Euarchontoglires_A ANCESTRAL SPECIES 11 ENSGT00940000155935 ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##15 ENSGT00950000182890.D.c.b.a.a.a ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000154488.B #14 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Glires ANCESTRAL SPECIES 10 ENSGT00940000155935 ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##15 ENSGT00950000182890.D.c.b.a.a.a ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000154488.B #14 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Rodentia ANCESTRAL SPECIES 10 ENSGT00940000155935 ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##15 ENSGT00950000182890.D.c.b.a.a.a ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000154488.B #14 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Rodentia_A ANCESTRAL SPECIES 9 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935 ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##15 ENSGT00940000154488.B #14 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Hystricomorpha ANCESTRAL SPECIES 54 ENSGT00940000155374 ENSGT00940000161201 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935.eb.a ENSGT00940000158229 ENSGT00530000063872.A ENSGT00940000154488.B #14 ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000033617 #7 ENSHGLG00000045983 #8 ENSHGLG00000047243 #9 ENSHGLG00000045027 #10 ENSHGLG00000000219 #11 ENSHGLG00000035866 #12 ENSHGLG00000032270 #13 ENSHGLG00000046068 #14 ENSHGLG00000045727 #15 ENSHGLG00000035589 #16 TREX2 (ENSHGLG00000008010) #17 HAUS7 (ENSHGLG00000002908) #18 BGN (ENSHGLG00000004010) #19 ATP2B3 (ENSHGLG00000000642) #20 CCNQ (ENSHGLG00000003517) #21 DUSP9 (ENSHGLG00000004236) #22 PNCK (ENSHGLG00000006098) #23 ENSHGLG00000037294 #24 BCAP31 (ENSHGLG00000000710) #25 ABCD1 (ENSHGLG00000001000) #26 PLXNB3 (ENSHGLG00000002203) #27 IDH3G (ENSHGLG00000000443) #28 SSR4 (ENSHGLG00000001720) #29 PDZD4 (ENSHGLG00000001939) #30 L1CAM (ENSHGLG00000003403) #31 AVPR2 (ENSHGLG00000006784) #32 ARHGAP4 (ENSHGLG00000000857) #33 NAA10 (ENSHGLG00000002773) #34 RENBP (ENSHGLG00000009835) #35 HCFC1 (ENSHGLG00000001143) #36 IRAK1 (ENSHGLG00000002116) #37 Hystricomorpha_a ANCESTRAL SPECIES 61 ENSGT00940000161201 ENSGT00940000154972 #8 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935.eb.a ENSGT00940000158229 ENSGT00530000063872.A ENSGT00940000154488.B #14 ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Hystricomorpha_b ANCESTRAL SPECIES 84 ENSGT00940000155374 ENSGT00940000161201 ENSGT00940000154972 #8 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935.eb.a ENSGT00940000158229 ENSGT00530000063872.A ENSGT00940000154488.B #14 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Degu MODERN SPECIES 259 ENSODEG00000002731 ENSODEG00000002721 CCSER1 (ENSODEG00000002701) ENSODEG00000003691 GABRQ (ENSODEG00000003646) ENSODEG00000003612 NSDHL (ENSODEG00000003563) ENSODEG00000003535 #14 ZFP92 (ENSODEG00000003508) #16 TREX2 (ENSODEG00000019142) #17 HAUS7 (ENSODEG00000003475) #18 BGN (ENSODEG00000003451) #19 ATP2B3 (ENSODEG00000003358) #20 CCNQ (ENSODEG00000003285) #21 DUSP9 (ENSODEG00000003261) #22 PNCK (ENSODEG00000003252) #23 ENSODEG00000003207 #24 BCAP31 (ENSODEG00000003174) #25 ABCD1 (ENSODEG00000003127) #26 PLXNB3 (ENSODEG00000002965) #27 SRPK3 (ENSODEG00000002869) IDH3G (ENSODEG00000002774) #28 SSR4 (ENSODEG00000002732) #29 PDZD4 (ENSODEG00000005482) #30 L1CAM (ENSODEG00000005259) #31 ENSODEG00000005204 AVPR2 (ENSODEG00000005166) #32 ARHGAP4 (ENSODEG00000005124) #33 ENSODEG00000005100 #34 RENBP (ENSODEG00000005065) #35 Long-tailed chinchilla MODERN SPECIES 287 ENSCLAG00000002477 #14 ZFP92 (ENSCLAG00000002658) #16 TREX2 (ENSCLAG00000002698) #17 HAUS7 (ENSCLAG00000002789) #18 BGN (ENSCLAG00000003040) #19 ATP2B3 (ENSCLAG00000006386) #20 CCNQ (ENSCLAG00000008202) #21 DUSP9 (ENSCLAG00000008316) #22 PNCK (ENSCLAG00000002167) #23 ENSCLAG00000002550 #24 BCAP31 (ENSCLAG00000002843) #25 ABCD1 (ENSCLAG00000001650) #26 PLXNB3 (ENSCLAG00000001828) #27 SRPK3 (ENSCLAG00000001932) IDH3G (ENSCLAG00000002456) #28 SSR4 (ENSCLAG00000002670) #29 PDZD4 (ENSCLAG00000002707) #30 L1CAM (ENSCLAG00000001453) #31 AVPR2 (ENSCLAG00000002650) #32 ENSCLAG00000001334 #33 NAA10 (ENSCLAG00000001427) #34 RENBP (ENSCLAG00000003810) #35 HCFC1 (ENSCLAG00000004175) #36 Guinea pig MODERN SPECIES 148 ENSCPOG00000037160 ENSCPOG00000011291 #14 ENSCPOG00000020829 #15 ZFP92 (ENSCPOG00000006654) #16 TREX2 (ENSCPOG00000025702) #17 HAUS7 (ENSCPOG00000007497) #18 BGN (ENSCPOG00000023628) #19 ATP2B3 (ENSCPOG00000005102) #20 CCNQ (ENSCPOG00000009250) #21 DUSP9 (ENSCPOG00000000114) #22 ENSCPOG00000011710 #24 BCAP31 (ENSCPOG00000008510) #25 ABCD1 (ENSCPOG00000011702) #26 PLXNB3 (ENSCPOG00000006868) #27 SRPK3 (ENSCPOG00000006881) IDH3G (ENSCPOG00000006890) #28 SSR4 (ENSCPOG00000006898) #29 PDZD4 (ENSCPOG00000019482) #30 L1CAM (ENSCPOG00000005519) #31 AVPR2 (ENSCPOG00000012697) #32 ENSCPOG00000026143 #33 NAA10 (ENSCPOG00000011495) #34 ENSCPOG00000024784 #35 IRAK1 (ENSCPOG00000039151) #37 MECP2 (ENSCPOG00000012579) Sciuridae ANCESTRAL SPECIES 27 ENSGT00940000162167 ENSGT00940000155935.cb ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##15 ENSGT00950000182890.D.c.b.a.a.a ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Eurasian red squirrel MODERN SPECIES 156 NSDHL (ENSSVLG00005022122) ZNF185 (ENSSVLG00005022073) PNMA5 (ENSSVLG00005022038) ##15 ENSSVLG00005021967 #15 PNMA3 (ENSSVLG00005021940) ##15 ENSSVLG00005021915 ##15 ENSSVLG00005021891 ##15 ENSSVLG00005021871 ENSSVLG00005021782 ENSSVLG00005021735 #15 ZFP92 (ENSSVLG00005021718) #16 HAUS7 (ENSSVLG00005021619) #18 BGN (ENSSVLG00005021572) #19 ATP2B3 (ENSSVLG00005020846) #20 CCNQ (ENSSVLG00005020662) #21 DUSP9 (ENSSVLG00005020621) #22 PNCK (ENSSVLG00005020384) #23 ENSSVLG00005020284 #24 BCAP31 (ENSSVLG00005020208) #25 ABCD1 (ENSSVLG00005020163) #26 ENSSVLG00005020066 #27 SRPK3 (ENSSVLG00005020004) IDH3G (ENSSVLG00005019902) #28 SSR4 (ENSSVLG00005019816) #29 PDZD4 (ENSSVLG00005019686) #30 AVPR2 (ENSSVLG00005019578) #32 ENSSVLG00005019536 ARHGAP4 (ENSSVLG00005019458) #33 NAA10 (ENSSVLG00005019123) #34 RENBP (ENSSVLG00005019023) #35 HCFC1 (ENSSVLG00005018524) #36 Marmotini ANCESTRAL SPECIES 83 ENSGT00950000182890.D.c.b.a.a.a ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Alpin marmot MODERN SPECIES 541 ENSMMMG00000001424 #22 Marmotini_b ANCESTRAL SPECIES 124 ENSGT00940000153582.b.a.a.b ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Arctic ground squirrel MODERN SPECIES 562 ZNF275 (ENSUPAG00010012750) ENSUPAG00010012742 #15 ZFP92 (ENSUPAG00010012725) #16 TREX2 (ENSUPAG00010012721) #17 HAUS7 (ENSUPAG00010012697) #18 BGN (ENSUPAG00010012684) #19 ATP2B3 (ENSUPAG00010012590) #20 CCNQ (ENSUPAG00010012574) #21 DUSP9 (ENSUPAG00010012557) #22 PNCK (ENSUPAG00010012527) #23 ENSUPAG00010012523 #24 ABCD1 (ENSUPAG00010012506) #26 ENSUPAG00010012496 ENSUPAG00010012465 #27 SRPK3 (ENSUPAG00010012441) IDH3G (ENSUPAG00010012400) #28 SSR4 (ENSUPAG00010012375) #29 PDZD4 (ENSUPAG00010012358) #30 L1CAM (ENSUPAG00010012204) #31 AVPR2 (ENSUPAG00010012191) #32 ARHGAP4 (ENSUPAG00010012018) #33 NAA10 (ENSUPAG00010011976) #34 RENBP (ENSUPAG00010011941) #35 HCFC1 (ENSUPAG00010011877) #36 Squirrel MODERN SPECIES 409 ENSSTOG00000032558 ZNF275 (ENSSTOG00000022633) ENSSTOG00000033034 #15 ENSSTOG00000029369 ZFP92 (ENSSTOG00000009126) #16 TREX2 (ENSSTOG00000027213) #17 HAUS7 (ENSSTOG00000022988) #18 BGN (ENSSTOG00000008058) #19 ATP2B3 (ENSSTOG00000008068) #20 CCNQ (ENSSTOG00000008103) #21 DUSP9 (ENSSTOG00000008115) #22 PNCK (ENSSTOG00000008119) #23 ENSSTOG00000026886 #24 BCAP31 (ENSSTOG00000008138) #25 ABCD1 (ENSSTOG00000008153) #26 ENSSTOG00000008188 PLXNB3 (ENSSTOG00000008197) #27 SRPK3 (ENSSTOG00000008233) IDH3G (ENSSTOG00000008261) #28 SSR4 (ENSSTOG00000008278) #29 PDZD4 (ENSSTOG00000021423) #30 L1CAM (ENSSTOG00000008316) #31 AVPR2 (ENSSTOG00000008352) #32 ARHGAP4 (ENSSTOG00000022503) #33 NAA10 (ENSSTOG00000010237) #34 RENBP (ENSSTOG00000010247) #35 Rodentia_B ANCESTRAL SPECIES 16 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935 ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT00950000182890.D.c.b.a.a.a ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Myomorpha ANCESTRAL SPECIES 6 ENSGT00940000154972 #8 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935 ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT00950000182890.D.c.b.a.a.a ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Muroidea ANCESTRAL SPECIES 13 ENSGT00940000154972.eb.a #8 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935 ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT00950000182890.D.c.b.a.a.a ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Muroidea_A ANCESTRAL SPECIES 7 ENSGT00940000154972.eb.a #8 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935 ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT00950000182890.D.c.b.a.a.a ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Cricetidae ANCESTRAL SPECIES 8 ENSGT00390000006832 ENSGT00940000155374 ENSGT00940000161201 ENSGT00940000154972.eb.a #8 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935 ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Cricetinae ANCESTRAL SPECIES 46 ENSGT00390000000062.x.b.k.b ENSGT00390000016992 ENSGT00940000163020 ENSGT00940000154488.B #14 ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00940000161383 #36 ENSGT00940000160502 #37 Golden Hamster MODERN SPECIES 857 ENSMAUG00000019268 #14 Gm18336 (ENSMAUG00000017654) #15 Zfp92 (ENSMAUG00000006204) #16 Trex2 (ENSMAUG00000006617) #17 Haus7 (ENSMAUG00000020073) #18 Bgn (ENSMAUG00000020050) #19 Atp2b3 (ENSMAUG00000009992) #20 Dusp9 (ENSMAUG00000020993) #22 Pnck (ENSMAUG00000017486) #23 Slc6a8 (ENSMAUG00000017007) #24 Bcap31 (ENSMAUG00000009135) #25 Abcd1 (ENSMAUG00000020103) #26 Plxnb3 (ENSMAUG00000005458) #27 Srpk3 (ENSMAUG00000009935) Idh3g (ENSMAUG00000000657) #28 ENSMAUG00000015090 #29 Pdzd4 (ENSMAUG00000000466) #30 L1cam (ENSMAUG00000008575) #31 Avpr2 (ENSMAUG00000001098) #32 Arhgap4 (ENSMAUG00000020011) #33 Naa10 (ENSMAUG00000019021) #34 Hcfc1 (ENSMAUG00000018495) #36 Irak1 (ENSMAUG00000002430) #37 Chinese hamster chok1gshd MODERN SPECIES 16 Nsdhl (ENSCGRG00001015462) Zfp185 (ENSCGRG00001021834) ENSCGRG00001024731 ENSCGRG00001005230 ENSCGRG00001023020 F8a (ENSCGRG00001010823) ENSCGRG00001011071 Gm45015 (ENSCGRG00001000704) #15 ENSCGRG00001020684 #14 Gm18336 (ENSCGRG00001009753) #15 Zfp92 (ENSCGRG00001024615) #16 Trex2 (ENSCGRG00001012110) #17 Haus7 (ENSCGRG00001014259) #18 Bgn (ENSCGRG00001004273) #19 Atp2b3 (ENSCGRG00001013946) #20 Dusp9 (ENSCGRG00001015656) #22 Pnck (ENSCGRG00001015654) #23 Slc6a8 (ENSCGRG00001013941) #24 ENSCGRG00001022627 #25 Abcd1 (ENSCGRG00001017773) #26 Plxnb3 (ENSCGRG00001024658) #27 Srpk3 (ENSCGRG00001005920) Idh3g (ENSCGRG00001012756) #28 Ssr4 (ENSCGRG00001019369) #29 Pdzd4 (ENSCGRG00001012732) #30 L1cam (ENSCGRG00001020541) #31 Avpr2 (ENSCGRG00001010799) #32 Arhgap4 (ENSCGRG00001023232) #33 Naa10 (ENSCGRG00001012595) #34 Hcfc1 (ENSCGRG00001019535) #36 Irak1 (ENSCGRG00001013928) #37 Cricetidae_B ANCESTRAL SPECIES 28 ENSGT00940000161201 ENSGT00940000154972.eb.a #8 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935 ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT00950000182890.D.c.b.a.a.a ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v.i #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Prairie vole MODERN SPECIES 212 ENSMOCG00000008885 Gm18336 (ENSMOCG00000000683) #15 Zfp92 (ENSMOCG00000015417) #16 Trex2 (ENSMOCG00000001305) #17 ENSMOCG00000016829 #18 Bgn (ENSMOCG00000005439) #19 Atp2b3 (ENSMOCG00000016837) #20 Dusp9 (ENSMOCG00000014149) #22 Pnck (ENSMOCG00000005305) #23 Slc6a8 (ENSMOCG00000013922) #24 Bcap31 (ENSMOCG00000011355) #25 Abcd1 (ENSMOCG00000020381) #26 Plxnb3 (ENSMOCG00000016754) #27 Srpk3 (ENSMOCG00000000270) Idh3g (ENSMOCG00000013265) #28 Ssr4 (ENSMOCG00000000481) #29 Pdzd4 (ENSMOCG00000013342) #30 L1cam (ENSMOCG00000018901) #31 Avpr2 (ENSMOCG00000012257) #32 Arhgap4 (ENSMOCG00000010795) #33 Naa10 (ENSMOCG00000011968) #34 Renbp (ENSMOCG00000021137) #35 Hcfc1 (ENSMOCG00000018390) #36 Northern American deer mouse MODERN SPECIES 475 Gabrq (ENSPEMG00000024127) Cetn2 (ENSPEMG00000009693) Nsdhl (ENSPEMG00000028251) ENSPEMG00000016866 Zfp185 (ENSPEMG00000001172) Pnma5 (ENSPEMG00000029060) ##15 ENSPEMG00000029415 ##15 ENSPEMG00000014112 #15 Zfp275 (ENSPEMG00000028598) ENSPEMG00000002119 #15 Zfp92 (ENSPEMG00000029357) #16 Trex2 (ENSPEMG00000004918) #17 Haus7 (ENSPEMG00000011467) #18 Bgn (ENSPEMG00000017164) #19 Atp2b3 (ENSPEMG00000001607) #20 Dusp9 (ENSPEMG00000009249) #22 Pnck (ENSPEMG00000018929) #23 ENSPEMG00000001387 #24 Bcap31 (ENSPEMG00000018100) #25 Abcd1 (ENSPEMG00000010748) #26 Plxnb3 (ENSPEMG00000019022) #27 Srpk3 (ENSPEMG00000012149) Idh3g (ENSPEMG00000011232) #28 Ssr4 (ENSPEMG00000008760) #29 Pdzd4 (ENSPEMG00000008494) #30 L1cam (ENSPEMG00000011592) #31 Avpr2 (ENSPEMG00000008325) #32 Arhgap4 (ENSPEMG00000019112) #33 ENSPEMG00000010870 #35 Hcfc1 (ENSPEMG00000011837) #36 Irak1 (ENSPEMG00000001469) #37 Murinae ANCESTRAL SPECIES 14 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935 ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT00390000000062.x.b.k.a ENSGT00950000182890.D.c.b.a.a.a ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Mus ANCESTRAL SPECIES 9 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935 ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT00390000000062.x.b.k.a ENSGT00950000182890.D.c.b.a.a.a ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Mus_A ANCESTRAL SPECIES 15 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935 ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT00390000000062.x.b.k.a ENSGT00950000182890.D.c.b.a.a.a ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Mus_B ANCESTRAL SPECIES 14 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935 ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT00390000000062.x.b.k.a ENSGT00950000182890.D.c.b.a.a.a ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 Mus_C ANCESTRAL SPECIES 27 ENSGT00940000154972.eb.a #8 ENSGT00940000159444 ENSGT00940000162167 ENSGT00940000155935 ENSGT00940000158229 ENSGT00530000063872.A ENSGT01030000234522.C.b.e.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.b ##15 ENSGT01030000234522.C.b.e.a.a.a.a.a.b #15 ENSGT00950000182890.D.c.b.a.a.a ENSGT00940000162887 #16 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT00950000182955.a.b.a #26 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 spretus MODERN SPECIES 19 Magea10 (MGP_SPRETEiJ_G0034293) #8 Gabra3 (MGP_SPRETEiJ_G0034294) Gabrq (MGP_SPRETEiJ_G0034295) Cetn2 (MGP_SPRETEiJ_G0034296) Nsdhl (MGP_SPRETEiJ_G0034297) Zfp185 (MGP_SPRETEiJ_G0034298) Pnma5 (MGP_SPRETEiJ_G0034299) ##15 Pnma3 (MGP_SPRETEiJ_G0034300) ##15 F8a (MGP_SPRETEiJ_G0034301) Zfp275 (MGP_SPRETEiJ_G0034302) Zfp92 (MGP_SPRETEiJ_G0034303) #16 Trex2 (MGP_SPRETEiJ_G0034304) #17 Haus7 (MGP_SPRETEiJ_G0034305) #18 Bgn (MGP_SPRETEiJ_G0034306) #19 Atp2b3 (MGP_SPRETEiJ_G0034307) #20 Dusp9 (MGP_SPRETEiJ_G0034308) #22 Pnck (MGP_SPRETEiJ_G0034309) #23 Slc6a8 (MGP_SPRETEiJ_G0034310) #24 Bcap31 (MGP_SPRETEiJ_G0034311) #25 Abcd1 (MGP_SPRETEiJ_G0034312) #26 Plxnb3 (MGP_SPRETEiJ_G0034313) #27 Srpk3 (MGP_SPRETEiJ_G0034314) Idh3g (MGP_SPRETEiJ_G0034315) #28 Ssr4 (MGP_SPRETEiJ_G0034316) #29 Pdzd4 (MGP_SPRETEiJ_G0034317) #30 L1cam (MGP_SPRETEiJ_G0034318) #31 Arhgap4 (MGP_SPRETEiJ_G0034319) #33 Avpr2 (MGP_SPRETEiJ_G0034320) #32 Naa10 (MGP_SPRETEiJ_G0034321) #34 Renbp (MGP_SPRETEiJ_G0034322) #35 Hcfc1 (MGP_SPRETEiJ_G0034323) #36 Steppe mouse MODERN SPECIES 886 Dusp9 (ENSMSIG00000007104) #22 Mouse MODERN SPECIES 37 Spin2d (ENSMUSG00000079566) Xlr3b (ENSMUSG00000073125) Xlr4b (ENSMUSG00000067768) F8a (ENSMUSG00000078317) Xlr4c (ENSMUSG00000031362) Xlr3c (ENSMUSG00000058147) Xlr5c (ENSMUSG00000067764) Gm45015 (ENSMUSG00000109368) #15 Zfp275 (ENSMUSG00000031365) Gm18336 (ENSMUSG00000096966) #15 Zfp92 (ENSMUSG00000031374) #16 Trex2 (ENSMUSG00000031372) #17 Haus7 (ENSMUSG00000031371) #18 Bgn (ENSMUSG00000031375) #19 Atp2b3 (ENSMUSG00000031376) #20 Dusp9 (ENSMUSG00000031383) #22 Pnck (ENSMUSG00000002012) #23 Slc6a8 (ENSMUSG00000019558) #24 Bcap31 (ENSMUSG00000002015) #25 Abcd1 (ENSMUSG00000031378) #26 Plxnb3 (ENSMUSG00000031385) #27 Srpk3 (ENSMUSG00000002007) Idh3g (ENSMUSG00000002010) #28 Ssr4 (ENSMUSG00000002014) #29 Pdzd4 (ENSMUSG00000002006) #30 L1cam (ENSMUSG00000031391) #31 Arhgap4 (ENSMUSG00000031389) #33 Avpr2 (ENSMUSG00000031390) #32 Naa10 (ENSMUSG00000031388) #34 Renbp (ENSMUSG00000031387) #35 Hcfc1 (ENSMUSG00000031386) #36 Ryukyu mouse MODERN SPECIES 19 Magea4 (MGP_CAROLIEiJ_G0033138) #8 Gabre (MGP_CAROLIEiJ_G0033139) Magea10 (MGP_CAROLIEiJ_G0033140) #8 Gabra3 (MGP_CAROLIEiJ_G0033141) Gabrq (MGP_CAROLIEiJ_G0033142) Cetn2 (MGP_CAROLIEiJ_G0033143) Nsdhl (MGP_CAROLIEiJ_G0033144) Zfp185 (MGP_CAROLIEiJ_G0033145) Pnma5 (MGP_CAROLIEiJ_G0033146) ##15 Zfp275 (MGP_CAROLIEiJ_G0033147) Zfp92 (MGP_CAROLIEiJ_G0033148) #16 Trex2 (MGP_CAROLIEiJ_G0033149) #17 Haus7 (MGP_CAROLIEiJ_G0033150) #18 Bgn (MGP_CAROLIEiJ_G0033151) #19 Atp2b3 (MGP_CAROLIEiJ_G0033152) #20 Dusp9 (MGP_CAROLIEiJ_G0033153) #22 Pnck (MGP_CAROLIEiJ_G0033154) #23 Slc6a8 (MGP_CAROLIEiJ_G0033155) #24 Bcap31 (MGP_CAROLIEiJ_G0033156) #25 Abcd1 (MGP_CAROLIEiJ_G0033157) #26 Plxnb3 (MGP_CAROLIEiJ_G0033158) #27 Srpk3 (MGP_CAROLIEiJ_G0033159) Idh3g (MGP_CAROLIEiJ_G0033160) #28 Ssr4 (MGP_CAROLIEiJ_G0033161) #29 Pdzd4 (MGP_CAROLIEiJ_G0033162) #30 L1cam (MGP_CAROLIEiJ_G0033163) #31 Arhgap4 (MGP_CAROLIEiJ_G0033164) #33 Avpr2 (MGP_CAROLIEiJ_G0033165) #32 Naa10 (MGP_CAROLIEiJ_G0033166) #34 Renbp (MGP_CAROLIEiJ_G0033167) #35 Hcfc1 (MGP_CAROLIEiJ_G0033168) #36 Shrew mouse MODERN SPECIES 23 Magea10 (MGP_PahariEiJ_G0031681) #8 Gabra3 (MGP_PahariEiJ_G0031682) Gabrq (MGP_PahariEiJ_G0031683) Cetn2 (MGP_PahariEiJ_G0031684) Nsdhl (MGP_PahariEiJ_G0031685) Zfp185 (MGP_PahariEiJ_G0031686) MGP_PahariEiJ_G0031687 MGP_PahariEiJ_G0031688 MGP_PahariEiJ_G0031689 Zfp275 (MGP_PahariEiJ_G0031690) MGP_PahariEiJ_G0031691 #16 Trex2 (MGP_PahariEiJ_G0031692) #17 Haus7 (MGP_PahariEiJ_G0031693) #18 Bgn (MGP_PahariEiJ_G0031694) #19 Atp2b3 (MGP_PahariEiJ_G0031695) #20 Dusp9 (MGP_PahariEiJ_G0031696) #22 Pnck (MGP_PahariEiJ_G0031697) #23 Slc6a8 (MGP_PahariEiJ_G0031698) #24 Bcap31 (MGP_PahariEiJ_G0031699) #25 Abcd1 (MGP_PahariEiJ_G0031700) #26 Plxnb3 (MGP_PahariEiJ_G0031701) #27 Srpk3 (MGP_PahariEiJ_G0031702) Idh3g (MGP_PahariEiJ_G0031703) #28 Ssr4 (MGP_PahariEiJ_G0031704) #29 Pdzd4 (MGP_PahariEiJ_G0031705) #30 L1cam (MGP_PahariEiJ_G0031706) #31 Arhgap4 (MGP_PahariEiJ_G0031707) #33 Avpr2 (MGP_PahariEiJ_G0031708) #32 Naa10 (MGP_PahariEiJ_G0031709) #34 Renbp (MGP_PahariEiJ_G0031710) #35 Hcfc1 (MGP_PahariEiJ_G0031711) #36 Rat MODERN SPECIES 46 F8a1 (ENSRNOG00000070033) LOC103690322 (ENSRNOG00000055822) LOC100911047 (ENSRNOG00000068104) Xlr3a (ENSRNOG00000064693) LOC100911002 (ENSRNOG00000050177) Pwwp4 (ENSRNOG00000068777) ENSRNOG00000069789 Zfp275 (ENSRNOG00000061073) RGD1559982 (ENSRNOG00000070467) #15 Zfp92 (ENSRNOG00000051836) #16 Trex2 (ENSRNOG00000056983) #17 Haus7 (ENSRNOG00000055648) #18 Bgn (ENSRNOG00000055962) #19 Atp2b3 (ENSRNOG00000061304) #20 AABR07071935.1 (ENSRNOG00000061441) Dusp9 (ENSRNOG00000055185) #22 Pnck (ENSRNOG00000058317) #23 Slc6a8 (ENSRNOG00000057620) #24 Bcap31 (ENSRNOG00000055756) #25 Abcd1 (ENSRNOG00000056524) #26 Plxnb3 (ENSRNOG00000061731) #27 Srpk3 (ENSRNOG00000054548) Idh3g (ENSRNOG00000055572) #28 Ssr4 (ENSRNOG00000053172) #29 Pdzd4 (ENSRNOG00000056174) #30 L1cam (ENSRNOG00000061230) #31 Arhgap4 (ENSRNOG00000058545) #33 Avpr2 (ENSRNOG00000059862) #32 Naa10 (ENSRNOG00000060063) #34 Renbp (ENSRNOG00000054765) #35 Hcfc1 (ENSRNOG00000051948) #36 Upper Galilee mountains blind mole rat MODERN SPECIES 660 Magea10 (ENSNGAG00000018067) #8 Gabra3 (ENSNGAG00000004762) Gabrq (ENSNGAG00000023448) Cetn2 (ENSNGAG00000013931) Nsdhl (ENSNGAG00000013199) Zfp185 (ENSNGAG00000007010) Pnma3 (ENSNGAG00000021577) ##15 Zfp275 (ENSNGAG00000023803) Gm18336 (ENSNGAG00000010715) #15 Zfp92 (ENSNGAG00000014044) #16 Trex2 (ENSNGAG00000022556) #17 Haus7 (ENSNGAG00000004509) #18 Bgn (ENSNGAG00000020236) #19 Atp2b3 (ENSNGAG00000023103) #20 ENSNGAG00000022572 #21 Dusp9 (ENSNGAG00000022463) #22 Pnck (ENSNGAG00000024203) #23 Slc6a8 (ENSNGAG00000012992) #24 Bcap31 (ENSNGAG00000005195) #25 Abcd1 (ENSNGAG00000023420) #26 Plxnb3 (ENSNGAG00000023368) #27 Srpk3 (ENSNGAG00000021121) Idh3g (ENSNGAG00000017889) #28 ENSNGAG00000015787 #29 Pdzd4 (ENSNGAG00000009443) #30 L1cam (ENSNGAG00000013550) #31 Avpr2 (ENSNGAG00000009849) #32 Arhgap4 (ENSNGAG00000015413) #33 Naa10 (ENSNGAG00000020303) #34 Renbp (ENSNGAG00000021686) #35 Hcfc1 (ENSNGAG00000013083) #36 Lesser Egyptian jerboa MODERN SPECIES 224 Pnma5 (ENSJJAG00000022106) ##15 ENSJJAG00000023268 #15 Zfp275 (ENSJJAG00000023544) ENSJJAG00000023776 #15 Zfp92 (ENSJJAG00000024019) #16 Trex2 (ENSJJAG00000012484) #17 Haus7 (ENSJJAG00000011304) #18 Bgn (ENSJJAG00000014050) #19 Atp2b3 (ENSJJAG00000014975) #20 Dusp9 (ENSJJAG00000018570) #22 Pnck (ENSJJAG00000020546) #23 Slc6a8 (ENSJJAG00000022046) #24 Bcap31 (ENSJJAG00000011510) #25 Abcd1 (ENSJJAG00000012430) #26 Plxnb3 (ENSJJAG00000017006) #27 Srpk3 (ENSJJAG00000019785) Idh3g (ENSJJAG00000015962) #28 Ssr4 (ENSJJAG00000017842) #29 Pdzd4 (ENSJJAG00000018534) #30 L1cam (ENSJJAG00000021077) #31 Avpr2 (ENSJJAG00000018314) #32 Arhgap4 (ENSJJAG00000021798) #33 Naa10 (ENSJJAG00000023398) #34 Renbp (ENSJJAG00000010739) #35 Hcfc1 (ENSJJAG00000012815) #36 Kangaroo rat MODERN SPECIES 526 ENSDORG00000029018 #15 Zfp92 (ENSDORG00000001936) #16 Trex2 (ENSDORG00000023727) #17 Haus7 (ENSDORG00000001235) #18 ENSDORG00000001237 #19 Atp2b3 (ENSDORG00000013038) #20 ENSDORG00000012846 #21 Dusp9 (ENSDORG00000024222) #22 Pnck (ENSDORG00000014186) #23 Slc6a8 (ENSDORG00000001174) #24 Bcap31 (ENSDORG00000006022) #25 Abcd1 (ENSDORG00000006023) #26 Plxnb3 (ENSDORG00000006024) #27 Srpk3 (ENSDORG00000006026) Idh3g (ENSDORG00000006029) #28 Ssr4 (ENSDORG00000006030) #29 Pdzd4 (ENSDORG00000028112) #30 L1cam (ENSDORG00000014093) #31 Avpr2 (ENSDORG00000002747) #32 Arhgap4 (ENSDORG00000002750) #33 Naa10 (ENSDORG00000002753) #34 Renbp (ENSDORG00000002755) #35 Hcfc1 (ENSDORG00000002756) #36 Lagomorpha ANCESTRAL SPECIES 103 ENSGT00390000012715.a #17 ENSGT00390000003937 #18 ENSGT00940000155311.C #19 ENSGT00940000160765 #20 ENSGT00940000155445 #21 ENSGT00940000161880 #22 ENSGT00940000162187 #23 ENSGT00940000155869.v #24 ENSGT00390000011863.c #25 ENSGT01020000230394.e.a.a.b.a.b #27 ENSGT00940000157877.b ENSGT00950000182989.D.a.a.g.a #28 ENSGT00390000008992 #29 ENSGT00950000183062.a.b #30 ENSGT00940000157506 #31 ENSGT01050000244882.b.c.b #32 ENSGT00950000182824.a.b.b #33 ENSGT00550000074803 #34 ENSGT00390000013740 #35 ENSGT00940000161383 #36 ENSGT00390000011272 Rabbit MODERN SPECIES 549 TREX2 (ENSOCUG00000025054) #17 ENSOCUG00000002376 #18 BGN (ENSOCUG00000023931) #19 ATP2B3 (ENSOCUG00000029623) #20 CCNQ (ENSOCUG00000002393) #21 DUSP9 (ENSOCUG00000021158) #22 PNCK (ENSOCUG00000002399) #23 BCAP31 (ENSOCUG00000017921) #25 PLXNB3 (ENSOCUG00000016506) #27 ABCD1 (ENSOCUG00000017922) #26 IDH3G (ENSOCUG00000016554) #28 SSR4 (ENSOCUG00000027360) #29 ENSOCUG00000026260 #24 PDZD4 (ENSOCUG00000017200) #30 L1CAM (ENSOCUG00000001102) #31 AVPR2 (ENSOCUG00000015695) #32 ARHGAP4 (ENSOCUG00000001107) #33 NAA10 (ENSOCUG00000001111) #34 RENBP (ENSOCUG00000025840) #35 HCFC1 (ENSOCUG00000001113) #36 TMEM187 (ENSOCUG00000001116) Pika MODERN SPECIES 8486 DUSP9 (ENSOPRG00000012013) #22