Otophysi	ANCESTRAL SPECIES	122	ENSGT00390000017580 #8	ENSGT00940000166845 #9	ENSGT00950000182982.A.b #10	ENSGT00940000159325 #12	ENSGT00390000005826.b.f #11	ENSGT00940000154456.hb.a #13	ENSGT00940000155569.a.b #14	ENSGT00390000007336.a.b #15	ENSGT00950000182993.A.a.j #16	ENSGT00390000018651.a	ENSGT00940000156466 #17	ENSGT00940000158588 #18	ENSGT00900000141362.a.a #19	ENSGT00940000165287.a.a #20	ENSGT00390000005847 #21	ENSGT00940000165063 #22
Characiphysae	ANCESTRAL SPECIES	20	ENSGT00940000154742.a #7	ENSGT00390000017580 #8	ENSGT00940000166845 #9	ENSGT00950000182982.A.b #10	ENSGT00940000159325 #12	ENSGT00390000005826.b.f #11	ENSGT00940000154456.hb.a #13	ENSGT00940000155569.a.b #14	ENSGT00390000007336.a.b #15	ENSGT00950000182993.A.a.j #16	ENSGT00940000156466 #17	ENSGT00940000158588 #18	ENSGT00900000141362.a.a #19	ENSGT00940000165287.a.a #20	ENSGT00390000005847 #21	ENSGT00940000165063 #22
Characiphysae_b	ANCESTRAL SPECIES	57	ENSGT00940000154742.a #7	ENSGT00390000017580 #8	ENSGT00940000166845 #9	ENSGT00950000182982.A.b #10	ENSGT00940000159325 #12	ENSGT00390000005826.b.f #11	ENSGT00940000154456.hb.a #13	ENSGT00940000155569.a.b #14	ENSGT00390000007336.a.b #15	ENSGT00950000182993.A.a.j #16	ENSGT00940000156466 #17	ENSGT00940000158588 #18	ENSGT00900000141362.a.a #19	ENSGT00940000165287.a.a #20	ENSGT00390000005847 #21	ENSGT00940000165063 #22
Characoidei	ANCESTRAL SPECIES	45	ENSGT00940000154742.a #7	ENSGT00390000017580 #8	ENSGT00940000166845 #9	ENSGT00950000182982.A.b #10	ENSGT00940000159325 #12	ENSGT00390000005826.b.f #11	ENSGT00940000154456.hb.a.a #13	ENSGT00940000155569.a.b #14	ENSGT00390000007336.a.b #15	ENSGT00950000182993.A.a.j #16	ENSGT00940000156466 #17	ENSGT00940000158588 #18	ENSGT00900000141362.a.a #19	ENSGT00940000165287.a.a #20	ENSGT00390000005847 #21	ENSGT00940000165063 #22
Mexicana tetra	MODERN SPECIES	8	ankrd12 (ENSAMXG00000043499) #7	ndufv2 (ENSAMXG00000032899) #8	acss2l (ENSAMXG00000011998) #9	MTCL1 (ENSAMXG00000029826) #10	napgb (ENSAMXG00000039216) #11	rab12 (ENSAMXG00000004882) #12	PIEZO2 (ENSAMXG00000001272) #13	ENSAMXG00000001307 #14	ABHD8 (ENSAMXG00000001323) #15	ENSAMXG00000029455 #16	capsla (ENSAMXG00000001341) #17	ranbp3b (ENSAMXG00000001354) #18	ENSAMXG00000034052 #19	ENSAMXG00000041723 #20	pnhd (ENSAMXG00000035228) #21	admp (ENSAMXG00000001399) #22	ENSAMXG00000001409 #23	per2 (ENSAMXG00000001431) #24	hes6 (ENSAMXG00000032679) #25	itm2cb (ENSAMXG00000043807) #26	lpar5a (ENSAMXG00000026037) #27	GPR55 (ENSAMXG00000033084) #28	gigyf2 (ENSAMXG00000001520) #29	ENSAMXG00000035794 #30	acsl3b (ENSAMXG00000001549) #31	pax3a (ENSAMXG00000043552) #32	ENSAMXG00000043829 #33	ENSAMXG00000038548 #34	ENSAMXG00000040635 #35	ENSAMXG00000037000 #36	ENSAMXG00000039377 #37
Red-bellied piranha	MODERN SPECIES	330									ENSPNAG00000004840 #14	ABHD8 (ENSPNAG00000027807) #15	ENSPNAG00000027816 #16	capsla (ENSPNAG00000027839) #17	ranbp3b (ENSPNAG00000027857) #18	ENSPNAG00000004270 #19	ENSPNAG00000027904 #20	admp (ENSPNAG00000027948) #22	ENSPNAG00000027963	per2 (ENSPNAG00000004287) #24	hes6 (ENSPNAG00000028022) #25	itm2cb (ENSPNAG00000028063) #26	lpar5a (ENSPNAG00000028071) #27	GPR55 (ENSPNAG00000005315) #28	gigyf2 (ENSPNAG00000004304) #29	ENSPNAG00000028118 #30	ACSL3 (ENSPNAG00000028151) #31	pax3a (ENSPNAG00000004317) #32	ENSPNAG00000006072 #33	ENSPNAG00000006923	CCNY (ENSPNAG00000028264)	ENSPNAG00000028282	ENSPNAG00000028310
Electric eel	MODERN SPECIES	281	ENSEEEG00000022717 #7	ndufv2 (ENSEEEG00000022716) #8	acss2l (ENSEEEG00000022715) #9	ENSEEEG00000022714 #10	rab12 (ENSEEEG00000022711) #12	napgb (ENSEEEG00000022709) #11	ENSEEEG00000022700 #13	ENSEEEG00000022696	ABHD8 (ENSEEEG00000022695) #15	ENSEEEG00000022694	ranbp3b (ENSEEEG00000022692) #18	ENSEEEG00000022688 #19	ENSEEEG00000022687 #20	ENSEEEG00000022686 #20	pnhd (ENSEEEG00000022683) #21	admp (ENSEEEG00000022682) #22	ENSEEEG00000022681	ENSEEEG00000022678	ENSEEEG00000022674	ENSEEEG00000022672
Channel catfish	MODERN SPECIES	12	ENSIPUG00000017722 #7	ankrd12 (ENSIPUG00000017670) #7	ndufv2 (ENSIPUG00000017607) #8	ACSS2 (ENSIPUG00000017496) #9	mtcl1 (ENSIPUG00000017423) #10	rab12 (ENSIPUG00000017401) #12	Napg (ENSIPUG00000017351) #11	ENSIPUG00000017050 #13	ENSIPUG00000016998 #14	abhd8 (ENSIPUG00000016953) #15	ENSIPUG00000016937 #16	capsla (ENSIPUG00000016920) #17	ranbp3 (ENSIPUG00000016831) #18	ENSIPUG00000016815 #19	pnhd (ENSIPUG00000016792) #21	admp (ENSIPUG00000016781) #22	ENSIPUG00000016727	PTPRS (ENSIPUG00000016658)	FEM1A (ENSIPUG00000016646)	ENSIPUG00000016618	Harbi1 (ENSIPUG00000016605)	ENSIPUG00000016596	ENSIPUG00000016556	PRKAB2 (ENSIPUG00000016527)	ENSIPUG00000016488 #14	piwil1 (ENSIPUG00000016443)	sdhc (ENSIPUG00000016379)	cadm3 (ENSIPUG00000016275)	KIRREL (ENSIPUG00000016174)	epc1b (ENSIPUG00000016101)	arhgap12a (ENSIPUG00000016023)
Cyprinoidei	ANCESTRAL SPECIES	69	ENSGT00950000183066.a.b.a.a	ENSGT00390000007058	ENSGT00940000154742.a #7	ENSGT00390000017580 #8	ENSGT00940000166845 #9	ENSGT00950000182982.A.b #10	ENSGT00940000159325 #12	ENSGT00390000005826.b.f #11	ENSGT00940000154456.hb.a #13	ENSGT00940000155569.a.b #14	ENSGT00390000007336.a.b #15	ENSGT00950000182993.A.a.j #16	ENSGT00900000141362.a.a #19	ENSGT00940000165287.a.a #20	ENSGT00390000005847 #21	ENSGT00940000165063 #22
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	238	ENSGT00940000154742.a.w #7	ENSGT00390000017580.a #8	ENSGT00940000166845.e.a #9	ENSGT00950000182982.A.b.u #10	ENSGT00940000159325.a #12	ENSGT00390000005826.b.f.a #11	ENSGT00940000154456.hb.a.e #13	ENSGT00940000155569.a.b #14	ENSGT00390000007336.a.b.a #15	ENSGT00950000182993.A.a.j.c.a #16	ENSGT00940000156466.db.a #17	ENSGT00940000158588.j.b #18	ENSGT00900000141362.a.a.e.a #19	ENSGT01000000214896.A	ENSGT00390000005847.a #21	ENSGT00940000165063.g #22	ENSGT00940000160466.a	ENSGT00940000157246.a.b	ENSGT01030000234542.b.b.a.a.a.b.wb.b.a	ENSGT00940000157178.g	ENSGT00940000157924.e
Cyprininae_a	ANCESTRAL SPECIES	59	ENSGT00390000017580.a #8	ENSGT00940000166845.e.a #9	ENSGT00950000182982.A.b.u #10	ENSGT00940000159325.a #12	ENSGT00390000005826.b.f.a #11	ENSGT00940000154456.hb.a.e #13	ENSGT00940000155569.a.b #14	ENSGT00390000007336.a.b.a #15	ENSGT00950000182993.A.a.j.c.a #16	ENSGT00950000182993.A.a.j.d #16	ENSGT00940000156466.db.a #17	ENSGT00940000158588.j.b #18	ENSGT00900000141362.a.a.e.a #19	ENSGT01000000214896.A	ENSGT00390000005847.a #21	ENSGT00940000165063.g #22	ENSGT00940000160466.b	ENSGT00940000155363.w	ENSGT00940000164495.c.a.a	ENSGT00940000155438.a.q	ENSGT00950000182915.b.b.a.b.c.b.a	ENSGT00940000163917.a.b.b	ENSGT00940000158364.a.b	ENSGT00940000165007.a.a	ENSGT00940000154779.a.a.c.b	ENSGT00390000015368.a.a.c.a	ENSGT00940000157413.j	ENSGT00940000158081.o.b.a	ENSGT00940000153593.h.b.a	ENSGT01030000234515.a.b.b.b.a	ENSGT00940000154412.C.c.a.a
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	455										ENSSGRG00000007727 #16	capsla (ENSSGRG00000007726) #17	ranbp3b (ENSSGRG00000007676) #18	ENSSGRG00000007670 #19	ENSSGRG00000007669	pnhd (ENSSGRG00000007668) #21	admp (ENSSGRG00000007662) #22	admp (ENSSGRG00000007661) #22	CIB3 (ENSSGRG00000007644)	ENSSGRG00000007642	ENSSGRG00000007137	LPL (ENSSGRG00000006955)	ap1m1 (ENSSGRG00000006676)	klf2b (ENSSGRG00000006665)	ENSSGRG00000006659	ENSSGRG00000005235	ATCAY (ENSSGRG00000005215)	nmrk2 (ENSSGRG00000004999)	jund (ENSSGRG00000004993)	pgpep1 (ENSSGRG00000004992)	upf1 (ENSSGRG00000004701)	HOMER3 (ENSSGRG00000004689)
Golden-line barbel	MODERN SPECIES	455									ENSSGRG00000007727 #16	capsla (ENSSGRG00000007726) #17	ranbp3b (ENSSGRG00000007676) #18	ENSSGRG00000007670 #19	ENSSGRG00000007669	pnhd (ENSSGRG00000007668) #21	admp (ENSSGRG00000007662) #22	admp (ENSSGRG00000007661) #22	CIB3 (ENSSGRG00000007644)	ENSSGRG00000007642	ENSSGRG00000007137	LPL (ENSSGRG00000006955)	ap1m1 (ENSSGRG00000006676)	klf2b (ENSSGRG00000006665)	ENSSGRG00000006659	ENSSGRG00000005235	ATCAY (ENSSGRG00000005215)	nmrk2 (ENSSGRG00000004999)	jund (ENSSGRG00000004993)	pgpep1 (ENSSGRG00000004992)	upf1 (ENSSGRG00000004701)	HOMER3 (ENSSGRG00000004689)	ENSSGRG00000004686
Goldfish	MODERN SPECIES	19	ENSCARG00000023249	ndufv2 (ENSCARG00000023222) #8	acss2l (ENSCARG00000022791) #9	MTCL1 (ENSCARG00000022758) #10	rab12 (ENSCARG00000022749) #12	napgb (ENSCARG00000022710) #11	PIEZO2 (ENSCARG00000022077) #13	ENSCARG00000022011 #14	ABHD8 (ENSCARG00000021995) #15	ENSCARG00000021990 #16	capsla (ENSCARG00000021984) #17	ranbp3b (ENSCARG00000021950) #18	ENSCARG00000021934 #19	ENSCARG00000021930	pnhd (ENSCARG00000021921) #21	admp (ENSCARG00000021903) #22	ENSCARG00000021897	CIB3 (ENSCARG00000021892)	rab8a (ENSCARG00000021840)	TPM4 (ENSCARG00000021759)	LPL (ENSCARG00000021713)	ap1m1 (ENSCARG00000021242)	klf2b (ENSCARG00000021223)	ENSCARG00000021214	ENSCARG00000020750	rx2 (ENSCARG00000020728)	ATCAY (ENSCARG00000020674)	nmrk2 (ENSCARG00000011532)	ENSCARG00000011526	loxl5b (ENSCARG00000011513)	jund (ENSCARG00000011501)
Cyprininae	ANCESTRAL SPECIES	142	ENSGT00940000154742.a.x #7	ENSGT00390000017580.b #8	ENSGT00940000166845.e.b #9	ENSGT00950000182982.A.b.v #10	ENSGT00940000159325.b #12	ENSGT00390000005826.b.f.b #11	ENSGT00940000154456.hb.a.f #13	ENSGT00390000007336.a.b.b #15	ENSGT00950000182993.A.a.j.c.b #16	ENSGT00940000156466.db.b #17	ENSGT00940000158588.j.a #18	ENSGT00900000141362.a.a.e.b #19	ENSGT00900000141362.a.a.f #19	ENSGT00940000165287.a.a #20	ENSGT00390000005847.b #21	ENSGT00940000165063.h #22	ENSGT00940000160466.b	ENSGT00940000155363.w	ENSGT01030000234542.b.b.a.a.a.b.xb	ENSGT01030000234542.b.b.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	11	ENSCARG00000041857	ENSCARG00000041828	ENSCARG00000041823	FEM1A (ENSCARG00000041813)	FEM1A (ENSCARG00000041785)	fcer1gl (ENSCARG00000041767)	NCSTN (ENSCARG00000041254)	pnp5b (ENSCARG00000041228)	jund (ENSCARG00000041219)	pgpep1 (ENSCARG00000041182)	upf1 (ENSCARG00000041022)	ENSCARG00000040961	ENSCARG00000040719	ENSCARG00000040695 #20	pnhd (ENSCARG00000040685) #21	admp (ENSCARG00000040664) #22	ENSCARG00000040473	ap1m1 (ENSCARG00000040258)	ENSCARG00000040236	klf2b (ENSCARG00000040217)	ENSCARG00000040093	ENSCARG00000040005	rx2 (ENSCARG00000039976)	cplx4c (ENSCARG00000039962)	ATCAY (ENSCARG00000039907)	nmrk2 (ENSCARG00000039889)	loxl5b (ENSCARG00000039848)
Goldfish	MODERN SPECIES	2813										ENSCARG00000060560 #19	ENSCARG00000060584	ENSCARG00000060631	ENSCARG00000060646	ENSCARG00000060652 #20	pnhd (ENSCARG00000060663) #21	admp (ENSCARG00000060675) #22	rab8a (ENSCARG00000060692)
Cyprininae_a	ANCESTRAL SPECIES	162	ENSGT00390000007058.e.b	ENSGT00940000154742.a.x #7	ENSGT00390000017580.b #8	ENSGT00940000166845.e.b #9	ENSGT00950000182982.A.b.v #10	ENSGT00940000159325.b #12	ENSGT00390000005826.b.f.b #11	ENSGT00940000154456.hb.a.f #13	ENSGT00390000007336.a.b.b #15	ENSGT00940000156466.db.b #17	ENSGT00940000158588.j.a #18	ENSGT00900000141362.a.a.e.b #19	ENSGT01000000214896.B	ENSGT00940000165287.a.a #20	ENSGT00390000005847.b #21	ENSGT00940000165063.h #22	ENSGT00940000160466.a	ENSGT00940000157246.a.a	ENSGT01030000234542.b.b.a.a.a.b.xb	ENSGT01030000234542.b.b.b	ENSGT01030000234542.b.b.a.a.a.b.wb.b.a	ENSGT00940000157178.g	ENSGT01030000234542.b.b.a.a.a.b.wb.b.b	ENSGT00940000157924.f	ENSGT00940000164495.c.a.b	ENSGT00940000155438.a.r	ENSGT00950000182915.b.b.a.b.c.b.b	ENSGT00940000163917.a.b.a	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000158364.a.a	ENSGT00940000165007.a.b
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	21	ankrd12 (ENSCCRG00000008581) #7	ndufv2 (ENSCCRG00000069342) #8	acss2l (ENSCCRG00000080986) #9	MTCL1 (ENSCCRG00000063869) #10	rab12 (ENSCCRG00000035454) #12	napgb (ENSCCRG00000035431) #11	ENSCCRG00000021449 #13	ENSCCRG00000014093	ENSCCRG00000069483 #16	ENSCCRG00000014088 #15	ranbp3b (ENSCCRG00000015662) #18	ENSCCRG00000068957 #19	ENSCCRG00000015682	ENSCCRG00000053089 #20	pnhd (ENSCCRG00000015688) #21	admp (ENSCCRG00000079125) #22	ENSCCRG00000074681	ap1m1 (ENSCCRG00000049217)	ENSCCRG00000016932	klf2b (ENSCCRG00000011217)	ENSCCRG00000081626	ENSCCRG00000019801	rx2 (ENSCCRG00000075008)	cplx4c (ENSCCRG00000079094)	ENSCCRG00000045180	nmrk2 (ENSCCRG00000045258)	loxl5b (ENSCCRG00000045132)	jund (ENSCCRG00000035101)	pgpep1 (ENSCCRG00000073516)	upf1 (ENSCCRG00000051892)	ENSCCRG00000058571
Common carp reference	MODERN SPECIES	29	ndufv2 (ENSCCRG00000008598) #8	acss2l (ENSCCRG00000077477) #9	MTCL1 (ENSCCRG00000064731) #10	rab12 (ENSCCRG00000001866) #12	napgb (ENSCCRG00000001797) #11	ENSCCRG00000000858 #13	ENSCCRG00000010057 #14	ENSCCRG00000010079 #15	ENSCCRG00000014085 #16	capsla (ENSCCRG00000009956) #17	ranbp3b (ENSCCRG00000009959) #18	ENSCCRG00000027011 #19	ENSCCRG00000037946	ENSCCRG00000030635	pnhd (ENSCCRG00000030625) #21	admp (ENSCCRG00000030620) #22	ENSCCRG00000052584	ENSCCRG00000076191	ENSCCRG00000007837	ENSCCRG00000049877	klf2b (ENSCCRG00000006413)	ENSCCRG00000053619	ENSCCRG00000076172	rx2 (ENSCCRG00000007794)	ENSCCRG00000051906	nmrk2 (ENSCCRG00000051935)	loxl5b (ENSCCRG00000074189)	pgpep1 (ENSCCRG00000007790)	upf1 (ENSCCRG00000007785)	ENSCCRG00000007775	uba52 (ENSCCRG00000007704)
Golden-line barbel	MODERN SPECIES	215	twsg1a (ENSSGRG00000038705)	ankrd12 (ENSSGRG00000038732) #7	ndufv2 (ENSSGRG00000038996) #8	acss2l (ENSSGRG00000039237) #9	MTCL1 (ENSSGRG00000039413) #10	rab12 (ENSSGRG00000039414) #12	napgb (ENSSGRG00000039419) #11	ENSSGRG00000039956 #13	ENSSGRG00000039961 #14	ABHD8 (ENSSGRG00000039962) #15	capsla (ENSSGRG00000039964) #17	ranbp3b (ENSSGRG00000039967) #18	ENSSGRG00000039969 #19	ENSSGRG00000039973 #20	pnhd (ENSSGRG00000039977) #21	admp (ENSSGRG00000039978) #22	CIB3 (ENSSGRG00000039980)	rab8a (ENSSGRG00000039981)	ENSSGRG00000039982	ENSSGRG00000039983	LPL (ENSSGRG00000039985)	AP1M1 (ENSSGRG00000040228)	klf2b (ENSSGRG00000040298)	ENSSGRG00000040301	ENSSGRG00000040310	cplx4c (ENSSGRG00000041707)	ATCAY (ENSSGRG00000041709)	ENSSGRG00000041711	nmrk2 (ENSSGRG00000041715)	loxl5b (ENSSGRG00000041775)	jund (ENSSGRG00000041777)
Zebrafish	MODERN SPECIES	11	acss2l (ENSDARG00000069029) #9	ENSDARG00000091408 #10	rab12 (ENSDARG00000089428) #12	napgb (ENSDARG00000043012) #11	ENSDARG00000112723 #13	PIEZO2 (ENSDARG00000107086) #13	ENSDARG00000099376 #14	ABHD8 (ENSDARG00000103518) #15	ENSDARG00000110877 #16	capsla (ENSDARG00000103521) #17	ENSDARG00000111796	ctnnbl1 (ENSDARG00000011958)	ranbp3b (ENSDARG00000069056) #18	ENSDARG00000115610 #19	pnhd (ENSDARG00000039070) #21	admp (ENSDARG00000025372) #22	ENSDARG00000110341	ENSDARG00000090727	zgc:165603 (ENSDARG00000098702)	ENSDARG00000070661	sirt6 (ENSDARG00000102963)	ENSDARG00000090903	ralbp1 (ENSDARG00000078653)	ENSDARG00000115832	gna11b (ENSDARG00000053326)	chico (ENSDARG00000019588)	tle2c (ENSDARG00000067832)	PLPP2 (ENSDARG00000002231)	theg (ENSDARG00000078644)	shda (ENSDARG00000094243)	yju2 (ENSDARG00000026185)