvg (ENSCARG00000012152)	parvb (ENSCARG00000012087)	ENSCARG00000046619	ENSCARG00000046611	CYP19A1 (ENSCARG00000041932)	ENSCARG00000041678	ENSCARG00000041671	ENSCARG00000041581	gnb5a (ENSCARG00000040708)	EPS8L2 (ENSCARG00000040618) #15	fads2 (ENSCARG00000040355) #12
Cyprininae_a	ANCESTRAL SPECIES	188	ENSGT00940000160155.b	ENSGT00940000166188.d	ENSGT00940000165631.f.a.a	ENSGT00940000157180.a.a #9	ENSGT00730000113054.c #10	ENSGT00940000164030.h.b	ENSGT00950000182990.a.a.a.b.t #12	ENSGT00940000160990.h.a #15	ENSGT00950000182996.b.a.a.b.d.a.f.a.a.a.b.a.b.b	ENSGT00530000063626.a.c #17	ENSGT00390000010089 #18	ENSGT00390000018587.f.a #19	ENSGT00440000033504.A.h #20	ENSGT00980000200651	ENSGT00940000157760.g.b.c #21	ENSGT00940000165047 #22	ENSGT00390000012069.j #23	ENSGT00390000013777.d	ENSGT00940000153883.a	ENSGT00940000153998.b.q	ENSGT00530000064873.b.d	ENSGT00730000111073.h	ENSGT00940000163982.c	ENSGT00390000010251.i	ENSGT00390000018051.c	ENSGT00940000156717.e.g	ENSGT00730000111271	ENSGT00940000158160.d	ENSGT00390000011239.i.a	ENSGT01050000244841.A.b.b.a.b.a	ENSGT00390000000903.a.j
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	422	ENSSGRG00000028311	PNPLA2 (ENSSGRG00000028295)	ENSSGRG00000028294	ENSSGRG00000028293	ENSSGRG00000028292	SYT7 (ENSSGRG00000028291) #9	ENSSGRG00000028290	fads2 (ENSSGRG00000025969) #12	ENSSGRG00000025932	MYRF (ENSSGRG00000025931) #17	tmem258 (ENSSGRG00000025929) #18	tmem138 (ENSSGRG00000025928) #19	cracr2b (ENSSGRG00000025927) #20	ENSSGRG00000025926	cd151 (ENSSGRG00000025923) #21	gatd1 (ENSSGRG00000025917) #22	thoc5 (ENSSGRG00000025357)	zgc:158398 (ENSSGRG00000025355)	morc2 (ENSSGRG00000025231)	prnprs3 (ENSSGRG00000025230)	ENSSGRG00000025229	ENSSGRG00000025228	ccdc77 (ENSSGRG00000025223)	ENSSGRG00000025222	hdhd5 (ENSSGRG00000025221)	RAB19 (ENSSGRG00000025171)	ENSSGRG00000025141	ccdc34 (ENSSGRG00000025140)	hbp1 (ENSSGRG00000025139)	ENSSGRG00000025138	chchd3b (ENSSGRG00000025136)
Golden-line barbel	MODERN SPECIES	441	ufd1l (ENSSGRG00000014242)	cdc45 (ENSSGRG00000014192)	cldn5a (ENSSGRG00000014185)	zgc:63587 (ENSSGRG00000014184)	ENSSGRG00000014172	ENSSGRG00000014171	rad9b (ENSSGRG00000014170)	pptc7a (ENSSGRG00000014167)	CUX2 (ENSSGRG00000014165)	mtmr3 (ENSSGRG00000012943)	CIT (ENSSGRG00000012888)	BICDL1 (ENSSGRG00000012878)	rab35b (ENSSGRG00000012877)	GCN1 (ENSSGRG00000009101)	ENSSGRG00000009059	gatd1 (ENSSGRG00000009057) #22	ctu1 (ENSSGRG00000009056)	ENSSGRG00000009055	ENSSGRG00000009054	ENSSGRG00000009053
Common carp reference	MODERN SPECIES	37	ENSCCRG00000006943	ENSCCRG00000073547	ENSCCRG00000008684	ENSCCRG00000069619 #9	ENSCCRG00000053496	ENSCCRG00000013900 #10	ENSCCRG00000069827	fads2 (ENSCCRG00000071740) #12	ENSCCRG00000039225 #15	ENSCCRG00000018340	ENSCCRG00000047532 #17	tmem258 (ENSCCRG00000014732) #18	tmem138 (ENSCCRG00000014725) #19	cracr2b (ENSCCRG00000057033) #20	cd151 (ENSCCRG00000063346) #21	gatd1 (ENSCCRG00000027407) #22	chid1 (ENSCCRG00000012011) #23	thoc5 (ENSCCRG00000047142)	morc2 (ENSCCRG00000051768)	prnprs3 (ENSCCRG00000063338)	ENSCCRG00000018583	ENSCCRG00000065382	ccdc77 (ENSCCRG00000018758)	hdhd5 (ENSCCRG00000018621)	ENSCCRG00000018763	PRKAR2B (ENSCCRG00000018643)	hbp1 (ENSCCRG00000058639)	GPR22 (ENSCCRG00000051509)	chchd3b (ENSCCRG00000075859)	slc35b4 (ENSCCRG00000018820)	golt1bb (ENSCCRG00000064870)
Zebrafish	MODERN SPECIES	17	ENSDARG00000113454	PNPLA2 (ENSDARG00000089390)	ENSDARG00000074626	ENSDARG00000020718	SYT7 (ENSDARG00000063568) #9	ENSDARG00000089183 #10	fads2 (ENSDARG00000019532) #12	EPS8L2 (ENSDARG00000058108) #15	MYRF (ENSDARG00000078676) #17	tmem258 (ENSDARG00000078785) #18	tmem138 (ENSDARG00000090543) #19	cracr2b (ENSDARG00000053636) #20	ENSDARG00000076727	ENSDARG00000116325	cd151 (ENSDARG00000038288) #21	gatd1 (ENSDARG00000053609) #22	chid1 (ENSDARG00000069673) #23	thoc5 (ENSDARG00000038290)	zgc:158398 (ENSDARG00000074226)	morc2 (ENSDARG00000028539)	prnprs3 (ENSDARG00000003705)	ENSDARG00000099194	ENSDARG00000099768	zgc:194202 (ENSDARG00000098561)	ccdc77 (ENSDARG00000102145)	hdhd5 (ENSDARG00000105077)	RAB19 (ENSDARG00000101150)	ccdc34 (ENSDARG00000098911)	PRKAR2B (ENSDARG00000036446)	hbp1 (ENSDARG00000028517)	GPR22 (ENSDARG00000045383)
Clupeiformes	ANCESTRAL SPECIES	169	ENSGT00940000160155	ENSGT00940000166188	ENSGT00940000165631.b	ENSGT01060000248781	ENSGT00940000157180.a #9	ENSGT00940000155040.a #11	ENSGT00950000182990.a.a.a.b #12	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00530000063626.a #17	ENSGT00390000010089 #18	ENSGT00390000018587.f #19	ENSGT00440000033504.A #20	ENSGT00980000200651	ENSGT00940000157760.g.b #21	ENSGT00940000165047 #22	ENSGT00390000012069 #23
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	250	cd151 (ENSDCDG00000007652) #21	ENSDCDG00000007655	cracr2b (ENSDCDG00000007656) #20	ENSDCDG00000007663	ENSDCDG00000007668	ENSDCDG00000007741	ENSDCDG00000007744	ENSDCDG00000007749	ucmab (ENSDCDG00000007765)	camk1db (ENSDCDG00000007784)	ucmab (ENSDCDG00000007936)	ENSDCDG00000008729	cracr2b (ENSDCDG00000008752) #20	ENSDCDG00000008758	cd151 (ENSDCDG00000008764) #21	gatd1 (ENSDCDG00000008771) #22	chid1 (ENSDCDG00000008779) #23	ENSDCDG00000008792	si:dkey-30c15.13 (ENSDCDG00000009048)	ENSDCDG00000009094	gcsha (ENSDCDG00000009152)	ENSDCDG00000009177	cfap161 (ENSDCDG00000009212)	ENSDCDG00000009232	ENSDCDG00000009379	ENSDCDG00000010977	mtss1la (ENSDCDG00000011083)	ENSDCDG00000012939	ENSDCDG00000012949	ENSDCDG00000012958	ighmbp2 (ENSDCDG00000012990) #24
Denticle herring	MODERN SPECIES	250	cd151 (ENSDCDG00000008764) #21	ENSDCDG00000008758	cracr2b (ENSDCDG00000008752) #20	ENSDCDG00000008729	ucmab (ENSDCDG00000007936)	camk1db (ENSDCDG00000007784)	ucmab (ENSDCDG00000007765)	ENSDCDG00000007749	ENSDCDG00000007744	ENSDCDG00000007741	ENSDCDG00000007668	ENSDCDG00000007663	cracr2b (ENSDCDG00000007656) #20	ENSDCDG00000007655	cd151 (ENSDCDG00000007652) #21	gatd1 (ENSDCDG00000007646) #22	chid1 (ENSDCDG00000007548) #23	ENSDCDG00000007502	si:dkey-30c15.13 (ENSDCDG00000007487)	ENSDCDG00000007481	ENSDCDG00000011279	ENSDCDG00000011264	dhtkd1 (ENSDCDG00000009522)	ENSDCDG00000008431	TAF3 (ENSDCDG00000008384)	ENSDCDG00000008363
Osteoglossiformes	ANCESTRAL SPECIES	342																ENSGT00940000165047 #22	ENSGT00950000182990.a.a.a.b.a #12	ENSGT00390000005535	ENSGT00940000158970	ENSGT00390000014065	ENSGT00390000017480	ENSGT00940000161832.a	ENSGT00950000182973.b.a.b	ENSGT00390000016223	ENSGT00940000160394.a.b	ENSGT00940000156152.e.a.a	ENSGT00940000159848.b	ENSGT00940000156124.c.a.a	ENSGT00940000166946	ENSGT00390000007055
Asian bonytongue	MODERN SPECIES	22	MYO5A (ENSSFOG00015018643)	atosa (ENSSFOG00015018727)	onecut1 (ENSSFOG00015018760)	UNC13C (ENSSFOG00015018774)	rsl24d1 (ENSSFOG00015030420)	RAB27A (ENSSFOG00015018847)	ENSSFOG00015018861	ENSSFOG00015018882	NEDD4 (ENSSFOG00015018944)	RFX7 (ENSSFOG00015026062)	mns1 (ENSSFOG00015029570)	mns1 (ENSSFOG00015019021)	TCF12 (ENSSFOG00015019071)	CGNL1 (ENSSFOG00015019177)	MYZAP (ENSSFOG00015019197)	gatd1 (ENSSFOG00015019214) #22	fads2 (ENSSFOG00015019252) #12	mrpl21 (ENSSFOG00015019282)	nqo1 (ENSSFOG00015019294)	ENSSFOG00015019308	celf1 (ENSSFOG00015019353)	ptpmt1 (ENSSFOG00015032056)	ndufs3 (ENSSFOG00015019420)	ENSSFOG00015019439	c1qtnf4 (ENSSFOG00015025161)	pacsin3 (ENSSFOG00015019453)	ambra1a (ENSSFOG00015019495)	CHRM4 (ENSSFOG00015019529)	mdkb (ENSSFOG00015019534)	DGKZ (ENSSFOG00015019562)	creb3l1 (ENSSFOG00015019727)
P. kingsleyae	MODERN SPECIES	16															ENSPKIG00000012208	gatd1 (ENSPKIG00000012226) #22	fads2 (ENSPKIG00000012250) #12	mrpl21 (ENSPKIG00000012297)	celf1 (ENSPKIG00000012324)	ptpmt1 (ENSPKIG00000012375)	ndufs3 (ENSPKIG00000012394)	c1qtnf4 (ENSPKIG00000012410)	pacsin3 (ENSPKIG00000012426)	ambra1a (ENSPKIG00000012478)	CHRM4 (ENSPKIG00000012549)	mdkb (ENSPKIG00000012563)	DGKZ (ENSPKIG00000012653)	ENSPKIG00000012837	creb3l1 (ENSPKIG00000012854)	phf21aa (ENSPKIG00000012884)	zgc:110699 (ENSPKIG00000012910)
Spotted gar	MODERN SPECIES	307															ENSLOCG00000000003	gatd1 (ENSLOCG00000000004) #22	taldo1 (ENSLOCG00000000006)	tspan4a (ENSLOCG00000000008)	chid1 (ENSLOCG00000000010) #23	ddb1 (ENSLOCG00000000012)	ENSLOCG00000000019	ENSLOCG00000000020
Reedfish	MODERN SPECIES	10	epha4b (ENSECRG00000005738)	uggt1 (ENSECRG00000005675)	ENSECRG00000005640	ENSECRG00000005617	hs6st1b (ENSECRG00000005609)	srprb (ENSECRG00000005585)	ENSECRG00000005538	WDR53 (ENSECRG00000005496)	ENSECRG00000005479	ENSECRG00000005444	RPLP2 (ENSECRG00000005424)	PNPLA2 (ENSECRG00000005401)	CRACR2B (ENSECRG00000005383) #20	cd151l (ENSECRG00000005361) #21	polr2l (ENSECRG00000005350)	gatd1 (ENSECRG00000005343) #22	ENSECRG00000005320	taldo1 (ENSECRG00000005300)	EPS8L2 (ENSECRG00000005273) #15	rnf141 (ENSECRG00000005257)	ampd3b (ENSECRG00000005231)	ENSECRG00000005218	adma (ENSECRG00000005210)	ENSECRG00000005204	swap70b (ENSECRG00000005196)	tspan4a (ENSECRG00000005184)	ENSECRG00000005177	ENSECRG00000005169	ENSECRG00000005164	ENSECRG00000005148	pgghg (ENSECRG00000005128)
Sarcopterygii	ANCESTRAL SPECIES	61								ENSGT00940000165330	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00940000161780	ENSGT00550000074828.a	ENSGT00940000161196	ENSGT00940000160931	ENSGT00940000163916	ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000162463	ENSGT00950000183205.a	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000166578	ENSGT00950000182939.a.b.b	ENSGT00940000156431
Tetrapoda	ANCESTRAL SPECIES	9	ENSGT00940000156076.b	ENSGT00940000156076.a.a.b	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b	ENSGT00390000012069 #23	ENSGT00940000160434	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00940000165330	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000162463	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.a	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000166578
Amniota	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Sauria	ANCESTRAL SPECIES	3	ENSGT00940000163235.E	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b	ENSGT00390000012069 #23	ENSGT00940000160434	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00940000165330	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000163235.E	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b	ENSGT00390000012069 #23	ENSGT00940000160434	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00940000165330	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00940000163235.E	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b	ENSGT00390000012069 #23	ENSGT00940000160434	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00940000165330	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000160931	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000162219	ENSGT00940000163235.E	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b	ENSGT00390000012069 #23	ENSGT00940000160434	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000160931	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238
Emydidae	ANCESTRAL SPECIES	79												ENSGT00550000074828.a.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000160931	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238
Three-toed box turtle	MODERN SPECIES	120													ENSTMTG00000006203	SLC25A22 (ENSTMTG00000006226)	ENSTMTG00000006238	ENSTMTG00000006251 #22	TALDO1 (ENSTMTG00000006266)	EPS8L2 (ENSTMTG00000006283) #15	TMEM80 (ENSTMTG00000006336) #16	DEAF1 (ENSTMTG00000006350)	DRD4 (ENSTMTG00000006381)	ENSTMTG00000006398	IRF7 (ENSTMTG00000006417)	ENSTMTG00000006493	RASSF7 (ENSTMTG00000006546)	ENSTMTG00000006601	HRAS (ENSTMTG00000006617)	ENSTMTG00000006629	RNH1 (ENSTMTG00000006643)	ENSTMTG00000006668	CHKA (ENSTMTG00000006685)
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b	ENSGT00390000012069 #23	ENSGT00940000160434	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00940000153118.eb.l.b	ENSGT00940000182115	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000160931	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492
Goode s thornscrub tortoise	MODERN SPECIES	18	AP2A2 (ENSGEVG00005016728)	CHID1 (ENSGEVG00005016810) #23	TSPAN4 (ENSGEVG00005016848)	ENSGEVG00005016928	CD151 (ENSGEVG00005016948) #21	ENSGEVG00005016976	ENSGEVG00005008970	ENSGEVG00005009009	ENSGEVG00005009042	CRACR2B (ENSGEVG00005009077) #20	PNPLA2 (ENSGEVG00005009157)	ENSGEVG00005009195	PIDD1 (ENSGEVG00005009263)	ENSGEVG00005009375	ENSGEVG00005009407	ENSGEVG00005009446 #22	TALDO1 (ENSGEVG00005009532)	EPS8L2 (ENSGEVG00005009563) #15	TMEM80 (ENSGEVG00005009606) #16	DEAF1 (ENSGEVG00005009640)	DRD4 (ENSGEVG00005009764)	ENSGEVG00005009809	ENSGEVG00005009856	IRF7 (ENSGEVG00005009949)	ENSGEVG00005009990	ENSGEVG00005010053	RASSF7 (ENSGEVG00005010151)	ENSGEVG00005010552	HRAS (ENSGEVG00005010603)	ENSGEVG00005010645	ENSGEVG00005010684
Archosauria	ANCESTRAL SPECIES	44															ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00960000187709	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b
Aves	ANCESTRAL SPECIES	47														ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000158912	ENSGT00940000156528	ENSGT00940000159326	ENSGT00390000005766	ENSGT00530000063950.a.a	ENSGT00940000159551	ENSGT00390000010376
Neognathae	ANCESTRAL SPECIES	30	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889	ENSGT00940000162775	ENSGT00390000010641	ENSGT00940000159796	ENSGT00940000160334	ENSGT00940000161522	ENSGT00390000001289.a	ENSGT00910000144307	ENSGT00950000183145.A.a	ENSGT00940000154852.b	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000158912	ENSGT00940000156528	ENSGT00940000159326	ENSGT00390000005766	ENSGT00530000063950.a.a	ENSGT00940000159551	ENSGT00390000010376
Neognathae_b	ANCESTRAL SPECIES	14	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889	ENSGT00940000162775	ENSGT00390000010641	ENSGT00940000159796	ENSGT00940000160334	ENSGT00940000161522	ENSGT00390000001289.a	ENSGT00910000144307	ENSGT00950000183145.A.a	ENSGT00940000154852.b	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000158912	ENSGT00940000156528	ENSGT00940000159326	ENSGT00390000005766	ENSGT00530000063950.a.a	ENSGT00940000159551	ENSGT00390000010376
Passeriformes	ANCESTRAL SPECIES	39	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889	ENSGT00390000010641	ENSGT00940000159796	ENSGT00940000160334	ENSGT00940000161522	ENSGT00390000001289.a	ENSGT00950000183145.A.a	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Zebra finch	MODERN SPECIES	27	CHURC1 (ENSTGUG00000026206)	PLEKHG3 (ENSTGUG00000007578)	NUP160 (ENSTGUG00000007581)	FNBP4 (ENSTGUG00000007629)	AGBL2 (ENSTGUG00000007643)	MTCH2 (ENSTGUG00000007652)	NUDT8 (ENSTGUG00000007694)	ENSTGUG00000007725	CDK2AP2 (ENSTGUG00000022260)	AIP (ENSTGUG00000007764)	ENSTGUG00000007776	ENSTGUG00000007792	ENSTGUG00000007810	ENSTGUG00000016693	ENSTGUG00000020021	ENSTGUG00000007815 #22	TALDO1 (ENSTGUG00000007821)	EIF4G2 (ENSTGUG00000007840)	CTR9 (ENSTGUG00000007907)	IRAG1 (ENSTGUG00000007955)	LYVE1 (ENSTGUG00000007979)	RNF141 (ENSTGUG00000020047)	AMPD3 (ENSTGUG00000008001)	ENSTGUG00000022953	ENSTGUG00000008020	SBF2 (ENSTGUG00000008025)	SWAP70 (ENSTGUG00000008108)	WEE1 (ENSTGUG00000008127)	ZNF143 (ENSTGUG00000008153)	IPO7 (ENSTGUG00000008189)	TMEM41B (ENSTGUG00000024814)
Great tit	MODERN SPECIES	25	CHURC1 (ENSPMJG00000003984)	SPTB (ENSPMJG00000003988)	PLEKHG3 (ENSPMJG00000003998)	NUP160 (ENSPMJG00000004017)	FNBP4 (ENSPMJG00000004890)	AGBL2 (ENSPMJG00000004893)	MTCH2 (ENSPMJG00000004897)	NDUFV1 (ENSPMJG00000004898)	CABP2 (ENSPMJG00000004899)	CDK2AP2 (ENSPMJG00000004904)	PITPNM1 (ENSPMJG00000004907)	AIP (ENSPMJG00000005094)	ENSPMJG00000005096	ENSPMJG00000005097	ENSPMJG00000005099	ENSPMJG00000005101 #22	TALDO1 (ENSPMJG00000005127)	EIF4G2 (ENSPMJG00000005130)	CTR9 (ENSPMJG00000005691)	ENSPMJG00000006038	IRAG1 (ENSPMJG00000006040)	LYVE1 (ENSPMJG00000006161)	RNF141 (ENSPMJG00000006162)	AMPD3 (ENSPMJG00000006166)	ADM (ENSPMJG00000006168)	SBF2 (ENSPMJG00000006175)	SWAP70 (ENSPMJG00000006194)	WEE1 (ENSPMJG00000006199)	ZNF143 (ENSPMJG00000006206)	IPO7 (ENSPMJG00000006214)	TMEM41B (ENSPMJG00000006230)
Neognathae_c	ANCESTRAL SPECIES	17	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889	ENSGT00940000162775	ENSGT00390000010641	ENSGT00940000164685	ENSGT00940000160334	ENSGT00940000161522.b	ENSGT00390000001289.a	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000158912	ENSGT00940000156528	ENSGT00940000159326	ENSGT00390000005766	ENSGT00530000063950.a.a	ENSGT00940000159551	ENSGT00390000010376	ENSGT00940000158100	ENSGT00390000003967
Kakapo	MODERN SPECIES	21	NUP160 (ENSSHBG00005008355)	FNBP4 (ENSSHBG00005008293)	AGBL2 (ENSSHBG00005008277)	MTCH2 (ENSSHBG00005008267)	NUDT8 (ENSSHBG00005008258)	NDUFV1 (ENSSHBG00005008244)	ENSSHBG00005008227	CDK2AP2 (ENSSHBG00005008218)	PITPNM1 (ENSSHBG00005008196)	AIP (ENSSHBG00005000129)	ENSSHBG00005004143	ENSSHBG00005004121	ENSSHBG00005004112	ENSSHBG00005004098	ENSSHBG00005004084	ENSSHBG00005004065 #22	TALDO1 (ENSSHBG00005004056)	EPS8L2 (ENSSHBG00005003789) #15	TMEM80 (ENSSHBG00005003689) #16	DEAF1 (ENSSHBG00005003577)	DRD4 (ENSSHBG00005003546)	ENSSHBG00005003536	BUB1B (ENSSHBG00005003488)	PAK6 (ENSSHBG00005003451)	PLCB2 (ENSSHBG00005003115)	DISP2 (ENSSHBG00005002967)	ENSSHBG00005002949	IVD (ENSSHBG00005002925)	BAHD1 (ENSSHBG00005002899)	CHST14 (ENSSHBG00005002886)	ENSSHBG00005002876
Golden eagle	MODERN SPECIES	7	ENSACCG00020013215	ENSACCG00020013243	NUP160 (ENSACCG00020013268)	FNBP4 (ENSACCG00020013300)	AGBL2 (ENSACCG00020013340)	MTCH2 (ENSACCG00020013377)	ENSACCG00020013401	NDUFV1 (ENSACCG00020013429)	ENSACCG00020013451	CDK2AP2 (ENSACCG00020013468)	ENSACCG00020013526	ENSACCG00020013507	AIP (ENSACCG00020013542)	ENSACCG00020013566	ENSACCG00020013587	ENSACCG00020013619 #22	TALDO1 (ENSACCG00020013649)	EPS8L2 (ENSACCG00020013765) #15	TMEM80 (ENSACCG00020013821) #16	DEAF1 (ENSACCG00020013848)	DRD4 (ENSACCG00020013869)	ENSACCG00020013885	BUB1B (ENSACCG00020013915)	PAK6 (ENSACCG00020013954)	PLCB2 (ENSACCG00020014048)	INAFM2 (ENSACCG00020014100)	ENSACCG00020014110	DISP2 (ENSACCG00020014139)	KNSTRN (ENSACCG00020014167)	IVD (ENSACCG00020014190)	BAHD1 (ENSACCG00020014209)
Galloanserae	ANCESTRAL SPECIES	30	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889	ENSGT00390000010641	ENSGT01100000264273	ENSGT00940000159796	ENSGT00940000160334	ENSGT00940000161522	ENSGT00390000001289.a	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000158912	ENSGT00940000156528	ENSGT00940000159326	ENSGT00390000005766	ENSGT00530000063950.a.a	ENSGT00940000159551	ENSGT00390000010376
Phasianidae	ANCESTRAL SPECIES	26	ENSGT00390000011163	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889	ENSGT00390000010641	ENSGT00940000159796	ENSGT00940000160334	ENSGT00940000161522	ENSGT00390000001289.a	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000158912	ENSGT00940000156528	ENSGT00940000159326	ENSGT00390000005766	ENSGT00530000063950.a.a	ENSGT00940000159551	ENSGT00390000010376	ENSGT00940000158100
Phasianidae_b	ANCESTRAL SPECIES	34	ENSGT00940000158908	ENSGT00940000156521.b	ENSGT00390000000972	ENSGT00390000003450	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000163889	ENSGT00390000010641	ENSGT01100000264273	ENSGT00940000159796	ENSGT00940000160334	ENSGT00940000161522	ENSGT00390000001289.a	ENSGT00940000159520.h.r	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00530000069101	ENSGT00940000164955	ENSGT00940000158912	ENSGT00940000156528	ENSGT00940000159326	ENSGT00390000005766	ENSGT00530000063950.a.a	ENSGT00940000159551	ENSGT00390000010376	ENSGT00940000158100
Chicken	MODERN SPECIES	34	PLEKHG3 (ENSGALG00010021640)	NUP160 (ENSGALG00010024170)	FNBP4 (ENSGALG00010021695)	AGBL2 (ENSGALG00010021737)	MTCH2 (ENSGALG00010021751)	NUDT8 (ENSGALG00010021835)	NDUFV1 (ENSGALG00010021892)	ENSGALG00010021851	CABP2 (ENSGALG00010021938)	CDK2AP2 (ENSGALG00010021947)	PITPNM1 (ENSGALG00010021953)	AIP (ENSGALG00010022042)	ENSGALG00010022050	NLRP3 (ENSGALG00010022058)	CEND1 (ENSGALG00010022130)	PDDC1 (ENSGALG00010022137) #22	TALDO1 (ENSGALG00010022148)	EPS8L2 (ENSGALG00010022157) #15	TMEM80 (ENSGALG00010022227) #16	DEAF1 (ENSGALG00010022239)	DRD4 (ENSGALG00010022249)	SCT (ENSGALG00010022996)	CDHR5 (ENSGALG00010023008)	BUB1B (ENSGALG00010023017)	PAK6 (ENSGALG00010023257)	PLCB2 (ENSGALG00010023305)	INAFM2 (ENSGALG00010023835)	ENSGALG00010023441	DISP2 (ENSGALG00010023498)	KNSTRN (ENSGALG00010023526)	IVD (ENSGALG00010023556)
Turkey	MODERN SPECIES	25	ENSMGAG00000003505	ENSMGAG00000003529	ENSMGAG00000003605	ENSMGAG00000003645	ENSMGAG00000003699	ENSMGAG00000019258	ENSMGAG00000003724	ENSMGAG00000003765	ENSMGAG00000003742	EPS8L2 (ENSMGAG00000003800) #15	ENSMGAG00000021172 #16	ENSMGAG00000019051	ENSMGAG00000003840	ENSMGAG00000003857	ENSMGAG00000015778	ENSMGAG00000003846 #22	ENSMGAG00000003901	ENSMGAG00000003871	CABP2 (ENSMGAG00000003993)	ENSMGAG00000004061	FNBP4 (ENSMGAG00000004226)	ENSMGAG00000004206	MTCH2 (ENSMGAG00000004133)	NUP160 (ENSMGAG00000004365)	ENSMGAG00000004480	ENSMGAG00000004413	CHURC1 (ENSMGAG00000018321)	RAB15 (ENSMGAG00000021379)	ENSMGAG00000004785	ENSMGAG00000004691	ENSMGAG00000004357
Japanese quail	MODERN SPECIES	23	UNC93B1 (ENSCJPG00005013270)	MAX (ENSCJPG00005013271)	FNTB (ENSCJPG00005013272)	ENSCJPG00005013308	RAB15 (ENSCJPG00005013309)	GPX2 (ENSCJPG00005013310)	NUP160 (ENSCJPG00005013463)	ENSCJPG00005013471	NDUFV1 (ENSCJPG00005013473)	CABP2 (ENSCJPG00005013508)	CDK2AP2 (ENSCJPG00005013509)	AIP (ENSCJPG00005013517)	ENSCJPG00005013518	ENSCJPG00005013519	ENSCJPG00005013520	ENSCJPG00005013521 #22	TALDO1 (ENSCJPG00005013524)	EPS8L2 (ENSCJPG00005013525) #15	TMEM80 (ENSCJPG00005013526) #16	DEAF1 (ENSCJPG00005013527)	DRD4 (ENSCJPG00005013528)	ENSCJPG00005013529	BUB1B (ENSCJPG00005013530)	PAK6 (ENSCJPG00005013531)	PLCB2 (ENSCJPG00005013534)	INAFM2 (ENSCJPG00005013535)	ENSCJPG00005013536	DISP2 (ENSCJPG00005013538)	KNSTRN (ENSCJPG00005013539)	IVD (ENSCJPG00005013542)	BAHD1 (ENSCJPG00005013670)
Anatidae	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Pink-footed goose	MODERN SPECIES	292															ENSABRG00000011169	ENSABRG00000011181 #22	TALDO1 (ENSABRG00000011196)	EPS8L2 (ENSABRG00000011203) #15	TMEM80 (ENSABRG00000011224) #16	DEAF1 (ENSABRG00000011232)	DRD4 (ENSABRG00000011254)	ENSABRG00000011260	ENSABRG00000011275	BUB1B (ENSABRG00000011310)	PAK6 (ENSABRG00000011361)	PLCB2 (ENSABRG00000011368)	ENSABRG00000011390	ENSABRG00000011395	DISP2 (ENSABRG00000011403)	ENSABRG00000011405	IVD (ENSABRG00000011410)
Lepidosauria	ANCESTRAL SPECIES	10	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b	ENSGT00390000012069 #23	ENSGT00950000185424	ENSGT00940000160434	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00940000182115	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492
Episquamata	ANCESTRAL SPECIES		ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b	ENSGT00390000012069 #23	ENSGT00950000185424	ENSGT00940000160434	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00940000182115	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000156076.a.a.b.c	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b	ENSGT00390000012069 #23	ENSGT00950000185424	ENSGT00940000160434	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00940000166578
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000156076.a.a.b.c	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b.c	ENSGT00390000012069 #23	ENSGT00950000185424	ENSGT00940000160434.k	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a.e	ENSGT00940000161780	ENSGT00940000161196	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00950000182939.a.b.b
Elapidae_a	ANCESTRAL SPECIES	29	ENSGT00940000156076.a.a.b.c	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b.c	ENSGT00390000012069 #23	ENSGT00950000185424	ENSGT00940000160434.k	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a.e	ENSGT00940000161780	ENSGT00940000161196	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.b	ENSGT00990000210563	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492
Acanthophiinae	ANCESTRAL SPECIES	29	ENSGT00940000156076.a.a.b.c	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b.c	ENSGT00390000012069 #23	ENSGT00950000185424	ENSGT00940000160434.k	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a.e	ENSGT00940000161780	ENSGT00940000161196	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000164955	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.b	ENSGT00990000210563	ENSGT00950000182839.B.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492
Mainland tiger snake	MODERN SPECIES	22	TOLLIP (ENSNSUG00000017411)	ENSNSUG00000017410	ENSNSUG00000017405	MUC2 (ENSNSUG00000017404)	MUC6 (ENSNSUG00000017403)	AP2A2 (ENSNSUG00000016607)	CHID1 (ENSNSUG00000016606) #23	TSPAN4 (ENSNSUG00000016605)	POLR2L (ENSNSUG00000016603)	CD151 (ENSNSUG00000016602) #21	CRACR2B (ENSNSUG00000016601) #20	PNPLA2 (ENSNSUG00000016577)	PIDD1 (ENSNSUG00000016481)	SLC25A22 (ENSNSUG00000016480)	ENSNSUG00000016479	ENSNSUG00000016478 #22	TALDO1 (ENSNSUG00000016477)	EPS8L2 (ENSNSUG00000016474) #15	TMEM80 (ENSNSUG00000016472) #16	DEAF1 (ENSNSUG00000016426)	DRD4 (ENSNSUG00000016421)	ENSNSUG00000016420	IRF7 (ENSNSUG00000016419)	ENSNSUG00000016417	ENSNSUG00000016416	ENSNSUG00000016415	RASSF7 (ENSNSUG00000016413)	HRAS (ENSNSUG00000016412)	ENSNSUG00000016411	ENSNSUG00000016410	RNH1 (ENSNSUG00000016409)
Eastern brown snake	MODERN SPECIES	32	ENSPTXG00000001135	MUC6 (ENSPTXG00000001148)	AP2A2 (ENSPTXG00000001157)	CHID1 (ENSPTXG00000001164) #23	ENSPTXG00000001169	TSPAN4 (ENSPTXG00000001178)	POLR2L (ENSPTXG00000001258)	CD151 (ENSPTXG00000001259) #21	CRACR2B (ENSPTXG00000001264) #20	PNPLA2 (ENSPTXG00000001267)	ENSPTXG00000001272	PIDD1 (ENSPTXG00000000090)	ENSPTXG00000000101	SLC25A22 (ENSPTXG00000000117)	ENSPTXG00000000134	ENSPTXG00000000146 #22	TALDO1 (ENSPTXG00000000162)	EPS8L2 (ENSPTXG00000000214) #15	TMEM80 (ENSPTXG00000000270) #16	DEAF1 (ENSPTXG00000000318)	DRD4 (ENSPTXG00000000853)	ENSPTXG00000001418	ENSPTXG00000001420	ENSPTXG00000001422	ENSPTXG00000001424	ENSPTXG00000001426	RASSF7 (ENSPTXG00000001430)	LRRC56 (ENSPTXG00000001433)	HRAS (ENSPTXG00000001435)	ENSPTXG00000001438	RNH1 (ENSPTXG00000001439)
Blue-lipped sea krait	MODERN SPECIES	2568												RPLP2 (ENSLLTG00000001950)	PIDD1 (ENSLLTG00000001940)	SLC25A22 (ENSLLTG00000001929)	ENSLLTG00000001925	ENSLLTG00000001919 #22	TALDO1 (ENSLLTG00000001909)
Indian cobra	MODERN SPECIES		ENSNNAG00000007408	ENSNNAG00000007390	AP2A2 (ENSNNAG00000006935)	CHID1 (ENSNNAG00000006861) #23	ENSNNAG00000006839	ENSNNAG00000006818	ENSNNAG00000006810	POLR2L (ENSNNAG00000006797)	CD151 (ENSNNAG00000006774) #21	CRACR2B (ENSNNAG00000006753) #20	PNPLA2 (ENSNNAG00000006726)	RPLP2 (ENSNNAG00000006712)	PIDD1 (ENSNNAG00000003275)	SLC25A22 (ENSNNAG00000003267)	ENSNNAG00000003257	ENSNNAG00000003245 #22	TALDO1 (ENSNNAG00000003220)	EPS8L2 (ENSNNAG00000003183) #15	TMEM80 (ENSNNAG00000003170) #16	DEAF1 (ENSNNAG00000003147)	DRD4 (ENSNNAG00000003083)	ENSNNAG00000003047	ENSNNAG00000003012	RASSF7 (ENSNNAG00000002990)	LRRC56 (ENSNNAG00000002981)	HRAS (ENSNNAG00000002977)	ENSNNAG00000002967	RNH1 (ENSNNAG00000002957)	CHKA (ENSNNAG00000002936)	KMT5B (ENSNNAG00000002927)	LRP5 (ENSNNAG00000002912)
Lizard	MODERN SPECIES		ENSACAG00000044470	CHID1 (ENSACAG00000015519) #23	ENSACAG00000041975	TSPAN4 (ENSACAG00000015514)	ENSACAG00000045167	ENSACAG00000036919	ENSACAG00000037345	POLR2L (ENSACAG00000038964)	CD151 (ENSACAG00000015459) #21	ENSACAG00000015413 #20	PNPLA2 (ENSACAG00000015353)	RPLP2 (ENSACAG00000036631)	PIDD1 (ENSACAG00000015298)	SLC25A22 (ENSACAG00000028980)	ENSACAG00000015264	ENSACAG00000015262 #22	TALDO1 (ENSACAG00000015239)	EPS8L2 (ENSACAG00000015157) #15	TMEM80 (ENSACAG00000015155) #16	DEAF1 (ENSACAG00000015102)	DRD4 (ENSACAG00000039046)	ENSACAG00000044173	ENSACAG00000038151	ENSACAG00000015070	IRF7 (ENSACAG00000015053)	ENSACAG00000015010	RASSF7 (ENSACAG00000014995)	ENSACAG00000038000	ENSACAG00000041462	LRRC56 (ENSACAG00000014957)	HRAS (ENSACAG00000014920)
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000163235.E	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b	ENSGT00390000012069 #23	ENSGT00940000160434	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00940000182115	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00730000112245	ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000164955	ENSGT00940000160931	ENSGT00950000183205.b.b	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492	ENSGT00950000182939.a.b.b
Common wall lizard	MODERN SPECIES		MUC2 (ENSPMRG00000006260)	ENSPMRG00000006437	ENSPMRG00000006471	CHID1 (ENSPMRG00000006484) #23	ENSPMRG00000006496	ENSPMRG00000006508	POLR2L (ENSPMRG00000006512)	CD151 (ENSPMRG00000006521) #21	ENSPMRG00000006529	CRACR2B (ENSPMRG00000006534) #20	PNPLA2 (ENSPMRG00000006540)	RPLP2 (ENSPMRG00000006549)	PIDD1 (ENSPMRG00000006555)	SLC25A22 (ENSPMRG00000006566)	ENSPMRG00000006574	ENSPMRG00000006578 #22	TALDO1 (ENSPMRG00000006585)	EPS8L2 (ENSPMRG00000006595) #15	ENSPMRG00000006604	TMEM80 (ENSPMRG00000006608) #16	DEAF1 (ENSPMRG00000006613)	DRD4 (ENSPMRG00000000105)	ENSPMRG00000000121	ENSPMRG00000000136	IRF7 (ENSPMRG00000000142)	ENSPMRG00000000168	ENSPMRG00000000198	RASSF7 (ENSPMRG00000000246)	ENSPMRG00000000274	LRRC56 (ENSPMRG00000000367)	ENSPMRG00000000399
Argentine black and white tegu	MODERN SPECIES	3	ENSSMRG00000014148	MUC2 (ENSSMRG00000014147)	MUC6 (ENSSMRG00000014146)	AP2A2 (ENSSMRG00000014145)	CHID1 (ENSSMRG00000014144) #23	TSPAN4 (ENSSMRG00000014143)	POLR2L (ENSSMRG00000014142)	CD151 (ENSSMRG00000014141) #21	ENSSMRG00000014140	CRACR2B (ENSSMRG00000014139) #20	PNPLA2 (ENSSMRG00000014137)	ENSSMRG00000014135	PIDD1 (ENSSMRG00000014133)	SLC25A22 (ENSSMRG00000014132)	ENSSMRG00000014130	ENSSMRG00000014129 #22	TALDO1 (ENSSMRG00000014128)	EPS8L2 (ENSSMRG00000013529) #15	TMEM80 (ENSSMRG00000013523) #16	DEAF1 (ENSSMRG00000013522)	DRD4 (ENSSMRG00000013521)	IRF7 (ENSSMRG00000013520)	ENSSMRG00000013519	RASSF7 (ENSSMRG00000013517)	LRRC56 (ENSSMRG00000013516)	HRAS (ENSSMRG00000013514)	ENSSMRG00000013513	ENSSMRG00000013512	RNH1 (ENSSMRG00000013511)	CHKA (ENSSMRG00000013509)	KMT5B (ENSSMRG00000013508)
tuatara	MODERN SPECIES	545									ENSSPUG00000002328	ENSSPUG00000002339	PNPLA2 (ENSSPUG00000002351)	RPLP2 (ENSSPUG00000002361)	PIDD1 (ENSSPUG00000002414)	ENSSPUG00000002658	SLC25A22 (ENSSPUG00000002675)	ENSSPUG00000002703 #22	TALDO1 (ENSSPUG00000002709)	EPS8L2 (ENSSPUG00000002729) #15
Mammalia	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Theria	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Eutheria	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Primates	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Haplorrhini	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Catarrhini	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000156076.a.a.b	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b.e.b	ENSGT00390000012069 #23	ENSGT00940000160434	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a.g.b.k	ENSGT00940000161780	ENSGT00910000147257	ENSGT00940000161196	ENSGT00390000012831.a	ENSGT00940000165047 #22	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00390000002624	ENSGT00940000162463	ENSGT00940000160931	ENSGT00950000183205.a	ENSGT00950000182839.B.b	ENSGT00390000012150	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161492
Orangutan	MODERN SPECIES	2	TOLLIP (ENSPPYG00000031836)	ENSPPYG00000035519	ENSPPYG00000034130	AP2A2 (ENSPPYG00000002893)	CHID1 (ENSPPYG00000002892) #23	TSPAN4 (ENSPPYG00000002890)	POLR2L (ENSPPYG00000031524)	CD151 (ENSPPYG00000002888) #21	CRACR2B (ENSPPYG00000002887) #20	PNPLA2 (ENSPPYG00000002886)	RPLP2 (ENSPPYG00000002885)	PIDD1 (ENSPPYG00000002884)	PANO1 (ENSPPYG00000031553)	SLC25A22 (ENSPPYG00000002883)	CEND1 (ENSPPYG00000002882)	ENSPPYG00000002881 #22	TALDO1 (ENSPPYG00000002880)	EPS8L2 (ENSPPYG00000030823) #15	ENSPPYG00000002878 #16	DEAF1 (ENSPPYG00000002877)	DRD4 (ENSPPYG00000002876)	SCT (ENSPPYG00000002874)	ENSPPYG00000002873	IRF7 (ENSPPYG00000002872)	PHRF1 (ENSPPYG00000002879)	RASSF7 (ENSPPYG00000002871)	LMNTD2 (ENSPPYG00000002870)	LRRC56 (ENSPPYG00000002869)	HRAS (ENSPPYG00000002868)
Strepsirrhini	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Bushbaby	MODERN SPECIES	375	TOLLIP (ENSOGAG00000000520)	ENSOGAG00000030918	ENSOGAG00000011708	MUC6 (ENSOGAG00000005890)	AP2A2 (ENSOGAG00000001903)	CHID1 (ENSOGAG00000029939) #23	TSPAN4 (ENSOGAG00000017117)	POLR2L (ENSOGAG00000024166)	CD151 (ENSOGAG00000001388) #21	CRACR2B (ENSOGAG00000025163) #20	PNPLA2 (ENSOGAG00000016299)	ENSOGAG00000016296	PIDD1 (ENSOGAG00000009918)	SLC25A22 (ENSOGAG00000009913)	CEND1 (ENSOGAG00000033351)	ENSOGAG00000032209 #22	TALDO1 (ENSOGAG00000005673)	EPS8L2 (ENSOGAG00000015408) #15	TMEM80 (ENSOGAG00000015407) #16	DEAF1 (ENSOGAG00000006434)	DRD4 (ENSOGAG00000028174)	CDHR5 (ENSOGAG00000004990)	IRF7 (ENSOGAG00000004986)	PHRF1 (ENSOGAG00000030147)	RASSF7 (ENSOGAG00000034602)	LMNTD2 (ENSOGAG00000004973)	LRRC56 (ENSOGAG00000004971)	HRAS (ENSOGAG00000024846)	ENSOGAG00000003330
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000156076.a.a.b	ENSGT00940000163661	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b	ENSGT00390000012069 #23	ENSGT00940000160434	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a.h	ENSGT00940000161780	ENSGT00940000161196	ENSGT00390000012831	ENSGT00940000165047 #22	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00390000002624	ENSGT00940000162463	ENSGT00940000160931	ENSGT00950000183205.a	ENSGT00950000182839.B.b	ENSGT00390000012150	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161492
Glires	ANCESTRAL SPECIES	1	ENSGT00940000156076.a.a.b	ENSGT00940000163661	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b	ENSGT00390000012069 #23	ENSGT00940000160434	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a.h	ENSGT00940000161780	ENSGT00940000161196	ENSGT00390000012831	ENSGT00940000165047 #22	ENSGT00390000010778	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00390000002624	ENSGT00940000162463	ENSGT00940000160931	ENSGT00950000183205.a	ENSGT00950000182839.B.b	ENSGT00390000012150	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161492
Rodentia	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Lesser Egyptian jerboa	MODERN SPECIES	53	ENSJJAG00000022413	ENSJJAG00000023780	ENSJJAG00000018527	ENSJJAG00000015065	Ap2a2 (ENSJJAG00000017326)	ENSJJAG00000015346 #23	Tspan4 (ENSJJAG00000022878)	ENSJJAG00000011194	Cd151 (ENSJJAG00000017583) #21	Cracr2b (ENSJJAG00000021420) #20	Pnpla2 (ENSJJAG00000010468)	ENSJJAG00000013273	Pidd1 (ENSJJAG00000016475)	ENSJJAG00000023572	Cend1 (ENSJJAG00000001067)	ENSJJAG00000017149 #22	Taldo1 (ENSJJAG00000020195)	Eps8l2 (ENSJJAG00000022807) #15	Tmem80 (ENSJJAG00000002836) #16	Deaf1 (ENSJJAG00000019729)	Drd4 (ENSJJAG00000023314)	Sct (ENSJJAG00000020063)	Cdhr5 (ENSJJAG00000010114)	Irf7 (ENSJJAG00000023599)	ENSJJAG00000010397	ENSJJAG00000021050	Rassf7 (ENSJJAG00000015967)	Lmntd2 (ENSJJAG00000021012)	Lrrc56 (ENSJJAG00000022367)	ENSJJAG00000022529	Rnh1 (ENSJJAG00000023982)
Marsupialia	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000001792	ENSSHAG00000002828	ENSSHAG00000031315	ENSSHAG00000004810	ENSSHAG00000027959	AP2A2 (ENSSHAG00000004492)	ENSSHAG00000003241	ENSSHAG00000031495	POLR2L (ENSSHAG00000030783)	ENSSHAG00000002408 #20	PNPLA2 (ENSSHAG00000027214)	RPLP2 (ENSSHAG00000021151)	PIDD1 (ENSSHAG00000027032)	SLC25A22 (ENSSHAG00000000375)	CEND1 (ENSSHAG00000001429)	ENSSHAG00000031781 #22	TALDO1 (ENSSHAG00000002832)	EPS8L2 (ENSSHAG00000025666) #15	ENSSHAG00000029135 #16	DEAF1 (ENSSHAG00000002042)	DRD4 (ENSSHAG00000023277)	ENSSHAG00000027783	PHRF1 (ENSSHAG00000004316)	ENSSHAG00000024744	ENSSHAG00000004794	ENSSHAG00000005086	HRAS (ENSSHAG00000029073)	ENSSHAG00000006061	ENSSHAG00000006507	PTDSS2 (ENSSHAG00000025887)	SIGIRR (ENSSHAG00000007267)
Diprotodontia	ANCESTRAL SPECIES	27	ENSGT00940000156076.a.a.b	ENSGT00940000156289	ENSGT00940000161708	ENSGT00950000182838.A.a.b	ENSGT00390000012069 #23	ENSGT00940000160434	ENSGT00390000007087	ENSGT00940000157760 #21	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00390000012831	ENSGT00390000010778	ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT01020000232939	ENSGT00940000162463	ENSGT00940000160931	ENSGT00950000183205.a	ENSGT00950000182839.B.b	ENSGT00390000012150	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000161238	ENSGT00940000161492
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00940000165047 #22
koala	MODERN SPECIES	373				ENSPCIG00000032086	AP2A2 (ENSPCIG00000013022)	CHID1 (ENSPCIG00000027359) #23	TSPAN4 (ENSPCIG00000017610)	ENSPCIG00000008250	CD151 (ENSPCIG00000008254) #21	CRACR2B (ENSPCIG00000008257) #20	PNPLA2 (ENSPCIG00000008261)	ENSPCIG00000036128	PIDD1 (ENSPCIG00000008274)	SLC25A22 (ENSPCIG00000008280)	CEND1 (ENSPCIG00000008284)	ENSPCIG00000008289 #22	TALDO1 (ENSPCIG00000008293)	ENSPCIG00000002085	EPS8L2 (ENSPCIG00000016846) #15	ENSPCIG00000031772	DEAF1 (ENSPCIG00000030815)	DRD4 (ENSPCIG00000008296)	ENSPCIG00000008303	ENSPCIG00000008306	ENSPCIG00000008312	PHRF1 (ENSPCIG00000008317)	ENSPCIG00000008329	ENSPCIG00000008350	ENSPCIG00000008353	HRAS (ENSPCIG00000008359)	ENSPCIG00000008440
Opossum	MODERN SPECIES	500																ENSMODG00000019666 #22	TALDO1 (ENSMODG00000019669)
Anura	ANCESTRAL SPECIES	146			ENSGT00940000156289	ENSGT00940000156076.a.a.b.a.a.b	ENSGT00940000161708	ENSGT00950000182838.A.a.b	ENSGT00390000012069 #23	ENSGT00940000160434	ENSGT00390000007087.ec.b	ENSGT00940000157760 #21	ENSGT00440000033504.A #20	ENSGT00940000160155	ENSGT00550000074828.a	ENSGT00940000161780	ENSGT00940000161196	ENSGT00940000165047 #22	ENSGT00390000017361	ENSGT00940000160990 #15	ENSGT00940000153899.a.b #16	ENSGT00940000159701	ENSGT00940000160974.b	ENSGT00940000162463	ENSGT00940000160931	ENSGT00950000183205.b.a.b.b	ENSGT00950000182839.B.b	ENSGT00990000207714	ENSGT00390000001545	ENSGT00940000155653.b
Leishan spiny toad	MODERN SPECIES	1	ENSLLEG00000009463	ENSLLEG00000009717	ENSLLEG00000009781	AP2A2 (ENSLLEG00000010108)	CHID1 (ENSLLEG00000011048) #23	ENSLLEG00000011501	TSPAN4 (ENSLLEG00000011529)	ENSLLEG00000011732	CD151 (ENSLLEG00000011770) #21	CRACR2B (ENSLLEG00000011885) #20	PNPLA2 (ENSLLEG00000011975)	RPLP2 (ENSLLEG00000012109)	ENSLLEG00000012292	ENSLLEG00000012449	SLC25A22 (ENSLLEG00000012656)	ENSLLEG00000012775 #22	TALDO1 (ENSLLEG00000012850)	EPS8L2 (ENSLLEG00000012987) #15	ENSLLEG00000013212	TMEM80 (ENSLLEG00000013263) #16	DEAF1 (ENSLLEG00000013319)	DRD4 (ENSLLEG00000013523)	IRF7 (ENSLLEG00000013597)	ENSLLEG00000013734	ENSLLEG00000013861	RASSF7 (ENSLLEG00000013922)	ENSLLEG00000014040	LRRC56 (ENSLLEG00000014156)	HRAS (ENSLLEG00000014336)	ENSLLEG00000014397	ENSLLEG00000014421
Frog	MODERN SPECIES	4	ENSXETG00000038706	muc2 (ENSXETG00000032037)	muc6 (ENSXETG00000018869)	ap2a2 (ENSXETG00000025765)	chid1 (ENSXETG00000019071) #23	TSPAN4 (ENSXETG00000043813)	ENSXETG00000044407	polr2l.1 (ENSXETG00000025768)	cd151 (ENSXETG00000019035) #21	cracr2b (ENSXETG00000019033) #20	pnpla2 (ENSXETG00000019027)	rplp2 (ENSXETG00000019024)	pidd1 (ENSXETG00000033984)	slc25a22 (ENSXETG00000023334)	ENSXETG00000039718	gatd1 (ENSXETG00000047298) #22	syvn1 (ENSXETG00000023327)	prpf39.2 (ENSXETG00000033731)	mrpl49 (ENSXETG00000031584)	fau (ENSXETG00000026219)	tm7sf2 (ENSXETG00000023319)	sac3d1 (ENSXETG00000033800)	znhit2 (ENSXETG00000023323)	tlrs5 (ENSXETG00000030446)	capn1 (ENSXETG00000023299)	slc22a20p.1 (ENSXETG00000033231)	pola2 (ENSXETG00000023289)	cdc42ep2 (ENSXETG00000023288)	eps8l2 (ENSXETG00000032637) #15	deaf1 (ENSXETG00000033517)	tmem80 (ENSXETG00000035276) #16
Coelacanth	MODERN SPECIES	1110											DARS2 (ENSLACG00000011843)	CENPL (ENSLACG00000011726)	soat1 (ENSLACG00000010964)	KLHL20 (ENSLACG00000010154)	ENSLACG00000009888	gatd1 (ENSLACG00000009577) #22	MRPS14 (ENSLACG00000009527)	TNN (ENSLACG00000008504)	AXDND1 (ENSLACG00000007357)	NPHS2 (ENSLACG00000006682)	TDRD5 (ENSLACG00000005749)