Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000159444	ENSGT00940000162167	ENSGT00940000155935	ENSGT00940000158229 #7	ENSGT00530000063872.A #8	ENSGT01030000234522.C.b.e.a.a.a.b #9	ENSGT01030000234522.C.b.e.a.a.a.a.b #11	ENSGT01030000234522.C.b.e.a.a.a.a.a.a #12	ENSGT00940000154488.B	ENSGT00940000162887 #17	ENSGT00390000012715.a	ENSGT00390000003937 #18	ENSGT00940000155311.C #19	ENSGT00940000160765 #20	ENSGT00940000155445 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506	ENSGT01050000244882.b.c.b #32	ENSGT00950000182824.a.b.b #34	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Sciuridae	ANCESTRAL SPECIES	27	ENSGT00940000162167	ENSGT00940000155935.cb	ENSGT00940000158229 #7	ENSGT00530000063872.A #8	ENSGT01030000234522.C.b.e.a.a.a.b #9	ENSGT01030000234522.C.b.e.a.a.a.a.b #11	ENSGT01030000234522.C.b.e.a.a.a.a.a.a #12	ENSGT00950000182890.D.c.b.a.a.a #15	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #10	ENSGT00940000162887 #17	ENSGT00390000012715.a	ENSGT00390000003937 #18	ENSGT00940000155311.C #19	ENSGT00940000160765 #20	ENSGT00940000155445 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506	ENSGT01050000244882.b.c.b #32	ENSGT00950000182824.a.b.b #34	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Eurasian red squirrel	MODERN SPECIES	156	NSDHL (ENSSVLG00005022122) #7	ZNF185 (ENSSVLG00005022073) #8	PNMA5 (ENSSVLG00005022038) #9	ENSSVLG00005021967 #10	PNMA3 (ENSSVLG00005021940) #11	ENSSVLG00005021915 #12	ENSSVLG00005021891 #13	ENSSVLG00005021871 #14	ENSSVLG00005021782 #15	ENSSVLG00005021735 #16	ZFP92 (ENSSVLG00005021718) #17	HAUS7 (ENSSVLG00005021619) #18	BGN (ENSSVLG00005021572) #19	ATP2B3 (ENSSVLG00005020846) #20	CCNQ (ENSSVLG00005020662) #21	DUSP9 (ENSSVLG00005020621) #22	PNCK (ENSSVLG00005020384) #23	ENSSVLG00005020284 #24	BCAP31 (ENSSVLG00005020208) #25	ABCD1 (ENSSVLG00005020163) #26	ENSSVLG00005020066 #27	SRPK3 (ENSSVLG00005020004) #28	IDH3G (ENSSVLG00005019902) #29	SSR4 (ENSSVLG00005019816) #30	PDZD4 (ENSSVLG00005019686) #31	AVPR2 (ENSSVLG00005019578) #32	ENSSVLG00005019536 #33	ARHGAP4 (ENSSVLG00005019458) #34	NAA10 (ENSSVLG00005019123) #35	RENBP (ENSSVLG00005019023) #36	HCFC1 (ENSSVLG00005018524) #37
Marmotini	ANCESTRAL SPECIES	83								ENSGT00950000182890.D.c.b.a.a.a #15	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #10	ENSGT00940000162887 #17	ENSGT00390000012715.a	ENSGT00390000003937 #18	ENSGT00940000155311.C #19	ENSGT00940000160765 #20	ENSGT00940000155445 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506	ENSGT01050000244882.b.c.b #32	ENSGT00950000182824.a.b.b #34	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Alpin marmot	MODERN SPECIES	541																ENSMMMG00000001424 #22
Marmotini_b	ANCESTRAL SPECIES	124								ENSGT00940000153582.b.a.a.b	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #10	ENSGT00940000162887 #17	ENSGT00390000012715.a	ENSGT00390000003937 #18	ENSGT00940000155311.C #19	ENSGT00940000160765 #20	ENSGT00940000155445 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506	ENSGT01050000244882.b.c.b #32	ENSGT00950000182824.a.b.b #34	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Arctic ground squirrel	MODERN SPECIES	562								ZNF275 (ENSUPAG00010012750)	ENSUPAG00010012742 #10	ZFP92 (ENSUPAG00010012725) #17	TREX2 (ENSUPAG00010012721)	HAUS7 (ENSUPAG00010012697) #18	BGN (ENSUPAG00010012684) #19	ATP2B3 (ENSUPAG00010012590) #20	CCNQ (ENSUPAG00010012574) #21	DUSP9 (ENSUPAG00010012557) #22	PNCK (ENSUPAG00010012527) #23	ENSUPAG00010012523 #24	ABCD1 (ENSUPAG00010012506) #26	ENSUPAG00010012496	ENSUPAG00010012465 #27	SRPK3 (ENSUPAG00010012441) #28	IDH3G (ENSUPAG00010012400) #29	SSR4 (ENSUPAG00010012375) #30	PDZD4 (ENSUPAG00010012358) #31	L1CAM (ENSUPAG00010012204)	AVPR2 (ENSUPAG00010012191) #32	ARHGAP4 (ENSUPAG00010012018) #34	NAA10 (ENSUPAG00010011976) #35	RENBP (ENSUPAG00010011941) #36	HCFC1 (ENSUPAG00010011877) #37
Squirrel	MODERN SPECIES	409						ENSSTOG00000032558	ZNF275 (ENSSTOG00000022633)	ENSSTOG00000033034 #10	ENSSTOG00000029369	ZFP92 (ENSSTOG00000009126) #17	TREX2 (ENSSTOG00000027213)	HAUS7 (ENSSTOG00000022988) #18	BGN (ENSSTOG00000008058) #19	ATP2B3 (ENSSTOG00000008068) #20	CCNQ (ENSSTOG00000008103) #21	DUSP9 (ENSSTOG00000008115) #22	PNCK (ENSSTOG00000008119) #23	ENSSTOG00000026886 #24	BCAP31 (ENSSTOG00000008138) #25	ABCD1 (ENSSTOG00000008153) #26	ENSSTOG00000008188	PLXNB3 (ENSSTOG00000008197) #27	SRPK3 (ENSSTOG00000008233) #28	IDH3G (ENSSTOG00000008261) #29	SSR4 (ENSSTOG00000008278) #30	PDZD4 (ENSSTOG00000021423) #31	L1CAM (ENSSTOG00000008316)	AVPR2 (ENSSTOG00000008352) #32	ARHGAP4 (ENSSTOG00000022503) #34	NAA10 (ENSSTOG00000010237) #35	RENBP (ENSSTOG00000010247) #36
Hystricomorpha	ANCESTRAL SPECIES	54	ENSGT00940000155374	ENSGT00940000161201	ENSGT00940000159444	ENSGT00940000162167	ENSGT00940000155935.eb.a	ENSGT00940000158229 #7	ENSGT00530000063872.A #8	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #10	ENSGT00940000162887 #17	ENSGT00390000012715.a	ENSGT00390000003937 #18	ENSGT00940000155311.C #19	ENSGT00940000160765 #20	ENSGT00940000155445 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506	ENSGT01050000244882.b.c.b #32	ENSGT00950000182824.a.b.b #34	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Hystricomorpha_a	ANCESTRAL SPECIES	61	ENSGT00940000161201	ENSGT00940000154972	ENSGT00940000159444	ENSGT00940000162167	ENSGT00940000155935.eb.a	ENSGT00940000158229 #7	ENSGT00530000063872.A #8	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b #10	ENSGT00940000162887 #17	ENSGT00390000012715.a	ENSGT00390000003937 #18	ENSGT00940000155311.C #19	ENSGT00940000160765 #20	ENSGT00940000155445 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506	ENSGT01050000244882.b.c.b #32	ENSGT00950000182824.a.b.b #34	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Hystricomorpha_b	ANCESTRAL SPECIES	84	ENSGT00940000155374	ENSGT00940000161201	ENSGT00940000154972	ENSGT00940000159444	ENSGT00940000162167	ENSGT00940000155935.eb.a	ENSGT00940000158229 #7	ENSGT00530000063872.A #8	ENSGT00940000154488.B	ENSGT00940000162887 #17	ENSGT00390000012715.a	ENSGT00390000003937 #18	ENSGT00940000155311.C #19	ENSGT00940000160765 #20	ENSGT00940000155445 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506	ENSGT01050000244882.b.c.b #32	ENSGT00950000182824.a.b.b #34	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Degu	MODERN SPECIES	259		ENSODEG00000002731	ENSODEG00000002721	CCSER1 (ENSODEG00000002701)	ENSODEG00000003691	GABRQ (ENSODEG00000003646)	ENSODEG00000003612	NSDHL (ENSODEG00000003563) #7	ENSODEG00000003535	ZFP92 (ENSODEG00000003508) #17	TREX2 (ENSODEG00000019142)	HAUS7 (ENSODEG00000003475) #18	BGN (ENSODEG00000003451) #19	ATP2B3 (ENSODEG00000003358) #20	CCNQ (ENSODEG00000003285) #21	DUSP9 (ENSODEG00000003261) #22	PNCK (ENSODEG00000003252) #23	ENSODEG00000003207 #24	BCAP31 (ENSODEG00000003174) #25	ABCD1 (ENSODEG00000003127) #26	PLXNB3 (ENSODEG00000002965) #27	SRPK3 (ENSODEG00000002869) #28	IDH3G (ENSODEG00000002774) #29	SSR4 (ENSODEG00000002732) #30	PDZD4 (ENSODEG00000005482) #31	L1CAM (ENSODEG00000005259)	ENSODEG00000005204	AVPR2 (ENSODEG00000005166) #32	ARHGAP4 (ENSODEG00000005124) #34	ENSODEG00000005100 #35	RENBP (ENSODEG00000005065) #36
Long-tailed chinchilla	MODERN SPECIES	287									ENSCLAG00000002477	ZFP92 (ENSCLAG00000002658) #17	TREX2 (ENSCLAG00000002698)	HAUS7 (ENSCLAG00000002789) #18	BGN (ENSCLAG00000003040) #19	ATP2B3 (ENSCLAG00000006386) #20	CCNQ (ENSCLAG00000008202) #21	DUSP9 (ENSCLAG00000008316) #22	PNCK (ENSCLAG00000002167) #23	ENSCLAG00000002550 #24	BCAP31 (ENSCLAG00000002843) #25	ABCD1 (ENSCLAG00000001650) #26	PLXNB3 (ENSCLAG00000001828) #27	SRPK3 (ENSCLAG00000001932) #28	IDH3G (ENSCLAG00000002456) #29	SSR4 (ENSCLAG00000002670) #30	PDZD4 (ENSCLAG00000002707) #31	L1CAM (ENSCLAG00000001453)	AVPR2 (ENSCLAG00000002650) #32	ENSCLAG00000001334 #34	NAA10 (ENSCLAG00000001427) #35	RENBP (ENSCLAG00000003810) #36	HCFC1 (ENSCLAG00000004175) #37
Guinea pig	MODERN SPECIES	148							ENSCPOG00000037160	ENSCPOG00000011291	ENSCPOG00000020829 #10	ZFP92 (ENSCPOG00000006654) #17	TREX2 (ENSCPOG00000025702)	HAUS7 (ENSCPOG00000007497) #18	BGN (ENSCPOG00000023628) #19	ATP2B3 (ENSCPOG00000005102) #20	CCNQ (ENSCPOG00000009250) #21	DUSP9 (ENSCPOG00000000114) #22	ENSCPOG00000011710 #24	BCAP31 (ENSCPOG00000008510) #25	ABCD1 (ENSCPOG00000011702) #26	PLXNB3 (ENSCPOG00000006868) #27	SRPK3 (ENSCPOG00000006881) #28	IDH3G (ENSCPOG00000006890) #29	SSR4 (ENSCPOG00000006898) #30	PDZD4 (ENSCPOG00000019482) #31	L1CAM (ENSCPOG00000005519)	AVPR2 (ENSCPOG00000012697) #32	ENSCPOG00000026143 #34	NAA10 (ENSCPOG00000011495) #35	ENSCPOG00000024784 #36	IRAK1 (ENSCPOG00000039151)	MECP2 (ENSCPOG00000012579)
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000033617	ENSHGLG00000045983	ENSHGLG00000047243	ENSHGLG00000045027	ENSHGLG00000000219	ENSHGLG00000035866	ENSHGLG00000032270	ENSHGLG00000046068	ENSHGLG00000045727 #10	ENSHGLG00000035589 #17	TREX2 (ENSHGLG00000008010)	HAUS7 (ENSHGLG00000002908) #18	BGN (ENSHGLG00000004010) #19	ATP2B3 (ENSHGLG00000000642) #20	CCNQ (ENSHGLG00000003517) #21	DUSP9 (ENSHGLG00000004236) #22	PNCK (ENSHGLG00000006098) #23	ENSHGLG00000037294 #24	BCAP31 (ENSHGLG00000000710) #25	ABCD1 (ENSHGLG00000001000) #26	PLXNB3 (ENSHGLG00000002203) #27	IDH3G (ENSHGLG00000000443) #29	SSR4 (ENSHGLG00000001720) #30	PDZD4 (ENSHGLG00000001939) #31	L1CAM (ENSHGLG00000003403)	AVPR2 (ENSHGLG00000006784) #32	ARHGAP4 (ENSHGLG00000000857) #34	NAA10 (ENSHGLG00000002773) #35	RENBP (ENSHGLG00000009835) #36	HCFC1 (ENSHGLG00000001143) #37	IRAK1 (ENSHGLG00000002116)