Glires	ANCESTRAL SPECIES	10	ENSGT00940000155935 #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT01030000234522.C.b.e.a.a.a.b #13	ENSGT01030000234522.C.b.e.a.a.a.a.b #14	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##14	ENSGT00950000182890.D.c.b.a.a.a #16	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000154488.B	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000155445	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Rodentia	ANCESTRAL SPECIES	10	ENSGT00940000155935 #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT01030000234522.C.b.e.a.a.a.b #13	ENSGT01030000234522.C.b.e.a.a.a.a.b #14	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##14	ENSGT00950000182890.D.c.b.a.a.a #16	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000154488.B	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000155445	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00940000159444 #8	ENSGT00940000162167 #9	ENSGT00940000155935 #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT01030000234522.C.b.e.a.a.a.b #13	ENSGT01030000234522.C.b.e.a.a.a.a.b #14	ENSGT00950000182890.D.c.b.a.a.a #16	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000155445	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00940000154972 #7	ENSGT00940000159444 #8	ENSGT00940000162167 #9	ENSGT00940000155935 #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT01030000234522.C.b.e.a.a.a.b #13	ENSGT01030000234522.C.b.e.a.a.a.a.b #14	ENSGT00950000182890.D.c.b.a.a.a #16	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Muroidea	ANCESTRAL SPECIES	13	ENSGT00940000154972.eb.a #7	ENSGT00940000159444 #8	ENSGT00940000162167 #9	ENSGT00940000155935 #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT01030000234522.C.b.e.a.a.a.b #13	ENSGT01030000234522.C.b.e.a.a.a.a.b #14	ENSGT00950000182890.D.c.b.a.a.a #16	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00940000154972.eb.a #7	ENSGT00940000159444 #8	ENSGT00940000162167 #9	ENSGT00940000155935 #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT01030000234522.C.b.e.a.a.a.b #13	ENSGT01030000234522.C.b.e.a.a.a.a.b #14	ENSGT00950000182890.D.c.b.a.a.a #16	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Murinae	ANCESTRAL SPECIES	14	ENSGT00940000159444 #8	ENSGT00940000162167 #9	ENSGT00940000155935 #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT01030000234522.C.b.e.a.a.a.b #13	ENSGT01030000234522.C.b.e.a.a.a.a.b #14	ENSGT00390000000062.x.b.k.a	ENSGT00950000182890.D.c.b.a.a.a #16	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Mus	ANCESTRAL SPECIES	9	ENSGT00940000159444 #8	ENSGT00940000162167 #9	ENSGT00940000155935 #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT01030000234522.C.b.e.a.a.a.b #13	ENSGT01030000234522.C.b.e.a.a.a.a.b #14	ENSGT00390000000062.x.b.k.a	ENSGT00950000182890.D.c.b.a.a.a #16	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000159444 #8	ENSGT00940000162167 #9	ENSGT00940000155935 #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT01030000234522.C.b.e.a.a.a.b #13	ENSGT01030000234522.C.b.e.a.a.a.a.b #14	ENSGT00390000000062.x.b.k.a	ENSGT00950000182890.D.c.b.a.a.a #16	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000159444 #8	ENSGT00940000162167 #9	ENSGT00940000155935 #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT01030000234522.C.b.e.a.a.a.b #13	ENSGT01030000234522.C.b.e.a.a.a.a.b #14	ENSGT00390000000062.x.b.k.a	ENSGT00950000182890.D.c.b.a.a.a #16	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Mus_C	ANCESTRAL SPECIES	27	ENSGT00940000154972.eb.a #7	ENSGT00940000159444 #8	ENSGT00940000162167 #9	ENSGT00940000155935 #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT01030000234522.C.b.e.a.a.a.b #13	ENSGT01030000234522.C.b.e.a.a.a.a.b #14	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00950000182890.D.c.b.a.a.a #16	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
spretus	MODERN SPECIES	19	Magea10 (MGP_SPRETEiJ_G0034293) #7	Gabra3 (MGP_SPRETEiJ_G0034294) #8	Gabrq (MGP_SPRETEiJ_G0034295) #9	Cetn2 (MGP_SPRETEiJ_G0034296) #10	Nsdhl (MGP_SPRETEiJ_G0034297) #11	Zfp185 (MGP_SPRETEiJ_G0034298) #12	Pnma5 (MGP_SPRETEiJ_G0034299) #13	Pnma3 (MGP_SPRETEiJ_G0034300) #14	F8a (MGP_SPRETEiJ_G0034301) #15	Zfp275 (MGP_SPRETEiJ_G0034302) #16	Zfp92 (MGP_SPRETEiJ_G0034303) #17	Trex2 (MGP_SPRETEiJ_G0034304) #18	Haus7 (MGP_SPRETEiJ_G0034305) #19	Bgn (MGP_SPRETEiJ_G0034306) #20	Atp2b3 (MGP_SPRETEiJ_G0034307) #21	Dusp9 (MGP_SPRETEiJ_G0034308) #22	Pnck (MGP_SPRETEiJ_G0034309) #23	Slc6a8 (MGP_SPRETEiJ_G0034310) #24	Bcap31 (MGP_SPRETEiJ_G0034311) #25	Abcd1 (MGP_SPRETEiJ_G0034312) #26	Plxnb3 (MGP_SPRETEiJ_G0034313) #27	Srpk3 (MGP_SPRETEiJ_G0034314) #28	Idh3g (MGP_SPRETEiJ_G0034315) #29	Ssr4 (MGP_SPRETEiJ_G0034316) #30	Pdzd4 (MGP_SPRETEiJ_G0034317) #31	L1cam (MGP_SPRETEiJ_G0034318) #32	Arhgap4 (MGP_SPRETEiJ_G0034319) #33	Avpr2 (MGP_SPRETEiJ_G0034320) #34	Naa10 (MGP_SPRETEiJ_G0034321) #35	Renbp (MGP_SPRETEiJ_G0034322) #36	Hcfc1 (MGP_SPRETEiJ_G0034323) #37
Steppe mouse	MODERN SPECIES	886																Dusp9 (ENSMSIG00000007104) #22
Mouse	MODERN SPECIES	37	Spin2d (ENSMUSG00000079566)	Xlr3b (ENSMUSG00000073125)	Xlr4b (ENSMUSG00000067768)	F8a (ENSMUSG00000078317) #15	Xlr4c (ENSMUSG00000031362)	Xlr3c (ENSMUSG00000058147)	Xlr5c (ENSMUSG00000067764)	Gm45015 (ENSMUSG00000109368) ##14	Zfp275 (ENSMUSG00000031365) #16	Gm18336 (ENSMUSG00000096966) ##14	Zfp92 (ENSMUSG00000031374) #17	Trex2 (ENSMUSG00000031372) #18	Haus7 (ENSMUSG00000031371) #19	Bgn (ENSMUSG00000031375) #20	Atp2b3 (ENSMUSG00000031376) #21	Dusp9 (ENSMUSG00000031383) #22	Pnck (ENSMUSG00000002012) #23	Slc6a8 (ENSMUSG00000019558) #24	Bcap31 (ENSMUSG00000002015) #25	Abcd1 (ENSMUSG00000031378) #26	Plxnb3 (ENSMUSG00000031385) #27	Srpk3 (ENSMUSG00000002007) #28	Idh3g (ENSMUSG00000002010) #29	Ssr4 (ENSMUSG00000002014) #30	Pdzd4 (ENSMUSG00000002006) #31	L1cam (ENSMUSG00000031391) #32	Arhgap4 (ENSMUSG00000031389) #33	Avpr2 (ENSMUSG00000031390) #34	Naa10 (ENSMUSG00000031388) #35	Renbp (ENSMUSG00000031387) #36	Hcfc1 (ENSMUSG00000031386) #37
Ryukyu mouse	MODERN SPECIES	19	Magea4 (MGP_CAROLIEiJ_G0033138) ##7	Gabre (MGP_CAROLIEiJ_G0033139)	Magea10 (MGP_CAROLIEiJ_G0033140) #7	Gabra3 (MGP_CAROLIEiJ_G0033141) #8	Gabrq (MGP_CAROLIEiJ_G0033142) #9	Cetn2 (MGP_CAROLIEiJ_G0033143) #10	Nsdhl (MGP_CAROLIEiJ_G0033144) #11	Zfp185 (MGP_CAROLIEiJ_G0033145) #12	Pnma5 (MGP_CAROLIEiJ_G0033146) #13	Zfp275 (MGP_CAROLIEiJ_G0033147) #16	Zfp92 (MGP_CAROLIEiJ_G0033148) #17	Trex2 (MGP_CAROLIEiJ_G0033149) #18	Haus7 (MGP_CAROLIEiJ_G0033150) #19	Bgn (MGP_CAROLIEiJ_G0033151) #20	Atp2b3 (MGP_CAROLIEiJ_G0033152) #21	Dusp9 (MGP_CAROLIEiJ_G0033153) #22	Pnck (MGP_CAROLIEiJ_G0033154) #23	Slc6a8 (MGP_CAROLIEiJ_G0033155) #24	Bcap31 (MGP_CAROLIEiJ_G0033156) #25	Abcd1 (MGP_CAROLIEiJ_G0033157) #26	Plxnb3 (MGP_CAROLIEiJ_G0033158) #27	Srpk3 (MGP_CAROLIEiJ_G0033159) #28	Idh3g (MGP_CAROLIEiJ_G0033160) #29	Ssr4 (MGP_CAROLIEiJ_G0033161) #30	Pdzd4 (MGP_CAROLIEiJ_G0033162) #31	L1cam (MGP_CAROLIEiJ_G0033163) #32	Arhgap4 (MGP_CAROLIEiJ_G0033164) #33	Avpr2 (MGP_CAROLIEiJ_G0033165) #34	Naa10 (MGP_CAROLIEiJ_G0033166) #35	Renbp (MGP_CAROLIEiJ_G0033167) #36	Hcfc1 (MGP_CAROLIEiJ_G0033168) #37
Shrew mouse	MODERN SPECIES	23	Magea10 (MGP_PahariEiJ_G0031681) #7	Gabra3 (MGP_PahariEiJ_G0031682) #8	Gabrq (MGP_PahariEiJ_G0031683) #9	Cetn2 (MGP_PahariEiJ_G0031684) #10	Nsdhl (MGP_PahariEiJ_G0031685) #11	Zfp185 (MGP_PahariEiJ_G0031686) #12	MGP_PahariEiJ_G0031687	MGP_PahariEiJ_G0031688	MGP_PahariEiJ_G0031689	Zfp275 (MGP_PahariEiJ_G0031690) #16	MGP_PahariEiJ_G0031691 #17	Trex2 (MGP_PahariEiJ_G0031692) #18	Haus7 (MGP_PahariEiJ_G0031693) #19	Bgn (MGP_PahariEiJ_G0031694) #20	Atp2b3 (MGP_PahariEiJ_G0031695) #21	Dusp9 (MGP_PahariEiJ_G0031696) #22	Pnck (MGP_PahariEiJ_G0031697) #23	Slc6a8 (MGP_PahariEiJ_G0031698) #24	Bcap31 (MGP_PahariEiJ_G0031699) #25	Abcd1 (MGP_PahariEiJ_G0031700) #26	Plxnb3 (MGP_PahariEiJ_G0031701) #27	Srpk3 (MGP_PahariEiJ_G0031702) #28	Idh3g (MGP_PahariEiJ_G0031703) #29	Ssr4 (MGP_PahariEiJ_G0031704) #30	Pdzd4 (MGP_PahariEiJ_G0031705) #31	L1cam (MGP_PahariEiJ_G0031706) #32	Arhgap4 (MGP_PahariEiJ_G0031707) #33	Avpr2 (MGP_PahariEiJ_G0031708) #34	Naa10 (MGP_PahariEiJ_G0031709) #35	Renbp (MGP_PahariEiJ_G0031710) #36	Hcfc1 (MGP_PahariEiJ_G0031711) #37
Rat	MODERN SPECIES	46	F8a1 (ENSRNOG00000070033) #15	LOC103690322 (ENSRNOG00000055822)	LOC100911047 (ENSRNOG00000068104)	Xlr3a (ENSRNOG00000064693)	LOC100911002 (ENSRNOG00000050177)	Pwwp4 (ENSRNOG00000068777)	ENSRNOG00000069789	Zfp275 (ENSRNOG00000061073) #16	RGD1559982 (ENSRNOG00000070467) ##14	Zfp92 (ENSRNOG00000051836) #17	Trex2 (ENSRNOG00000056983) #18	Haus7 (ENSRNOG00000055648) #19	Bgn (ENSRNOG00000055962) #20	Atp2b3 (ENSRNOG00000061304) #21	AABR07071935.1 (ENSRNOG00000061441)	Dusp9 (ENSRNOG00000055185) #22	Pnck (ENSRNOG00000058317) #23	Slc6a8 (ENSRNOG00000057620) #24	Bcap31 (ENSRNOG00000055756) #25	Abcd1 (ENSRNOG00000056524) #26	Plxnb3 (ENSRNOG00000061731) #27	Srpk3 (ENSRNOG00000054548) #28	Idh3g (ENSRNOG00000055572) #29	Ssr4 (ENSRNOG00000053172) #30	Pdzd4 (ENSRNOG00000056174) #31	L1cam (ENSRNOG00000061230) #32	Arhgap4 (ENSRNOG00000058545) #33	Avpr2 (ENSRNOG00000059862) #34	Naa10 (ENSRNOG00000060063) #35	Renbp (ENSRNOG00000054765) #36	Hcfc1 (ENSRNOG00000051948) #37
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00390000006832	ENSGT00940000155374	ENSGT00940000161201	ENSGT00940000154972.eb.a #7	ENSGT00940000159444 #8	ENSGT00940000162167 #9	ENSGT00940000155935 #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT01030000234522.C.b.e.a.a.a.a.b #14	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Cricetinae	ANCESTRAL SPECIES	46						ENSGT00390000000062.x.b.k.b	ENSGT00390000016992 #15	ENSGT00940000163020	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00940000161383 #37	ENSGT00940000160502
Golden Hamster	MODERN SPECIES	857									ENSMAUG00000019268	Gm18336 (ENSMAUG00000017654) ##14	Zfp92 (ENSMAUG00000006204) #17	Trex2 (ENSMAUG00000006617) #18	Haus7 (ENSMAUG00000020073) #19	Bgn (ENSMAUG00000020050) #20	Atp2b3 (ENSMAUG00000009992) #21	Dusp9 (ENSMAUG00000020993) #22	Pnck (ENSMAUG00000017486) #23	Slc6a8 (ENSMAUG00000017007) #24	Bcap31 (ENSMAUG00000009135) #25	Abcd1 (ENSMAUG00000020103) #26	Plxnb3 (ENSMAUG00000005458) #27	Srpk3 (ENSMAUG00000009935) #28	Idh3g (ENSMAUG00000000657) #29	ENSMAUG00000015090 #30	Pdzd4 (ENSMAUG00000000466) #31	L1cam (ENSMAUG00000008575) #32	Avpr2 (ENSMAUG00000001098) #34	Arhgap4 (ENSMAUG00000020011) #33	Naa10 (ENSMAUG00000019021) #35	Hcfc1 (ENSMAUG00000018495) #37	Irak1 (ENSMAUG00000002430)
Chinese hamster chok1gshd	MODERN SPECIES	16	Nsdhl (ENSCGRG00001015462) #11	Zfp185 (ENSCGRG00001021834) #12	ENSCGRG00001024731	ENSCGRG00001005230	ENSCGRG00001023020	F8a (ENSCGRG00001010823) #15	ENSCGRG00001011071	Gm45015 (ENSCGRG00001000704) ##14	ENSCGRG00001020684	Gm18336 (ENSCGRG00001009753) ##14	Zfp92 (ENSCGRG00001024615) #17	Trex2 (ENSCGRG00001012110) #18	Haus7 (ENSCGRG00001014259) #19	Bgn (ENSCGRG00001004273) #20	Atp2b3 (ENSCGRG00001013946) #21	Dusp9 (ENSCGRG00001015656) #22	Pnck (ENSCGRG00001015654) #23	Slc6a8 (ENSCGRG00001013941) #24	ENSCGRG00001022627 #25	Abcd1 (ENSCGRG00001017773) #26	Plxnb3 (ENSCGRG00001024658) #27	Srpk3 (ENSCGRG00001005920) #28	Idh3g (ENSCGRG00001012756) #29	Ssr4 (ENSCGRG00001019369) #30	Pdzd4 (ENSCGRG00001012732) #31	L1cam (ENSCGRG00001020541) #32	Avpr2 (ENSCGRG00001010799) #34	Arhgap4 (ENSCGRG00001023232) #33	Naa10 (ENSCGRG00001012595) #35	Hcfc1 (ENSCGRG00001019535) #37	Irak1 (ENSCGRG00001013928)
Cricetidae_B	ANCESTRAL SPECIES	28	ENSGT00940000161201	ENSGT00940000154972.eb.a #7	ENSGT00940000159444 #8	ENSGT00940000162167 #9	ENSGT00940000155935 #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT01030000234522.C.b.e.a.a.a.a.b #14	ENSGT00950000182890.D.c.b.a.a.a #16	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v.i #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Prairie vole	MODERN SPECIES	212									ENSMOCG00000008885	Gm18336 (ENSMOCG00000000683) ##14	Zfp92 (ENSMOCG00000015417) #17	Trex2 (ENSMOCG00000001305) #18	ENSMOCG00000016829 #19	Bgn (ENSMOCG00000005439) #20	Atp2b3 (ENSMOCG00000016837) #21	Dusp9 (ENSMOCG00000014149) #22	Pnck (ENSMOCG00000005305) #23	Slc6a8 (ENSMOCG00000013922) #24	Bcap31 (ENSMOCG00000011355) #25	Abcd1 (ENSMOCG00000020381) #26	Plxnb3 (ENSMOCG00000016754) #27	Srpk3 (ENSMOCG00000000270) #28	Idh3g (ENSMOCG00000013265) #29	Ssr4 (ENSMOCG00000000481) #30	Pdzd4 (ENSMOCG00000013342) #31	L1cam (ENSMOCG00000018901) #32	Avpr2 (ENSMOCG00000012257) #34	Arhgap4 (ENSMOCG00000010795) #33	Naa10 (ENSMOCG00000011968) #35	Renbp (ENSMOCG00000021137) #36	Hcfc1 (ENSMOCG00000018390) #37
Northern American deer mouse	MODERN SPECIES	475	Gabrq (ENSPEMG00000024127) #9	Cetn2 (ENSPEMG00000009693) #10	Nsdhl (ENSPEMG00000028251) #11	ENSPEMG00000016866	Zfp185 (ENSPEMG00000001172) #12	Pnma5 (ENSPEMG00000029060) #13	ENSPEMG00000029415 ##14	ENSPEMG00000014112 ##14	Zfp275 (ENSPEMG00000028598) #16	ENSPEMG00000002119 ##14	Zfp92 (ENSPEMG00000029357) #17	Trex2 (ENSPEMG00000004918) #18	Haus7 (ENSPEMG00000011467) #19	Bgn (ENSPEMG00000017164) #20	Atp2b3 (ENSPEMG00000001607) #21	Dusp9 (ENSPEMG00000009249) #22	Pnck (ENSPEMG00000018929) #23	ENSPEMG00000001387 #24	Bcap31 (ENSPEMG00000018100) #25	Abcd1 (ENSPEMG00000010748) #26	Plxnb3 (ENSPEMG00000019022) #27	Srpk3 (ENSPEMG00000012149) #28	Idh3g (ENSPEMG00000011232) #29	Ssr4 (ENSPEMG00000008760) #30	Pdzd4 (ENSPEMG00000008494) #31	L1cam (ENSPEMG00000011592) #32	Avpr2 (ENSPEMG00000008325) #34	Arhgap4 (ENSPEMG00000019112) #33	ENSPEMG00000010870 #36	Hcfc1 (ENSPEMG00000011837) #37	Irak1 (ENSPEMG00000001469)
Upper Galilee mountains blind mole rat	MODERN SPECIES	660	Magea10 (ENSNGAG00000018067) #7	Gabra3 (ENSNGAG00000004762) #8	Gabrq (ENSNGAG00000023448) #9	Cetn2 (ENSNGAG00000013931) #10	Nsdhl (ENSNGAG00000013199) #11	Zfp185 (ENSNGAG00000007010) #12	Pnma3 (ENSNGAG00000021577) #14	Zfp275 (ENSNGAG00000023803) #16	Gm18336 (ENSNGAG00000010715) ##14	Zfp92 (ENSNGAG00000014044) #17	Trex2 (ENSNGAG00000022556) #18	Haus7 (ENSNGAG00000004509) #19	Bgn (ENSNGAG00000020236) #20	Atp2b3 (ENSNGAG00000023103) #21	ENSNGAG00000022572	Dusp9 (ENSNGAG00000022463) #22	Pnck (ENSNGAG00000024203) #23	Slc6a8 (ENSNGAG00000012992) #24	Bcap31 (ENSNGAG00000005195) #25	Abcd1 (ENSNGAG00000023420) #26	Plxnb3 (ENSNGAG00000023368) #27	Srpk3 (ENSNGAG00000021121) #28	Idh3g (ENSNGAG00000017889) #29	ENSNGAG00000015787 #30	Pdzd4 (ENSNGAG00000009443) #31	L1cam (ENSNGAG00000013550) #32	Avpr2 (ENSNGAG00000009849) #34	Arhgap4 (ENSNGAG00000015413) #33	Naa10 (ENSNGAG00000020303) #35	Renbp (ENSNGAG00000021686) #36	Hcfc1 (ENSNGAG00000013083) #37
Lesser Egyptian jerboa	MODERN SPECIES	224							Pnma5 (ENSJJAG00000022106) #13	ENSJJAG00000023268 ##14	Zfp275 (ENSJJAG00000023544) #16	ENSJJAG00000023776 ##14	Zfp92 (ENSJJAG00000024019) #17	Trex2 (ENSJJAG00000012484) #18	Haus7 (ENSJJAG00000011304) #19	Bgn (ENSJJAG00000014050) #20	Atp2b3 (ENSJJAG00000014975) #21	Dusp9 (ENSJJAG00000018570) #22	Pnck (ENSJJAG00000020546) #23	Slc6a8 (ENSJJAG00000022046) #24	Bcap31 (ENSJJAG00000011510) #25	Abcd1 (ENSJJAG00000012430) #26	Plxnb3 (ENSJJAG00000017006) #27	Srpk3 (ENSJJAG00000019785) #28	Idh3g (ENSJJAG00000015962) #29	Ssr4 (ENSJJAG00000017842) #30	Pdzd4 (ENSJJAG00000018534) #31	L1cam (ENSJJAG00000021077) #32	Avpr2 (ENSJJAG00000018314) #34	Arhgap4 (ENSJJAG00000021798) #33	Naa10 (ENSJJAG00000023398) #35	Renbp (ENSJJAG00000010739) #36	Hcfc1 (ENSJJAG00000012815) #37
Kangaroo rat	MODERN SPECIES	526									ENSDORG00000029018 ##14	Zfp92 (ENSDORG00000001936) #17	Trex2 (ENSDORG00000023727) #18	Haus7 (ENSDORG00000001235) #19	ENSDORG00000001237 #20	Atp2b3 (ENSDORG00000013038) #21	ENSDORG00000012846	Dusp9 (ENSDORG00000024222) #22	Pnck (ENSDORG00000014186) #23	Slc6a8 (ENSDORG00000001174) #24	Bcap31 (ENSDORG00000006022) #25	Abcd1 (ENSDORG00000006023) #26	Plxnb3 (ENSDORG00000006024) #27	Srpk3 (ENSDORG00000006026) #28	Idh3g (ENSDORG00000006029) #29	Ssr4 (ENSDORG00000006030) #30	Pdzd4 (ENSDORG00000028112) #31	L1cam (ENSDORG00000014093) #32	Avpr2 (ENSDORG00000002747) #34	Arhgap4 (ENSDORG00000002750) #33	Naa10 (ENSDORG00000002753) #35	Renbp (ENSDORG00000002755) #36	Hcfc1 (ENSDORG00000002756) #37
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000159444 #8	ENSGT00940000162167 #9	ENSGT00940000155935 #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT01030000234522.C.b.e.a.a.a.b #13	ENSGT01030000234522.C.b.e.a.a.a.a.b #14	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##14	ENSGT00940000154488.B	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000155445	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Hystricomorpha	ANCESTRAL SPECIES	54	ENSGT00940000155374	ENSGT00940000161201	ENSGT00940000159444 #8	ENSGT00940000162167 #9	ENSGT00940000155935.eb.a #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000155445	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Hystricomorpha_a	ANCESTRAL SPECIES	61	ENSGT00940000161201	ENSGT00940000154972 #7	ENSGT00940000159444 #8	ENSGT00940000162167 #9	ENSGT00940000155935.eb.a #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT00940000154488.B	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000155445	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Hystricomorpha_b	ANCESTRAL SPECIES	84	ENSGT00940000155374	ENSGT00940000161201	ENSGT00940000154972 #7	ENSGT00940000159444 #8	ENSGT00940000162167 #9	ENSGT00940000155935.eb.a #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT00940000154488.B	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000155445	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Degu	MODERN SPECIES	259		ENSODEG00000002731	ENSODEG00000002721	CCSER1 (ENSODEG00000002701)	ENSODEG00000003691	GABRQ (ENSODEG00000003646) #9	ENSODEG00000003612 #10	NSDHL (ENSODEG00000003563) #11	ENSODEG00000003535	ZFP92 (ENSODEG00000003508) #17	TREX2 (ENSODEG00000019142) #18	HAUS7 (ENSODEG00000003475) #19	BGN (ENSODEG00000003451) #20	ATP2B3 (ENSODEG00000003358) #21	CCNQ (ENSODEG00000003285)	DUSP9 (ENSODEG00000003261) #22	PNCK (ENSODEG00000003252) #23	ENSODEG00000003207 #24	BCAP31 (ENSODEG00000003174) #25	ABCD1 (ENSODEG00000003127) #26	PLXNB3 (ENSODEG00000002965) #27	SRPK3 (ENSODEG00000002869) #28	IDH3G (ENSODEG00000002774) #29	SSR4 (ENSODEG00000002732) #30	PDZD4 (ENSODEG00000005482) #31	L1CAM (ENSODEG00000005259) #32	ENSODEG00000005204	AVPR2 (ENSODEG00000005166) #34	ARHGAP4 (ENSODEG00000005124) #33	ENSODEG00000005100 #35	RENBP (ENSODEG00000005065) #36
Long-tailed chinchilla	MODERN SPECIES	287									ENSCLAG00000002477	ZFP92 (ENSCLAG00000002658) #17	TREX2 (ENSCLAG00000002698) #18	HAUS7 (ENSCLAG00000002789) #19	BGN (ENSCLAG00000003040) #20	ATP2B3 (ENSCLAG00000006386) #21	CCNQ (ENSCLAG00000008202)	DUSP9 (ENSCLAG00000008316) #22	PNCK (ENSCLAG00000002167) #23	ENSCLAG00000002550 #24	BCAP31 (ENSCLAG00000002843) #25	ABCD1 (ENSCLAG00000001650) #26	PLXNB3 (ENSCLAG00000001828) #27	SRPK3 (ENSCLAG00000001932) #28	IDH3G (ENSCLAG00000002456) #29	SSR4 (ENSCLAG00000002670) #30	PDZD4 (ENSCLAG00000002707) #31	L1CAM (ENSCLAG00000001453) #32	AVPR2 (ENSCLAG00000002650) #34	ENSCLAG00000001334 #33	NAA10 (ENSCLAG00000001427) #35	RENBP (ENSCLAG00000003810) #36	HCFC1 (ENSCLAG00000004175) #37
Guinea pig	MODERN SPECIES	148							ENSCPOG00000037160	ENSCPOG00000011291	ENSCPOG00000020829 ##14	ZFP92 (ENSCPOG00000006654) #17	TREX2 (ENSCPOG00000025702) #18	HAUS7 (ENSCPOG00000007497) #19	BGN (ENSCPOG00000023628) #20	ATP2B3 (ENSCPOG00000005102) #21	CCNQ (ENSCPOG00000009250)	DUSP9 (ENSCPOG00000000114) #22	ENSCPOG00000011710 #24	BCAP31 (ENSCPOG00000008510) #25	ABCD1 (ENSCPOG00000011702) #26	PLXNB3 (ENSCPOG00000006868) #27	SRPK3 (ENSCPOG00000006881) #28	IDH3G (ENSCPOG00000006890) #29	SSR4 (ENSCPOG00000006898) #30	PDZD4 (ENSCPOG00000019482) #31	L1CAM (ENSCPOG00000005519) #32	AVPR2 (ENSCPOG00000012697) #34	ENSCPOG00000026143 #33	NAA10 (ENSCPOG00000011495) #35	ENSCPOG00000024784 #36	IRAK1 (ENSCPOG00000039151)	MECP2 (ENSCPOG00000012579)
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000033617	ENSHGLG00000045983 #7	ENSHGLG00000047243	ENSHGLG00000045027	ENSHGLG00000000219	ENSHGLG00000035866 #7	ENSHGLG00000032270	ENSHGLG00000046068	ENSHGLG00000045727 ##14	ENSHGLG00000035589 #17	TREX2 (ENSHGLG00000008010) #18	HAUS7 (ENSHGLG00000002908) #19	BGN (ENSHGLG00000004010) #20	ATP2B3 (ENSHGLG00000000642) #21	CCNQ (ENSHGLG00000003517)	DUSP9 (ENSHGLG00000004236) #22	PNCK (ENSHGLG00000006098) #23	ENSHGLG00000037294 #24	BCAP31 (ENSHGLG00000000710) #25	ABCD1 (ENSHGLG00000001000) #26	PLXNB3 (ENSHGLG00000002203) #27	IDH3G (ENSHGLG00000000443) #29	SSR4 (ENSHGLG00000001720) #30	PDZD4 (ENSHGLG00000001939) #31	L1CAM (ENSHGLG00000003403) #32	AVPR2 (ENSHGLG00000006784) #34	ARHGAP4 (ENSHGLG00000000857) #33	NAA10 (ENSHGLG00000002773) #35	RENBP (ENSHGLG00000009835) #36	HCFC1 (ENSHGLG00000001143) #37	IRAK1 (ENSHGLG00000002116)
Sciuridae	ANCESTRAL SPECIES	27	ENSGT00940000162167 #9	ENSGT00940000155935.cb #10	ENSGT00940000158229 #11	ENSGT00530000063872.A #12	ENSGT01030000234522.C.b.e.a.a.a.b #13	ENSGT01030000234522.C.b.e.a.a.a.a.b #14	ENSGT01030000234522.C.b.e.a.a.a.a.a.a ##14	ENSGT00950000182890.D.c.b.a.a.a #16	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000155445	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Eurasian red squirrel	MODERN SPECIES	156	NSDHL (ENSSVLG00005022122) #11	ZNF185 (ENSSVLG00005022073) #12	PNMA5 (ENSSVLG00005022038) #13	ENSSVLG00005021967 ##14	PNMA3 (ENSSVLG00005021940) #14	ENSSVLG00005021915 ##14	ENSSVLG00005021891 ##14	ENSSVLG00005021871	ENSSVLG00005021782 #16	ENSSVLG00005021735 ##14	ZFP92 (ENSSVLG00005021718) #17	HAUS7 (ENSSVLG00005021619) #19	BGN (ENSSVLG00005021572) #20	ATP2B3 (ENSSVLG00005020846) #21	CCNQ (ENSSVLG00005020662)	DUSP9 (ENSSVLG00005020621) #22	PNCK (ENSSVLG00005020384) #23	ENSSVLG00005020284 #24	BCAP31 (ENSSVLG00005020208) #25	ABCD1 (ENSSVLG00005020163) #26	ENSSVLG00005020066 #27	SRPK3 (ENSSVLG00005020004) #28	IDH3G (ENSSVLG00005019902) #29	SSR4 (ENSSVLG00005019816) #30	PDZD4 (ENSSVLG00005019686) #31	AVPR2 (ENSSVLG00005019578) #34	ENSSVLG00005019536	ARHGAP4 (ENSSVLG00005019458) #33	NAA10 (ENSSVLG00005019123) #35	RENBP (ENSSVLG00005019023) #36	HCFC1 (ENSSVLG00005018524) #37
Marmotini	ANCESTRAL SPECIES	83								ENSGT00950000182890.D.c.b.a.a.a #16	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000155445	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Alpin marmot	MODERN SPECIES	541																ENSMMMG00000001424 #22
Marmotini_b	ANCESTRAL SPECIES	124								ENSGT00940000153582.b.a.a.b	ENSGT01030000234522.C.b.e.a.a.a.a.a.b ##14	ENSGT00940000162887 #17	ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000155445	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT00950000182955.a.b.a #26	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37
Arctic ground squirrel	MODERN SPECIES	562								ZNF275 (ENSUPAG00010012750)	ENSUPAG00010012742 ##14	ZFP92 (ENSUPAG00010012725) #17	TREX2 (ENSUPAG00010012721) #18	HAUS7 (ENSUPAG00010012697) #19	BGN (ENSUPAG00010012684) #20	ATP2B3 (ENSUPAG00010012590) #21	CCNQ (ENSUPAG00010012574)	DUSP9 (ENSUPAG00010012557) #22	PNCK (ENSUPAG00010012527) #23	ENSUPAG00010012523 #24	ABCD1 (ENSUPAG00010012506) #26	ENSUPAG00010012496	ENSUPAG00010012465 #27	SRPK3 (ENSUPAG00010012441) #28	IDH3G (ENSUPAG00010012400) #29	SSR4 (ENSUPAG00010012375) #30	PDZD4 (ENSUPAG00010012358) #31	L1CAM (ENSUPAG00010012204) #32	AVPR2 (ENSUPAG00010012191) #34	ARHGAP4 (ENSUPAG00010012018) #33	NAA10 (ENSUPAG00010011976) #35	RENBP (ENSUPAG00010011941) #36	HCFC1 (ENSUPAG00010011877) #37
Squirrel	MODERN SPECIES	409						ENSSTOG00000032558	ZNF275 (ENSSTOG00000022633)	ENSSTOG00000033034 ##14	ENSSTOG00000029369	ZFP92 (ENSSTOG00000009126) #17	TREX2 (ENSSTOG00000027213) #18	HAUS7 (ENSSTOG00000022988) #19	BGN (ENSSTOG00000008058) #20	ATP2B3 (ENSSTOG00000008068) #21	CCNQ (ENSSTOG00000008103)	DUSP9 (ENSSTOG00000008115) #22	PNCK (ENSSTOG00000008119) #23	ENSSTOG00000026886 #24	BCAP31 (ENSSTOG00000008138) #25	ABCD1 (ENSSTOG00000008153) #26	ENSSTOG00000008188	PLXNB3 (ENSSTOG00000008197) #27	SRPK3 (ENSSTOG00000008233) #28	IDH3G (ENSSTOG00000008261) #29	SSR4 (ENSSTOG00000008278) #30	PDZD4 (ENSSTOG00000021423) #31	L1CAM (ENSSTOG00000008316) #32	AVPR2 (ENSSTOG00000008352) #34	ARHGAP4 (ENSSTOG00000022503) #33	NAA10 (ENSSTOG00000010237) #35	RENBP (ENSSTOG00000010247) #36
Lagomorpha	ANCESTRAL SPECIES	103											ENSGT00390000012715.a #18	ENSGT00390000003937 #19	ENSGT00940000155311.C #20	ENSGT00940000160765 #21	ENSGT00940000155445	ENSGT00940000161880 #22	ENSGT00940000162187 #23	ENSGT00940000155869.v #24	ENSGT00390000011863.c #25	ENSGT01020000230394.e.a.a.b.a.b #27	ENSGT00940000157877.b #28	ENSGT00950000182989.D.a.a.g.a #29	ENSGT00390000008992 #30	ENSGT00950000183062.a.b #31	ENSGT00940000157506 #32	ENSGT01050000244882.b.c.b #34	ENSGT00950000182824.a.b.b #33	ENSGT00550000074803 #35	ENSGT00390000013740 #36	ENSGT00940000161383 #37	ENSGT00390000011272
Rabbit	MODERN SPECIES	549											TREX2 (ENSOCUG00000025054) #18	ENSOCUG00000002376 #19	BGN (ENSOCUG00000023931) #20	ATP2B3 (ENSOCUG00000029623) #21	CCNQ (ENSOCUG00000002393)	DUSP9 (ENSOCUG00000021158) #22	PNCK (ENSOCUG00000002399) #23	BCAP31 (ENSOCUG00000017921) #25	PLXNB3 (ENSOCUG00000016506) #27	ABCD1 (ENSOCUG00000017922) #26	IDH3G (ENSOCUG00000016554) #29	SSR4 (ENSOCUG00000027360) #30	ENSOCUG00000026260 #24	PDZD4 (ENSOCUG00000017200) #31	L1CAM (ENSOCUG00000001102) #32	AVPR2 (ENSOCUG00000015695) #34	ARHGAP4 (ENSOCUG00000001107) #33	NAA10 (ENSOCUG00000001111) #35	RENBP (ENSOCUG00000025840) #36	HCFC1 (ENSOCUG00000001113) #37	TMEM187 (ENSOCUG00000001116)
Pika	MODERN SPECIES	8486																DUSP9 (ENSOPRG00000012013) #22