Rodentia_A ANCESTRAL SPECIES 9 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935 ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##15 ENSGT00940000154488.B #14 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Hystricomorpha ANCESTRAL SPECIES 54 ENSGT00940000155374 ENSGT00940000161201 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935.eb.a ENSGT00940000158229 ENSGT00530000063872.A ENSGT00940000154488.B #14 ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000033617 #7 ENSHGLG00000045983 #8 ENSHGLG00000047243 #9 ENSHGLG00000045027 #10 ENSHGLG00000000219 #11 ENSHGLG00000035866 #12 ENSHGLG00000032270 #13 ENSHGLG00000046068 #14 ENSHGLG00000045727 #15 ENSHGLG00000035589 #16 TREX2 (ENSHGLG00000008010) #17 HAUS7 (ENSHGLG00000002908) #18 BGN (ENSHGLG00000004010) #19 ATP2B3 (ENSHGLG00000000642) #20 CCNQ (ENSHGLG00000003517) #21 DUSP9 (ENSHGLG00000004236) #22 PNCK (ENSHGLG00000006098) #23 ENSHGLG00000037294 #24 BCAP31 (ENSHGLG00000000710) #25 ABCD1 (ENSHGLG00000001000) #26 PLXNB3 (ENSHGLG00000002203) #27 IDH3G (ENSHGLG00000000443) #28 SSR4 (ENSHGLG00000001720) #29 PDZD4 (ENSHGLG00000001939) #30 L1CAM (ENSHGLG00000003403) #31 AVPR2 (ENSHGLG00000006784) #32 ARHGAP4 (ENSHGLG00000000857) #33 NAA10 (ENSHGLG00000002773) #34 RENBP (ENSHGLG00000009835) #35 HCFC1 (ENSHGLG00000001143) #36 IRAK1 (ENSHGLG00000002116) #37 Hystricomorpha_a ANCESTRAL SPECIES 61 ENSGT00940000161201 ENSGT00940000154972 #8 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935.eb.a ENSGT00940000158229 ENSGT00530000063872.A ENSGT00940000154488.B #14 ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Hystricomorpha_b ANCESTRAL SPECIES 84 ENSGT00940000155374 ENSGT00940000161201 ENSGT00940000154972 #8 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935.eb.a ENSGT00940000158229 ENSGT00530000063872.A ENSGT00940000154488.B #14 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Degu MODERN SPECIES 259 ENSODEG00000002731 ENSODEG00000002721 CCSER1 (ENSODEG00000002701) ENSODEG00000003691 GABRQ (ENSODEG00000003646) ENSODEG00000003612 NSDHL (ENSODEG00000003563) ENSODEG00000003535 #14 ZFP92 (ENSODEG00000003508) #16 TREX2 (ENSODEG00000019142) #17 HAUS7 (ENSODEG00000003475) #18 BGN (ENSODEG00000003451) #19 ATP2B3 (ENSODEG00000003358) #20 CCNQ (ENSODEG00000003285) #21 DUSP9 (ENSODEG00000003261) #22 PNCK (ENSODEG00000003252) #23 ENSODEG00000003207 #24 BCAP31 (ENSODEG00000003174) #25 ABCD1 (ENSODEG00000003127) #26 PLXNB3 (ENSODEG00000002965) #27 SRPK3 (ENSODEG00000002869) IDH3G (ENSODEG00000002774) #28 SSR4 (ENSODEG00000002732) #29 PDZD4 (ENSODEG00000005482) #30 L1CAM (ENSODEG00000005259) #31 ENSODEG00000005204 AVPR2 (ENSODEG00000005166) #32 ARHGAP4 (ENSODEG00000005124) #33 ENSODEG00000005100 #34 RENBP (ENSODEG00000005065) #35 Long-tailed chinchilla MODERN SPECIES 287 ENSCLAG00000002477 #14 ZFP92 (ENSCLAG00000002658) #16 TREX2 (ENSCLAG00000002698) #17 HAUS7 (ENSCLAG00000002789) #18 BGN (ENSCLAG00000003040) #19 ATP2B3 (ENSCLAG00000006386) #20 CCNQ (ENSCLAG00000008202) #21 DUSP9 (ENSCLAG00000008316) #22 PNCK (ENSCLAG00000002167) #23 ENSCLAG00000002550 #24 BCAP31 (ENSCLAG00000002843) #25 ABCD1 (ENSCLAG00000001650) #26 PLXNB3 (ENSCLAG00000001828) #27 SRPK3 (ENSCLAG00000001932) IDH3G (ENSCLAG00000002456) #28 SSR4 (ENSCLAG00000002670) #29 PDZD4 (ENSCLAG00000002707) #30 L1CAM (ENSCLAG00000001453) #31 AVPR2 (ENSCLAG00000002650) #32 ENSCLAG00000001334 #33 NAA10 (ENSCLAG00000001427) #34 RENBP (ENSCLAG00000003810) #35 HCFC1 (ENSCLAG00000004175) #36 Guinea pig MODERN SPECIES 148 ENSCPOG00000037160 ENSCPOG00000011291 #14 ENSCPOG00000020829 #15 ZFP92 (ENSCPOG00000006654) #16 TREX2 (ENSCPOG00000025702) #17 HAUS7 (ENSCPOG00000007497) #18 BGN (ENSCPOG00000023628) #19 ATP2B3 (ENSCPOG00000005102) #20 CCNQ (ENSCPOG00000009250) #21 DUSP9 (ENSCPOG00000000114) #22 ENSCPOG00000011710 #24 BCAP31 (ENSCPOG00000008510) #25 ABCD1 (ENSCPOG00000011702) #26 PLXNB3 (ENSCPOG00000006868) #27 SRPK3 (ENSCPOG00000006881) IDH3G (ENSCPOG00000006890) #28 SSR4 (ENSCPOG00000006898) #29 PDZD4 (ENSCPOG00000019482) #30 L1CAM (ENSCPOG00000005519) #31 AVPR2 (ENSCPOG00000012697) #32 ENSCPOG00000026143 #33 NAA10 (ENSCPOG00000011495) #34 ENSCPOG00000024784 #35 IRAK1 (ENSCPOG00000039151) #37 MECP2 (ENSCPOG00000012579) Sciuridae ANCESTRAL SPECIES 27 ENSGT00940000162167 ENSGT00940000155935.cb ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##15 ENSGT00950000182890.D.c.b.a.a.a ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Eurasian red squirrel MODERN SPECIES 156 NSDHL (ENSSVLG00005022122) ZNF185 (ENSSVLG00005022073) PNMA5 (ENSSVLG00005022038) ##15 ENSSVLG00005021967 #15 PNMA3 (ENSSVLG00005021940) ##15 ENSSVLG00005021915 ##15 ENSSVLG00005021891 ##15 ENSSVLG00005021871 ENSSVLG00005021782 ENSSVLG00005021735 #15 ZFP92 (ENSSVLG00005021718) #16 HAUS7 (ENSSVLG00005021619) #18 BGN (ENSSVLG00005021572) #19 ATP2B3 (ENSSVLG00005020846) #20 CCNQ (ENSSVLG00005020662) #21 DUSP9 (ENSSVLG00005020621) #22 PNCK (ENSSVLG00005020384) #23 ENSSVLG00005020284 #24 BCAP31 (ENSSVLG00005020208) #25 ABCD1 (ENSSVLG00005020163) #26 ENSSVLG00005020066 #27 SRPK3 (ENSSVLG00005020004) IDH3G (ENSSVLG00005019902) #28 SSR4 (ENSSVLG00005019816) #29 PDZD4 (ENSSVLG00005019686) #30 AVPR2 (ENSSVLG00005019578) #32 ENSSVLG00005019536 ARHGAP4 (ENSSVLG00005019458) #33 NAA10 (ENSSVLG00005019123) #34 RENBP (ENSSVLG00005019023) #35 HCFC1 (ENSSVLG00005018524) #36 Marmotini ANCESTRAL SPECIES 83 ENSGT00950000182890.D.c.b.a.a.a ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Alpin marmot MODERN SPECIES 541 ENSMMMG00000001424 #22 Marmotini_b ANCESTRAL SPECIES 124 ENSGT00940000153582.b.a.a.b ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Arctic ground squirrel MODERN SPECIES 562 ZNF275 (ENSUPAG00010012750) ENSUPAG00010012742 #15 ZFP92 (ENSUPAG00010012725) #16 TREX2 (ENSUPAG00010012721) #17 HAUS7 (ENSUPAG00010012697) #18 BGN (ENSUPAG00010012684) #19 ATP2B3 (ENSUPAG00010012590) #20 CCNQ (ENSUPAG00010012574) #21 DUSP9 (ENSUPAG00010012557) #22 PNCK (ENSUPAG00010012527) #23 ENSUPAG00010012523 #24 ABCD1 (ENSUPAG00010012506) #26 ENSUPAG00010012496 ENSUPAG00010012465 #27 SRPK3 (ENSUPAG00010012441) IDH3G (ENSUPAG00010012400) #28 SSR4 (ENSUPAG00010012375) #29 PDZD4 (ENSUPAG00010012358) #30 L1CAM (ENSUPAG00010012204) #31 AVPR2 (ENSUPAG00010012191) #32 ARHGAP4 (ENSUPAG00010012018) #33 NAA10 (ENSUPAG00010011976) #34 RENBP (ENSUPAG00010011941) #35 HCFC1 (ENSUPAG00010011877) #36 Squirrel MODERN SPECIES 409 ENSSTOG00000032558 ZNF275 (ENSSTOG00000022633) ENSSTOG00000033034 #15 ENSSTOG00000029369 ZFP92 (ENSSTOG00000009126) #16 TREX2 (ENSSTOG00000027213) #17 HAUS7 (ENSSTOG00000022988) #18 BGN (ENSSTOG00000008058) #19 ATP2B3 (ENSSTOG00000008068) #20 CCNQ (ENSSTOG00000008103) #21 DUSP9 (ENSSTOG00000008115) #22 PNCK (ENSSTOG00000008119) #23 ENSSTOG00000026886 #24 BCAP31 (ENSSTOG00000008138) #25 ABCD1 (ENSSTOG00000008153) #26 ENSSTOG00000008188 PLXNB3 (ENSSTOG00000008197) #27 SRPK3 (ENSSTOG00000008233) IDH3G (ENSSTOG00000008261) #28 SSR4 (ENSSTOG00000008278) #29 PDZD4 (ENSSTOG00000021423) #30 L1CAM (ENSSTOG00000008316) #31 AVPR2 (ENSSTOG00000008352) #32 ARHGAP4 (ENSSTOG00000022503) #33 NAA10 (ENSSTOG00000010237) #34 RENBP (ENSSTOG00000010247) #35