Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000162889 #22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000162889 #22
Sarcopterygii	ANCESTRAL SPECIES	389											ENSGT00940000167200	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00910000144277	ENSGT00390000008818	ENSGT00390000012014.A
Tetrapoda	ANCESTRAL SPECIES	6											ENSGT00940000167200	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT01030000235951	ENSGT00940000155311.B	ENSGT00940000154486.b.b	ENSGT00940000154486.b.a.a.b	ENSGT00390000016151
Amniota	ANCESTRAL SPECIES	6										ENSGT00940000167200	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162768.B	ENSGT00950000183546	ENSGT00940000163601	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT01030000235951	ENSGT00940000155311.B	ENSGT00940000154486.b.b	ENSGT00940000154486.b.a.a.b	ENSGT00390000016151
Mammalia	ANCESTRAL SPECIES	7	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000160683 #33	ENSGT00940000161997.a #32	ENSGT00940000154486.b.b	ENSGT00940000154486.b.a.a.b	ENSGT00390000016151
Theria	ANCESTRAL SPECIES	58	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000163258 #10	ENSGT00940000158193 #11	ENSGT00950000182895.a.b #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Eutheria	ANCESTRAL SPECIES	5	ENSGT00940000158579	ENSGT00940000163845	ENSGT00940000163258 #10	ENSGT00940000158193 #11	ENSGT00950000182895.a.b #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000163845	ENSGT00940000158579	ENSGT00940000155183	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158579	ENSGT00940000163845	ENSGT00940000163258 #10	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Primates	ANCESTRAL SPECIES	1	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158579	ENSGT00940000163845	ENSGT00940000163258 #10	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Haplorrhini	ANCESTRAL SPECIES	22	ENSGT00940000164049	ENSGT00940000163527 #8	ENSGT00940000158579	ENSGT00940000163845	ENSGT00940000163258.i #10	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00940000158579.l.b.b.b	ENSGT00940000163258.i.b ##10	ENSGT00940000163845.c	ENSGT00940000163258.i.a #10	ENSGT00940000158579.l.a	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Catarrhini	ANCESTRAL SPECIES	25	ENSGT00940000158579.l.b.b.b	ENSGT00940000163258.i.b ##10	ENSGT00940000163845.c	ENSGT00940000163258.i.a #10	ENSGT00940000158579.l.a	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j.b ##12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Hominoidea	ANCESTRAL SPECIES	26	ENSGT00940000163527.c.a ##8	ENSGT00940000163258.i.a.a #10	ENSGT00940000158579.l.a	ENSGT00940000158193 #11	ENSGT00950000182895.a.a.a.b.f ##12	ENSGT00950000182895.a.b.j.b ##12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000018577 #15	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Hominidae	ANCESTRAL SPECIES	25	ENSGT00960000187213	ENSGT00940000163527.d #8	ENSGT00940000163527.c.a ##8	ENSGT00940000163258.i.a.a #10	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j.b ##12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000018577 #15	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Orangutan	MODERN SPECIES	12	KRTAP10-11 (ENSPPYG00000011497) #7	KRTAP12-3 (ENSPPYG00000011499) #8	ENSPPYG00000033473 #9	KRTAP10-12 (ENSPPYG00000011501) #10	UBE2G2 (ENSPPYG00000035359) #11	ENSPPYG00000011503 #12	PTTG1IP (ENSPPYG00000036754) #13	ITGB2 (ENSPPYG00000011506) #14	ENSPPYG00000031942 #15	SLX9 (ENSPPYG00000011509) #16	ADARB1 (ENSPPYG00000011514) #17	POFUT2 (ENSPPYG00000011516) #18	ENSPPYG00000011521 #19	SLC19A1 (ENSPPYG00000011523) #20	PCBP3 (ENSPPYG00000011525) #21	COL6A1 (ENSPPYG00000034634) #22	COL6A2 (ENSPPYG00000011527) #23	FTCD (ENSPPYG00000011528) #24	SPATC1L (ENSPPYG00000011529) #25	LSS (ENSPPYG00000011530) #26	MCM3AP (ENSPPYG00000011532) #27	ENSPPYG00000011535 #28	C21orf58 (ENSPPYG00000011536) #29	PCNT (ENSPPYG00000011537) #30	DIP2A (ENSPPYG00000011538) #31	S100B (ENSPPYG00000011539) #32	PRMT2 (ENSPPYG00000011540) #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	27	ENSGT00940000163527.d #8	ENSGT00940000163527.c.a ##8	ENSGT00940000163258.i.a.a #10	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j.b ##12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709.f #16	ENSGT00390000018577 #15	ENSGT00390000015709.e.a #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Homo/Pan group	ANCESTRAL SPECIES	26	ENSGT00940000163527.d #8	ENSGT00940000163527.c.a ##8	ENSGT00940000163258.i.a.a #10	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j.b ##12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709.f #16	ENSGT00390000018577 #15	ENSGT00390000015709.e.a #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Pan	ANCESTRAL SPECIES	27	ENSGT00940000165026.b #7	ENSGT00940000163527.d #8	ENSGT00940000163527.c.a ##8	ENSGT00940000163258.i.a.a #10	ENSGT00940000158193 #11	ENSGT00950000182895.a.a.a.b.f ##12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000018577 #15	ENSGT00390000015709.e.a.a #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00530000064552	ENSGT00940000160683 #33
Bonobo	MODERN SPECIES	12	KRTAP10-11 (ENSPPAG00000032384) #7	KRTAP12-3 (ENSPPAG00000032261) #8	KRTAP12-1 (ENSPPAG00000030724) ##8	ENSPPAG00000030769 #10	UBE2G2 (ENSPPAG00000031274) #11	ENSPPAG00000031634 ##12	PTTG1IP (ENSPPAG00000032064) #13	ITGB2 (ENSPPAG00000033785) #14	ENSPPAG00000034706 #15	ENSPPAG00000034875 #16	ADARB1 (ENSPPAG00000027139) #17	POFUT2 (ENSPPAG00000035189) #18	ENSPPAG00000014049 #19	SLC19A1 (ENSPPAG00000027716) #20	PCBP3 (ENSPPAG00000021940) #21	COL6A1 (ENSPPAG00000027819) #22	COL6A2 (ENSPPAG00000029776) #23	FTCD (ENSPPAG00000032812) #24	SPATC1L (ENSPPAG00000034632) #25	LSS (ENSPPAG00000035048) #26	MCM3AP (ENSPPAG00000025048) #27	YBEY (ENSPPAG00000030933) #28	C21orf58 (ENSPPAG00000031586) #29	PCNT (ENSPPAG00000034343) #30	DIP2A (ENSPPAG00000038882) #31	ENSPPAG00000030816	PRMT2 (ENSPPAG00000035050) #33
Human	MODERN SPECIES	13	KRTAP12-4 (ENSG00000212933)	KRTAP12-3 (ENSG00000205439) #8	KRTAP12-2 (ENSG00000221864) ##8	KRTAP12-1 (ENSG00000187175) ##8	KRTAP10-12 (ENSG00000189169) #10	UBE2G2 (ENSG00000184787) #11	SUMO3 (ENSG00000184900) ##12	PTTG1IP (ENSG00000183255) #13	ITGB2 (ENSG00000160255) #14	SLX9 (ENSG00000160256) #16	ADARB1 (ENSG00000197381) #17	POFUT2 (ENSG00000186866) #18	COL18A1 (ENSG00000182871) #19	SLC19A1 (ENSG00000173638) #20	PCBP3 (ENSG00000183570) #21	COL6A1 (ENSG00000142156) #22	COL6A2 (ENSG00000142173) #23	FTCD (ENSG00000160282) #24	SPATC1L (ENSG00000160284) #25	LSS (ENSG00000160285) #26	MCM3AP (ENSG00000160294) #27	YBEY (ENSG00000182362) #28	C21orf58 (ENSG00000160298) #29	PCNT (ENSG00000160299) #30	ENSG00000286224	DIP2A (ENSG00000160305) #31	S100B (ENSG00000160307) #32	PRMT2 (ENSG00000160310) #33
Gorilla	MODERN SPECIES	12	KRTAP10-8 (ENSGGOG00000007320) ##10	ENSGGOG00000038357	ENSGGOG00000036857 #9	KRTAP10-12 (ENSGGOG00000012454) #10	UBE2G2 (ENSGGOG00000038153) #11	ENSGGOG00000022636 ##12	PTTG1IP (ENSGGOG00000002077) #13	ITGB2 (ENSGGOG00000014457) #14	ENSGGOG00000014477 #15	ENSGGOG00000014482 #16	ADARB1 (ENSGGOG00000013244) #17	POFUT2 (ENSGGOG00000015065) #18	ENSGGOG00000011704 #19	SLC19A1 (ENSGGOG00000011734) #20	PCBP3 (ENSGGOG00000003683) #21	COL6A1 (ENSGGOG00000001462) #22	COL6A2 (ENSGGOG00000003661) #23	FTCD (ENSGGOG00000002869) #24	SPATC1L (ENSGGOG00000012943) #25	LSS (ENSGGOG00000015701) #26	MCM3AP (ENSGGOG00000015716) #27	YBEY (ENSGGOG00000015733) #28	C21orf58 (ENSGGOG00000041767) #29	PCNT (ENSGGOG00000011788) #30	DIP2A (ENSGGOG00000011841) #31	ENSGGOG00000027399	PRMT2 (ENSGGOG00000010719) #33
Cercopithecidae	ANCESTRAL SPECIES	28	ENSGT00940000163845.c	ENSGT00940000163258.i.b ##10	ENSGT00940000158579.l.b.b.b	ENSGT00940000163258.j ##10	ENSGT00940000158579.l.a	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j.b ##12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Cercopithecinae	ANCESTRAL SPECIES	23	ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j.b ##12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Cercopithecinae_a	ANCESTRAL SPECIES	22	ENSGT00940000158579.l.b.b.b	ENSGT00940000163527.c.c ##8	ENSGT00940000164049.b.a	ENSGT00940000163527.d #8	ENSGT00940000163527.c.d ##8	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j.b.f ##12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Macaca	ANCESTRAL SPECIES	3	ENSGT00940000158579.l.b.a	ENSGT00940000163845.c	ENSGT00940000163258.i.b ##10	ENSGT00940000164049.b.a	ENSGT00940000163527.c.d ##8	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j.b.f ##12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Macaca_a	ANCESTRAL SPECIES																	ENSGT00940000162889 #22
Rhesus	MODERN SPECIES	13	KRTAP10-8 (ENSMMUG00000048049) ##10	KRTAP10-9 (ENSMMUG00000043221)	ENSMMUG00000022561 ##8	TSPEAR (ENSMMUG00000022556)	UBE2G2 (ENSMMUG00000045077) #11	SUMO3 (ENSMMUG00000048545) ##12	PTTG1IP (ENSMMUG00000046352) #13	ITGB2 (ENSMMUG00000000951) #14	SLX9 (ENSMMUG00000000953) #16	ENSMMUG00000061023	ADARB1 (ENSMMUG00000010695) #17	POFUT2 (ENSMMUG00000010700) #18	COL18A1 (ENSMMUG00000004472) #19	SLC19A1 (ENSMMUG00000004477) #20	PCBP3 (ENSMMUG00000003825) #21	COL6A1 (ENSMMUG00000000544) #22	ENSMMUG00000055486	COL6A2 (ENSMMUG00000022317) #23	FTCD (ENSMMUG00000022324) #24	SPATC1L (ENSMMUG00000058335) #25	ENSMMUG00000064313	LSS (ENSMMUG00000022329) #26	MCM3AP (ENSMMUG00000022331) #27	YBEY (ENSMMUG00000012911) #28	C3H21orf58 (ENSMMUG00000039473) #29	PCNT (ENSMMUG00000012914) #30	DIP2A (ENSMMUG00000015797) #31	S100B (ENSMMUG00000063077) #32	PRMT2 (ENSMMUG00000015803) #33	ENSMMUG00000053532
Pig-tailed macaque	MODERN SPECIES	503	KRTAP10-9 (ENSMNEG00000036736)	ENSMNEG00000043238 ##8	ENSMNEG00000009948 #9	ENSMNEG00000028794 ##8	TSPEAR (ENSMNEG00000045469)	UBE2G2 (ENSMNEG00000028583) #11	ENSMNEG00000045199 ##12	PTTG1IP (ENSMNEG00000030046) #13	ITGB2 (ENSMNEG00000031016) #14	SLX9 (ENSMNEG00000044629) #16	ADARB1 (ENSMNEG00000031543) #17	POFUT2 (ENSMNEG00000041753) #18	COL18A1 (ENSMNEG00000032048) #19	SLC19A1 (ENSMNEG00000029970) #20	PCBP3 (ENSMNEG00000035551) #21	COL6A1 (ENSMNEG00000043587) #22	COL6A2 (ENSMNEG00000035628) #23	FTCD (ENSMNEG00000045053) #24	SPATC1L (ENSMNEG00000028822) #25	LSS (ENSMNEG00000044250) #26	MCM3AP (ENSMNEG00000029780) #27	YBEY (ENSMNEG00000039114) #28	C21orf58 (ENSMNEG00000029851) #29	PCNT (ENSMNEG00000036330) #30	DIP2A (ENSMNEG00000040653) #31	ENSMNEG00000034764	PRMT2 (ENSMNEG00000038764) #33
Cercopithecinae_b	ANCESTRAL SPECIES	29	ENSGT00940000163258.i.b ##10	ENSGT00940000158579.l.b.b.b	ENSGT00940000163527.c.c ##8	ENSGT00940000163527.d #8	ENSGT00940000163527.c.d ##8	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j.a.a ##12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Cercopithecinae_d	ANCESTRAL SPECIES	36	ENSGT00940000163258.i.b ##10	ENSGT00940000158579.l.b.b.b	ENSGT00940000163527.c.c ##8	ENSGT00940000163527.c.d ##8	ENSGT00940000158579.l.a	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j.a.a ##12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00530000064552	ENSGT00940000160683 #33
Sooty mangabey	MODERN SPECIES	465	KRTAP10-8 (ENSCATG00000040413) ##10	ENSCATG00000013543	ENSCATG00000040752 ##8	ENSCATG00000042131	ENSCATG00000044136 ##8	UBE2G2 (ENSCATG00000012779) #11	ENSCATG00000041498 ##12	PTTG1IP (ENSCATG00000033867) #13	ITGB2 (ENSCATG00000039608) #14	SLX9 (ENSCATG00000019293) #16	ADARB1 (ENSCATG00000029876) #17	POFUT2 (ENSCATG00000034952) #18	COL18A1 (ENSCATG00000038222) #19	SLC19A1 (ENSCATG00000036905) #20	PCBP3 (ENSCATG00000038419) #21	COL6A1 (ENSCATG00000040431) #22	COL6A2 (ENSCATG00000041547) #23	FTCD (ENSCATG00000041690) #24	SPATC1L (ENSCATG00000037303) #25	LSS (ENSCATG00000038397) #26	MCM3AP (ENSCATG00000039155) #27	YBEY (ENSCATG00000035660) #28	C21orf58 (ENSCATG00000007258) #29	PCNT (ENSCATG00000040523) #30	DIP2A (ENSCATG00000025334) #31	ENSCATG00000037851	PRMT2 (ENSCATG00000031360) #33
Drill	MODERN SPECIES	1221															PCBP3 (ENSMLEG00000038785) #21	COL6A1 (ENSMLEG00000029822) #22	COL6A2 (ENSMLEG00000017555) #23	FTCD (ENSMLEG00000008656) #24	SPATC1L (ENSMLEG00000028783) #25	LSS (ENSMLEG00000033329) #26	MCM3AP (ENSMLEG00000041901) #27	YBEY (ENSMLEG00000034149) #28	ENSMLEG00000033463	PCNT (ENSMLEG00000036135) #30	DIP2A (ENSMLEG00000040859) #31	ENSMLEG00000030850	PRMT2 (ENSMLEG00000041912) #33	ENSMLEG00000043464	ENSMLEG00000032551
Rhinopithecus	ANCESTRAL SPECIES	210		ENSGT00940000158579.l.b.b.b	ENSGT00940000163258.j ##10	ENSGT00940000158579.l.a	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j.b ##12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162768.B	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00530000064552	ENSGT00940000160683 #33
Golden snub-nosed monkey	MODERN SPECIES	1482										SLX9 (ENSRROG00000045309) #16	ADARB1 (ENSRROG00000042856) #17	POFUT2 (ENSRROG00000036833) #18	COL18A1 (ENSRROG00000041309) #19	SLC19A1 (ENSRROG00000032854) #20	PCBP3 (ENSRROG00000034567) #21	COL6A1 (ENSRROG00000034310) #22	COL6A2 (ENSRROG00000038780) #23	FTCD (ENSRROG00000045071) #24	SPATC1L (ENSRROG00000030883) #25	LSS (ENSRROG00000040461) #26	MCM3AP (ENSRROG00000006150) #27	YBEY (ENSRROG00000039507) #28	C21orf58 (ENSRROG00000043985) #29	PCNT (ENSRROG00000034301) #30	DIP2A (ENSRROG00000034962) #31	ENSRROG00000029645	PRMT2 (ENSRROG00000041142) #33
Black snub-nosed monkey	MODERN SPECIES	924	ENSRBIG00000043765	ENSRBIG00000036000	ENSRBIG00000030166 ##8	ENSRBIG00000018796	TSPEAR (ENSRBIG00000032685)	UBE2G2 (ENSRBIG00000026486) #11	SUMO3 (ENSRBIG00000031989) ##12	PTTG1IP (ENSRBIG00000036920) #13	ITGB2 (ENSRBIG00000031250) #14	SLX9 (ENSRBIG00000035044) #16	ADARB1 (ENSRBIG00000033033) #17	POFUT2 (ENSRBIG00000037445) #18	COL18A1 (ENSRBIG00000030037) #19	SLC19A1 (ENSRBIG00000042544) #20	ENSRBIG00000028177	COL6A1 (ENSRBIG00000044937) #22	COL6A2 (ENSRBIG00000038516) #23
Platyrrhini	ANCESTRAL SPECIES	31	ENSGT00940000158579.l.b.b.a.b	ENSGT00510000047718	ENSGT00940000163845.d	ENSGT00940000158579.l.b.a	ENSGT00940000158579.l.b.b.a.a.b	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Cebidae	ANCESTRAL SPECIES	32	ENSGT00940000163845.c	ENSGT00940000158579.l.b.b.a.b	ENSGT00510000047718	ENSGT00940000158579.l.b.a	ENSGT00940000158579.l.b.b.a.a.b	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00530000064552	ENSGT00940000160683 #33
Marmoset	MODERN SPECIES	13	ENSCJAG00000000296	ENSCJAG00000000301	ENSCJAG00000063198	UBE2G2 (ENSCJAG00000041224) #11	SUMO3 (ENSCJAG00000010529) #12	PTTG1IP (ENSCJAG00000085899) #13	ITGB2 (ENSCJAG00000010554) #14	SLX9 (ENSCJAG00000010599) #16	ENSCJAG00000071675	ADARB1 (ENSCJAG00000018646) #17	ENSCJAG00000081850 #18	COL18A1 (ENSCJAG00000083421) #19	ENSCJAG00000081985	SLC19A1 (ENSCJAG00000001943) #20	PCBP3 (ENSCJAG00000077507) #21	COL6A1 (ENSCJAG00000078346) #22	COL6A2 (ENSCJAG00000001863) #23	FTCD (ENSCJAG00000080609) #24	SPATC1L (ENSCJAG00000085076) #25	LSS (ENSCJAG00000086602) #26	MCM3AP (ENSCJAG00000001770) #27	YBEY (ENSCJAG00000080541) #28	ENSCJAG00000001809	PCNT (ENSCJAG00000075934) #30	DIP2A (ENSCJAG00000001624) #31	ENSCJAG00000001606	PRMT2 (ENSCJAG00000001571) #33	ENSCJAG00000074974
Cebidae_a	ANCESTRAL SPECIES	29	ENSGT00940000158579.l.b.b.a.b	ENSGT00510000047718	ENSGT00940000158579.l.b.b.a.a.a	ENSGT00940000158579.l.b.b.b	ENSGT00940000158579.l.b.b.a.a.b	ENSGT00940000158193 #11	ENSGT00950000182895.a.a.a.b.f ##12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00530000064552	ENSGT00940000160683 #33
Capuchin	MODERN SPECIES	112	ENSCCAG00000021982	KRTAP10-9 (ENSCCAG00000027895)	KRTAP10-12 (ENSCCAG00000021834) #10	ENSCCAG00000013274	TSPEAR (ENSCCAG00000034859)	UBE2G2 (ENSCCAG00000035488) #11	ENSCCAG00000024614 ##12	PTTG1IP (ENSCCAG00000030590) #13	ITGB2 (ENSCCAG00000001137) #14	SLX9 (ENSCCAG00000036236) #16	ADARB1 (ENSCCAG00000029934) #17	POFUT2 (ENSCCAG00000020926) #18	COL18A1 (ENSCCAG00000036606) #19	SLC19A1 (ENSCCAG00000026323) #20	PCBP3 (ENSCCAG00000024561) #21	COL6A1 (ENSCCAG00000028601) #22	COL6A2 (ENSCCAG00000027356) #23	FTCD (ENSCCAG00000009041) #24	SPATC1L (ENSCCAG00000030470) #25	LSS (ENSCCAG00000022848) #26	MCM3AP (ENSCCAG00000032869) #27	YBEY (ENSCCAG00000035845) #28	C21orf58 (ENSCCAG00000032298) #29	PCNT (ENSCCAG00000036461) #30	DIP2A (ENSCCAG00000026675) #31	ENSCCAG00000016321	PRMT2 (ENSCCAG00000028685) #33	ENSCCAG00000027671
Bolivian squirrel monkey	MODERN SPECIES	155	PXDN (ENSSBOG00000024455)	MYT1L (ENSSBOG00000029796)	EIPR1 (ENSSBOG00000030265)	ENSSBOG00000022279	ADI1 (ENSSBOG00000029318)	RNASEH1 (ENSSBOG00000025411)	ENSSBOG00000022415	COLEC11 (ENSSBOG00000026886)	ALLC (ENSSBOG00000025429)	DCDC2C (ENSSBOG00000023428)	ENSSBOG00000021838	POFUT2 (ENSSBOG00000026751) #18	COL18A1 (ENSSBOG00000026331) #19	SLC19A1 (ENSSBOG00000024098) #20	PCBP3 (ENSSBOG00000005789) #21	COL6A1 (ENSSBOG00000033262) #22	COL6A2 (ENSSBOG00000024612) #23	FTCD (ENSSBOG00000032120) #24	SPATC1L (ENSSBOG00000028722) #25	LSS (ENSSBOG00000030101) #26	MCM3AP (ENSSBOG00000024259) #27	YBEY (ENSSBOG00000030954) #28	ENSSBOG00000029549 #29	PCNT (ENSSBOG00000031686) #30	ENSSBOG00000034552	DIP2A (ENSSBOG00000027645) #31	ENSSBOG00000027563	PRMT2 (ENSSBOG00000030953) #33
Tarsier	MODERN SPECIES	3858																COL6A1 (ENSTSYG00000014354) #22	COL6A2 (ENSTSYG00000002945) #23	FTCD (ENSTSYG00000001539) #24	SPATC1L (ENSTSYG00000006728) #25	LSS (ENSTSYG00000005870) #26	MCM3AP (ENSTSYG00000007422) #27	YBEY (ENSTSYG00000013467) #28
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00940000163258 #10	ENSGT00940000163441.f.a.a.a	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000163845	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Lemuriformes	ANCESTRAL SPECIES	88						ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Lemuriformes_a	ANCESTRAL SPECIES	181						ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b.s #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00940000173680	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Greater bamboo lemur	MODERN SPECIES	183										SLX9 (ENSPSMG00000024053) #16	ADARB1 (ENSPSMG00000024062) #17	POFUT2 (ENSPSMG00000024075) #18	COL18A1 (ENSPSMG00000024089) #19	SLC19A1 (ENSPSMG00000024101) #20	PCBP3 (ENSPSMG00000024176) #21	COL6A1 (ENSPSMG00000024203) #22	COL6A2 (ENSPSMG00000024283) #23	ENSPSMG00000024299	SPATC1L (ENSPSMG00000024302) #25	ENSPSMG00000024307 #26
Coquerels sifaka	MODERN SPECIES	543					ENSPCOG00000013309 #10	UBE2G2 (ENSPCOG00000026083) #11	ENSPCOG00000019098 #12	PTTG1IP (ENSPCOG00000020581) #13	ITGB2 (ENSPCOG00000014923) #14	SLX9 (ENSPCOG00000020078) #16	ADARB1 (ENSPCOG00000020406) #17	POFUT2 (ENSPCOG00000016074) #18	COL18A1 (ENSPCOG00000014698) #19	SLC19A1 (ENSPCOG00000027927) #20	PCBP3 (ENSPCOG00000013797) #21	COL6A1 (ENSPCOG00000014806) #22	COL6A2 (ENSPCOG00000016356) #23	FTCD (ENSPCOG00000021020) #24	SPATC1L (ENSPCOG00000025023) #25	LSS (ENSPCOG00000019936) #26	MCM3AP (ENSPCOG00000024498) #27	YBEY (ENSPCOG00000015606) #28	PCNT (ENSPCOG00000014872) #30	DIP2A (ENSPCOG00000016283) #31	S100B (ENSPCOG00000018301) #32	PRMT2 (ENSPCOG00000028679) #33
Bushbaby	MODERN SPECIES	243	ENSOGAG00000033488	ENSOGAG00000012063 #11	SUMO3 (ENSOGAG00000004715) #12	PTTG1IP (ENSOGAG00000005597) #13	ITGB2 (ENSOGAG00000009633) #14	SLX9 (ENSOGAG00000009641) #16	ENSOGAG00000027833	ENSOGAG00000026126	ADARB1 (ENSOGAG00000017167) #17	POFUT2 (ENSOGAG00000017168) #18	ENSOGAG00000024946	COL18A1 (ENSOGAG00000000892) #19	SLC19A1 (ENSOGAG00000032361) #20	ENSOGAG00000008044	ENSOGAG00000024419	COL6A1 (ENSOGAG00000031247) #22	COL6A2 (ENSOGAG00000005077) #23	FTCD (ENSOGAG00000008226) #24	SPATC1L (ENSOGAG00000008230) #25	LSS (ENSOGAG00000009183) #26	MCM3AP (ENSOGAG00000009196) #27	YBEY (ENSOGAG00000029299) #28	PCNT (ENSOGAG00000001796) #30	DIP2A (ENSOGAG00000013139) #31	PRMT2 (ENSOGAG00000013155) #33
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00510000047718	ENSGT00940000158579	ENSGT00940000163845	ENSGT00940000163258 #10	ENSGT00940000155183	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Glires	ANCESTRAL SPECIES	2	ENSGT00940000163258 #10	ENSGT00940000163441.f.a.a.a	ENSGT00940000158579	ENSGT00940000163845	ENSGT00940000155183	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Rodentia	ANCESTRAL SPECIES	2	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000155183	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000155183	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989.h #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Eurasian red squirrel	MODERN SPECIES	1	LRRC3 (ENSSVLG00005023556)	ENSSVLG00005023369 #10	ENSSVLG00005023080	ENSSVLG00005022707	ENSSVLG00005022624	TSPEAR (ENSSVLG00005022529)	UBE2G2 (ENSSVLG00005022482) #11	ENSSVLG00005022452 #12	ENSSVLG00005022355 #13	ITGB2 (ENSSVLG00005022020) #14	SLX9 (ENSSVLG00005021933) #16	ADARB1 (ENSSVLG00005021761) #17	POFUT2 (ENSSVLG00005021705) #18	SLC19A1 (ENSSVLG00005020132) #20	PCBP3 (ENSSVLG00005019852) #21	COL6A1 (ENSSVLG00005019712) #22	COL6A2 (ENSSVLG00005019580) #23	ENSSVLG00005019331 #24	ENSSVLG00005019107 #24	SPATC1L (ENSSVLG00005019009) #25	LSS (ENSSVLG00005018385) #26	MCM3AP (ENSSVLG00005018327) #27	YBEY (ENSSVLG00005018192) #28	ENSSVLG00005018102 #29	ENSSVLG00005018080	DIP2A (ENSSVLG00005015407) #31	S100B (ENSSVLG00005014991) #32	PRMT2 (ENSSVLG00005014458) #33
Marmotini	ANCESTRAL SPECIES	13	ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j.o #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989.h #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000163601	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000160683 #33
Marmotini_b	ANCESTRAL SPECIES	182					ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j.n.a #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989.h #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000163601	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000160683 #33
Arctic ground squirrel	MODERN SPECIES	835															PCBP3 (ENSUPAG00010002550) #21	COL6A1 (ENSUPAG00010002516) #22
Hystricomorpha	ANCESTRAL SPECIES	60	ENSGT00390000011821.b	ENSGT00940000154826	ENSGT00390000003874	ENSGT00510000047718	ENSGT00940000155183	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Hystricomorpha_a	ANCESTRAL SPECIES	37	ENSGT00390000011821.b	ENSGT00940000154826	ENSGT00390000003874	ENSGT00510000047718	ENSGT00940000155183	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Hystricomorpha_b	ANCESTRAL SPECIES	34	ENSGT00390000011821.b	ENSGT00940000154826	ENSGT00390000003874	ENSGT00510000047718	ENSGT00940000155183	ENSGT00940000158193 #11	ENSGT00950000182895.a.a.a.b.f ##12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Long-tailed chinchilla	MODERN SPECIES	114	ENSCLAG00000007645 #10	ENSCLAG00000004501	ENSCLAG00000005246 #10	ENSCLAG00000005933	ENSCLAG00000006283	UBE2G2 (ENSCLAG00000006675) #11	ENSCLAG00000006914 ##12	PTTG1IP (ENSCLAG00000008686) #13	ITGB2 (ENSCLAG00000011530) #14	SLX9 (ENSCLAG00000015540) #16	ADARB1 (ENSCLAG00000010595) #17	POFUT2 (ENSCLAG00000014869) #18	COL18A1 (ENSCLAG00000009590) #19	SLC19A1 (ENSCLAG00000005746) #20	PCBP3 (ENSCLAG00000006667) #21	COL6A1 (ENSCLAG00000004686) #22	COL6A2 (ENSCLAG00000009215) #23	FTCD (ENSCLAG00000014029) #24	SPATC1L (ENSCLAG00000016436) #25	LSS (ENSCLAG00000011987) #26	MCM3AP (ENSCLAG00000013358) #27	YBEY (ENSCLAG00000006892) #28	ENSCLAG00000007820 #29	PCNT (ENSCLAG00000012697) #30	DIP2A (ENSCLAG00000013614) #31	S100B (ENSCLAG00000009038) #32	PRMT2 (ENSCLAG00000006778) #33
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000038544	ENSHGLG00000043957	ENSHGLG00000005505	ENSHGLG00000014199	ENSHGLG00000009258 #11	ENSHGLG00000037860 #12	PTTG1IP (ENSHGLG00000033185) #13	ENSHGLG00000049629	ITGB2 (ENSHGLG00000013472) #14	SLX9 (ENSHGLG00000045493) #16	ADARB1 (ENSHGLG00000005906) #17	POFUT2 (ENSHGLG00000041783) #18	ENSHGLG00000018308 #19	SLC19A1 (ENSHGLG00000013143) #20	PCBP3 (ENSHGLG00000018620) #21	COL6A1 (ENSHGLG00000017878) #22	COL6A2 (ENSHGLG00000009116) #23	FTCD (ENSHGLG00000048038) #24	SPATC1L (ENSHGLG00000013076) #25	LSS (ENSHGLG00000008767) #26	ENSHGLG00000012528 #27	RCAN1 (ENSHGLG00000033178)	KCNE1 (ENSHGLG00000035496)	ENSHGLG00000016289	ENSHGLG00000040274	KCNE2 (ENSHGLG00000047687)	ENSHGLG00000021210	SLC5A3 (ENSHGLG00000038228)	ENSHGLG00000010278	ENSHGLG00000040041	ITSN1 (ENSHGLG00000004918)
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000155183	ENSGT00940000161526.b	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Myomorpha	ANCESTRAL SPECIES	14	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000155183	ENSGT00940000161526.b	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a.c #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Muroidea	ANCESTRAL SPECIES	11	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000155183	ENSGT00940000161526.b	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a.c #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000155183.e	ENSGT00940000161526.b	ENSGT00940000155183.f	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a.c #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000155183.e.a.b	ENSGT00940000161526.b	ENSGT00940000155183.f	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a.c #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531
Cricetinae	ANCESTRAL SPECIES	24	ENSGT00940000155183.e.a.b.a.b	ENSGT00940000161526.b	ENSGT00940000155183.f	ENSGT00940000155183.e.a.b.a.a	ENSGT00940000155183.e.a.a.b.a	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a.c #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000160846.c	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808
Chinese hamster chok1gshd	MODERN SPECIES	204	ENSCGRG00001012982	ENSCGRG00001016181	ENSCGRG00001013697	ENSCGRG00001023741	ENSCGRG00001011367	Ube2g2 (ENSCGRG00001012138) #11	Sumo3 (ENSCGRG00001014923) #12	Pttg1ip (ENSCGRG00001000333) #13	Itgb2 (ENSCGRG00001016235) #14	Fam207a (ENSCGRG00001016236) #16	Adarb1 (ENSCGRG00001023922) #17	Pofut2 (ENSCGRG00001022765) #18	Col18a1 (ENSCGRG00001013369) #19	SLC19A1 (ENSCGRG00001016846) #20	Pcbp3 (ENSCGRG00001006836) #21	Col6a1 (ENSCGRG00001017421) #22	Col6a2 (ENSCGRG00001003342) #23	Ftcd (ENSCGRG00001011730) #24	Spatc1l (ENSCGRG00001017850) #25	Lss (ENSCGRG00001020282) #26	Mcm3ap (ENSCGRG00001015274) #27	Ybey (ENSCGRG00001022036) #28	2610028H24Rik (ENSCGRG00001023849) #29	Pcnt (ENSCGRG00001017614) #30	Dip2a (ENSCGRG00001004170) #31	ENSCGRG00001009479	Prmt2 (ENSCGRG00001010555) #33	ENSCGRG00001002616	ENSCGRG00001024447	Zfp280b (ENSCGRG00001011844)	ENSCGRG00001000305
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a.c #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531
Prairie vole	MODERN SPECIES	352	ENSMOCG00000018107	ENSMOCG00000017419	ENSMOCG00000017107	ENSMOCG00000016087	Tspear (ENSMOCG00000013552)	Ube2g2 (ENSMOCG00000001721) #11	ENSMOCG00000021821 #12	Pttg1ip (ENSMOCG00000020270) #13	Itgb2 (ENSMOCG00000022498) #14	Fam207a (ENSMOCG00000021449) #16	Adarb1 (ENSMOCG00000018324) #17	Pofut2 (ENSMOCG00000013158) #18	Col18a1 (ENSMOCG00000019606) #19	Slc19a1 (ENSMOCG00000008838) #20	Pcbp3 (ENSMOCG00000016127) #21	Col6a1 (ENSMOCG00000015635) #22	Col6a2 (ENSMOCG00000007120) #23	Ftcd (ENSMOCG00000013801) #24	Spatc1l (ENSMOCG00000012025) #25	Lss (ENSMOCG00000020263) #26	Mcm3ap (ENSMOCG00000018380) #27	Ybey (ENSMOCG00000012634) #28	2610028H24Rik (ENSMOCG00000022971) #29	Pcnt (ENSMOCG00000006875) #30	Dip2a (ENSMOCG00000015916) #31	S100b (ENSMOCG00000020304) #32	Prmt2 (ENSMOCG00000017602) #33	Slc5a4a (ENSMOCG00000003852)	Slc5a4b (ENSMOCG00000019990)	Zfp280b (ENSMOCG00000012097)	Gm5134 (ENSMOCG00000021314)
Northern American deer mouse	MODERN SPECIES	13	ENSPEMG00000029694	ENSPEMG00000026871	ENSPEMG00000007691	ENSPEMG00000022026	Ube2g2 (ENSPEMG00000027627) #11	ENSPEMG00000022514	ENSPEMG00000029963 ##12	Pttg1ip (ENSPEMG00000022833) #13	Itgb2 (ENSPEMG00000023793) #14	Fam207a (ENSPEMG00000029013) #16	Adarb1 (ENSPEMG00000022360) #17	Pofut2 (ENSPEMG00000021691) #18	Col18a1 (ENSPEMG00000019720) #19	Slc19a1 (ENSPEMG00000019847) #20	Pcbp3 (ENSPEMG00000000587) #21	Col6a1 (ENSPEMG00000011883) #22	Col6a2 (ENSPEMG00000023614) #23	Ftcd (ENSPEMG00000011905) #24	Spatc1l (ENSPEMG00000015524) #25	Lss (ENSPEMG00000024002) #26	Mcm3ap (ENSPEMG00000014754) #27	Ybey (ENSPEMG00000000492) #28	2610028H24Rik (ENSPEMG00000009493) #29	Pcnt (ENSPEMG00000012406) #30	Dip2a (ENSPEMG00000011906) #31	S100b (ENSPEMG00000024584) #32	Prmt2 (ENSPEMG00000016675) #33	Slc5a4a (ENSPEMG00000016494)	Slc5a4b (ENSPEMG00000018545)	Zfp280b (ENSPEMG00000023991)	Gm5134 (ENSPEMG00000017870)
Murinae	ANCESTRAL SPECIES	18	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000155183.e	ENSGT00940000161526.b	ENSGT00940000155183.f	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a.c #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054
Mus	ANCESTRAL SPECIES	15	ENSGT00940000161526.b.r.b.b	ENSGT00940000155183.e.c	ENSGT00940000155183.f.a	ENSGT00940000155183.e.d.a	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a.c #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000154360.A.b	ENSGT00940000155183.e.c.b.a	ENSGT00940000155183.e.c.b.b.a	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a.c #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00900000143399	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054
Mus_B	ANCESTRAL SPECIES	10	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a.c #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00900000143399	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000161526.b.r.b.a.a	ENSGT00940000161526.b.r.b.a.b.b	ENSGT00940000161526.b.r.a	ENSGT00940000155183.f.b.a	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a.c #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00900000143399	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531
Steppe mouse	MODERN SPECIES	2625										Adarb1 (ENSMSIG00000029150) #17	Pofut2 (ENSMSIG00000029155) #18	Col18a1 (ENSMSIG00000029164) #19	Slc19a1 (ENSMSIG00000029222) #20	ENSMSIG00000029230	Pcbp3 (ENSMSIG00000029232) #21	Col6a1 (ENSMSIG00000029284) #22	Col6a2 (ENSMSIG00000029309) #23	ENSMSIG00000029336
spretus	MODERN SPECIES	1	Gm10024 (MGP_SPRETEiJ_G0016302)	Gm10272 (MGP_SPRETEiJ_G0016301)	MGP_SPRETEiJ_G0016300	Ube2g2 (MGP_SPRETEiJ_G0016299) #11	Sumo3 (MGP_SPRETEiJ_G0016298) #12	Pttg1ip (MGP_SPRETEiJ_G0016297) #13	Itgb2 (MGP_SPRETEiJ_G0016296) #14	Fam207a (MGP_SPRETEiJ_G0016295) #16	Adarb1 (MGP_SPRETEiJ_G0016294) #17	Pofut2 (MGP_SPRETEiJ_G0016293) #18	MGP_SPRETEiJ_G0016292	Col18a1 (MGP_SPRETEiJ_G0016291) #19	Slc19a1 (MGP_SPRETEiJ_G0016290) #20	MGP_SPRETEiJ_G0016289	Pcbp3 (MGP_SPRETEiJ_G0016288) #21	Col6a1 (MGP_SPRETEiJ_G0016287) #22	Col6a2 (MGP_SPRETEiJ_G0016286) #23	Ftcd (MGP_SPRETEiJ_G0016285) #24	Spatc1l (MGP_SPRETEiJ_G0016284) #25	Lss (MGP_SPRETEiJ_G0016283) #26	Mcm3ap (MGP_SPRETEiJ_G0016282) #27	Ybey (MGP_SPRETEiJ_G0016281) #28	2610028H24Rik (MGP_SPRETEiJ_G0016280) #29	Pcnt (MGP_SPRETEiJ_G0016279) #30	MGP_SPRETEiJ_G0016278 #31	S100b (MGP_SPRETEiJ_G0016277) #32	Prmt2 (MGP_SPRETEiJ_G0016276) #33	Slc5a4a (MGP_SPRETEiJ_G0016275)	Slc5a4b (MGP_SPRETEiJ_G0016274)	Zfp280b (MGP_SPRETEiJ_G0016273)	Gm5134 (MGP_SPRETEiJ_G0016272)
Mouse	MODERN SPECIES	1	Gm10024 (ENSMUSG00000094012)	Gm10272 (ENSMUSG00000069584)	Gm9508 (ENSMUSG00000112170)	Gm19402 (ENSMUSG00000095970)	Tspear (ENSMUSG00000069581)	Ube2g2 (ENSMUSG00000009293) #11	Sumo3 (ENSMUSG00000020265) #12	Pttg1ip (ENSMUSG00000009291) #13	Itgb2 (ENSMUSG00000000290) #14	Fam207a (ENSMUSG00000032977) #16	Adarb1 (ENSMUSG00000020262) #17	Pofut2 (ENSMUSG00000020260) #18	Col18a1 (ENSMUSG00000001435) #19	Slc19a1 (ENSMUSG00000001436) #20	Pcbp3 (ENSMUSG00000001120) #21	Col6a1 (ENSMUSG00000001119) #22	Col6a2 (ENSMUSG00000020241) #23	Ftcd (ENSMUSG00000001155) #24	Spatc1l (ENSMUSG00000009115) #25	Lss (ENSMUSG00000033105) #26	Mcm3ap (ENSMUSG00000001150) #27	Ybey (ENSMUSG00000033126) #28	2610028H24Rik (ENSMUSG00000009114) #29	Gm56118 (ENSMUSG00000117965)	Pcnt (ENSMUSG00000001151) #30	Dip2a (ENSMUSG00000020231) #31	S100b (ENSMUSG00000033208) #32	Prmt2 (ENSMUSG00000020230) #33	Slc5a4a (ENSMUSG00000020229)	Slc5a4b (ENSMUSG00000020226)	Zfp280b (ENSMUSG00000049764)
Ryukyu mouse	MODERN SPECIES	1	Gm10142 (MGP_CAROLIEiJ_G0015489)	Gm10024 (MGP_CAROLIEiJ_G0015488)	Gm10272 (MGP_CAROLIEiJ_G0015487)	Ube2g2 (MGP_CAROLIEiJ_G0015486) #11	Sumo3 (MGP_CAROLIEiJ_G0015485) #12	Pttg1ip (MGP_CAROLIEiJ_G0015484) #13	Itgb2 (MGP_CAROLIEiJ_G0015483) #14	Fam207a (MGP_CAROLIEiJ_G0015482) #16	Adarb1 (MGP_CAROLIEiJ_G0015481) #17	Pofut2 (MGP_CAROLIEiJ_G0015480) #18	MGP_CAROLIEiJ_G0015479	Col18a1 (MGP_CAROLIEiJ_G0015478) #19	Slc19a1 (MGP_CAROLIEiJ_G0015477) #20	MGP_CAROLIEiJ_G0015476	Pcbp3 (MGP_CAROLIEiJ_G0015475) #21	Col6a1 (MGP_CAROLIEiJ_G0015474) #22	Col6a2 (MGP_CAROLIEiJ_G0015473) #23	Ftcd (MGP_CAROLIEiJ_G0015472) #24	Spatc1l (MGP_CAROLIEiJ_G0015471) #25	Lss (MGP_CAROLIEiJ_G0015470) #26	Mcm3ap (MGP_CAROLIEiJ_G0015469) #27	Ybey (MGP_CAROLIEiJ_G0015468) #28	2610028H24Rik (MGP_CAROLIEiJ_G0015467) #29	Pcnt (MGP_CAROLIEiJ_G0015466) #30	Dip2a (MGP_CAROLIEiJ_G0015465) #31	S100b (MGP_CAROLIEiJ_G0015464) #32	Prmt2 (MGP_CAROLIEiJ_G0015463) #33	Slc5a4a (MGP_CAROLIEiJ_G0015462)	Slc5a4b (MGP_CAROLIEiJ_G0015461)	Zfp280b (MGP_CAROLIEiJ_G0015460)	Gm5134 (MGP_CAROLIEiJ_G0015459)
Shrew mouse	MODERN SPECIES	22	MGP_PahariEiJ_G0030903	MGP_PahariEiJ_G0030902	Gm10272 (MGP_PahariEiJ_G0030901)	MGP_PahariEiJ_G0030900	Ube2g2 (MGP_PahariEiJ_G0030899) #11	Sumo3 (MGP_PahariEiJ_G0030898) #12	Pttg1ip (MGP_PahariEiJ_G0030897) #13	Itgb2 (MGP_PahariEiJ_G0030896) #14	Fam207a (MGP_PahariEiJ_G0030895) #16	Adarb1 (MGP_PahariEiJ_G0030894) #17	Pofut2 (MGP_PahariEiJ_G0030893) #18	Col18a1 (MGP_PahariEiJ_G0030892) #19	Slc19a1 (MGP_PahariEiJ_G0030891) #20	MGP_PahariEiJ_G0030890	Pcbp3 (MGP_PahariEiJ_G0030889) #21	Col6a1 (MGP_PahariEiJ_G0030888) #22	Col6a2 (MGP_PahariEiJ_G0030887) #23	Ftcd (MGP_PahariEiJ_G0030886) #24	Spatc1l (MGP_PahariEiJ_G0030885) #25	Lss (MGP_PahariEiJ_G0030884) #26	Mcm3ap (MGP_PahariEiJ_G0030883) #27	Ybey (MGP_PahariEiJ_G0030882) #28	2610028H24Rik (MGP_PahariEiJ_G0030881) #29	Pcnt (MGP_PahariEiJ_G0030880) #30	Dip2a (MGP_PahariEiJ_G0030879) #31	S100b (MGP_PahariEiJ_G0030878) #32	Prmt2 (MGP_PahariEiJ_G0030877) #33	Slc5a4a (MGP_PahariEiJ_G0030876)	Gm5134 (MGP_PahariEiJ_G0030875)	MGP_PahariEiJ_G0030874	Chchd10 (MGP_PahariEiJ_G0030873)
Rat	MODERN SPECIES	12	LOC690415 (ENSRNOG00000069553)	LOC687631 (ENSRNOG00000047532)	LOC686720 (ENSRNOG00000032530)	LOC103694398 (ENSRNOG00000046538)	LOC690478 (ENSRNOG00000043302)	Ube2g2 (ENSRNOG00000001222) #11	Pttg1ip (ENSRNOG00000001223) #13	Itgb2 (ENSRNOG00000001224) #14	Slx9 (ENSRNOG00000001225) #16	Nme2-ps1 (ENSRNOG00000001226)	Adarb1 (ENSRNOG00000001227) #17	Pofut2 (ENSRNOG00000001228) #18	Col18a1 (ENSRNOG00000001229) #19	Slc19a1 (ENSRNOG00000001232) #20	Pcbp3 (ENSRNOG00000001245) #21	Col6a1 (ENSRNOG00000001249) #22	Col6a2 (ENSRNOG00000001254) #23	Ftcd (ENSRNOG00000001261) #24	Spatc1l (ENSRNOG00000070409) #25	Lss (ENSRNOG00000054549) #26	Mcm3ap (ENSRNOG00000001272) #27	Ybey (ENSRNOG00000021365) #28	RGD1564149 (ENSRNOG00000012714) #29	Pcnt (ENSRNOG00000001276) #30	Dip2a (ENSRNOG00000043212) #31	S100b (ENSRNOG00000001295) #32	Prmt2 (ENSRNOG00000001297) #33	Slc5a4 (ENSRNOG00000049734)	Slc5a4b (ENSRNOG00000001298)	Zfp280b (ENSRNOG00000028441)	RGD1563815 (ENSRNOG00000029979)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1105			ENSNGAG00000018160	ENSNGAG00000022654	ENSNGAG00000022913	Ube2g2 (ENSNGAG00000002914) #11	Sumo3 (ENSNGAG00000009915) #12	Pttg1ip (ENSNGAG00000014261) #13	Itgb2 (ENSNGAG00000015702) #14	Fam207a (ENSNGAG00000020787) #16	Adarb1 (ENSNGAG00000021602) #17	Pofut2 (ENSNGAG00000016043) #18	Col18a1 (ENSNGAG00000019514) #19	ENSNGAG00000003477 #20	Pcbp3 (ENSNGAG00000005416) #21	Col6a1 (ENSNGAG00000010525) #22	Col6a2 (ENSNGAG00000013702) #23	Ftcd (ENSNGAG00000015978) #24	Spatc1l (ENSNGAG00000016890) #25	Lss (ENSNGAG00000018100) #26	Mcm3ap (ENSNGAG00000020806) #27	Ybey (ENSNGAG00000000949) #28	ENSNGAG00000001257 #29	Pcnt (ENSNGAG00000006451) #30	Dip2a (ENSNGAG00000014719) #31	S100b (ENSNGAG00000017093) #32	ENSNGAG00000017453 #33
Lesser Egyptian jerboa	MODERN SPECIES	170	Lrrc3 (ENSJJAG00000001845)	Tspear (ENSJJAG00000004036)	ENSJJAG00000007731	ENSJJAG00000009512	ENSJJAG00000009838	Ube2g2 (ENSJJAG00000010215) #11	Sumo3 (ENSJJAG00000011166) #12	Pttg1ip (ENSJJAG00000011874) #13	Itgb2 (ENSJJAG00000015668) #14	ENSJJAG00000016167 #16	Adarb1 (ENSJJAG00000016847) #17	Pofut2 (ENSJJAG00000017712) #18	Col18a1 (ENSJJAG00000018606) #19	Slc19a1 (ENSJJAG00000020575) #20	Pcbp3 (ENSJJAG00000021192) #21	Col6a1 (ENSJJAG00000021936) #22	Col6a2 (ENSJJAG00000023030) #23	Ftcd (ENSJJAG00000000888) #24	Spatc1l (ENSJJAG00000003377) #25	Lss (ENSJJAG00000008335) #26	Mcm3ap (ENSJJAG00000011921) #27	2610028H24Rik (ENSJJAG00000013433) #29
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00940000163845	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00940000163845	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Artiodactyla_a	ANCESTRAL SPECIES	8	ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Cetacea	ANCESTRAL SPECIES	10	ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00960000186612.A.p
Blue whale	MODERN SPECIES	15	LRRC3 (ENSBMSG00010007273)	TSPEAR (ENSBMSG00010007281)	ENSBMSG00010007295	ENSBMSG00010007310	ENSBMSG00010007332	UBE2G2 (ENSBMSG00010007343) #11	SUMO3 (ENSBMSG00010007354) #12	PTTG1IP (ENSBMSG00010007362) #13	ITGB2 (ENSBMSG00010007391) #14	SLX9 (ENSBMSG00010007433) #16	ADARB1 (ENSBMSG00010003764) #17	POFUT2 (ENSBMSG00010003795) #18	COL18A1 (ENSBMSG00010003836) #19	SLC19A1 (ENSBMSG00010003963) #20	PCBP3 (ENSBMSG00010003986) #21	COL6A1 (ENSBMSG00010004019) #22	COL6A2 (ENSBMSG00010004034) #23	FTCD (ENSBMSG00010004051) #24	LSS (ENSBMSG00010004134) #26	MCM3AP (ENSBMSG00010004232) #27	ENSBMSG00010004263 #28	ENSBMSG00010004286	DIP2A (ENSBMSG00010004306) #31	S100B (ENSBMSG00010004349) #32	PRMT2 (ENSBMSG00010004381) #33
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000163601	ENSGT00940000162768.B	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00960000186612.A.p
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162768.B	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00960000186612.A.p
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162768.B	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00960000186612.A.p
Vaquita	MODERN SPECIES	15	CFAP410 (ENSPSNG00000012160)	TRPM2 (ENSPSNG00000012233)	LRRC3 (ENSPSNG00000012828)	TSPEAR (ENSPSNG00000012864)	UBE2G2 (ENSPSNG00000013185) #11	SUMO3 (ENSPSNG00000013255) #12	PTTG1IP (ENSPSNG00000013293) #13	ENSPSNG00000013374 ##14	ENSPSNG00000013509	SLX9 (ENSPSNG00000013591) #16	ADARB1 (ENSPSNG00000013670) #17	POFUT2 (ENSPSNG00000013804) #18	COL18A1 (ENSPSNG00000013985) #19	SLC19A1 (ENSPSNG00000014338) #20	ENSPSNG00000014382	COL6A1 (ENSPSNG00000014616) #22	COL6A2 (ENSPSNG00000014738) #23	FTCD (ENSPSNG00000014870) #24	SPATC1L (ENSPSNG00000015232) #25	LSS (ENSPSNG00000015377) #26	MCM3AP (ENSPSNG00000015503) #27	ENSPSNG00000015602 #28	ENSPSNG00000015771	ENSPSNG00000015809 #30	ENSPSNG00000015929 #31	ENSPSNG00000016067 #31	S100B (ENSPSNG00000016108) #32	PRMT2 (ENSPSNG00000016182) #33	ENSPSNG00000016334
Pecora	ANCESTRAL SPECIES	8	ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00960000186612.A.p.a	ENSGT00390000004915.b	ENSGT00390000017888
Percora_a	ANCESTRAL SPECIES	7	ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b	ENSGT00390000017888
Bovidae	ANCESTRAL SPECIES	9	ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b	ENSGT00390000017888
Bovinae	ANCESTRAL SPECIES	6	ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b	ENSGT00390000017888
Bos	ANCESTRAL SPECIES	7	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000163441.f.a.b.c.a.b.a.b.a.b.a.b	ENSGT00940000163441.f.a.b.d	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b.f	ENSGT00390000017888
Bos_a	ANCESTRAL SPECIES	5	ENSGT00960000187239.a	ENSGT00940000161526.b.j.a	ENSGT00940000161526.b.i	ENSGT00960000187239.b	ENSGT00940000163441.f.a.b.c.a.b.a.a.a	ENSGT00940000163441.f.a.b.d	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b.e	ENSGT00390000017888
Wild yak	MODERN SPECIES	1401																COL6A1 (ENSBMUG00000019539) #22	COL6A2 (ENSBMUG00000019350) #23	FTCD (ENSBMUG00000019201) #24	SPATC1L (ENSBMUG00000019099) #25	LSS (ENSBMUG00000019069) #26	MCM3AP (ENSBMUG00000018534) #27	YBEY (ENSBMUG00000018009) #28	PCNT (ENSBMUG00000017747) #30	DIP2A (ENSBMUG00000017386) #31	S100B (ENSBMUG00000017272) #32	PRMT2 (ENSBMUG00000017225) #33	FBXO25 (ENSBMUG00000017147)	TDRP (ENSBMUG00000017069)	ENSBMUG00000017055
Domestic yak	MODERN SPECIES		ENSBGRG00000023608	ENSBGRG00000023634	ENSBGRG00000023648	ENSBGRG00000000167	ENSBGRG00000000176	UBE2G2 (ENSBGRG00000000181) #11	ENSBGRG00000000186 ##12	PTTG1IP (ENSBGRG00000000193) #13	ITGB2 (ENSBGRG00000000208) #14	SLX9 (ENSBGRG00000000257) #16	ADARB1 (ENSBGRG00000000280) #17	POFUT2 (ENSBGRG00000000326) #18	SLC19A1 (ENSBGRG00000000631) #20	ENSBGRG00000000644	PCBP3 (ENSBGRG00000000669) #21	COL6A1 (ENSBGRG00000000813) #22	COL6A2 (ENSBGRG00000000863) #23	FTCD (ENSBGRG00000000949) #24	SPATC1L (ENSBGRG00000001038) #25	LSS (ENSBGRG00000001100) #26	MCM3AP (ENSBGRG00000001560) #27	ENSBGRG00000001586 #28	ENSBGRG00000001632 #29	ENSBGRG00000001685	DIP2A (ENSBGRG00000001765) #31	S100B (ENSBGRG00000002365) #32	PRMT2 (ENSBGRG00000002397) #33	ENSBGRG00000002455	FBXO25 (ENSBGRG00000002483)	ENSBGRG00000002585	ENSBGRG00000002610
American bison	MODERN SPECIES	2975	ENSBBBG00000015104	ENSBBBG00000015117	ENSBBBG00000008155	TSPEAR (ENSBBBG00000015153)	UBE2G2 (ENSBBBG00000002782) #11	ENSBBBG00000015161 ##12	PTTG1IP (ENSBBBG00000015164) #13	ITGB2 (ENSBBBG00000003799) #14	SLX9 (ENSBBBG00000003802) #16	ADARB1 (ENSBBBG00000001357) #17	ENSBBBG00000001345 #18	ENSBBBG00000001334 #18	ENSBBBG00000001319 #19	SLC19A1 (ENSBBBG00000001312) #20	PCBP3 (ENSBBBG00000015403) #21	COL6A1 (ENSBBBG00000015494) #22	COL6A2 (ENSBBBG00000015610) #23	FTCD (ENSBBBG00000015621) #24	SPATC1L (ENSBBBG00000015631) #25	LSS (ENSBBBG00000002644) #26	MCM3AP (ENSBBBG00000015748) #27	YBEY (ENSBBBG00000015798) #28	ENSBBBG00000003968 #30	DIP2A (ENSBBBG00000016225) #31	S100B (ENSBBBG00000016247) #32	PRMT2 (ENSBBBG00000016343) #33	ENSBBBG00000016361	FBXO25 (ENSBBBG00000016404)	TDRP (ENSBBBG00000016413)	ENSBBBG00000016420	ENSBBBG00000016432
Yarkand deer	MODERN SPECIES	10	ENSCHYG00000012743	ENSCHYG00000012757	ENSCHYG00000012777	ENSCHYG00000012823	UBE2G2 (ENSCHYG00000013008) #11	ENSCHYG00000013089 ##12	ENSCHYG00000013199 #13	ITGB2 (ENSCHYG00000013305) #14	SLX9 (ENSCHYG00000013417) #16	ADARB1 (ENSCHYG00000013492) #17	POFUT2 (ENSCHYG00000013580) #18	ENSCHYG00000013809	SLC19A1 (ENSCHYG00000014939) #20	PCBP3 (ENSCHYG00000015231) #21	ENSCHYG00000015578	COL6A1 (ENSCHYG00000015735) #22	COL6A2 (ENSCHYG00000016288) #23	FTCD (ENSCHYG00000017995) #24	SPATC1L (ENSCHYG00000018089) #25	LSS (ENSCHYG00000018157) #26	MCM3AP (ENSCHYG00000018660) #27	YBEY (ENSCHYG00000019060) #28	PCNT (ENSCHYG00000019684) #30	DIP2A (ENSCHYG00000021088) #31	S100B (ENSCHYG00000022569) #32	PRMT2 (ENSCHYG00000022622) #33	ENSCHYG00000022791	FBXO25 (ENSCHYG00000022825)	TDRP (ENSCHYG00000022964)	ENSCHYG00000023002	ENSCHYG00000023032
Suina	ANCESTRAL SPECIES	35	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000163441.f.b.b	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22
Pig	MODERN SPECIES	4	ENSSSCG00000047876	ENSSSCG00000039836	ENSSSCG00000037222	ENSSSCG00000029038	ENSSSCG00000025793	UBE2G2 (ENSSSCG00000027165) #11	SUMO3 (ENSSSCG00000035795) #12	PTTG1IP (ENSSSCG00000031249) #13	ITGB2 (ENSSSCG00000025133) #14	SLX9 (ENSSSCG00000028571) #16	ADARB1 (ENSSSCG00000012089) #17	ENSSSCG00000012088 #18	COL18A1 (ENSSSCG00000038089) #19	ENSSSCG00000030696 #20	PCBP3 (ENSSSCG00000023041) #21	COL6A1 (ENSSSCG00000022506) #22
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00940000163845	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Carnivora	ANCESTRAL SPECIES	10	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000163441.f.a.a.b	ENSGT00940000163441.f.b.a.a	ENSGT00940000155183	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Caniformia	ANCESTRAL SPECIES		ENSGT00510000047718	ENSGT00940000163441.f.a.a.b	ENSGT00940000163441.f.b.a.a.b	ENSGT00940000163441.f.b.a.a.a	ENSGT00940000155183.a	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Mustelinae	ANCESTRAL SPECIES	67	ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
American mink	MODERN SPECIES	122	ENSNVIG00000007725	ENSNVIG00000007773	ENSNVIG00000007785	UBE2G2 (ENSNVIG00000007799) #11	SUMO3 (ENSNVIG00000007817) #12	PTTG1IP (ENSNVIG00000007848) #13	ITGB2 (ENSNVIG00000007863) #14	SLX9 (ENSNVIG00000008023) #16	ADARB1 (ENSNVIG00000008112) #17	ENSNVIG00000008191 #18	ENSNVIG00000008211 #18	ENSNVIG00000008220 #18	ENSNVIG00000008255 #19	ENSNVIG00000008290	PCBP3 (ENSNVIG00000008330) #21	COL6A1 (ENSNVIG00000008572) #22	ENSNVIG00000008753 #23	FTCD (ENSNVIG00000008760) #24	SPATC1L (ENSNVIG00000008811) #25	LSS (ENSNVIG00000008849) #26	MCM3AP (ENSNVIG00000008876) #27	YBEY (ENSNVIG00000008998) #28	ENSNVIG00000009125 #30	DIP2A (ENSNVIG00000009214) #31	S100B (ENSNVIG00000009347) #32	PRMT2 (ENSNVIG00000009362) #33
Ferret	MODERN SPECIES	506															ENSMPUG00000001779	COL6A1 (ENSMPUG00000001622) #22	ENSMPUG00000001618	ENSMPUG00000001614	COL6A2 (ENSMPUG00000001453) #23	FTCD (ENSMPUG00000001372) #24	SPATC1L (ENSMPUG00000001368) #25	LSS (ENSMPUG00000001364) #26	MCM3AP (ENSMPUG00000001353) #27	ENSMPUG00000001351 #29	PCNT (ENSMPUG00000001345) #30	DIP2A (ENSMPUG00000001339) #31	S100B (ENSMPUG00000001336) #32	PRMT2 (ENSMPUG00000001331) #33
Ursidae	ANCESTRAL SPECIES	1	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000163441.f.b.a.a.b	ENSGT00940000163441.f.b.a.a.a.c	ENSGT00940000161526.a.a	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Giant Panda	MODERN SPECIES		ENSAMEG00000029366	ENSAMEG00000028544	ENSAMEG00000031221	ENSAMEG00000028758	ENSAMEG00000002073 #11	ENSAMEG00000002071 ##12	ENSAMEG00000025067 #13	ITGB2 (ENSAMEG00000001924) #14	ENSAMEG00000001918 #16	ADARB1 (ENSAMEG00000001885) #17	ENSAMEG00000025761 #18	ENSAMEG00000001853 #18	COL18A1 (ENSAMEG00000001767) #19	SLC19A1 (ENSAMEG00000001754) #20	PCBP3 (ENSAMEG00000001697) #21	COL6A1 (ENSAMEG00000001581) #22	COL6A2 (ENSAMEG00000001501) #23	FTCD (ENSAMEG00000001451) #24	SPATC1L (ENSAMEG00000001442) #25	LSS (ENSAMEG00000001378) #26	MCM3AP (ENSAMEG00000001319) #27	YBEY (ENSAMEG00000001317) #28	DIP2A (ENSAMEG00000001136) #31	S100B (ENSAMEG00000001133) #32	ENSAMEG00000031399 #33	ENSAMEG00000025036 ##31	ENSAMEG00000027833	ENSAMEG00000005298
Canidae	ANCESTRAL SPECIES	39	ENSGT00940000159292	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a.i #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00960000186612.A
Canis_lupus	ANCESTRAL SPECIES	38	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000161526.a.d	ENSGT00940000161526.a.c	ENSGT00940000163441.f.a.a.b.a	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a.i #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00960000186612.A.h
Dog	MODERN SPECIES	24	TSPEAR (ENSCAFG00845020761)	ENSCAFG00845020843	ENSCAFG00845021000	ENSCAFG00845021169	ENSCAFG00845021222	UBE2G2 (ENSCAFG00845021306) #11	ENSCAFG00845021390 #12	PTTG1IP (ENSCAFG00845021456) #13	ITGB2 (ENSCAFG00845021592) #14	SLX9 (ENSCAFG00845021885) #16	ADARB1 (ENSCAFG00845021975) #17	POFUT2 (ENSCAFG00845022063) #18	COL18A1 (ENSCAFG00845022231) #19	ENSCAFG00845023388 #20	PCBP3 (ENSCAFG00845023560) #21	COL6A1 (ENSCAFG00845024031) #22	COL6A2 (ENSCAFG00845024255) #23	FTCD (ENSCAFG00845024727) #24	SPATC1L (ENSCAFG00845024849) #25	LSS (ENSCAFG00845024919) #26	MCM3AP (ENSCAFG00845025335) #27	ENSCAFG00845026433 #28	PCNT (ENSCAFG00845026638) #30	DIP2A (ENSCAFG00845027435) #31	ENSCAFG00845027798 #33
Felidae	ANCESTRAL SPECIES	9	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000163441.f.b.a.a.c	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Panthera	ANCESTRAL SPECIES	17	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000163441.f.b.a.a.c	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00960000191699	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
Panthera_a	ANCESTRAL SPECIES	71					ENSGT00940000163441.f.b.a.a.c	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00960000191699	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33	ENSGT00940000154486.b.a.a.b
leopard	MODERN SPECIES	167						ENSPPRG00000003469	UBE2G2 (ENSPPRG00000003006) #11	SUMO3 (ENSPPRG00000002862) #12	PTTG1IP (ENSPPRG00000001982) #13	ITGB2 (ENSPPRG00000001670) #14	SLX9 (ENSPPRG00000012813) #16	ADARB1 (ENSPPRG00000012281) #17	POFUT2 (ENSPPRG00000010612) #18	SLC19A1 (ENSPPRG00000004605) #20	PCBP3 (ENSPPRG00000003933) #21	COL6A1 (ENSPPRG00000000566) #22	COL6A2 (ENSPPRG00000024558) #23	FTCD (ENSPPRG00000011402) #24	SPATC1L (ENSPPRG00000008783) #25	LSS (ENSPPRG00000008675) #26	MCM3AP (ENSPPRG00000006018) #27	YBEY (ENSPPRG00000003325) #28	DIP2A (ENSPPRG00000023404) #31	S100B (ENSPPRG00000012850) #32	PRMT2 (ENSPPRG00000011758) #33
lion	MODERN SPECIES	82															ENSPLOG00000012660	COL6A1 (ENSPLOG00000012855) #22	COL6A2 (ENSPLOG00000013448) #23	FTCD (ENSPLOG00000013562) #24	SPATC1L (ENSPLOG00000013791) #25	LSS (ENSPLOG00000013929) #26	MCM3AP (ENSPLOG00000014376) #27	YBEY (ENSPLOG00000014501) #28	ENSPLOG00000014936	DIP2A (ENSPLOG00000015002) #31	S100B (ENSPLOG00000015114) #32	PRMT2 (ENSPLOG00000015178) #33	ENSPLOG00000015307
Cat	MODERN SPECIES	240	TRPM2 (ENSFCAG00000009173)	LRRC3 (ENSFCAG00000009174)	ENSFCAG00000037433	ENSFCAG00000034182	ENSFCAG00000046465	ENSFCAG00000037983	TSPEAR (ENSFCAG00000001772)	UBE2G2 (ENSFCAG00000042355) #11	ITGB2 (ENSFCAG00000002284) #14	SLX9 (ENSFCAG00000038348) #16	ADARB1 (ENSFCAG00000009665) #17	POFUT2 (ENSFCAG00000043455) #18	COL18A1 (ENSFCAG00000043124) #19	SLC19A1 (ENSFCAG00000026096) #20	PCBP3 (ENSFCAG00000014812) #21	COL6A1 (ENSFCAG00000014813) #22	COL6A2 (ENSFCAG00000014814) #23	FTCD (ENSFCAG00000014815) #24	SPATC1L (ENSFCAG00000014816) #25	LSS (ENSFCAG00000014817) #26	MCM3AP (ENSFCAG00000014818) #27	ENSFCAG00000032854 #28	CC2H21orf58 (ENSFCAG00000014819) #29	ENSFCAG00000052991	DIP2A (ENSFCAG00000014821) #31	S100B (ENSFCAG00000037747) #32	PRMT2 (ENSFCAG00000014823) #33	ENSFCAG00000050465
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00390000018807	ENSGT00940000156404	ENSGT00940000154360.A.b	ENSGT00940000163845	ENSGT00510000047718	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Equus	ANCESTRAL SPECIES	13	ENSGT00530000063721.A	ENSGT00940000161427	ENSGT00930000151026	ENSGT00730000110871.a.b ##30	ENSGT00530000063817.a	ENSGT00940000162584	ENSGT00940000157640	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Donkey	MODERN SPECIES	9	ENSEASG00005026028 #10	ENSEASG00005000235	UBE2G2 (ENSEASG00005037598) #11	ENSEASG00005025870 #12	PTTG1IP (ENSEASG00005034537) #13	ENSEASG00005036911 #14	ENSEASG00005018136 #14	ENSEASG00005020183 #14	ENSEASG00005032799 #14	SLX9 (ENSEASG00005023956) #16	ADARB1 (ENSEASG00005007085) #17	POFUT2 (ENSEASG00005007081) #18	COL18A1 (ENSEASG00005038430) #19	SLC19A1 (ENSEASG00005007070) #20	PCBP3 (ENSEASG00005007068) #21	COL6A1 (ENSEASG00005035660) #22	COL6A2 (ENSEASG00005007037) #23	FTCD (ENSEASG00005007018) #24	SPATC1L (ENSEASG00005007013) #25	LSS (ENSEASG00005006856) #26	ENSEASG00005006445 #28	MCM3AP (ENSEASG00005006458) #27	ENSEASG00005025745 #29	PCNT (ENSEASG00005006433) #30	DIP2A (ENSEASG00005002841) #31	S100B (ENSEASG00005028449) #32	ENSEASG00005002664 #33	ENSEASG00005012665	ENSEASG00005012661	SH2D4A (ENSEASG00005012656)	CSGALNACT1 (ENSEASG00005012653)
Horse	MODERN SPECIES	18	ENSECAG00000015117	ENSECAG00000047135	ENSECAG00000015092	ENSECAG00000049876	UBE2G2 (ENSECAG00000015327) #11	ENSECAG00000021271 #12	PTTG1IP (ENSECAG00000022770) #13	ITGB2 (ENSECAG00000023061) #14	SLX9 (ENSECAG00000016590) #16	ADARB1 (ENSECAG00000019917) #17	POFUT2 (ENSECAG00000004992) #18	COL18A1 (ENSECAG00000016361) #19	SLC19A1 (ENSECAG00000002116) #20	PCBP3 (ENSECAG00000012413) #21	ENSECAG00000047101	COL6A1 (ENSECAG00000022731) #22	COL6A2 (ENSECAG00000019436) #23	FTCD (ENSECAG00000011979) #24	SPATC1L (ENSECAG00000006870) #25	LSS (ENSECAG00000008899) #26	ENSECAG00000047281	MCM3AP (ENSECAG00000018980) #27	YBEY (ENSECAG00000019348) #28	ENSECAG00000049237 #29	PCNT (ENSECAG00000022455) #30	ENSECAG00000048453	DIP2A (ENSECAG00000052329) #31	S100B (ENSECAG00000012395) #32	PRMT2 (ENSECAG00000012406) #33
Chiroptera	ANCESTRAL SPECIES	35	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000163441.f.b.b	ENSGT00940000163441.f.a.a.b	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00960000191015	ENSGT00940000162768.B	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Microchiroptera	ANCESTRAL SPECIES	37	ENSGT00940000154360.A.b	ENSGT00510000047718	ENSGT00940000163441.f.b.b	ENSGT00940000163441.f.a.a.b	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.j #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00960000191015	ENSGT00940000162768.B	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32	ENSGT00940000160683 #33
Greater horseshoe bat	MODERN SPECIES	11	ENSRFEG00010001158	UBE2G2 (ENSRFEG00010001187) #11	SUMO3 (ENSRFEG00010001215) #12	PTTG1IP (ENSRFEG00010001246) #13	ITGB2 (ENSRFEG00010001275) #14	SLX9 (ENSRFEG00010001351) #16	ADARB1 (ENSRFEG00010001412) #17	ENSRFEG00010001456	ENSRFEG00010001475 #18	ENSRFEG00010001505 #18	ENSRFEG00010001539 #19	SLC19A1 (ENSRFEG00010001553) #20	ENSRFEG00010001565	ENSRFEG00010001580	ENSRFEG00010001629	COL6A1 (ENSRFEG00010001707) #22	COL6A2 (ENSRFEG00010001753) #23	ENSRFEG00010001831 #24	ENSRFEG00010001886 #25	MCM3AP (ENSRFEG00010001906) #27	YBEY (ENSRFEG00010001954) #28	LSS (ENSRFEG00010002001) #26	ENSRFEG00010002046 #25	ENSRFEG00010002070 #24	ENSRFEG00010002090 #29	ENSRFEG00010002127	DIP2A (ENSRFEG00010002401) #31	S100B (ENSRFEG00010002870) #32	PRMT2 (ENSRFEG00010002906) #33
Marsupialia	ANCESTRAL SPECIES	31	ENSGT00960000188864	ENSGT00940000163441	ENSGT00940000163258 #10	ENSGT00940000158193 #11	ENSGT00950000182895.a.b #12	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322.h #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000160683 #33	ENSGT00940000161997.a #32	ENSGT00390000009001	ENSGT00940000160270	ENSGT00940000159677.d	ENSGT00940000163820
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00510000047718	ENSGT00960000188864	ENSGT00940000163441	ENSGT00940000163258 #10	ENSGT00940000158193 #11	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162185 #21	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322.h #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000160683 #33	ENSGT00940000161997.a #32	ENSGT00390000009001	ENSGT00940000160270	ENSGT00940000159677.d	ENSGT00940000163820
Diprotodontia	ANCESTRAL SPECIES	73			ENSGT00950000183661.a.a.a	ENSGT00940000163441	ENSGT00940000163258 #10	ENSGT00940000158193 #11	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322.h #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000160683 #33	ENSGT00940000161997.a #32	ENSGT00390000009001	ENSGT00940000160270	ENSGT00940000159677.d	ENSGT00390000016151
Diprotodontia_a	ANCESTRAL SPECIES	70			ENSGT00950000183661.a.a.a.a.b	ENSGT00940000163441	ENSGT00940000163258 #10	ENSGT00940000158193 #11	ENSGT00390000004977 #13	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322.h #27	ENSGT00950000183170.b.b #28	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000160683 #33	ENSGT00940000161997.a #32	ENSGT00390000009001	ENSGT00940000160270	ENSGT00940000159677.d	ENSGT00390000016151
koala	MODERN SPECIES	242			ENSPCIG00000032220	ENSPCIG00000035860	ENSPCIG00000002804	ENSPCIG00000024198 #10	UBE2G2 (ENSPCIG00000032087) #11	PTTG1IP (ENSPCIG00000024195) #13	ITGB2 (ENSPCIG00000024190) #14	ENSPCIG00000024188 #16	ADARB1 (ENSPCIG00000024187) #17	POFUT2 (ENSPCIG00000024184) #18	COL18A1 (ENSPCIG00000037322) #19	SLC19A1 (ENSPCIG00000007128) #20	ENSPCIG00000028092	COL6A1 (ENSPCIG00000019516) #22	COL6A2 (ENSPCIG00000015214) #23	FTCD (ENSPCIG00000015206) #24	SPATC1L (ENSPCIG00000015203) #25	LSS (ENSPCIG00000015192) #26	MCM3AP (ENSPCIG00000015184) #27	YBEY (ENSPCIG00000015181) #28	ENSPCIG00000008757 #29	DIP2A (ENSPCIG00000008739) #31	PRMT2 (ENSPCIG00000008734) #33	ENSPCIG00000008733 #32	ENSPCIG00000008732	TRPM8 (ENSPCIG00000009198)	ENSPCIG00000008418	ENSPCIG00000032509	NDUFA10 (ENSPCIG00000020762)
Wallaby	MODERN SPECIES	4939																COL6A1 (ENSMEUG00000006921) #22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000027145	ENSSHAG00000021961	ENSSHAG00000026876	ENSSHAG00000024983	ENSSHAG00000026518	ENSSHAG00000004908	ENSSHAG00000029287	ENSSHAG00000001385	ENSSHAG00000027202 #13	ENSSHAG00000021176	ITGB2 (ENSSHAG00000026803) #14	ADARB1 (ENSSHAG00000031177) #17	POFUT2 (ENSSHAG00000005611) #18	COL18A1 (ENSSHAG00000000750) #19	PCBP3 (ENSSHAG00000007890) #21	COL6A1 (ENSSHAG00000008873) #22	ENSSHAG00000028129 #23	FTCD (ENSSHAG00000003460) #24	SPATC1L (ENSSHAG00000003976) #25	LSS (ENSSHAG00000004524) #26	ENSSHAG00000005045 #27	ENSSHAG00000023584 #29	ENSSHAG00000006209 #30	ENSSHAG00000007437 #31	ENSSHAG00000025431 #33	ENSSHAG00000025078 #32	ENSSHAG00000004807	ENSSHAG00000003180	ENSSHAG00000000317	UGT1A1 (ENSSHAG00000001438)	ENSSHAG00000004731
Sauria	ANCESTRAL SPECIES	71									ENSGT00940000167200	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162768.B	ENSGT00950000183546	ENSGT00940000163601	ENSGT01030000235116	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00520000055666.b #25	ENSGT00390000011570 #26	ENSGT00940000156322 #27	ENSGT00950000183170.b.b #28	ENSGT00390000007989 #18	ENSGT00940000155992 #17	ENSGT00390000015709 #16	ENSGT01090000259987.a.a.a #14	ENSGT00390000000747	ENSGT00390000011514 #29	ENSGT00730000110871.a.a.a.b #30	ENSGT00950000182997.a.b.b.a #31	ENSGT00940000161997.a #32
Archelosauria	ANCESTRAL SPECIES	57								ENSGT00940000167200	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162185 #21	ENSGT00940000162768.B	ENSGT00950000183546	ENSGT00940000163601	ENSGT01030000235116	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00390000011570 #26	ENSGT00940000161997.a #32	ENSGT01030000235951	ENSGT00950000182997.a.b.b.a #31	ENSGT00730000110871.a.a.a.b #30	ENSGT00390000011514 #29	ENSGT00390000000747	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00950000183170.b.b #28	ENSGT00940000156322 #27
Archosauria	ANCESTRAL SPECIES	61										ENSGT00940000167200	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT01030000235116	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00390000011570 #26	ENSGT00940000161997.a #32	ENSGT01030000235951	ENSGT00950000182997.a.b.b.a #31	ENSGT00730000110871.a.a.a.b #30	ENSGT00390000011514 #29	ENSGT00390000000747	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00950000183170.b.b #28	ENSGT00940000156322 #27
Aves	ANCESTRAL SPECIES																	ENSGT00940000162889 #22
Neognathae	ANCESTRAL SPECIES																	ENSGT00940000162889 #22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00940000162889 #22
Phasianidae	ANCESTRAL SPECIES	8	ENSGT00390000013151.a.a	ENSGT00940000159677.c.b.a.c.a.d	ENSGT00940000157267	ENSGT00720000108822	ENSGT00940000153969.b	ENSGT00940000165503	ENSGT00940000161996	ENSGT00940000157440	ENSGT00390000016151	ENSGT00940000154486.b.a.a.b	ENSGT00940000154486.b.b	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT01030000234722.a.a.b.b	ENSGT00940000156322 #27	ENSGT00390000007989 #18	ENSGT00940000164042.b.b.a	ENSGT00390000011570 #26	ENSGT00940000161997.a #32	ENSGT00950000182997.a.b.b.a #31	ENSGT00730000110871.a.a.a.b #30	ENSGT00390000011514 #29	ENSGT00390000000747	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT00390000013151.a.a	ENSGT00940000159677.c.b.a.c.a.d	ENSGT00940000157267	ENSGT00720000108822	ENSGT00940000153969.b	ENSGT00940000165503	ENSGT00940000161996	ENSGT00940000157440	ENSGT00390000016151	ENSGT00940000154486.b.a.a.b	ENSGT00940000154486.b.b	ENSGT00940000158212.B #19	ENSGT00950000183022.b #20	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT01030000234722.a.a.b.b	ENSGT00940000156322 #27	ENSGT00390000007989 #18	ENSGT00940000164042.b.b.a	ENSGT00390000011570 #26	ENSGT00940000161997.a #32	ENSGT00950000182997.a.b.b.a #31	ENSGT00730000110871.a.a.a.b #30	ENSGT00390000011514 #29	ENSGT00390000000747	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17
Chicken	MODERN SPECIES	36	ARL4C (ENSGALG00010012744)	SH3BP4 (ENSGALG00010010719)	UGT1A1 (ENSGALG00010011085)	USP40 (ENSGALG00010011106)	TRAF3IP1 (ENSGALG00010015025)	ASB1 (ENSGALG00010013494)	ENSGALG00010015254	TWIST2 (ENSGALG00010013612)	HDAC4 (ENSGALG00010013697)	NDUFA10 (ENSGALG00010013783)	AHR2 (ENSGALG00010013824)	AHR1B (ENSGALG00010014105)	COL18A1 (ENSGALG00010014162) #19	SLC19A1 (ENSGALG00010014180) #20	ENSGALG00010014258	COL6A1 (ENSGALG00010014310) #22	COL6A2 (ENSGALG00010014389) #23	FTCD (ENSGALG00010014540) #24	BlSK1 (ENSGALG00010014799)	ENSGALG00010013951	MCM3AP (ENSGALG00010010646) #27	POFUT2 (ENSGALG00010010689) #18	ENSGALG00010010628	LSS (ENSGALG00010013452) #26	S100B (ENSGALG00010013461) #32	DIP2A (ENSGALG00010010836) #31	ENSGALG00010010847	PCNT (ENSGALG00010014876) #30	C7H21orf58 (ENSGALG00010014952) #29	KMO (ENSGALG00010014963)	ITGB2 (ENSGALG00010014976) #14
Cryptodira	ANCESTRAL SPECIES	82												ENSGT00940000162768.B	ENSGT00950000183546	ENSGT00940000163601	ENSGT01030000235116	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000005581.a #24	ENSGT00390000011570 #26	ENSGT00940000161997.a #32	ENSGT01100000263521.b	ENSGT00950000182997.a.b.b.a #31	ENSGT00730000110871.a.a.a.b #30	ENSGT00390000011514 #29	ENSGT00390000000747	ENSGT01090000259987.a.a.a #14	ENSGT00390000015709 #16	ENSGT00940000155992 #17	ENSGT00390000007989 #18	ENSGT00950000183170.b.b #28	ENSGT00940000156322 #27
Chinese turtle	MODERN SPECIES	149															ENSPSIG00000014970	COL6A1 (ENSPSIG00000005874) #22	COL6A2 (ENSPSIG00000007815) #23	FTCD (ENSPSIG00000010472) #24
Actinopterygii	ANCESTRAL SPECIES	88												ENSGT00390000012014.A	ENSGT00390000008818	ENSGT00910000144277	ENSGT01030000235116	ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014398	ENSGT00550000074694.a	ENSGT00950000182893.a.a.a.a	ENSGT00390000011435	ENSGT00940000160768	ENSGT00940000153859.b	ENSGT00530000063156.b	ENSGT00950000182893.a.a.a.b	ENSGT00390000010337.B.a.b	ENSGT00950000182863.A.b	ENSGT00390000003305	ENSGT00390000001515
Neopterygii	ANCESTRAL SPECIES	559																ENSGT00940000162889 #22	ENSGT00940000155682 #23	ENSGT00390000018786
Osteoglossocephalai	ANCESTRAL SPECIES	885																ENSGT00940000162889 #22	ENSGT00940000155682.g.a #23
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	79	ENSGT00940000158193 #11	ENSGT00950000182895.a.b.u.b #12	ENSGT00950000182895.a.b.v #12	ENSGT00390000004977.d.a #13	ENSGT00940000164909.c	ENSGT00390000005911	ENSGT00390000014839.b	ENSGT00940000161051.a.a.a.a.b	ENSGT00390000011514 #29	ENSGT00940000155489.a	ENSGT00950000183009.eb	ENSGT00940000154913	ENSGT00940000163412	ENSGT00390000006618	ENSGT00940000158179	ENSGT00940000162889.a #22	ENSGT00940000155682.g.a #23	ENSGT00390000015276	ENSGT00940000156882	ENSGT00940000159292	ENSGT00940000158216	ENSGT00940000156404	ENSGT00390000018807	ENSGT00390000011295.a	ENSGT00390000010316	ENSGT00530000064199	ENSGT00950000182997.a.b.b.a #31	ENSGT01030000235951
Asian bonytongue	MODERN SPECIES	5	ube2g2 (ENSSFOG00015026166) #11	sumo3a (ENSSFOG00015007119) #12	ENSSFOG00015027566 #13	ENSSFOG00015007347	ANKZF1 (ENSSFOG00015007560)	atg9a (ENSSFOG00015007618)	ENSSFOG00015007680	zgc:112416 (ENSSFOG00015007698) #29	TRA2B (ENSSFOG00015007738)	igf2bp2b (ENSSFOG00015007770)	tmem41aa (ENSSFOG00015007825)	zgc:162707 (ENSSFOG00015031853)	ENSSFOG00015025008	marchf4l (ENSSFOG00015007863)	ENSSFOG00015025509	COL6A1 (ENSSFOG00015007912) #22	ENSSFOG00015024992	COL6A2 (ENSSFOG00015024641) #23	TMEM169 (ENSSFOG00015026041)	pecr (ENSSFOG00015008153)	pfklb (ENSSFOG00015008167)	MAP3K13 (ENSSFOG00015008255)	trpm2 (ENSSFOG00015008287)	CFAP410 (ENSSFOG00015008352)	hycc2 (ENSSFOG00015008403)	ndufb3 (ENSSFOG00015028173)	cflara (ENSSFOG00015008476)	ENSSFOG00015029618	DIP2A (ENSSFOG00015008508) #31	ENSSFOG00015008699	ENSSFOG00015008577
P. kingsleyae	MODERN SPECIES	35	TSPEAR (ENSPKIG00000009073)	ube2g2 (ENSPKIG00000009101) #11	sumo3b (ENSPKIG00000009126) #12	ENSPKIG00000009145 #13	ENSPKIG00000009236	ANKZF1 (ENSPKIG00000009427)	atg9a (ENSPKIG00000009492)	ENSPKIG00000009623	zgc:112416 (ENSPKIG00000009752) #29	ENSPKIG00000009766	TRA2B (ENSPKIG00000009810)	igf2bp2b (ENSPKIG00000009855)	tmem41aa (ENSPKIG00000009907)	zgc:162707 (ENSPKIG00000009919)	marchf4l (ENSPKIG00000009933)	COL6A1 (ENSPKIG00000009956) #22	COL6A2 (ENSPKIG00000010019) #23	TMEM169 (ENSPKIG00000010060)	pecr (ENSPKIG00000010071)	pfklb (ENSPKIG00000010110)	MAP3K13 (ENSPKIG00000010194)	trpm2 (ENSPKIG00000010256)	CFAP410 (ENSPKIG00000010319)	hycc2 (ENSPKIG00000010348)	ndufb3 (ENSPKIG00000010383)	cflara (ENSPKIG00000010416)	DIP2A (ENSPKIG00000010487) #31	ENSPKIG00000010555	ugt1b1 (ENSPKIG00000010577)	ugt1b1 (ENSPKIG00000010600)	NXPH2 (ENSPKIG00000010613)
Osteoglossiformes	ANCESTRAL SPECIES	413										ENSGT00950000183009.db.a	ENSGT00940000162528	ENSGT00940000157516	ENSGT00390000010672	ENSGT00940000164537	ENSGT00940000157608	ENSGT00940000162889.b #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00940000153239.A
Asian bonytongue	MODERN SPECIES	3	rbm45 (ENSSFOG00015012262)	ENSSFOG00015012296	agps (ENSSFOG00015012309)	mtx2 (ENSSFOG00015012353)	HOXD8 (ENSSFOG00015026967)	ENSSFOG00015012446	ENSSFOG00015029987	ENSSFOG00015012581	ENSSFOG00015012752	TRA2B (ENSSFOG00015013018)	tmem41ab (ENSSFOG00015032627)	ehhadh (ENSSFOG00015013128)	vps8 (ENSSFOG00015013264)	nme9 (ENSSFOG00015013368)	SMARCAL1 (ENSSFOG00015013429)	COL6A1 (ENSSFOG00015013459) #22	COL6A2 (ENSSFOG00015013569) #23	zgc:162816 (ENSSFOG00015013697)	xrcc5 (ENSSFOG00015013724)	ENSSFOG00015013761	PFKL (ENSSFOG00015013773)	ENSSFOG00015013824	prmt2 (ENSSFOG00015013865) #33	ENSSFOG00015013909	ENSSFOG00015027832	ENSSFOG00015032538	ENSSFOG00015014123	ENSSFOG00015014419	plekha3 (ENSSFOG00015014427)	fkbp7 (ENSSFOG00015027461)	PJVK (ENSSFOG00015014463)
Clupeocephala	ANCESTRAL SPECIES	508																ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807
Otomorpha	ANCESTRAL SPECIES	550																ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000011295.a.l.a	ENSGT00390000015228	ENSGT00390000018807
Clupeiformes	ANCESTRAL SPECIES	150		ENSGT00940000157308.h	ENSGT00530000063503.a.a.a	ENSGT00530000063558.A.c.b	ENSGT00940000159169	ENSGT00390000005596.a	ENSGT00940000158272.c.a	ENSGT00940000154317.b	ENSGT00940000171777	ENSGT00950000182852.A.a.b.c	ENSGT01090000260076.b.b.a	ENSGT00390000015719.d.c	ENSGT00940000162114	ENSGT00940000155850	ENSGT00390000003873	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000011295.a.l.a	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.a.a.a.a.b	ENSGT00940000156882	ENSGT00390000015276.h	ENSGT00530000064199.c	ENSGT00950000183019.f.b.b.d	ENSGT00940000164110	ENSGT00530000063410.b	ENSGT01030000234607.A.b	ENSGT00390000016929	ENSGT00940000155466.e.a
Denticle herring	MODERN SPECIES	15	ADGRG7 (ENSDCDG00000003389)	ENSDCDG00000003401	ENSDCDG00000003412	jagn1b (ENSDCDG00000003417)	ENSDCDG00000003424	ENSDCDG00000003433	FILIP1L (ENSDCDG00000003440)	il1rapl1b (ENSDCDG00000003487)	nr0b1 (ENSDCDG00000003506)	ENSDCDG00000003517	ENSDCDG00000003536	plekha3 (ENSDCDG00000003556)	TRAPPC10 (ENSDCDG00000003593)	tdo2b (ENSDCDG00000003776)	tdo2b (ENSDCDG00000003780)	COL6A1 (ENSDCDG00000003788) #22	COL6A2 (ENSDCDG00000013920) #23	zgc:162816 (ENSDCDG00000013971)	ENSDCDG00000014016	mrap2a (ENSDCDG00000014089)	ADARB1 (ENSDCDG00000014143) #17	slx9 (ENSDCDG00000014442) #16	abi2b (ENSDCDG00000014471)	itm2ba (ENSDCDG00000014548)	nudt15 (ENSDCDG00000014563)	sucla2 (ENSDCDG00000014586)	HTR2A (ENSDCDG00000014780)	ATP7B (ENSDCDG00000014839)	ENSDCDG00000015559	ENSDCDG00000015565	ENSDCDG00000015575
Atlantic herring	MODERN SPECIES	13	si:dkey-22o12.2 (ENSCHAG00000026201)	vps8 (ENSCHAG00000025988)	senp7b (ENSCHAG00000025967)	ENSCHAG00000025947	abi3bpb (ENSCHAG00000025900)	ADGRG7 (ENSCHAG00000025877)	jagn1b (ENSCHAG00000025872)	COL8A1 (ENSCHAG00000025869)	FILIP1L (ENSCHAG00000025866)	il1rapl1b (ENSCHAG00000025857)	nr0b1 (ENSCHAG00000025855)	ENSCHAG00000025780	plekha3 (ENSCHAG00000025752)	TRAPPC10 (ENSCHAG00000025593)	tdo2b (ENSCHAG00000025566)	COL6A1 (ENSCHAG00000025541) #22	ENSCHAG00000025533	COL6A2 (ENSCHAG00000025523) #23	zgc:162816 (ENSCHAG00000025509)	ENSCHAG00000025484	ORC2 (ENSCHAG00000025460)	ENSCHAG00000025426	pfklb (ENSCHAG00000020487)	zgc:171772 (ENSCHAG00000020336)	pecr (ENSCHAG00000020300)	tmem169a (ENSCHAG00000020298)	cflara (ENSCHAG00000020288)	PRKAG3 (ENSCHAG00000020132)	retreg2 (ENSCHAG00000020120)	ENSCHAG00000020080	mdh1b (ENSCHAG00000020010)
Otophysi	ANCESTRAL SPECIES	305	ENSGT00940000161734	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00940000158154	ENSGT00940000161593.b	ENSGT01030000234960	ENSGT00940000156442	ENSGT00390000018718	ENSGT00940000155941.A	ENSGT00940000162889 #22
Characiphysae	ANCESTRAL SPECIES	20																ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000011295.a.l.a	ENSGT00940000157767.m	ENSGT00900000143708	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000160532.h.a	ENSGT00940000153518.d.b.a.b	ENSGT00940000159262.d	ENSGT00940000155953.q.a	ENSGT00950000182883.b.b	ENSGT00940000165310	ENSGT00940000156972.d	ENSGT00730000111116
Channel catfish	MODERN SPECIES	1	kif14 (ENSIPUG00000008026)	Ddx59 (ENSIPUG00000008100)	Camsap2 (ENSIPUG00000008132)	wdr47b (ENSIPUG00000008284)	ENSIPUG00000008422	mcoln2 (ENSIPUG00000008458)	lpar3 (ENSIPUG00000008507)	ENSIPUG00000008512	SSX2IP (ENSIPUG00000008549)	xxylt1 (ENSIPUG00000008603)	FAM43A (ENSIPUG00000008624)	lsg1 (ENSIPUG00000008631)	tmem44 (ENSIPUG00000008699)	ATP13A3 (ENSIPUG00000008731)	tdo2b (ENSIPUG00000008810)	col6a1 (ENSIPUG00000008871) #22	col6a2 (ENSIPUG00000009066) #23	zgc:162816 (ENSIPUG00000009106)	Fam126b (ENSIPUG00000009141)	diaph3 (ENSIPUG00000009199)	pcdh17 (ENSIPUG00000009265)	Nkpd1 (ENSIPUG00000009293)	ENSIPUG00000009328	LIMS1 (ENSIPUG00000009395)	ENSIPUG00000009516	spoplb (ENSIPUG00000009698)	NXPH2 (ENSIPUG00000009723)	SLC4A10 (ENSIPUG00000009737)	TBR1 (ENSIPUG00000009859)	psmd14 (ENSIPUG00000010063)	RBMS1 (ENSIPUG00000010131)
Characiphysae_b	ANCESTRAL SPECIES	27																ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000011295.a.l.a	ENSGT00940000157767.m	ENSGT00900000143708	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000160532.h.a	ENSGT00940000154389.a	ENSGT00940000153518.d.b.a.b	ENSGT00940000159262.d	ENSGT00940000155953.q.a	ENSGT00950000182883.b.b	ENSGT00940000165310	ENSGT00940000156972.d
Characoidei	ANCESTRAL SPECIES	16																ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000011295.a.l.a	ENSGT00940000157767.m	ENSGT00900000143708	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000160532.h.a	ENSGT00940000154389.a	ENSGT00940000153518.d.b.a.b	ENSGT00940000159262.d	ENSGT00940000155953.q.a	ENSGT00950000182883.b.b	ENSGT00940000165310	ENSGT00940000156972.d
Red-bellied piranha	MODERN SPECIES	61	api5 (ENSPNAG00000015863)	ENSPNAG00000015804	TAFA5 (ENSPNAG00000015731)	tbl1xr1a (ENSPNAG00000015715)	ENSPNAG00000015688	ZMAT3 (ENSPNAG00000015664)	ENSPNAG00000015635	PIK3CA (ENSPNAG00000015621)	XXYLT1 (ENSPNAG00000015575)	fam43a (ENSPNAG00000015564)	ENSPNAG00000003396	lsg1 (ENSPNAG00000015533)	tmem44 (ENSPNAG00000015489)	ATP13A3 (ENSPNAG00000015470)	tdo2b (ENSPNAG00000015365)	COL6A1 (ENSPNAG00000003380) #22	COL6A2 (ENSPNAG00000015213) #23	zgc:162816 (ENSPNAG00000015195)	ENSPNAG00000015163	diaph3 (ENSPNAG00000015097)
Mexicana tetra	MODERN SPECIES	20	ENSAMXG00000040728	ENSAMXG00000039012	ENSAMXG00000031644	pcdh17 (ENSAMXG00000008422)	ENSAMXG00000042682	diaph3 (ENSAMXG00000043429)	ENSAMXG00000031943	XXYLT1 (ENSAMXG00000008290)	ENSAMXG00000036210	fam43a (ENSAMXG00000025901)	ENSAMXG00000031419	lsg1 (ENSAMXG00000008271)	tmem44 (ENSAMXG00000032549)	ATP13A3 (ENSAMXG00000036596)	tdo2b (ENSAMXG00000015199)	COL6A1 (ENSAMXG00000008158) #22	COL6A2 (ENSAMXG00000008110) #23	zgc:162816 (ENSAMXG00000008090)	ENSAMXG00000030405	si:ch211-284e20.8 (ENSAMXG00000032294)	ENSAMXG00000008063	ENSAMXG00000030621	si:ch211-262h13.5 (ENSAMXG00000008040)	anos1b (ENSAMXG00000008019)	senp5 (ENSAMXG00000042815)	ncbp2 (ENSAMXG00000041812)	PHKA2 (ENSAMXG00000007946)	ENSAMXG00000043252	ENSAMXG00000037582	b3gnt5a (ENSAMXG00000025900)	ect2 (ENSAMXG00000016621)
Electric eel	MODERN SPECIES	629									ENSEEEG00000011673	ENSEEEG00000011672	ENSEEEG00000011671	fam43a (ENSEEEG00000011670)	lsg1 (ENSEEEG00000011669)	tmem44 (ENSEEEG00000011668)	ATP13A3 (ENSEEEG00000011667)	COL6A1 (ENSEEEG00000011664) #22	COL6A2 (ENSEEEG00000011479) #23	zgc:162816 (ENSEEEG00000011476)	ENSEEEG00000011473	ENSEEEG00000011472
Cyprinoidei	ANCESTRAL SPECIES	27	ENSGT00940000157127.b	ENSGT00390000013132.b.a	ENSGT00940000166464	ENSGT00940000174829	ENSGT00940000154791	ENSGT00940000154089.a.c	ENSGT00950000182835.c.d.c.a	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00940000158154	ENSGT01030000234960	ENSGT00940000161593.b	ENSGT00940000156442	ENSGT00390000018718	ENSGT00940000155941.A	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00950000183118.A.c.a	ENSGT00950000182883.b.b	ENSGT00940000155953.q.a	ENSGT00940000159262.d	ENSGT00940000153518.d.b.a.b	ENSGT00940000153518.d.b.b	ENSGT00940000160532.h.a	ENSGT00650000093443	ENSGT00900000143708	ENSGT00940000156894.c	ENSGT00940000157767.m	ENSGT00390000011295.a.l.a	ENSGT00390000018786
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	61	ENSGT00940000155125.a.b.a	ENSGT00940000157127.b.b	ENSGT00390000013132.b.a.f	ENSGT00940000166464.a	ENSGT00940000174829	ENSGT00940000154089.a.c.b	ENSGT00950000182835.c.d.c.a.b	ENSGT00730000111202.d	ENSGT00940000155531.a.a.p	ENSGT00940000158154.b	ENSGT00940000161593.b.a	ENSGT00940000156442.d	ENSGT00390000018718.e	ENSGT00940000155941.A.i	ENSGT00390000008593.a.n	ENSGT00940000162889.c #22	ENSGT00940000155682.g.b.a #23	ENSGT00950000183118.A.c.a.o	ENSGT00950000182883.b.b.b	ENSGT00940000155953.q.a.b	ENSGT00940000159262.d.b	ENSGT00940000153518.d.b.a.b	ENSGT00940000160532.h.a.a	ENSGT00650000093443.e	ENSGT00940000156894.c.c	ENSGT00940000157767.m.a	ENSGT00390000011295.a.l.a.b	ENSGT00390000018786.a	ENSGT00940000155704.kb.b.a	ENSGT00940000157388.b.b.f	ENSGT01030000234638.b.a.a.`b
Goldfish	MODERN SPECIES	29	slc38a3a (ENSCARG00000020239)	chchd4a (ENSCARG00000020222)	ENSCARG00000020209	ENSCARG00000020203	mapkapk3 (ENSCARG00000019644)	pfkfb4a (ENSCARG00000015310)	ZMAT3 (ENSCARG00000015160)	PIK3CA (ENSCARG00000015120)	XXYLT1 (ENSCARG00000015106)	ENSCARG00000015101	fam43a (ENSCARG00000015094)	ENSCARG00000015067	tmem44 (ENSCARG00000015041)	ATP13A3 (ENSCARG00000014976)	tdo2b (ENSCARG00000014910)	COL6A1 (ENSCARG00000014899) #22	COL6A2 (ENSCARG00000014893) #23	PHKA2 (ENSCARG00000006503)	nxph2b (ENSCARG00000056704)	spoplb (ENSCARG00000056679)	ENSCARG00000056365	ENSCARG00000055744	ENSCARG00000055679	ENSCARG00000055656	ENSCARG00000055204	wdr83os (ENSCARG00000055179)	ENSCARG00000055072	tpcn3 (ENSCARG00000054615)	pgap4 (ENSCARG00000054568)	ENSCARG00000054554	slc8a1a (ENSCARG00000054275)
Cyprininae_a	ANCESTRAL SPECIES	3	ENSGT00940000155125.a.b.a	ENSGT00940000157127.b.b	ENSGT00390000013132.b.a.f	ENSGT00940000166464.a	ENSGT00940000174829	ENSGT00940000154089.a.c.b	ENSGT00950000182835.c.d.c.a.b	ENSGT00730000111202.d	ENSGT00940000155531.a.a.p	ENSGT00940000158154.b	ENSGT00940000161593.b.a	ENSGT00940000156442.d	ENSGT00390000018718.e	ENSGT00940000155941.A.i	ENSGT00390000008593.a.n	ENSGT00940000162889.c #22	ENSGT00940000155682.g.b.a #23	ENSGT00950000183118.A.c.a.o	ENSGT00950000182883.b.b.b	ENSGT00940000155953.q.a.b	ENSGT00940000159262.d.b	ENSGT00940000153518.d.b.a.b	ENSGT00940000160532.h.a.a	ENSGT00650000093443.e	ENSGT00940000156894.c.c	ENSGT00940000157767.m.a	ENSGT00390000011295.a.l.a.b	ENSGT00390000018786.a	ENSGT00940000155704.kb.b.a	ENSGT00940000157388.b.b.f	ENSGT01030000234638.b.a.a.`b
Common carp reference	MODERN SPECIES	42	inka1a (ENSCCRG00000058363)	gnai2a (ENSCCRG00000050816)	slc38a3a (ENSCCRG00000017772)	chchd4a (ENSCCRG00000073866)	ENSCCRG00000073157	ENSCCRG00000028910	mapkapk3 (ENSCCRG00000015875)	pfkfb4a (ENSCCRG00000075495)	ENSCCRG00000068271	ENSCCRG00000028889	XXYLT1 (ENSCCRG00000050451)	ENSCCRG00000011398	lsg1 (ENSCCRG00000011402)	tmem44 (ENSCCRG00000011411)	ATP13A3 (ENSCCRG00000003303)	ENSCCRG00000018328 #22	ENSCCRG00000029952 #23	ENSCCRG00000007727	spoplb (ENSCCRG00000047920)	ENSCCRG00000004805	ENSCCRG00000010674	ENSCCRG00000010718	ENSCCRG00000069052	ENSCCRG00000064524	ENSCCRG00000056695	pcdh17 (ENSCCRG00000077039)	diaph3 (ENSCCRG00000056522)	ENSCCRG00000017144	zgc:162816 (ENSCCRG00000040575)	ENSCCRG00000073810	sipa1l2 (ENSCCRG00000036925)
Golden-line barbel	MODERN SPECIES	432	slc38a3a (ENSSGRG00000045188)	chchd4a (ENSSGRG00000045198)	ENSSGRG00000045199	ENSSGRG00000045200	ENSSGRG00000045202	mapkapk3 (ENSSGRG00000045205)	pfkfb4a (ENSSGRG00000045247)	ZMAT3 (ENSSGRG00000045321)	PIK3CA (ENSSGRG00000045337)	XXYLT1 (ENSSGRG00000045572)	fam43a (ENSSGRG00000045573)	lsg1 (ENSSGRG00000045581)	tmem44 (ENSSGRG00000045633)	ATP13A3 (ENSSGRG00000045665)	tdo2b (ENSSGRG00000045990)	COL6A1 (ENSSGRG00000046025) #22	COL6A2 (ENSSGRG00000046026) #23	PHKA2 (ENSSGRG00000046085)	nxph2b (ENSSGRG00000048120)	spoplb (ENSSGRG00000048124)	ENSSGRG00000048262	ENSSGRG00000048266
Cyprininae	ANCESTRAL SPECIES	768															ENSGT00940000155941.A.j	ENSGT00940000162889.d #22	ENSGT00940000155682.g.b.b #23	ENSGT00950000183118.A.c.a.p	ENSGT00950000182883.b.b.a	ENSGT00940000155953.q.a.a	ENSGT00940000159262.d.a	ENSGT00940000153518.d.b.b	ENSGT00940000160532.h.a.b	ENSGT00650000093443.f
Goldfish	MODERN SPECIES	2	atp6ap1la (ENSCARG00000010185)	pde12 (ENSCARG00000010211)	ENSCARG00000010246	ninj1 (ENSCARG00000010352)	card19 (ENSCARG00000010358)	BICD2 (ENSCARG00000010372)	TKT (ENSCARG00000010398)	cacna1da (ENSCARG00000010622)	parapinopsinb (ENSCARG00000012504)	ENSCARG00000012514	diaph3 (ENSCARG00000012813)	pcdh17 (ENSCARG00000015817)	ENSCARG00000015819	ENSCARG00000015829	ATP13A3 (ENSCARG00000015898)	COL6A1 (ENSCARG00000017799) #22	COL6A2 (ENSCARG00000018086) #23	PHKA2 (ENSCARG00000021453)	nxph2b (ENSCARG00000022119)	spoplb (ENSCARG00000022125)	ENSCARG00000022195	ENSCARG00000022309	ENSCARG00000022567	ENSCARG00000022576	ENSCARG00000022583	ERC2 (ENSCARG00000022595)	BSN (ENSCARG00000022628)	hp1bp3 (ENSCARG00000022644)	sh2d5 (ENSCARG00000022685)	kif17 (ENSCARG00000022697)	zgc:158258 (ENSCARG00000022707)
Cyprininae_a	ANCESTRAL SPECIES	9	ENSGT00530000063849.A.a.f	ENSGT00940000155125.a.b.b	ENSGT00940000157127.b.a	ENSGT00390000013132.b.a.e	ENSGT00940000166464.b	ENSGT00940000154791	ENSGT00940000154089.a.c.a	ENSGT00950000182835.c.d.c.a.a	ENSGT00940000155531.a.a.o	ENSGT00940000158154.a	ENSGT01030000234960	ENSGT00940000161593.b.b	ENSGT00940000156442.c	ENSGT00390000018718.f	ENSGT00940000155941.A.j	ENSGT00940000162889.d #22	ENSGT00940000155682.g.b.b #23	ENSGT00950000183118.A.c.a.p	ENSGT00950000182883.b.b.a	ENSGT00940000155953.q.a.a	ENSGT00940000159262.d.a	ENSGT00940000153518.d.b.b	ENSGT00940000160532.h.a.b	ENSGT00650000093443.f	ENSGT00900000143708	ENSGT00940000156894.c.d	ENSGT00940000157767.m.b	ENSGT00390000011295.a.l.a.a	ENSGT00390000018786.b	ENSGT00940000155704.kb.b.b	ENSGT00940000157388.b.b.e
Golden-line barbel	MODERN SPECIES	2	ENSSGRG00000009281	ENSSGRG00000009280	ENSSGRG00000009279	ENSSGRG00000009277	ENSSGRG00000009275	mapkapk3 (ENSSGRG00000008939)	pfkfb4a (ENSSGRG00000008822)	PIK3CA (ENSSGRG00000008701)	XXYLT1 (ENSSGRG00000008700)	fam43a (ENSSGRG00000008699)	lsg1 (ENSSGRG00000008527)	tmem44 (ENSSGRG00000008521)	ATP13A3 (ENSSGRG00000008123)	tdo2b (ENSSGRG00000007937)	ENSSGRG00000007924	COL6A1 (ENSSGRG00000007920) #22	COL6A2 (ENSSGRG00000007490) #23	PHKA2 (ENSSGRG00000006532)	nxph2b (ENSSGRG00000006520)	spoplb (ENSSGRG00000006514)	ENSSGRG00000006513	lims1 (ENSSGRG00000005676)	ENSSGRG00000005665	ENSSGRG00000005664	ENSSGRG00000005659	pcdh17 (ENSSGRG00000005657)	ENSSGRG00000005653	diaph3 (ENSSGRG00000004955)	HYCC2 (ENSSGRG00000004391)	EGLN1 (ENSSGRG00000004337)	sipa1l2 (ENSSGRG00000004302)
Common carp reference	MODERN SPECIES	13	gnai2a (ENSCCRG00000061973)	slc38a3a (ENSCCRG00000080470)	chchd4a (ENSCCRG00000064388)	ENSCCRG00000077935	ENSCCRG00000003595	mapkapk3 (ENSCCRG00000028911)	pfkfb4a (ENSCCRG00000013593)	ENSCCRG00000070472	ENSCCRG00000004869	XXYLT1 (ENSCCRG00000014818)	ENSCCRG00000070136	fam43a (ENSCCRG00000070312)	lsg1 (ENSCCRG00000032407)	tmem44 (ENSCCRG00000049311)	ATP13A3 (ENSCCRG00000018309)	ENSCCRG00000056977 #22	ENSCCRG00000047938 #23	ENSCCRG00000024094	nxph2b (ENSCCRG00000047912)	spoplb (ENSCCRG00000041053)	ENSCCRG00000024614	lims1 (ENSCCRG00000005116)	ENSCCRG00000031824	ENSCCRG00000006354	ENSCCRG00000030022	pcdh17 (ENSCCRG00000056614)	ENSCCRG00000071839	ENSCCRG00000068354	diaph3 (ENSCCRG00000080371)	ENSCCRG00000040533	zgc:162816 (ENSCCRG00000037738)
Zebrafish	MODERN SPECIES	2	gnai2a (ENSDARG00000018174)	slc38a3a (ENSDARG00000027065)	chchd4a (ENSDARG00000033376)	ENSDARG00000061260	DNAH1 (ENSDARG00000100115)	mapkapk3 (ENSDARG00000111612)	pfkfb4a (ENSDARG00000055540)	ZMAT3 (ENSDARG00000080021)	PIK3CA (ENSDARG00000075456)	XXYLT1 (ENSDARG00000088799)	fam43a (ENSDARG00000043009)	lsg1 (ENSDARG00000015352)	tmem44 (ENSDARG00000068193)	ENSDARG00000076622	tdo2b (ENSDARG00000023176)	ENSDARG00000074908 #22	COL6A2 (ENSDARG00000061436) #23	PHKA2 (ENSDARG00000030687)	ENSDARG00000101271	nxph2b (ENSDARG00000079188)	spoplb (ENSDARG00000003974)	ENSDARG00000061497	lims1 (ENSDARG00000026985)	ENSDARG00000073802	ENSDARG00000075698	pcdh17 (ENSDARG00000027041)	ENSDARG00000113841	diaph3 (ENSDARG00000090785)	zgc:162816 (ENSDARG00000070416)	EGLN1 (ENSDARG00000105156)	egln1b (ENSDARG00000004632)
Euteleosteomorpha	ANCESTRAL SPECIES	315																ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.a.a.b	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00940000163427.d
Acanthomorphata	ANCESTRAL SPECIES	57	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT00940000156207.b.c.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00940000162889 #22	ENSGT01030000235116	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a
Cod	MODERN SPECIES	21	plcd1b (ENSGMOG00000002100)	oxsr1a (ENSGMOG00000002071)	ENSGMOG00000001724	ENSGMOG00000004580	ENSGMOG00000027708	ENSGMOG00000002060	ENSGMOG00000024600	ENSGMOG00000032861	CSRNP1 (ENSGMOG00000029051)	gorasp1a (ENSGMOG00000004430)	WDR48 (ENSGMOG00000004400)	ENSGMOG00000035026	SCN10A (ENSGMOG00000004332)	ENSGMOG00000029459	ENSGMOG00000033354	ENSGMOG00000032344 #22	ENSGMOG00000027364	ENSGMOG00000004197 #23	ENSGMOG00000004173	ENSGMOG00000004135	ENSGMOG00000004116	zgc:171772 (ENSGMOG00000031332)	ENSGMOG00000004088	ENSGMOG00000004078	ENSGMOG00000001881	ENSGMOG00000012635	mcm6 (ENSGMOG00000004027)	ENSGMOG00000030136	tmbim1a (ENSGMOG00000003982)	ENSGMOG00000024183	ENSGMOG00000008471
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT00940000156207.b.c.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00940000162889 #22	ENSGT01030000235116	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT01030000235116	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01100000263519.A.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT01100000263519.A.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01100000263519.A.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225
Anabantaria	ANCESTRAL SPECIES	8	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225
Zig-zag eel	MODERN SPECIES	8	ctdsplb (ENSMAMG00000016757)	plcd1b (ENSMAMG00000016794)	oxsr1a (ENSMAMG00000016817)	ENSMAMG00000016861	ENSMAMG00000016916	ENSMAMG00000016902	ENSMAMG00000016969	CSRNP1 (ENSMAMG00000016973)	gorasp1a (ENSMAMG00000016979)	WDR48 (ENSMAMG00000016995)	SCN10A (ENSMAMG00000017042)	ENSMAMG00000028043	ENSMAMG00000027278	ENSMAMG00000017107	ENSMAMG00000017115	ENSMAMG00000017127 #22	ENSMAMG00000017153 #23	ENSMAMG00000017206	ENSMAMG00000017247	ENSMAMG00000017254	RPL37A (ENSMAMG00000025523)	ENSMAMG00000017299	ENSMAMG00000017310	ENSMAMG00000025990	ENSMAMG00000017350	ENSMAMG00000017381	mcm6 (ENSMAMG00000017407)	ENSMAMG00000024961	tmbim1a (ENSMAMG00000017445)	ENSMAMG00000017473	ENSMAMG00000017490
Anabantoidei	ANCESTRAL SPECIES	18	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225
Siamese fighting fish	MODERN SPECIES	8	mrpl37 (ENSBSLG00000021024)	ACOT11 (ENSBSLG00000021214)	fam151a (ENSBSLG00000021706)	dnai4 (ENSBSLG00000021733)	ENSBSLG00000021773	xpr1b (ENSBSLG00000021918)	ttpa (ENSBSLG00000022360)	asph (ENSBSLG00000022467)	CSRNP1 (ENSBSLG00000022790)	gorasp1a (ENSBSLG00000022817)	wdr48b (ENSBSLG00000022879)	scn12aa (ENSBSLG00000023127)	ENSBSLG00000023826	ENSBSLG00000023842	ENSBSLG00000023867	COL6A1 (ENSBSLG00000023889) #22	COL6A2 (ENSBSLG00000023941) #23	ENSBSLG00000024029	ENSBSLG00000024040	ENSBSLG00000024042	ENSBSLG00000024045	ENSBSLG00000024049	ENSBSLG00000024051	ENSBSLG00000024053	ENSBSLG00000024056	ENSBSLG00000024057	ENSBSLG00000024058	ENSBSLG00000024059	ENSBSLG00000024062	ENSBSLG00000024064	zgc:162816 (ENSBSLG00000024069)
Climbing perch	MODERN SPECIES	8	ctdsplb (ENSATEG00000006635)	plcd1b (ENSATEG00000006558)	oxsr1a (ENSATEG00000006329)	ENSATEG00000006424	xirp1 (ENSATEG00000006360)	ENSATEG00000006184	ENSATEG00000029990	xirp1 (ENSATEG00000029308)	CSRNP1 (ENSATEG00000006172)	gorasp1a (ENSATEG00000006157)	WDR48 (ENSATEG00000006052)	SCN10A (ENSATEG00000005946)	ENSATEG00000028156	ENSATEG00000005936	ENSATEG00000027770	ENSATEG00000005497 #22	ENSATEG00000005475 #23	ENSATEG00000005444	ENSATEG00000005434	ENSATEG00000005382	zgc:171772 (ENSATEG00000026179)	ENSATEG00000005362	ENSATEG00000026294	ENSATEG00000004305	ENSATEG00000004834	ENSATEG00000004241	mcm6 (ENSATEG00000004164)	ENSATEG00000025336	tmbim1a (ENSATEG00000004076)	ENSATEG00000004046	ENSATEG00000003962
Carangaria	ANCESTRAL SPECIES	5	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b.c	ENSGT00940000154607.b.b.d	ENSGT00940000158377.b.i.b	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225
Turbot	MODERN SPECIES	19	ENSSMAG00000013848	klhl40a (ENSSMAG00000013751)	hhatla (ENSSMAG00000013692)	ctdsplb (ENSSMAG00000013641)	plcd1b (ENSSMAG00000013538)	oxsr1a (ENSSMAG00000013455)	ENSSMAG00000013341	ENSSMAG00000013327	CSRNP1 (ENSSMAG00000013318)	gorasp1a (ENSSMAG00000013296)	WDR48 (ENSSMAG00000013263)	SCN10A (ENSSMAG00000013220)	ENSSMAG00000030075	ENSSMAG00000025581	ENSSMAG00000013204	ENSSMAG00000013078 #22	ENSSMAG00000012981 #23	ENSSMAG00000012959	ENSSMAG00000012921	ENSSMAG00000024744	zgc:171772 (ENSSMAG00000012875)	ENSSMAG00000012806	ENSSMAG00000036173	ENSSMAG00000012795	ENSSMAG00000012773	mcm6 (ENSSMAG00000012730)	ENSSMAG00000012699	tmbim1a (ENSSMAG00000012690)	ENSSMAG00000012669	ENSSMAG00000012660	ENSSMAG00000012651
Tongue sole	MODERN SPECIES	12	ENSCSEG00000018865	ENSCSEG00000018871	ENSCSEG00000018879	tmbim1a (ENSCSEG00000018889)	ENSCSEG00000018895	mcm6 (ENSCSEG00000018899)	ENSCSEG00000018910	NDUFB3 (ENSCSEG00000008825)	pecr (ENSCSEG00000008830)	zgc:171772 (ENSCSEG00000008838)	CFAP410 (ENSCSEG00000008848)	ENSCSEG00000008857	ENSCSEG00000008869	zgc:162816 (ENSCSEG00000008880)	ENSCSEG00000008906	COL6A1 (ENSCSEG00000008939) #22	COL6A2 (ENSCSEG00000008970) #23	scn12aa (ENSCSEG00000009036)	wdr48b (ENSCSEG00000009078)	gorasp1a (ENSCSEG00000009096)	ENSCSEG00000009110	oxsr1a (ENSCSEG00000009121)	plcd1b (ENSCSEG00000009190)	ctdsplb (ENSCSEG00000009394)	hhatla (ENSCSEG00000009423)	klhl40a (ENSCSEG00000009445)	ENSCSEG00000009460	ENSCSEG00000009479	ENSCSEG00000009480	eif2b5 (ENSCSEG00000009494)	casq1a (ENSCSEG00000009578)
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225
Seriola	ANCESTRAL SPECIES		ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a.bb	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225
Greater amberjack	MODERN SPECIES	83	ctdsplb (ENSSDUG00000001114)	plcd1b (ENSSDUG00000001142)	oxsr1a (ENSSDUG00000001181)	ENSSDUG00000001206	ENSSDUG00000001235	ENSSDUG00000001266	LIMD2 (ENSSDUG00000001356)	xirp1 (ENSSDUG00000001373)	CSRNP1 (ENSSDUG00000001380)	gorasp1a (ENSSDUG00000001395)	wdr48b (ENSSDUG00000001411)	scn12aa (ENSSDUG00000001440)	ENSSDUG00000001563	ENSSDUG00000001571	ENSSDUG00000001579	COL6A1 (ENSSDUG00000001601) #22	COL6A2 (ENSSDUG00000001666) #23	zgc:162816 (ENSSDUG00000001729)	ENSSDUG00000001777	CFAP410 (ENSSDUG00000001849)	zgc:171772 (ENSSDUG00000001871)	pecr (ENSSDUG00000001914)	ENSSDUG00000002092	ndufb3 (ENSSDUG00000003670)	ENSSDUG00000003772	ENSSDUG00000004541	mcm6 (ENSSDUG00000004616)	si:ch73-71c20.5 (ENSSDUG00000004646)	ENSSDUG00000004661	ENSSDUG00000004716	catip (ENSSDUG00000004956)
Yellowtail amberjack	MODERN SPECIES	3040	ctdsplb (ENSSLDG00000002073)	plcd1b (ENSSLDG00000002146)	oxsr1a (ENSSLDG00000002594)	ENSSLDG00000002760	ENSSLDG00000003177	ENSSLDG00000003192	ENSSLDG00000003289	xirp1 (ENSSLDG00000003326)	CSRNP1 (ENSSLDG00000003389)	gorasp1a (ENSSLDG00000003404)	wdr48b (ENSSLDG00000003419)	scn12aa (ENSSLDG00000003505)	ENSSLDG00000003581	ENSSLDG00000003601	ENSSLDG00000003627	COL6A1 (ENSSLDG00000003661) #22	COL6A2 (ENSSLDG00000003892) #23	zgc:162816 (ENSSLDG00000003940)	ENSSLDG00000004011	ENSSLDG00000004107	zgc:171772 (ENSSLDG00000004137)	pecr (ENSSLDG00000004153)	ndufb3 (ENSSLDG00000004168)	ENSSLDG00000004228	ENSSLDG00000004266	mcm6 (ENSSLDG00000004301)	si:ch73-71c20.5 (ENSSLDG00000004439)	tmbim1a (ENSSLDG00000004383)	casp8 (ENSSLDG00000004467)	catip (ENSSLDG00000004538)	ENSSLDG00000004567
Barramundi perch	MODERN SPECIES	69	ctdsplb (ENSLCAG00010005829)	plcd1b (ENSLCAG00010005542)	oxsr1a (ENSLCAG00010005211)	ENSLCAG00010005139	ENSLCAG00010005135	ENSLCAG00010005129	ENSLCAG00010005125	ENSLCAG00010005120	CSRNP1 (ENSLCAG00010005117)	gorasp1a (ENSLCAG00010005112)	wdr48b (ENSLCAG00010005070)	ENSLCAG00010005046	scn12aa (ENSLCAG00010005031)	ENSLCAG00010004999	ENSLCAG00010004993	COL6A1 (ENSLCAG00010004981) #22	COL6A2 (ENSLCAG00010004372) #23	zgc:162816 (ENSLCAG00010004229)	ENSLCAG00010004223	ENSLCAG00010004220	zgc:171772 (ENSLCAG00010004217)	pecr (ENSLCAG00010004212)	ndufb3 (ENSLCAG00010004204)	ENSLCAG00010004198	ENSLCAG00010004193	mcm6 (ENSLCAG00010004114)	tmbim1a (ENSLCAG00010004084)	ENSLCAG00010004041	catip (ENSLCAG00010004011)	ENSLCAG00010004006	ENSLCAG00010004002
Eupercaria	ANCESTRAL SPECIES	22	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a
Tetraodontidae	ANCESTRAL SPECIES	13	ENSGT00940000167524	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225
Tetraodon	MODERN SPECIES	6	selenoj (ENSTNIG00000007929)	eif2b5 (ENSTNIG00000007928)	ENSTNIG00000007927	klhl40a (ENSTNIG00000007926)	hhatla (ENSTNIG00000007925)	ctdsplb (ENSTNIG00000007924)	plcd1b (ENSTNIG00000007923)	oxsr1a (ENSTNIG00000007922)	ENSTNIG00000007921	xirp1 (ENSTNIG00000007920)	CSRNP1 (ENSTNIG00000007919)	gorasp1a (ENSTNIG00000007918)	wdr48b (ENSTNIG00000007917)	scn12aa (ENSTNIG00000007916)	ENSTNIG00000001343	COL6A1 (ENSTNIG00000007915) #22	COL6A2 (ENSTNIG00000007914) #23	zgc:162816 (ENSTNIG00000007913)	ORC2 (ENSTNIG00000007912)	ENSTNIG00000007911	zgc:171772 (ENSTNIG00000007910)	pecr (ENSTNIG00000007909)	ndufb3 (ENSTNIG00000007908)	ENSTNIG00000007907	ENSTNIG00000007906	mcm6 (ENSTNIG00000007905)	si:ch73-71c20.5 (ENSTNIG00000007904)	tmbim1a (ENSTNIG00000007903)	ENSTNIG00000007902	ENSTNIG00000000751	PCDH8 (ENSTNIG00000007901)
Fugu	MODERN SPECIES	14	selenoj (ENSTRUG00000007784)	ENSTRUG00000031848	ENSTRUG00000033086	klhl40a (ENSTRUG00000008522)	hhatla (ENSTRUG00000027448)	ctdsplb (ENSTRUG00000008918)	plcd1b (ENSTRUG00000009158)	oxsr1a (ENSTRUG00000009412)	ENSTRUG00000026144	ENSTRUG00000027864	CSRNP1 (ENSTRUG00000006981)	gorasp1a (ENSTRUG00000006956)	wdr48b (ENSTRUG00000006525)	scn12aa (ENSTRUG00000005719)	ENSTRUG00000025717	COL6A1 (ENSTRUG00000005091) #22	COL6A2 (ENSTRUG00000004264) #23	zgc:162816 (ENSTRUG00000024619)	ENSTRUG00000003785	ENSTRUG00000031772	zgc:171772 (ENSTRUG00000003459)	pecr (ENSTRUG00000003174)	ndufb3 (ENSTRUG00000025720)	ENSTRUG00000025427	ENSTRUG00000010667	mcm6 (ENSTRUG00000010252)	ENSTRUG00000021265	tmbim1a (ENSTRUG00000010108)	ENSTRUG00000009742	ENSTRUG00000009662	ENSTRUG00000009617
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a
Ballan wrasse	MODERN SPECIES	10	ENSLBEG00000003332	ENSLBEG00000003356	ENSLBEG00000003381	ENSLBEG00000003414	CSRNP1 (ENSLBEG00000003436)	gorasp1a (ENSLBEG00000003456)	wdr48b (ENSLBEG00000003484)	ENSLBEG00000003551	scn12aa (ENSLBEG00000003585)	ENSLBEG00000003689	ENSLBEG00000003714	ENSLBEG00000003724	angptl6 (ENSLBEG00000003756)	ENSLBEG00000003817	ENSLBEG00000003845	COL6A1 (ENSLBEG00000003883) #22	COL6A2 (ENSLBEG00000003980) #23	zgc:162816 (ENSLBEG00000004144)	ENSLBEG00000004202	CFAP410 (ENSLBEG00000004239)	zgc:171772 (ENSLBEG00000004282)	pecr (ENSLBEG00000004318)	ndufb3 (ENSLBEG00000004336)	ENSLBEG00000004369	ENSLBEG00000004389	mcm6 (ENSLBEG00000004424)	ENSLBEG00000004475	tmbim1a (ENSLBEG00000004490)	ENSLBEG00000004518	catip (ENSLBEG00000004572)	ENSLBEG00000004605
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a
Perciformes	ANCESTRAL SPECIES	5	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a
Cottioidei	ANCESTRAL SPECIES	15	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a
Stickleback	MODERN SPECIES	2	catip (ENSGACG00000012847)	casp8 (ENSGACG00000012842)	ENSGACG00000012836	klhl40a (ENSGACG00000012831)	hhatla (ENSGACG00000012795)	ctdsplb (ENSGACG00000012774)	plcd1b (ENSGACG00000012708)	oxsr1a (ENSGACG00000012674)	ENSGACG00000012667	xirp1 (ENSGACG00000012663)	CSRNP1 (ENSGACG00000012661)	gorasp1a (ENSGACG00000012659)	wdr48b (ENSGACG00000012625)	scn12aa (ENSGACG00000012613)	ENSGACG00000012611	COL6A1 (ENSGACG00000012576) #22	COL6A2 (ENSGACG00000012518) #23	zgc:162816 (ENSGACG00000012508)	ENSGACG00000012499	CFAP410 (ENSGACG00000012486)	zgc:171772 (ENSGACG00000012484)	pecr (ENSGACG00000012451)	ndufb3 (ENSGACG00000012447)	ugt1b5 (ENSGACG00000012390)	ENSGACG00000012387	ENSGACG00000012386	mcm6 (ENSGACG00000012377)	si:ch73-71c20.5 (ENSGACG00000012375)	tmbim1a (ENSGACG00000012369)
Perciformes_a	ANCESTRAL SPECIES	24	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225
Pike perch	MODERN SPECIES	207	klhl40a (ENSSLUG00000013577)	hhatla (ENSSLUG00000013582)	ctdsplb (ENSSLUG00000013593)	plcd1b (ENSSLUG00000013645)	oxsr1a (ENSSLUG00000014539)	ENSSLUG00000014805	ENSSLUG00000014818	xirp1 (ENSSLUG00000014842)	CSRNP1 (ENSSLUG00000014848)	gorasp1a (ENSSLUG00000014854)	wdr48b (ENSSLUG00000014871)	scn12aa (ENSSLUG00000014941)	ENSSLUG00000002940	ENSSLUG00000002952	ENSSLUG00000002985	COL6A1 (ENSSLUG00000002999) #22	COL6A2 (ENSSLUG00000003127) #23	zgc:162816 (ENSSLUG00000003494)	ENSSLUG00000003504	ENSSLUG00000003566	ENSSLUG00000004098	zgc:171772 (ENSSLUG00000004219)	pecr (ENSSLUG00000004227)	ndufb3 (ENSSLUG00000004240)	ENSSLUG00000004303	ENSSLUG00000004843	ENSSLUG00000004889	mcm6 (ENSSLUG00000004893)	si:ch73-71c20.5 (ENSSLUG00000004905)	tmbim1a (ENSSLUG00000004916)	casp8 (ENSSLUG00000004946)
Channel bull blenny	MODERN SPECIES	8	hhatla (ENSCGOG00000008433)	ctdsplb (ENSCGOG00000008755)	plcd1b (ENSCGOG00000008911)	oxsr1a (ENSCGOG00000010042)	ENSCGOG00000010051	ENSCGOG00000010053	ENSCGOG00000010054	xirp1 (ENSCGOG00000010056)	CSRNP1 (ENSCGOG00000010058)	gorasp1a (ENSCGOG00000010063)	wdr48b (ENSCGOG00000010075)	scn12aa (ENSCGOG00000010653)	ENSCGOG00000011534	ENSCGOG00000011536	ENSCGOG00000011537	COL6A1 (ENSCGOG00000011545) #22	COL6A2 (ENSCGOG00000011581) #23	zgc:162816 (ENSCGOG00000011629)	ENSCGOG00000011645	ENSCGOG00000012027	zgc:171772 (ENSCGOG00000012030)	pecr (ENSCGOG00000012036)	ndufb3 (ENSCGOG00000012039)	ENSCGOG00000012043	ENSCGOG00000012138	mcm6 (ENSCGOG00000012197)	TMBIM1 (ENSCGOG00000013454)	casp8 (ENSCGOG00000013460)	catip (ENSCGOG00000013520)	ENSCGOG00000013523	ENSCGOG00000013528
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225
Gilthead seabream	MODERN SPECIES	13	plcd1b (ENSSAUG00010023597)	oxsr1a (ENSSAUG00010024030)	ENSSAUG00010024091	ENSSAUG00010024094	ENSSAUG00010024096	ENSSAUG00010024098	rpl36 (ENSSAUG00010024100)	ENSSAUG00010024101	CSRNP1 (ENSSAUG00010024102)	gorasp1a (ENSSAUG00010024103)	wdr48b (ENSSAUG00010024104)	scn12aa (ENSSAUG00010024161)	ENSSAUG00010025202	ENSSAUG00010025204	ENSSAUG00010025207	COL6A1 (ENSSAUG00010025210) #22	COL6A2 (ENSSAUG00010025268) #23	zgc:162816 (ENSSAUG00010025838)	ENSSAUG00010025841	ENSSAUG00010025844	zgc:171772 (ENSSAUG00010025846)	pecr (ENSSAUG00010025847)	NDUFB3 (ENSSAUG00010025848)	ENSSAUG00010025856	ENSSAUG00010002800	mcm6 (ENSSAUG00010002843)	tmbim1a (ENSSAUG00010002960)	ENSSAUG00010003126	catip (ENSSAUG00010003163)	ENSSAUG00010003169	ENSSAUG00010003175
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225
European seabass	MODERN SPECIES		plcd1b (ENSDLAG00005023072)	oxsr1a (ENSDLAG00005023345)	ENSDLAG00005023408	ENSDLAG00005023410	ENSDLAG00005023419	ENSDLAG00005026605	xirp1 (ENSDLAG00005030566)	CSRNP1 (ENSDLAG00005034486)	gorasp1a (ENSDLAG00005023436)	WDR48 (ENSDLAG00005023445)	SCN10A (ENSDLAG00005023531)	ENSDLAG00005023879	ENSDLAG00005034014	ENSDLAG00005023884	ENSDLAG00005023888	ENSDLAG00005033968 #22	ENSDLAG00005023911 #23	ENSDLAG00005024052	ENSDLAG00005024073	ENSDLAG00005029086	zgc:171772 (ENSDLAG00005024258)	ENSDLAG00005024261	ENSDLAG00005034460	ENSDLAG00005033709	ENSDLAG00005024273	ENSDLAG00005024278	ENSDLAG00005030522	ENSDLAG00005024300	ENSDLAG00005024364	ENSDLAG00005034463	ENSDLAG00005024370
Large yellow croaker	MODERN SPECIES	481	hhatla (ENSLCRG00005005351)	ctdsplb (ENSLCRG00005005284)	plcd1b (ENSLCRG00005002981)	oxsr1a (ENSLCRG00005000387)	ENSLCRG00005000263	ENSLCRG00005000256	LIMD2 (ENSLCRG00005000250)	xirp1 (ENSLCRG00005000239)	CSRNP1 (ENSLCRG00005022745)	gorasp1a (ENSLCRG00005022744)	wdr48b (ENSLCRG00005022729)	ENSLCRG00005022723	scn12aa (ENSLCRG00005016742)	ENSLCRG00005016652	ENSLCRG00005016651	COL6A1 (ENSLCRG00005016650) #22	COL6A2 (ENSLCRG00005013465) #23	zgc:162816 (ENSLCRG00005013426)	ENSLCRG00005013406	ENSLCRG00005013405	zgc:171772 (ENSLCRG00005013403)	pecr (ENSLCRG00005013401)	ndufb3 (ENSLCRG00005013397)	ENSLCRG00005013396	ENSLCRG00005013394	mcm6 (ENSLCRG00005013382)	ENSLCRG00005013379	tmbim1a (ENSLCRG00005013376)	ENSLCRG00005013373	ENSLCRG00005013372	ENSLCRG00005013371
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a
Aplocheiloidei	ANCESTRAL SPECIES	19	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00390000006290
Mangrove rivulus	MODERN SPECIES	55	hhatla (ENSKMAG00000019867)	ctdsplb (ENSKMAG00000019841)	plcd1b (ENSKMAG00000019811)	oxsr1a (ENSKMAG00000019745)	ENSKMAG00000019709	ENSKMAG00000019677	ENSKMAG00000019662	ENSKMAG00000019653	ENSKMAG00000019642	xirp1 (ENSKMAG00000019628)	CSRNP1 (ENSKMAG00000019611)	gorasp1a (ENSKMAG00000019595)	wdr48b (ENSKMAG00000019529)	scn12aa (ENSKMAG00000019452)	ENSKMAG00000019438	COL6A1 (ENSKMAG00000019369) #22	COL6A2 (ENSKMAG00000019310) #23	zgc:162816 (ENSKMAG00000019282)	ENSKMAG00000019234	CFAP410 (ENSKMAG00000019261)	zgc:171772 (ENSKMAG00000019215)
Turquoise killifish	MODERN SPECIES	1618	ENSNFUG00015009411	HHATLA (ENSNFUG00015009429)	ENSNFUG00015009494	CTDSPLB (ENSNFUG00015009502)	plcd1b (ENSNFUG00015009661)	ENSNFUG00015011380	ENSNFUG00015011393	ENSNFUG00015011411	ENSNFUG00015011420	CSRNP1A (ENSNFUG00015011432)	gorasp1a (ENSNFUG00015011436)	WDR48 (ENSNFUG00015011484)	scn12aa (ENSNFUG00015011887)	ENSNFUG00015012064	Nfu_g_1_020581 (ENSNFUG00015012068)	COL6A1 (ENSNFUG00015012075) #22	COL6A2 (ENSNFUG00015012096) #23	ENSNFUG00015012180	zgc:162816 (ENSNFUG00015012190)	ORC2 (ENSNFUG00015012213)	pecr (ENSNFUG00015012245)	zgc:171772 (ENSNFUG00015012259)	C21ORF2 (ENSNFUG00015012264)	ndufb3 (ENSNFUG00015012270)	ENSNFUG00015012284	CXCR4 (ENSNFUG00015012371)	mcm6 (ENSNFUG00015004708)	TMBIM1 (ENSNFUG00015005013)	OLA.3179 (ENSNFUG00015005103)	catip (ENSNFUG00015005115)	ENSNFUG00015005135
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT01100000264009	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a
NAME_4	ANCESTRAL SPECIES	9	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT01100000264009	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225
Mummichog	MODERN SPECIES	2251	ENSFHEG00000017979	klhl40a (ENSFHEG00000017994)	hhatla (ENSFHEG00000018067)	ctdsplb (ENSFHEG00000018093)	plcd1b (ENSFHEG00000018171)	oxsr1a (ENSFHEG00000018199)	ENSFHEG00000018328	LIMD2 (ENSFHEG00000018335)	xirp1 (ENSFHEG00000018340)	CSRNP1 (ENSFHEG00000018346)	gorasp1a (ENSFHEG00000018355)	wdr48b (ENSFHEG00000018394)	ENSFHEG00000018411	scn12aa (ENSFHEG00000018490)	ENSFHEG00000018494	COL6A1 (ENSFHEG00000018553) #22	COL6A2 (ENSFHEG00000000668) #23	zgc:162816 (ENSFHEG00000018612)	ENSFHEG00000018622	CFAP410 (ENSFHEG00000018630)	zgc:171772 (ENSFHEG00000018673)	pecr (ENSFHEG00000018684)	ndufb3 (ENSFHEG00000018689)	ENSFHEG00000018697	ENSFHEG00000018702	ENSFHEG00000018739	mcm6 (ENSFHEG00000018803)	ENSFHEG00000018809	tmbim1a (ENSFHEG00000018815)	ENSFHEG00000018828	catip (ENSFHEG00000018836)
Sheepshead minnow	MODERN SPECIES	776	klhl40a (ENSCVAG00000015100)	hhatla (ENSCVAG00000015137)	ctdsplb (ENSCVAG00000015171)	plcd1b (ENSCVAG00000015197)	oxsr1a (ENSCVAG00000015282)	ENSCVAG00000015326	ENSCVAG00000015334	ENSCVAG00000015340	xirp1 (ENSCVAG00000015343)	CSRNP1 (ENSCVAG00000015366)	gorasp1a (ENSCVAG00000015419)	wdr48b (ENSCVAG00000015450)	ENSCVAG00000015463	scn12aa (ENSCVAG00000015521)	ENSCVAG00000015531	COL6A1 (ENSCVAG00000015580) #22	COL6A2 (ENSCVAG00000015596) #23	zgc:162816 (ENSCVAG00000015618)	ENSCVAG00000015629	CFAP410 (ENSCVAG00000015637)	zgc:171772 (ENSCVAG00000015655)	pecr (ENSCVAG00000015679)
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT01100000264009	ENSGT00940000154992.a.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00670000098080	ENSGT00920000149161	ENSGT00940000158543	ENSGT00390000003140.A
Poecilia	ANCESTRAL SPECIES	19	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT01100000264009	ENSGT00940000154992.a.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00670000098080	ENSGT00920000149161	ENSGT00940000158543	ENSGT00390000003140.A
NAME_6	ANCESTRAL SPECIES	89	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b.a	ENSGT01050000244824.D.b.t	ENSGT01050000244848.C.b.b	ENSGT01050000244824.D.b.s	ENSGT00670000098080	ENSGT00920000149161
Amazon molly	MODERN SPECIES	301	klhl40a (ENSPFOG00000015929)	hhatla (ENSPFOG00000015895)	ctdsplb (ENSPFOG00000015849)	plcd1b (ENSPFOG00000015787)	oxsr1a (ENSPFOG00000015726)	ENSPFOG00000024333	ENSPFOG00000015637	ENSPFOG00000021933	LIMD2 (ENSPFOG00000015631)	xirp1 (ENSPFOG00000015628)	CSRNP1 (ENSPFOG00000015623)	gorasp1a (ENSPFOG00000015603)	wdr48b (ENSPFOG00000015559)	scn12aa (ENSPFOG00000015400)	ENSPFOG00000015385	COL6A1 (ENSPFOG00000015131) #22	ENSPFOG00000024796	COL6A2 (ENSPFOG00000014799) #23	zgc:162816 (ENSPFOG00000014753)	ENSPFOG00000014686	CFAP410 (ENSPFOG00000014666)	zgc:171772 (ENSPFOG00000014663)	pecr (ENSPFOG00000014634)	ndufb3 (ENSPFOG00000014627)	ENSPFOG00000014557	ENSPFOG00000024559	ENSPFOG00000014542	mcm6 (ENSPFOG00000014432)	ENSPFOG00000014406	mcm6 (ENSPFOG00000014294)	xrn1 (ENSPFOG00000013932)
Sailfin molly	MODERN SPECIES	1685													ENSPLAG00000021012	ENSPLAG00000021019	ENSPLAG00000021031	COL6A1 (ENSPLAG00000021111) #22	COL6A2 (ENSPLAG00000021129) #23	zgc:162816 (ENSPLAG00000021174)	ENSPLAG00000021186	CFAP410 (ENSPLAG00000021192)	zgc:171772 (ENSPLAG00000021196)	pecr (ENSPLAG00000021214)	ndufb3 (ENSPLAG00000021221)	ugt1b7 (ENSPLAG00000021706)
Guppy	MODERN SPECIES	447	klhl40a (ENSPREG00000021763)	hhatla (ENSPREG00000021742)	ctdsplb (ENSPREG00000021732)	plcd1b (ENSPREG00000021711)	oxsr1a (ENSPREG00000021697)	ENSPREG00000021687	ENSPREG00000021659	xirp1 (ENSPREG00000021646)	CSRNP1 (ENSPREG00000021642)	gorasp1a (ENSPREG00000021634)	wdr48b (ENSPREG00000021626)	ENSPREG00000021620	ENSPREG00000021612	scn12aa (ENSPREG00000021599)	ENSPREG00000021581	COL6A1 (ENSPREG00000021526) #22	ENSPREG00000021504	COL6A2 (ENSPREG00000021457) #23	zgc:162816 (ENSPREG00000021431)	ENSPREG00000021418	CFAP410 (ENSPREG00000021401)	zgc:171772 (ENSPREG00000021341)	pecr (ENSPREG00000021301)	ndufb3 (ENSPREG00000021292)	ugt1b7 (ENSPREG00000021283)	ENSPREG00000021266	mcm6 (ENSPREG00000021229)	xrn1 (ENSPREG00000021147)	cop1 (ENSPREG00000021094)	PAPPA2 (ENSPREG00000021060)	ASTN1 (ENSPREG00000021023)
Platyfish	MODERN SPECIES	20	hhatla (ENSXMAG00000000288)	ctdsplb (ENSXMAG00000000280)	plcd1b (ENSXMAG00000000230)	oxsr1a (ENSXMAG00000000211)	ENSXMAG00000000210	ENSXMAG00000000207	ENSXMAG00000029751	ENSXMAG00000025379	CSRNP1 (ENSXMAG00000029766)	gorasp1a (ENSXMAG00000014993)	wdr48b (ENSXMAG00000011491)	scn12aa (ENSXMAG00000011587)	ENSXMAG00000024849	ENSXMAG00000028203	ENSXMAG00000029973	COL6A1 (ENSXMAG00000011666) #22	COL6A2 (ENSXMAG00000011687) #23	zgc:162816 (ENSXMAG00000011762)	ENSXMAG00000011765	CFAP410 (ENSXMAG00000022437)	zgc:171772 (ENSXMAG00000022077)	pecr (ENSXMAG00000011806)	ndufb3 (ENSXMAG00000000694)	ENSXMAG00000018293	ENSXMAG00000018297	mcm6 (ENSXMAG00000018299)	xrn1 (ENSXMAG00000018320)	cop1 (ENSXMAG00000018345)	PAPPA2 (ENSXMAG00000018380)	ASTN1 (ENSXMAG00000018404)	brinp2 (ENSXMAG00000025244)
Oryzias	ANCESTRAL SPECIES	12	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000163996	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000163996	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a.n	ENSGT00940000159677.a.a.m	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591
Japanese Medaka HdrR	MODERN SPECIES	8	klhl40a (ENSORLG00000011926)	hhatla (ENSORLG00000011907)	ctdsplb (ENSORLG00000011888)	plcd1b (ENSORLG00000011876)	oxsr1a (ENSORLG00000011811)	ENSORLG00000011776	ENSORLG00000027777	ENSORLG00000011744	ENSORLG00000029173	xirp1 (ENSORLG00000011736)	CSRNP1 (ENSORLG00000011730)	gorasp1a (ENSORLG00000025545)	wdr48b (ENSORLG00000011723)	scn12aa (ENSORLG00000011677)	ENSORLG00000023292	COL6A1 (ENSORLG00000011639) #22	COL6A2 (ENSORLG00000011584) #23	zgc:162816 (ENSORLG00000011527)	CFAP410 (ENSORLG00000011489)	ENSORLG00000011520	zgc:171772 (ENSORLG00000011476)	dnai2b (ENSORLG00000011467)	pecr (ENSORLG00000011446)	ndufb3 (ENSORLG00000011424)	ENSORLG00000011416	ENSORLG00000011385	ENSORLG00000011337	mcm6 (ENSORLG00000011329)	ENSORLG00000011254	tmbim1a (ENSORLG00000011243)	casp8 (ENSORLG00000011198)
Chinese medaka	MODERN SPECIES	720										CSRNP1 (ENSOSIG00000008386)	gorasp1a (ENSOSIG00000008384)	wdr48b (ENSOSIG00000008360)	ENSOSIG00000008349	scn12aa (ENSOSIG00000008348)	ENSOSIG00000008345	COL6A1 (ENSOSIG00000008343) #22	COL6A2 (ENSOSIG00000008078) #23	zgc:162816 (ENSOSIG00000008071)	ENSOSIG00000008069	CFAP410 (ENSOSIG00000008067)	zgc:171772 (ENSOSIG00000008063)	ENSOSIG00000007951	pecr (ENSOSIG00000007947)	ENSOSIG00000007946	mcm6 (ENSOSIG00000007855)	ENSOSIG00000007839	ENSOSIG00000007836	casp20 (ENSOSIG00000007834)	ENSOSIG00000007832	ENSOSIG00000007828	ENSOSIG00000007760
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT00940000166630	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000163996	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a
Javanese ricefish	MODERN SPECIES	8	klhl40a (ENSOJAG00000004930)	hhatla (ENSOJAG00000004707)	ctdsplb (ENSOJAG00000004532)	plcd1b (ENSOJAG00000003892)	oxsr1a (ENSOJAG00000002839)	ENSOJAG00000002640	LIMD2 (ENSOJAG00000002619)	xirp1 (ENSOJAG00000002634)	CSRNP1 (ENSOJAG00000002609)	gorasp1a (ENSOJAG00000002597)	wdr48b (ENSOJAG00000002434)	ENSOJAG00000002390	scn12aa (ENSOJAG00000002053)	ENSOJAG00000001947	ENSOJAG00000015028	COL6A1 (ENSOJAG00000014695) #22	zgc:162816 (ENSOJAG00000014152)	ENSOJAG00000014032	CFAP410 (ENSOJAG00000014009)	zgc:171772 (ENSOJAG00000013981)	ENSOJAG00000013945	ndufb3 (ENSOJAG00000013922)	ENSOJAG00000013828	ENSOJAG00000013801	ENSOJAG00000013649	tmbim1a (ENSOJAG00000013614)	ENSOJAG00000013537	catip (ENSOJAG00000013515)	casp20 (ENSOJAG00000013504)	ENSOJAG00000013493	ENSOJAG00000013481
Indian medaka	MODERN SPECIES	10	ENSOMEG00000012443	klhl40a (ENSOMEG00000012349)	hhatla (ENSOMEG00000012297)	ctdsplb (ENSOMEG00000012204)	plcd1b (ENSOMEG00000012138)	oxsr1a (ENSOMEG00000012052)	ENSOMEG00000012010	ENSOMEG00000011989	xirp1 (ENSOMEG00000011971)	CSRNP1 (ENSOMEG00000011955)	gorasp1a (ENSOMEG00000011947)	wdr48b (ENSOMEG00000011918)	scn12aa (ENSOMEG00000011796)	ENSOMEG00000011773	ENSOMEG00000011763	COL6A1 (ENSOMEG00000011685) #22	COL6A2 (ENSOMEG00000011588) #23	zgc:162816 (ENSOMEG00000011546)	ENSOMEG00000011518	CFAP410 (ENSOMEG00000011451)	zgc:171772 (ENSOMEG00000011431)	ENSOMEG00000011410	pecr (ENSOMEG00000000269)	ENSOMEG00000011349	ndufb3 (ENSOMEG00000011326)	ENSOMEG00000011306	mcm6 (ENSOMEG00000011275)	ENSOMEG00000011181	tmbim1a (ENSOMEG00000011233)	ENSOMEG00000011171	ENSOMEG00000011143
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.d	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225
Pomacentridae_A	ANCESTRAL SPECIES	18											ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225.w
Amphiprion	ANCESTRAL SPECIES	33	ENSGT00940000159235	ENSGT00940000154815.b.b	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a.n.a	ENSGT00950000183075.a.a.a.a.m	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00390000008403	ENSGT00940000167655.k	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00940000154411	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225.w
Orange clownfish	MODERN SPECIES	1	oxsr1a (ENSAPEG00000020950)	ENSAPEG00000021031	ENSAPEG00000021160	ENSAPEG00000021191	ENSAPEG00000021222	LIMD2 (ENSAPEG00000021267)	ENSAPEG00000021283	xirp1 (ENSAPEG00000021293)	CSRNP1 (ENSAPEG00000021308)	gorasp1a (ENSAPEG00000021315)	wdr48b (ENSAPEG00000021361)	scn12aa (ENSAPEG00000021441)	ENSAPEG00000021534	ENSAPEG00000021545	ENSAPEG00000021562	COL6A1 (ENSAPEG00000021601) #22	ENSAPEG00000021652	COL6A2 (ENSAPEG00000021675) #23	zgc:162816 (ENSAPEG00000021787)	ENSAPEG00000021850	ENSAPEG00000021873	zgc:171772 (ENSAPEG00000021880)	pecr (ENSAPEG00000021896)	NDUFB3 (ENSAPEG00000021914)	ENSAPEG00000021908	ENSAPEG00000021921	mcm6 (ENSAPEG00000021954)	si:ch73-71c20.5 (ENSAPEG00000022027)	tmbim1a (ENSAPEG00000022032)	ENSAPEG00000022053	catip (ENSAPEG00000022095)
Clown anemonefish	MODERN SPECIES	1212												ENSAOCG00000009564	scn12aa (ENSAOCG00000009831)	ENSAOCG00000009885	ENSAOCG00000009891	COL6A1 (ENSAOCG00000009982) #22	COL6A2 (ENSAOCG00000010061) #23	zgc:162816 (ENSAOCG00000010099)	ENSAOCG00000010181	ENSAOCG00000010197	zgc:171772 (ENSAOCG00000010205)	pecr (ENSAOCG00000010212)	NDUFB3 (ENSAOCG00000010218)	ENSAOCG00000000636	ENSAOCG00000010245	mcm6 (ENSAOCG00000010301)	si:ch73-71c20.5 (ENSAOCG00000010315)	tmbim1a (ENSAOCG00000000645)
Spiny chromis	MODERN SPECIES	785						LIMD2 (ENSAPOG00000010698)	ENSAPOG00000010681	xirp1 (ENSAPOG00000010665)	CSRNP1 (ENSAPOG00000001046)	gorasp1a (ENSAPOG00000010640)	wdr48b (ENSAPOG00000010625)	scn12aa (ENSAPOG00000010561)	ENSAPOG00000010500	ENSAPOG00000010489	ENSAPOG00000010471	COL6A1 (ENSAPOG00000010460) #22	COL6A2 (ENSAPOG00000010321) #23	zgc:162816 (ENSAPOG00000010209)	ORC2 (ENSAPOG00000010148)	CFAP410 (ENSAPOG00000010129)	zgc:171772 (ENSAPOG00000010110)	pecr (ENSAPOG00000010096)	ndufb3 (ENSAPOG00000010052)	ENSAPOG00000010026	ENSAPOG00000009861	mcm6 (ENSAPOG00000009829)	si:ch73-71c20.5 (ENSAPOG00000009742)	ENSAPOG00000009732	tmbim1a (ENSAPOG00000009678)
Bicolor damselfish	MODERN SPECIES	798											wdr48b (ENSSPAG00000002976)	scn12aa (ENSSPAG00000003026)	ENSSPAG00000003091	ENSSPAG00000003101	ENSSPAG00000003120	COL6A1 (ENSSPAG00000003136) #22	COL6A2 (ENSSPAG00000003203) #23	zgc:162816 (ENSSPAG00000003248)	ENSSPAG00000003306	ENSSPAG00000003328	zgc:171772 (ENSSPAG00000003346)	pecr (ENSSPAG00000003362)	ndufb3 (ENSSPAG00000003377)	ENSSPAG00000003512	ENSSPAG00000006307	mcm6 (ENSSPAG00000006313)	tecrb (ENSSPAG00000006381)	dnajb1b (ENSSPAG00000006458)	ENSSPAG00000006486	ENSSPAG00000006501	ENSSPAG00000006511
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT00940000153582.a.n	ENSGT00940000162179.e.b.a.a.b	ENSGT01100000263519.A.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591.i	ENSGT00390000006290	ENSGT00940000177650
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT00940000153582.a.n	ENSGT01100000263519.A.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882.q	ENSGT00940000156882.r	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591.j.a	ENSGT00940000154101.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b.a.a	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT00940000153582.a.n	ENSGT01100000263519.A.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882.q	ENSGT00940000159677.a.a	ENSGT00940000156882.r	ENSGT00390000010316	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591.j.a	ENSGT00940000154101.a.e
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b.a.a	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT01100000263519.A.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882.q	ENSGT00940000159677.a.a	ENSGT00940000156882.r	ENSGT00390000010316	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055.c.a	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591.j.a	ENSGT00940000154101.a.e
Burton s mouthbrooder	MODERN SPECIES	429	klhl40a (ENSHBUG00000023487)	hhatla (ENSHBUG00000023449)	ctdsplb (ENSHBUG00000023363)	plcd1b (ENSHBUG00000023335)	oxsr1a (ENSHBUG00000023265)	ENSHBUG00000023165	ENSHBUG00000023128	ENSHBUG00000023045	CSRNP1 (ENSHBUG00000023036)	gorasp1a (ENSHBUG00000023027)	wdr48b (ENSHBUG00000023018)	scn12aa (ENSHBUG00000022942)	ENSHBUG00000022877	ENSHBUG00000022867	ENSHBUG00000022853	COL6A1 (ENSHBUG00000022833) #22	COL6A2 (ENSHBUG00000022632) #23	zgc:162816 (ENSHBUG00000022605)	ENSHBUG00000022578	CFAP410 (ENSHBUG00000022556)	zgc:171772 (ENSHBUG00000022542)
Haplochromini_A	ANCESTRAL SPECIES	48	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b.a.a	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT01100000263519.A.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882.q	ENSGT00940000159677.a.a.q	ENSGT00940000156882.r	ENSGT00390000010316	ENSGT00940000159677.a.a.r	ENSGT00940000155899.e.b.f	ENSGT00940000156209.v.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055.d
Haplochromini_B	ANCESTRAL SPECIES	52	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b.c.c.a	ENSGT00940000154607.b.b.c.c.b.a.a	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT01100000263519.A.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000018807	ENSGT00390000015228	ENSGT00390000016988.b	ENSGT00940000156882.q	ENSGT00940000159677.a.a.q	ENSGT00940000156882.r	ENSGT00390000010316	ENSGT00940000159677.a.a.r	ENSGT00940000155899.e.b.f	ENSGT00940000156209.v.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b	ENSGT00530000065055.d
Zebra mbuna	MODERN SPECIES	1100	hhatla (ENSMZEG00005011780)	ctdsplb (ENSMZEG00005011745)	plcd1b (ENSMZEG00005011706)	oxsr1a (ENSMZEG00005011662)	ENSMZEG00005011615	ENSMZEG00005011590	ENSMZEG00005011546	LIMD2 (ENSMZEG00005011525)	xirp1 (ENSMZEG00005011519)	CSRNP1 (ENSMZEG00005011512)	gorasp1a (ENSMZEG00005011497)	wdr48b (ENSMZEG00005011470)	scn12aa (ENSMZEG00005011449)	ENSMZEG00005011430	ENSMZEG00005011421	COL6A1 (ENSMZEG00005011386) #22	ENSMZEG00005011371	COL6A2 (ENSMZEG00005011331) #23	ENSMZEG00005011275	zgc:162816 (ENSMZEG00005011238)	CFAP410 (ENSMZEG00005011225)	ENSMZEG00005011216	zgc:171772 (ENSMZEG00005011203)	pecr (ENSMZEG00005011199)	ENSMZEG00005011194	pecr (ENSMZEG00005011186)	ndufb3 (ENSMZEG00005011181)	ENSMZEG00005011169	dnai4 (ENSMZEG00005011154)	ENSMZEG00005011138	mcm6 (ENSMZEG00005011109)
P. nyererei	MODERN SPECIES	393	hhatla (ENSPNYG00000017624)	ctdsplb (ENSPNYG00000017597)	plcd1b (ENSPNYG00000017564)	oxsr1a (ENSPNYG00000017485)	ENSPNYG00000017398	ENSPNYG00000017367	LIMD2 (ENSPNYG00000017354)	xirp1 (ENSPNYG00000017345)	CSRNP1 (ENSPNYG00000017336)	gorasp1a (ENSPNYG00000017323)	wdr48b (ENSPNYG00000017261)	ENSPNYG00000017250	scn12aa (ENSPNYG00000017194)	ENSPNYG00000017178	ENSPNYG00000017164	COL6A1 (ENSPNYG00000017103) #22	ENSPNYG00000017081	COL6A2 (ENSPNYG00000017040) #23	zgc:162816 (ENSPNYG00000016998)	ENSPNYG00000016961	CFAP410 (ENSPNYG00000016941)	zgc:171772 (ENSPNYG00000016933)	pecr (ENSPNYG00000016916)	ndufb3 (ENSPNYG00000016905)	ENSPNYG00000016881	dnai4 (ENSPNYG00000016758)	ENSPNYG00000016703	mcm6 (ENSPNYG00000016641)	si:ch73-71c20.5 (ENSPNYG00000016615)	tmbim1a (ENSPNYG00000016601)	ENSPNYG00000016559
Lyretail cichlid	MODERN SPECIES	385	plcd1b (ENSNBRG00000016846)	oxsr1a (ENSNBRG00000016742)	ENSNBRG00000016640	ENSNBRG00000016518	ENSNBRG00000016420	xirp1 (ENSNBRG00000016397)	CSRNP1 (ENSNBRG00000016389)	gorasp1a (ENSNBRG00000016373)	wdr48b (ENSNBRG00000016326)	ENSNBRG00000016299	ENSNBRG00000016285	scn12aa (ENSNBRG00000016232)	ENSNBRG00000016215	ENSNBRG00000016199	ENSNBRG00000016192	COL6A1 (ENSNBRG00000016134) #22	COL6A2 (ENSNBRG00000016081) #23	zgc:162816 (ENSNBRG00000016049)	ORC2 (ENSNBRG00000015996)	CFAP410 (ENSNBRG00000015978)	zgc:171772 (ENSNBRG00000015974)	pecr (ENSNBRG00000015935)	pecr (ENSNBRG00000015880)	ndufb3 (ENSNBRG00000015867)	ENSNBRG00000015856	dnai4 (ENSNBRG00000015805)	mcm6 (ENSNBRG00000015764)	si:ch73-71c20.5 (ENSNBRG00000015752)	tmbim1a (ENSNBRG00000015690)	ENSNBRG00000015572	catip (ENSNBRG00000015541)
Nile tilapia	MODERN SPECIES	9	ctdsplb (ENSONIG00000015609)	plcd1b (ENSONIG00000015610)	oxsr1a (ENSONIG00000015613)	ENSONIG00000015619	ENSONIG00000041634	ENSONIG00000034534	ENSONIG00000034673	xirp1 (ENSONIG00000015621)	CSRNP1 (ENSONIG00000015623)	gorasp1a (ENSONIG00000015625)	wdr48b (ENSONIG00000015628)	scn12aa (ENSONIG00000015630)	ENSONIG00000030484	ENSONIG00000042464	ENSONIG00000041590	COL6A1 (ENSONIG00000015644) #22	ENSONIG00000040009	COL6A2 (ENSONIG00000015650) #23	zgc:162816 (ENSONIG00000034736)	ENSONIG00000015654	ENSONIG00000032347	cfap410 (ENSONIG00000040731)	zgc:171772 (ENSONIG00000033651)	pecr (ENSONIG00000035602)	ENSONIG00000015663	ndufb3 (ENSONIG00000031322)	ENSONIG00000042403	ENSONIG00000015664	mcm6 (ENSONIG00000015669)	ENSONIG00000040121	tmbim1a (ENSONIG00000015676)
Midas cichlid	MODERN SPECIES	733	pgap6 (ENSACIG00000011173)	rgs11 (ENSACIG00000011134)	ints15 (ENSACIG00000011111)	ENSACIG00000011103	tfr1a (ENSACIG00000011065)	tfr1a (ENSACIG00000010981)	ENSACIG00000010959	xirp1 (ENSACIG00000010945)	CSRNP1 (ENSACIG00000010903)	gorasp1a (ENSACIG00000010870)	wdr48b (ENSACIG00000010825)	ENSACIG00000010815	scn12aa (ENSACIG00000010766)	ENSACIG00000010752	ENSACIG00000010739	COL6A1 (ENSACIG00000010609) #22	COL6A2 (ENSACIG00000010522) #23	zgc:162816 (ENSACIG00000010483)	ENSACIG00000010403	CFAP410 (ENSACIG00000010322)	zgc:171772 (ENSACIG00000010196)	pecr (ENSACIG00000010130)	ndufb3 (ENSACIG00000010119)	ENSACIG00000008543	ENSACIG00000008421	mcm6 (ENSACIG00000008382)	si:ch73-71c20.5 (ENSACIG00000008367)	tmbim1a (ENSACIG00000008344)	ENSACIG00000008140	catip (ENSACIG00000008018)	ENSACIG00000007935
Tiger tail seahorse	MODERN SPECIES	110	hhatla (ENSHCOG00000015876)	klhl40a (ENSHCOG00000015837)	ENSHCOG00000015828	ENSHCOG00000015688	eif2b5 (ENSHCOG00000015732)	ENSHCOG00000015681	ENSHCOG00000015603	ENSHCOG00000015578	LIMD2 (ENSHCOG00000015469)	CSRNP1 (ENSHCOG00000015437)	gorasp1a (ENSHCOG00000015407)	wdr48b (ENSHCOG00000015401)	scn12aa (ENSHCOG00000015345)	ENSHCOG00000015291	ENSHCOG00000015281	COL6A1 (ENSHCOG00000015262) #22	ENSHCOG00000014992	COL6A2 (ENSHCOG00000014976) #23	zgc:162816 (ENSHCOG00000014956)	ENSHCOG00000014912	ENSHCOG00000014904	zgc:171772 (ENSHCOG00000014876)	pecr (ENSHCOG00000014869)	ENSHCOG00000014863	ugt1b7 (ENSHCOG00000014793)	ENSHCOG00000012293	mcm6 (ENSHCOG00000012261)
Pinecone sodierfish	MODERN SPECIES	8	hhatla (ENSMMDG00005019235)	ctdsplb (ENSMMDG00005019226)	plcd1b (ENSMMDG00005019224)	plcd1b (ENSMMDG00005017096)	oxsr1a (ENSMMDG00005016901)	ENSMMDG00005016889	ENSMMDG00005016886	LIMD2 (ENSMMDG00005016885)	xirp1 (ENSMMDG00005016881)	CSRNP1 (ENSMMDG00005016879)	gorasp1a (ENSMMDG00005016875)	wdr48b (ENSMMDG00005015406)	scn12aa (ENSMMDG00005015383)	ENSMMDG00005015379	ENSMMDG00005015376	COL6A1 (ENSMMDG00005015371) #22	COL6A2 (ENSMMDG00005015369) #23	zgc:162816 (ENSMMDG00005015366)	ENSMMDG00005015043	CFAP410 (ENSMMDG00005015027)	zgc:171772 (ENSMMDG00005015025)	pecr (ENSMMDG00005015011)	ndufb3 (ENSMMDG00005015005)	ENSMMDG00005013411	ENSMMDG00005012849	ENSMMDG00005012829	mcm6 (ENSMMDG00005012777)	si:ch73-71c20.5 (ENSMMDG00005012769)	tmbim1a (ENSMMDG00005011981)	casp8 (ENSMMDG00005011972)	catip (ENSMMDG00005011969)
Protacanthopterygii	ANCESTRAL SPECIES	32	ENSGT00940000158429	ENSGT00390000012433.b	ENSGT00940000159923	ENSGT00940000160852	ENSGT00940000164586.h	ENSGT00940000159218.a	ENSGT00390000014590	ENSGT00520000060044	ENSGT00390000010157.a	ENSGT00390000006876	ENSGT00940000156470.v.a	ENSGT00390000005318.a.a.b	ENSGT00390000003574.b	ENSGT00940000154149.b.a.g.a	ENSGT00940000154499	ENSGT00940000162889 #22	ENSGT00940000155682.g.b #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.a.a.b	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00940000163427.d	ENSGT00390000004859.c.b	ENSGT00940000160141.e.a	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b	ENSGT00940000157362.c	ENSGT00940000154044.a.a.q.b
Salmoninae	ANCESTRAL SPECIES	1106																ENSGT00940000162889 #22	ENSGT00940000155682.g.b.d #23	ENSGT00390000018807	ENSGT00390000016988.a.a.b
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00390000009595.a	ENSGT00940000154290.a.e.d	ENSGT00940000154296.b.a.c.b	ENSGT00530000063273.a	ENSGT00390000003420.a.b.b	ENSGT00390000018077	ENSGT00390000012433.b.a	ENSGT00980000198608	ENSGT00940000164586.h	ENSGT00940000154882.b	ENSGT00940000170376.b	ENSGT00940000156207.b.c.a.b.a.a.b	ENSGT00390000006876	ENSGT00940000156470.u.b.c	ENSGT00940000154499.hb	ENSGT00940000162889.e #22	ENSGT00940000155682.g.b.d #23	ENSGT00390000018807	ENSGT00390000016988.a.a.a.a.b	ENSGT00390000004859.c.b	ENSGT00940000160141.e.a	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b	ENSGT00940000157362.c	ENSGT00940000154044.a.a.q.b	ENSGT01090000260052.a.a.a.a	ENSGT00940000155331.A.f	ENSGT00940000156146.`b.b	ENSGT00940000178871.b	ENSGT00940000154242.b.g	ENSGT00940000155121	ENSGT00390000003289.m.b
Salmo	ANCESTRAL SPECIES	5	ENSGT00940000156826.d.b	ENSGT00940000160043.e.a.a	ENSGT00940000157311.m	ENSGT00390000005307.s.c	ENSGT00940000179359.a.b.b.a	ENSGT00940000155917	ENSGT00940000157634.d.g	ENSGT00390000018077	ENSGT00390000012433.b.a	ENSGT00980000198608	ENSGT00940000164586.h	ENSGT00940000156207.b.c.a.b.a.a.b	ENSGT00390000006876	ENSGT00940000156470.u.b.c	ENSGT00940000154499.hb.a	ENSGT00940000162889.e #22	ENSGT00940000155682.g.b.d #23	ENSGT00390000018807	ENSGT00390000016988.a.a.a.a.b	ENSGT00390000004859.c.a	ENSGT00390000004859.c.b	ENSGT00940000160141.e.a	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b	ENSGT00940000157362.c	ENSGT00940000154044.a.a.q.b	ENSGT01090000260052.a.a.a.a.w	ENSGT01090000260052.a.a.a.a.x	ENSGT00940000155331.A.f	ENSGT00940000156146.`b.b	ENSGT00940000154242.b.g	ENSGT00940000155121
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	22	ST6GALNAC5 (ENSSSAG00000095398)	asb17 (ENSSSAG00000040559)	ENSSSAG00000040409	ENSSSAG00000006614	ENSSSAG00000040149	ENSSSAG00000119148	ENSSSAG00000116905	ENSSSAG00000120550	ENSSSAG00000111630	ENSSSAG00000039787	ENSSSAG00000091507	ENSSSAG00000089659	ENSSSAG00000120390	ENSSSAG00000088723	ENSSSAG00000101444	ENSSSAG00000119824 #22	ENSSSAG00000112186 #23	ENSSSAG00000100155	ENSSSAG00000059580	ENSSSAG00000039434	ENSSSAG00000059820	ENSSSAG00000086791	ENSSSAG00000082844	ENSSSAG00000039701	ENSSSAG00000085593	ENSSSAG00000039762	ENSSSAG00000039569	ENSSSAG00000098114	ENSSSAG00000119096	ENSSSAG00000082213	ENSSSAG00000103354
Atlantic salmon	MODERN SPECIES	5												ENSSSAG00000088934	ENSSSAG00000098193	ENSSSAG00000090904	ENSSSAG00000121288	ENSSSAG00000060043 #22	ENSSSAG00000083103	ENSSSAG00000095902	ENSSSAG00000004971	ENSSSAG00000116413	ENSSSAG00000004984	ENSSSAG00000005122	ENSSSAG00000057836	ENSSSAG00000116465	ankh (ENSSSAG00000007237)	ENSSSAG00000096915	dnaaf11 (ENSSSAG00000007262)	KCNQ3 (ENSSSAG00000007325)	efr3a (ENSSSAG00000007630)	adcy8 (ENSSSAG00000040213)	ENSSSAG00000041199
River trout	MODERN SPECIES	24	ENSSTUG00000031491	ENSSTUG00000031497	ENSSTUG00000031514	viml (ENSSTUG00000031705)	ENSSTUG00000031746	tcea1 (ENSSTUG00000031764)	atp6v1h (ENSSTUG00000031805)	ENSSTUG00000032114	myom1a (ENSSTUG00000032219)	ENSSTUG00000033216	cacnb2b (ENSSTUG00000016776)	samhd1 (ENSSTUG00000016818)	ENSSTUG00000017897	ENSSTUG00000018416	ENSSTUG00000018440	COL6A1 (ENSSTUG00000018676) #22	COL6A2 (ENSSTUG00000018774) #23	ENSSTUG00000018809	ENSSTUG00000018827	ENSSTUG00000018857	si:ch73-52e5.2 (ENSSTUG00000018868)	ENSSTUG00000018908	si:ch73-52e5.2 (ENSSTUG00000018924)	ENSSTUG00000018957
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT00530000063273.a	ENSGT00390000003420.a.b.a.a	ENSGT00940000156826.d.b	ENSGT00940000160043.e.b	ENSGT00940000157311.m	ENSGT00390000005307.s.c	ENSGT00940000155917	ENSGT00940000157634.d.g	ENSGT00390000018077	ENSGT00390000012433.b.a	ENSGT00940000164586.h	ENSGT00940000156207.b.c.a.b.a.a.b	ENSGT00390000006876	ENSGT00940000156470.u.b.c	ENSGT00940000154499.hb.c.b	ENSGT00940000162889.e.c #22	ENSGT00940000155682.g.b.d #23	ENSGT00390000018807	ENSGT00390000016988.a.a.a.a.a.a	ENSGT00390000004859.c.b	ENSGT00940000160141.e.a	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b	ENSGT00940000157362.c	ENSGT00940000154044.a.a.q.b	ENSGT01090000260052.a.a.a.a	ENSGT00940000155331.A.f	ENSGT00940000156146.`b.b.e	ENSGT00940000178871.b	ENSGT00940000154242.b.g	ENSGT00940000155121	ENSGT00390000003289.m.b
Oncorhynchus_a	ANCESTRAL SPECIES	611																ENSGT00940000162889.e.c #22	ENSGT00940000155682.g.b.d #23
Coho salmon	MODERN SPECIES	19	fubp1 (ENSOKIG00005041087)	ENSOKIG00005041062	usp33 (ENSOKIG00005039039)	zzz3 (ENSOKIG00005038810)	ENSOKIG00005038792	ak5 (ENSOKIG00005038771)	ENSOKIG00005038765	RPS8 (ENSOKIG00005038747)	ENSOKIG00005038733	znf414 (ENSOKIG00005038725)	ENSOKIG00005038716	CSNK1G2 (ENSOKIG00005038560)	ENSOKIG00005038513	ENSOKIG00005038280	ENSOKIG00005038131	COL6A1 (ENSOKIG00005038026) #22	COL6A2 (ENSOKIG00005037926) #23	ENSOKIG00005037912	ENSOKIG00005037871	ENSOKIG00005037837	ENSOKIG00005049575	ENSOKIG00005049559	si:ch73-52e5.2 (ENSOKIG00005049549)	LRRC24 (ENSOKIG00005049535)	ENSOKIG00005049531	ENSOKIG00005049528	ADCYAP1R1 (ENSOKIG00005049310)	FYCO1 (ENSOKIG00005049231)	ENSOKIG00005049225	ENSOKIG00005049219	ENSOKIG00005049215
Rainbow trout	MODERN SPECIES	20	ENSOMYG00000021849	ENSOMYG00000021887	ENSOMYG00000021899	ENSOMYG00000021908	ENSOMYG00000021939	ENSOMYG00000021958	ENSOMYG00000059876	ENSOMYG00000072421	ENSOMYG00000050536	ENSOMYG00000022240	ENSOMYG00000064501	ENSOMYG00000053995	ENSOMYG00000063945	ENSOMYG00000074510	ENSOMYG00000067429	ENSOMYG00000071651 #22	ENSOMYG00000024758 #23	ENSOMYG00000024806	rpl37a (ENSOMYG00000066767)	ENSOMYG00000064679	ENSOMYG00000024821	ENSOMYG00000024839	ENSOMYG00000024886	ENSOMYG00000015353	ftr67 (ENSOMYG00000024905)	adcyap1r1a (ENSOMYG00000050892)	ENSOMYG00000064914	ENSOMYG00000069359	ENSOMYG00000025323	ENSOMYG00000068487	ENSOMYG00000074379
Oncorhynchus	ANCESTRAL SPECIES	46	ENSGT00940000158429	ENSGT00390000012433.b.b	ENSGT00940000159923	ENSGT00940000160852	ENSGT00390000014590	ENSGT00520000060044	ENSGT00390000010157.a	ENSGT00940000156207.b.c.a.b.a.a.a	ENSGT00940000154587.a.b.v	ENSGT00940000156470.u.b.d	ENSGT00390000005318.a.a.b	ENSGT00940000159466.f	ENSGT00390000003574.b	ENSGT00940000154149.b.a.g.a	ENSGT00940000154499.hb.d	ENSGT00940000162889.e.d #22	ENSGT00940000155682.g.b.c #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00950000183014.f.b.b.a.b	ENSGT01100000263556.a.a.p.a	ENSGT01090000260052.a.b.i	ENSGT00940000159827.e	ENSGT00450000040296	ENSGT00550000074817.v	ENSGT00940000157341.g	ENSGT00390000003289.m.a	ENSGT00940000159123.a
Oncorhynchus_a	ANCESTRAL SPECIES	124	ENSGT00940000158429	ENSGT00390000012433.b.b	ENSGT00940000159923	ENSGT00940000160852	ENSGT00390000014590	ENSGT00520000060044	ENSGT00390000010157.a	ENSGT00940000156207.b.c.a.b.a.a.a	ENSGT00940000154587.a.b.v	ENSGT00940000156470.u.b.d	ENSGT00390000005318.a.a.b	ENSGT00940000159466.f	ENSGT00390000003574.b	ENSGT00940000154149.b.a.g.a	ENSGT00940000154499.hb.d	ENSGT00940000162889.e.d #22	ENSGT00940000155682.g.b.c #23	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00950000183014.f.b.b.a.b	ENSGT01090000260052.a.b.i	ENSGT00940000159827.e	ENSGT00450000040296	ENSGT00550000074817.v	ENSGT00940000157341.g	ENSGT00390000003289.m.a	ENSGT00940000159123.a
Coho salmon	MODERN SPECIES	23	RPS8 (ENSOKIG00005030829)	hectd3 (ENSOKIG00005030910)	BEST4 (ENSOKIG00005031658)	ndc1 (ENSOKIG00005031718)	zgc:113691 (ENSOKIG00005031831)	yipf1 (ENSOKIG00005031840)	ENSOKIG00005031870	mknk2a (ENSOKIG00005031885)	ENSOKIG00005031961	ENSOKIG00005032008	mfsd12a (ENSOKIG00005032281)	prrx1a (ENSOKIG00005032405)	kifap3b (ENSOKIG00005032443)	ENSOKIG00005032638	rnf2 (ENSOKIG00005032723)	COL6A1 (ENSOKIG00005032756) #22	COL6A2 (ENSOKIG00005032823) #23	zgc:162816 (ENSOKIG00005032965)	ENSOKIG00005032991	ENSOKIG00005033276	pecr (ENSOKIG00005033339)	ndufb3 (ENSOKIG00005033350)	ENSOKIG00005033361	XCR1 (ENSOKIG00005033419)	NEUROD6 (ENSOKIG00005033423)	ENSOKIG00005033428	bag1 (ENSOKIG00005033434)	ENSOKIG00005033493	oprk1 (ENSOKIG00005033536)	atp6v1h (ENSOKIG00005033648)	rgs20 (ENSOKIG00005033785)
Rainbow trout	MODERN SPECIES	29	ndc1 (ENSOMYG00000008961)	ENSOMYG00000009096	ENSOMYG00000009303	acadm (ENSOMYG00000009406)	ENSOMYG00000009432	ENSOMYG00000068137	ENSOMYG00000070813	ENSOMYG00000040367	ENSOMYG00000074048	kifap3b (ENSOMYG00000051848)	ENSOMYG00000052984	ENSOMYG00000060736	ENSOMYG00000053433	rnf2 (ENSOMYG00000059763)	ENSOMYG00000060331	ENSOMYG00000053025 #22	ENSOMYG00000008232 #23	ENSOMYG00000066731	ENSOMYG00000008150	ENSOMYG00000008197	ENSOMYG00000030486	ENSOMYG00000065507	ENSOMYG00000069628	ENSOMYG00000055913	ENSOMYG00000070710	ENSOMYG00000055518	ENSOMYG00000007970	ENSOMYG00000007939	ENSOMYG00000007925	ENSOMYG00000016186	bag1 (ENSOMYG00000016179)
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000162889.f #22
Salmo	ANCESTRAL SPECIES																	ENSGT00940000162889.f #22
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000095504	ENSSSAG00000082681	ndc1 (ENSSSAG00000077793)	zgc:113691 (ENSSSAG00000078175)	yipf1 (ENSSSAG00000078179)	ENSSSAG00000078182	mknk2a (ENSSSAG00000105404)	ENSSSAG00000083965	csnk1g2a (ENSSSAG00000040163)	mfsd12a (ENSSSAG00000120062)	prrx1a (ENSSSAG00000104687)	kifap3b (ENSSSAG00000110039)	ENSSSAG00000047151	rnf2 (ENSSSAG00000093859)	ENSSSAG00000114011	ENSSSAG00000112044 #22	ENSSSAG00000102193	ENSSSAG00000010340 #23	ENSSSAG00000005914	ENSSSAG00000111495	ENSSSAG00000005923	ENSSSAG00000005944	pecr (ENSSSAG00000006003)	ENSSSAG00000006051	ENSSSAG00000006077	ENSSSAG00000121553	ENSSSAG00000102794	vath (ENSSSAG00000115585)	bag1 (ENSSSAG00000095448)	ENSSSAG00000012543	oprk1 (ENSSSAG00000089257)
Northern pike	MODERN SPECIES	2	ENSELUG00000011838	ENSELUG00000011864	znf414 (ENSELUG00000032352)	ENSELUG00000030847	mknk2a (ENSELUG00000000430)	CSNK1G2 (ENSELUG00000011991)	mfsd12a (ENSELUG00000001637)	prrx1a (ENSELUG00000012056)	kifap3b (ENSELUG00000012102)	ENSELUG00000012243	ENSELUG00000012288	rnf2 (ENSELUG00000012310)	ivns1abpb (ENSELUG00000012365)	mrc1b (ENSELUG00000029154)	ENSELUG00000028016	COL6A1 (ENSELUG00000012467) #22	ENSELUG00000027054	COL6A2 (ENSELUG00000012520) #23	zgc:162816 (ENSELUG00000012541)	ENSELUG00000012606	CFAP410 (ENSELUG00000033795)	zgc:171772 (ENSELUG00000000463)	pecr (ENSELUG00000012660)	ndufb3 (ENSELUG00000012669)	ugt1b7 (ENSELUG00000012681)	casp20 (ENSELUG00000012710)	ENSELUG00000012775	si:ch73-52e5.2 (ENSELUG00000012838)	LRRC24 (ENSELUG00000012865)	ftr67 (ENSELUG00000012885)	ENSELUG00000033377
Spotted gar	MODERN SPECIES	650	atg9a (ENSLOCG00000009485)	ENSLOCG00000009495	ENSLOCG00000009506	pcnt (ENSLOCG00000009517) #30	zgc:112416 (ENSLOCG00000009535) #29	ENSLOCG00000009546	ENSLOCG00000009558	igf2bp2b (ENSLOCG00000009564)	tmem41ab (ENSLOCG00000009578)	ehhadh (ENSLOCG00000009587)	zgc:162707 (ENSLOCG00000009596)	vps8 (ENSLOCG00000009601)	nme9 (ENSLOCG00000009626)	SMARCAL1 (ENSLOCG00000009637)	marchf4l (ENSLOCG00000009654)	COL6A1 (ENSLOCG00000009665) #22	COL6A2 (ENSLOCG00000009684) #23	zgc:162816 (ENSLOCG00000009716)	xrcc5 (ENSLOCG00000009725)	tmem169a (ENSLOCG00000009744)	pecr (ENSLOCG00000009750)	ENSLOCG00000009762	ENSLOCG00000009771	pfklb (ENSLOCG00000009776)	MAP3K13 (ENSLOCG00000009793)	trpm2 (ENSLOCG00000009806)	CFAP410 (ENSLOCG00000009819)	ORC2 (ENSLOCG00000009832)	HYCC2 (ENSLOCG00000009846)	ndufb3 (ENSLOCG00000009855)	cflara (ENSLOCG00000009863)
Reedfish	MODERN SPECIES	16	ENSECRG00000018595	ENSECRG00000018623	ENSECRG00000018649	ENSECRG00000018784	gypc (ENSECRG00000019252)	sh3bp4 (ENSECRG00000019270)	bcs1l (ENSECRG00000019288)	ZNF142 (ENSECRG00000019317)	PLCD4 (ENSECRG00000019362)	cnot9 (ENSECRG00000019449)	ENSECRG00000019528	ybey (ENSECRG00000019552) #28	MCM3AP (ENSECRG00000019587) #27	lss (ENSECRG00000019653) #26	ftcd (ENSECRG00000019704) #24	COL6A1 (ENSECRG00000019734) #22	ENSECRG00000019795	ENSECRG00000019835 #23	COL6A2 (ENSECRG00000019859) #23	ENSECRG00000019900	prkag3b (ENSECRG00000019925)	ENSECRG00000019974	cnppd1 (ENSECRG00000020000)	abcb6a (ENSECRG00000020018)	ENSECRG00000020050	retreg2 (ENSECRG00000020072)	ENSECRG00000020094	ENSECRG00000020112	ENSECRG00000020137	ENSECRG00000020149	ENSECRG00000020160
Elephant shark	MODERN SPECIES	1561								PARD3B (ENSCMIG00000012376)	nrp2a (ENSCMIG00000012407)	ino80db (ENSCMIG00000012428)	ndufs1 (ENSCMIG00000012456)	eef1b2 (ENSCMIG00000012489)	ENSCMIG00000012501	klf7b (ENSCMIG00000012503)	pfklb (ENSCMIG00000012575)	COL6A1 (ENSCMIG00000012721) #22	COL6A2 (ENSCMIG00000012731) #23	SF3B1 (ENSCMIG00000012746)	coq10b (ENSCMIG00000012773)	hspd1 (ENSCMIG00000012777)	hspe1 (ENSCMIG00000012789)	RFTN2 (ENSCMIG00000012791)	BOLL (ENSCMIG00000012794)	PLCL1 (ENSCMIG00000012806)	satb2 (ENSCMIG00000012810)	ftcdnl1 (ENSCMIG00000012821) ##24	zgc:153521 (ENSCMIG00000012823)	tyw5 (ENSCMIG00000012827)	ENSCMIG00000012828	ENSCMIG00000012834	KCTD18 (ENSCMIG00000012839)