Mus_A	ANCESTRAL SPECIES	13	ENSGT00860000136312 #8	ENSGT00950000183167.a.b.b.b #9	ENSGT00950000183072.b.a #10	ENSGT00940000157629 #11	ENSGT00940000160106 #12	ENSGT00390000000685 #13	ENSGT00390000010077 #14	ENSGT00950000182882.A.a #15	ENSGT01030000234528.B.b.a.a.a #16	ENSGT00940000160845 #17	ENSGT00940000157422 #18	ENSGT00940000156263 #19	ENSGT00950000184761	ENSGT00940000161971 #20	ENSGT00500000044852.b #21	ENSGT00940000161446 #22	ENSGT00940000157032 #23	ENSGT00530000063734.b #24	ENSGT00950000183038.a.b.a #25	ENSGT00390000016511 #26	ENSGT00390000009755	ENSGT00940000161279 #27	ENSGT00940000161303 #28	ENSGT00940000154026.b.b.h.j.b #29	ENSGT00940000163840 #30	ENSGT00940000154026.b.b.h.j.a.a.a.e #31	ENSGT00940000154026.b.b.h.j.a.a.b #32	ENSGT00940000154026.b.b.h.j.a.a.a.f ##32	ENSGT00940000162337	ENSGT00940000162040 #33	ENSGT00940000161849 #34
Mus_B	ANCESTRAL SPECIES	12	ENSGT00860000136312 #8	ENSGT00950000183167.a.b.b.b #9	ENSGT00950000183072.b.a #10	ENSGT00940000157629 #11	ENSGT00940000160106 #12	ENSGT00390000000685 #13	ENSGT00390000010077 #14	ENSGT00950000182882.A.a #15	ENSGT01030000234528.B.b.a.a.a #16	ENSGT00940000160845 #17	ENSGT00940000157422 #18	ENSGT00940000156263 #19	ENSGT00950000184761	ENSGT00940000161971 #20	ENSGT00500000044852.b #21	ENSGT00940000161446 #22	ENSGT00940000157032 #23	ENSGT00530000063734.b #24	ENSGT00950000183038.a.b.a #25	ENSGT00390000016511 #26	ENSGT00390000009755	ENSGT00940000161279 #27	ENSGT00940000161303 #28	ENSGT00940000154026.b.b.h.j.b #29	ENSGT00940000163840 #30	ENSGT00940000154026.b.b.h.j.a.a.a.e #31	ENSGT00940000154026.b.b.h.j.a.a.b #32	ENSGT00940000154026.b.b.h.j.a.a.a.f ##32	ENSGT00940000162337	ENSGT00940000162040 #33	ENSGT00940000161849 #34
Mus_C	ANCESTRAL SPECIES	17	ENSGT00860000136312 #8	ENSGT00950000183167.a.b.b.b #9	ENSGT00950000183072.b.a #10	ENSGT00940000157629 #11	ENSGT00940000160106 #12	ENSGT00390000000685 #13	ENSGT00390000010077 #14	ENSGT00950000182882.A.a #15	ENSGT01030000234528.B.b.a.a.a #16	ENSGT00940000160845 #17	ENSGT00940000157422 #18	ENSGT00940000156263 #19	ENSGT00950000184761	ENSGT00940000161971 #20	ENSGT00500000044852.b #21	ENSGT00940000161446 #22	ENSGT00940000157032 #23	ENSGT00530000063734.b #24	ENSGT00950000183038.a.b.a #25	ENSGT00390000016511 #26	ENSGT00940000161279 #27	ENSGT00940000161303 #28	ENSGT00940000154026.b.b.h.j.b #29	ENSGT00940000163840 #30	ENSGT00940000154026.b.b.h.j.a.a.a.e #31	ENSGT00940000154026.b.b.h.j.a.a.b #32	ENSGT00940000162337	ENSGT00940000162040 #33	ENSGT00940000161849 #34	ENSGT00940000162738 #35	ENSGT00940000155862.a.b.b #36
spretus	MODERN SPECIES	6	Slc11a2 (MGP_SPRETEiJ_G0021182) #7	MGP_SPRETEiJ_G0021183 #8	Letmd1 (MGP_SPRETEiJ_G0021184) #9	Csrnp2 (MGP_SPRETEiJ_G0021185) #10	Tfcp2 (MGP_SPRETEiJ_G0021186) #11	Pou6f1 (MGP_SPRETEiJ_G0021187) #12	Dazap2 (MGP_SPRETEiJ_G0021188) #13	Smagp (MGP_SPRETEiJ_G0021189) #14	Bin2 (MGP_SPRETEiJ_G0021190) #15	Cela1 (MGP_SPRETEiJ_G0021191) #16	Galnt6 (MGP_SPRETEiJ_G0021192) #17	Slc4a8 (MGP_SPRETEiJ_G0021193) #18	Scn8a (MGP_SPRETEiJ_G0021194) #19	Fignl2 (MGP_SPRETEiJ_G0021195) #20	Ankrd33 (MGP_SPRETEiJ_G0021196) #21	Acvrl1 (MGP_SPRETEiJ_G0021197) #22	Acvr1b (MGP_SPRETEiJ_G0021198) #23	Tamalin (MGP_SPRETEiJ_G0021199) #24	Nr4a1 (MGP_SPRETEiJ_G0021200) #25	Atg101 (MGP_SPRETEiJ_G0021201) #26	Krt80 (MGP_SPRETEiJ_G0021202) #27	Krt7 (MGP_SPRETEiJ_G0021203) #28	MGP_SPRETEiJ_G0021204 #29	Krt88 (MGP_SPRETEiJ_G0021205) #30	MGP_SPRETEiJ_G0021206 #31	MGP_SPRETEiJ_G0021207 #32	Krt84 (MGP_SPRETEiJ_G0021208) #33	Krt82 (MGP_SPRETEiJ_G0021209) #34	Krt90 (MGP_SPRETEiJ_G0021210) #35	Krt75 (MGP_SPRETEiJ_G0021211) #36	MGP_SPRETEiJ_G0021212 #37
Steppe mouse	MODERN SPECIES	2055																Acvrl1 (ENSMSIG00000017719) #22	Acvr1b (ENSMSIG00000017908) #23	Tamalin (ENSMSIG00000017940) #24	Nr4a1 (ENSMSIG00000017961) #25	Atg101 (ENSMSIG00000017977) #26	ENSMSIG00000018005
Mouse	MODERN SPECIES	6	Slc11a2 (ENSMUSG00000023030) #7	Letmd1 (ENSMUSG00000037353) #9	Csrnp2 (ENSMUSG00000044636) #10	Tfcp2 (ENSMUSG00000009733) #11	Pou6f1 (ENSMUSG00000009739) #12	Dazap2 (ENSMUSG00000000346) #13	Smagp (ENSMUSG00000053559) #14	Bin2 (ENSMUSG00000098112) #15	Cela1 (ENSMUSG00000023031) #16	Galnt6 (ENSMUSG00000037280) #17	Slc4a8 (ENSMUSG00000023032) #18	Scn8a (ENSMUSG00000023033) #19	Tmdd1 (ENSMUSG00000113558)	Fignl2 (ENSMUSG00000095440) #20	Ankrd33 (ENSMUSG00000047034) #21	Acvrl1 (ENSMUSG00000000530) #22	Acvr1b (ENSMUSG00000000532) #23	Tamalin (ENSMUSG00000000531) #24	Nr4a1 (ENSMUSG00000023034) #25	Atg101 (ENSMUSG00000037204) #26	Smim41 (ENSMUSG00000075408)	Krt80 (ENSMUSG00000037185) #27	Krt7 (ENSMUSG00000023039) #28	Krt87 (ENSMUSG00000047641) #29	Krt88 (ENSMUSG00000063971) #30	Krt81 (ENSMUSG00000067615) #31	Krt86 (ENSMUSG00000067614) #32	Krt83 (ENSMUSG00000067613) ##32	Gm49425 (ENSMUSG00000116336)	Krt84 (ENSMUSG00000044294) #33	Krt82 (ENSMUSG00000049548) #34
Ryukyu mouse	MODERN SPECIES	6	Slc11a2 (MGP_CAROLIEiJ_G0020289) #7	MGP_CAROLIEiJ_G0020290 #8	Letmd1 (MGP_CAROLIEiJ_G0020291) #9	Csrnp2 (MGP_CAROLIEiJ_G0020292) #10	Tfcp2 (MGP_CAROLIEiJ_G0020293) #11	Pou6f1 (MGP_CAROLIEiJ_G0020294) #12	Dazap2 (MGP_CAROLIEiJ_G0020295) #13	Smagp (MGP_CAROLIEiJ_G0020296) #14	Bin2 (MGP_CAROLIEiJ_G0020297) #15	Cela1 (MGP_CAROLIEiJ_G0020298) #16	Galnt6 (MGP_CAROLIEiJ_G0020299) #17	Slc4a8 (MGP_CAROLIEiJ_G0020300) #18	Scn8a (MGP_CAROLIEiJ_G0020301) #19	Fignl2 (MGP_CAROLIEiJ_G0020302) #20	Ankrd33 (MGP_CAROLIEiJ_G0020303) #21	Acvrl1 (MGP_CAROLIEiJ_G0020304) #22	Acvr1b (MGP_CAROLIEiJ_G0020305) #23	Tamalin (MGP_CAROLIEiJ_G0020306) #24	Nr4a1 (MGP_CAROLIEiJ_G0020307) #25	Atg101 (MGP_CAROLIEiJ_G0020308) #26	Krt80 (MGP_CAROLIEiJ_G0020309) #27	Krt7 (MGP_CAROLIEiJ_G0020310) #28	MGP_CAROLIEiJ_G0020311 #29	Krt88 (MGP_CAROLIEiJ_G0020312) #30	Krt81 (MGP_CAROLIEiJ_G0020313) #31	Krt86 (MGP_CAROLIEiJ_G0020314) #32	Krt83 (MGP_CAROLIEiJ_G0020315) ##32	Krt84 (MGP_CAROLIEiJ_G0020316) #33	Krt82 (MGP_CAROLIEiJ_G0020317) #34	Krt90 (MGP_CAROLIEiJ_G0020318) #35	Krt75 (MGP_CAROLIEiJ_G0020319) #36