Mus	ANCESTRAL SPECIES	9	ENSGT00940000159444	ENSGT00940000162167	ENSGT00940000155935	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b	ENSGT01030000234522.C.b.e.a.a.a.a.b	ENSGT00390000000062.x.b.k.a	ENSGT00950000182890.D.c.b.a.a.a	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00940000162887	ENSGT00390000012715.a	ENSGT00390000003937	ENSGT00940000155311.C	ENSGT00940000160765	ENSGT00940000161880 #22	ENSGT00940000162187	ENSGT00940000155869.v	ENSGT00390000011863.c	ENSGT00950000182955.a.b.a	ENSGT01020000230394.e.a.a.b.a.b	ENSGT00940000157877.b	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b	ENSGT00940000157506	ENSGT01050000244882.b.c.b	ENSGT00950000182824.a.b.b	ENSGT00550000074803	ENSGT00390000013740	ENSGT00940000161383
Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000159444	ENSGT00940000162167	ENSGT00940000155935	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b	ENSGT01030000234522.C.b.e.a.a.a.a.b	ENSGT00390000000062.x.b.k.a	ENSGT00950000182890.D.c.b.a.a.a	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00940000162887	ENSGT00390000012715.a	ENSGT00390000003937	ENSGT00940000155311.C	ENSGT00940000160765	ENSGT00940000161880 #22	ENSGT00940000162187	ENSGT00940000155869.v	ENSGT00390000011863.c	ENSGT00950000182955.a.b.a	ENSGT01020000230394.e.a.a.b.a.b	ENSGT00940000157877.b	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b	ENSGT00940000157506	ENSGT01050000244882.b.c.b	ENSGT00950000182824.a.b.b	ENSGT00550000074803	ENSGT00390000013740	ENSGT00940000161383
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000159444	ENSGT00940000162167	ENSGT00940000155935	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b	ENSGT01030000234522.C.b.e.a.a.a.a.b	ENSGT00390000000062.x.b.k.a	ENSGT00950000182890.D.c.b.a.a.a	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00940000162887	ENSGT00390000012715.a	ENSGT00390000003937	ENSGT00940000155311.C	ENSGT00940000160765	ENSGT00940000161880 #22	ENSGT00940000162187	ENSGT00940000155869.v	ENSGT00390000011863.c	ENSGT00950000182955.a.b.a	ENSGT01020000230394.e.a.a.b.a.b	ENSGT00940000157877.b	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b	ENSGT00940000157506	ENSGT01050000244882.b.c.b	ENSGT00950000182824.a.b.b	ENSGT00550000074803	ENSGT00390000013740	ENSGT00940000161383
Mus_C	ANCESTRAL SPECIES	27	ENSGT00940000154972.eb.a	ENSGT00940000159444	ENSGT00940000162167	ENSGT00940000155935	ENSGT00940000158229	ENSGT00530000063872.A	ENSGT01030000234522.C.b.e.a.a.a.b	ENSGT01030000234522.C.b.e.a.a.a.a.b	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00950000182890.D.c.b.a.a.a	ENSGT00940000162887	ENSGT00390000012715.a	ENSGT00390000003937	ENSGT00940000155311.C	ENSGT00940000160765	ENSGT00940000161880 #22	ENSGT00940000162187	ENSGT00940000155869.v	ENSGT00390000011863.c	ENSGT00950000182955.a.b.a	ENSGT01020000230394.e.a.a.b.a.b	ENSGT00940000157877.b	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b	ENSGT00940000157506	ENSGT01050000244882.b.c.b	ENSGT00950000182824.a.b.b	ENSGT00550000074803	ENSGT00390000013740	ENSGT00940000161383
Steppe mouse	MODERN SPECIES	886																Dusp9 (ENSMSIG00000007104) #22
spretus	MODERN SPECIES	19	Magea10 (MGP_SPRETEiJ_G0034293)	Gabra3 (MGP_SPRETEiJ_G0034294)	Gabrq (MGP_SPRETEiJ_G0034295)	Cetn2 (MGP_SPRETEiJ_G0034296)	Nsdhl (MGP_SPRETEiJ_G0034297)	Zfp185 (MGP_SPRETEiJ_G0034298)	Pnma5 (MGP_SPRETEiJ_G0034299)	Pnma3 (MGP_SPRETEiJ_G0034300)	F8a (MGP_SPRETEiJ_G0034301)	Zfp275 (MGP_SPRETEiJ_G0034302)	Zfp92 (MGP_SPRETEiJ_G0034303)	Trex2 (MGP_SPRETEiJ_G0034304)	Haus7 (MGP_SPRETEiJ_G0034305)	Bgn (MGP_SPRETEiJ_G0034306)	Atp2b3 (MGP_SPRETEiJ_G0034307)	Dusp9 (MGP_SPRETEiJ_G0034308) #22	Pnck (MGP_SPRETEiJ_G0034309)	Slc6a8 (MGP_SPRETEiJ_G0034310)	Bcap31 (MGP_SPRETEiJ_G0034311)	Abcd1 (MGP_SPRETEiJ_G0034312)	Plxnb3 (MGP_SPRETEiJ_G0034313)	Srpk3 (MGP_SPRETEiJ_G0034314)	Idh3g (MGP_SPRETEiJ_G0034315)	Ssr4 (MGP_SPRETEiJ_G0034316)	Pdzd4 (MGP_SPRETEiJ_G0034317)	L1cam (MGP_SPRETEiJ_G0034318)	Arhgap4 (MGP_SPRETEiJ_G0034319)	Avpr2 (MGP_SPRETEiJ_G0034320)	Naa10 (MGP_SPRETEiJ_G0034321)	Renbp (MGP_SPRETEiJ_G0034322)	Hcfc1 (MGP_SPRETEiJ_G0034323)
Mouse	MODERN SPECIES	37	Spin2d (ENSMUSG00000079566)	Xlr3b (ENSMUSG00000073125)	Xlr4b (ENSMUSG00000067768)	F8a (ENSMUSG00000078317)	Xlr4c (ENSMUSG00000031362)	Xlr3c (ENSMUSG00000058147)	Xlr5c (ENSMUSG00000067764)	Gm45015 (ENSMUSG00000109368)	Zfp275 (ENSMUSG00000031365)	Gm18336 (ENSMUSG00000096966)	Zfp92 (ENSMUSG00000031374)	Trex2 (ENSMUSG00000031372)	Haus7 (ENSMUSG00000031371)	Bgn (ENSMUSG00000031375)	Atp2b3 (ENSMUSG00000031376)	Dusp9 (ENSMUSG00000031383) #22	Pnck (ENSMUSG00000002012)	Slc6a8 (ENSMUSG00000019558)	Bcap31 (ENSMUSG00000002015)	Abcd1 (ENSMUSG00000031378)	Plxnb3 (ENSMUSG00000031385)	Srpk3 (ENSMUSG00000002007)	Idh3g (ENSMUSG00000002010)	Ssr4 (ENSMUSG00000002014)	Pdzd4 (ENSMUSG00000002006)	L1cam (ENSMUSG00000031391)	Arhgap4 (ENSMUSG00000031389)	Avpr2 (ENSMUSG00000031390)	Naa10 (ENSMUSG00000031388)	Renbp (ENSMUSG00000031387)	Hcfc1 (ENSMUSG00000031386)
Ryukyu mouse	MODERN SPECIES	19	Magea4 (MGP_CAROLIEiJ_G0033138)	Gabre (MGP_CAROLIEiJ_G0033139)	Magea10 (MGP_CAROLIEiJ_G0033140)	Gabra3 (MGP_CAROLIEiJ_G0033141)	Gabrq (MGP_CAROLIEiJ_G0033142)	Cetn2 (MGP_CAROLIEiJ_G0033143)	Nsdhl (MGP_CAROLIEiJ_G0033144)	Zfp185 (MGP_CAROLIEiJ_G0033145)	Pnma5 (MGP_CAROLIEiJ_G0033146)	Zfp275 (MGP_CAROLIEiJ_G0033147)	Zfp92 (MGP_CAROLIEiJ_G0033148)	Trex2 (MGP_CAROLIEiJ_G0033149)	Haus7 (MGP_CAROLIEiJ_G0033150)	Bgn (MGP_CAROLIEiJ_G0033151)	Atp2b3 (MGP_CAROLIEiJ_G0033152)	Dusp9 (MGP_CAROLIEiJ_G0033153) #22	Pnck (MGP_CAROLIEiJ_G0033154)	Slc6a8 (MGP_CAROLIEiJ_G0033155)	Bcap31 (MGP_CAROLIEiJ_G0033156)	Abcd1 (MGP_CAROLIEiJ_G0033157)	Plxnb3 (MGP_CAROLIEiJ_G0033158)	Srpk3 (MGP_CAROLIEiJ_G0033159)	Idh3g (MGP_CAROLIEiJ_G0033160)	Ssr4 (MGP_CAROLIEiJ_G0033161)	Pdzd4 (MGP_CAROLIEiJ_G0033162)	L1cam (MGP_CAROLIEiJ_G0033163)	Arhgap4 (MGP_CAROLIEiJ_G0033164)	Avpr2 (MGP_CAROLIEiJ_G0033165)	Naa10 (MGP_CAROLIEiJ_G0033166)	Renbp (MGP_CAROLIEiJ_G0033167)	Hcfc1 (MGP_CAROLIEiJ_G0033168)
Shrew mouse	MODERN SPECIES	23	Magea10 (MGP_PahariEiJ_G0031681)	Gabra3 (MGP_PahariEiJ_G0031682)	Gabrq (MGP_PahariEiJ_G0031683)	Cetn2 (MGP_PahariEiJ_G0031684)	Nsdhl (MGP_PahariEiJ_G0031685)	Zfp185 (MGP_PahariEiJ_G0031686)	MGP_PahariEiJ_G0031687	MGP_PahariEiJ_G0031688	MGP_PahariEiJ_G0031689	Zfp275 (MGP_PahariEiJ_G0031690)	MGP_PahariEiJ_G0031691	Trex2 (MGP_PahariEiJ_G0031692)	Haus7 (MGP_PahariEiJ_G0031693)	Bgn (MGP_PahariEiJ_G0031694)	Atp2b3 (MGP_PahariEiJ_G0031695)	Dusp9 (MGP_PahariEiJ_G0031696) #22	Pnck (MGP_PahariEiJ_G0031697)	Slc6a8 (MGP_PahariEiJ_G0031698)	Bcap31 (MGP_PahariEiJ_G0031699)	Abcd1 (MGP_PahariEiJ_G0031700)	Plxnb3 (MGP_PahariEiJ_G0031701)	Srpk3 (MGP_PahariEiJ_G0031702)	Idh3g (MGP_PahariEiJ_G0031703)	Ssr4 (MGP_PahariEiJ_G0031704)	Pdzd4 (MGP_PahariEiJ_G0031705)	L1cam (MGP_PahariEiJ_G0031706)	Arhgap4 (MGP_PahariEiJ_G0031707)	Avpr2 (MGP_PahariEiJ_G0031708)	Naa10 (MGP_PahariEiJ_G0031709)	Renbp (MGP_PahariEiJ_G0031710)	Hcfc1 (MGP_PahariEiJ_G0031711)