Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00940000153481.C #8	ENSGT00940000154391.a.b #9	ENSGT00390000006573 #10	ENSGT00940000157940 #11	ENSGT00390000012235 #12	ENSGT00390000011174 #13	ENSGT00390000016050	ENSGT00940000154956 #15	ENSGT00940000154934.B #16	ENSGT01050000244827.C.c.a.b	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #18	ENSGT00940000157614.f #19	ENSGT00940000157257 #20	ENSGT00940000161440 #21	ENSGT00940000161564 #22	ENSGT00390000003602 #23	ENSGT00390000012305.b	ENSGT00610000086058.b #24	ENSGT00940000158948.b #25	ENSGT00940000155499 #26	ENSGT00940000157034.gb #27	ENSGT00940000159635 #28	ENSGT00940000162967	ENSGT00390000009484	ENSGT00390000018451 #29	ENSGT00940000158706 #30	ENSGT00390000002316 #31	ENSGT00950000183120.e.b.a.a.a.n #32	ENSGT00940000156630 #33	ENSGT00390000004952.b #34
Guinea pig	MODERN SPECIES	6	EXOSC8 (ENSCPOG00000004450) #7	ALG5 (ENSCPOG00000004447) #8	ENSCPOG00000010255 #9	RFXAP (ENSCPOG00000010243) #10	CCNA1 (ENSCPOG00000002606) #11	SPART (ENSCPOG00000000296) #12	CCDC169 (ENSCPOG00000037354) #13	ENSCPOG00000033603 #14	DCLK1 (ENSCPOG00000005030) #15	NBEA (ENSCPOG00000004513) #16	RFC3 (ENSCPOG00000008739) #17	STARD13 (ENSCPOG00000005976) #18	KL (ENSCPOG00000002058) #19	PDS5B (ENSCPOG00000033286) #20	ENSCPOG00000038887 #21	N4BP2L1 (ENSCPOG00000003366) #22	BRCA2 (ENSCPOG00000005153) #23	FRY (ENSCPOG00000003917) #24	RXFP2 (ENSCPOG00000009157) #25	B3GLCT (ENSCPOG00000007455) #26	ENSCPOG00000035490 #27	ENSCPOG00000007441 #28	MEDAG (ENSCPOG00000003921) #29	ALOX5AP (ENSCPOG00000032690) #30	USPL1 (ENSCPOG00000009937) #31	HMGB1 (ENSCPOG00000031835) #32	KATNAL1 (ENSCPOG00000000804) #33	UBL3 (ENSCPOG00000036242) #34	SLC7A1 (ENSCPOG00000005590) #35	ENSCPOG00000005581 #36	SLC46A3 (ENSCPOG00000015460) #37
Hystricomorpha_b	ANCESTRAL SPECIES	48	ENSGT00940000153481.C #8	ENSGT00940000154391.a.b #9	ENSGT00390000006573 #10	ENSGT00940000157940 #11	ENSGT00390000012235 #12	ENSGT00390000011174 #13	ENSGT00390000016050	ENSGT00940000154956 #15	ENSGT00940000154934.B #16	ENSGT01050000244827.C.c.a.b	ENSGT00550000075006 #17	ENSGT00950000183061.a.a.b #18	ENSGT00940000157614.f #19	ENSGT00940000157257 #20	ENSGT00940000161440 #21	ENSGT00940000161564 #22	ENSGT00390000003602 #23	ENSGT00390000012305.b	ENSGT00610000086058.b #24	ENSGT00940000158948.b #25	ENSGT00940000155499 #26	ENSGT00940000157034.gb #27	ENSGT00940000159635 #28	ENSGT00940000162967	ENSGT00390000009484	ENSGT00390000018451 #29	ENSGT00940000158706 #30	ENSGT00390000002316 #31	ENSGT00950000183120.e.b.a.a.a.n #32	ENSGT00940000156630 #33	ENSGT00390000004952.b #34
Long-tailed chinchilla	MODERN SPECIES	138	ENSCLAG00000004108 #9	RFXAP (ENSCLAG00000005593) #10	CCNA1 (ENSCLAG00000004772) #11	SPART (ENSCLAG00000005026) #12	CCDC169 (ENSCLAG00000005286) #13	SOHLH2 (ENSCLAG00000005516)	DCLK1 (ENSCLAG00000006827) #15	NBEA (ENSCLAG00000005089) #16	MAB21L1 (ENSCLAG00000017521)	ENSCLAG00000003179	RFC3 (ENSCLAG00000003664) #17	STARD13 (ENSCLAG00000003814) #18	KL (ENSCLAG00000004704) #19	PDS5B (ENSCLAG00000003381) #20	ENSCLAG00000004607 #21	N4BP2L1 (ENSCLAG00000004721) #22	BRCA2 (ENSCLAG00000005830) #23	ZAR1L (ENSCLAG00000004947)	FRY (ENSCLAG00000005912) #24	RXFP2 (ENSCLAG00000005864) #25	B3GLCT (ENSCLAG00000003709) #26	ENSCLAG00000017567 #27	HSPH1 (ENSCLAG00000004472) #28	ENSCLAG00000004125	TEX26 (ENSCLAG00000005302)	MEDAG (ENSCLAG00000005352) #29	ALOX5AP (ENSCLAG00000005620) #30	USPL1 (ENSCLAG00000003130) #31	HMGB1 (ENSCLAG00000003343) #32	KATNAL1 (ENSCLAG00000003501) #33	UBL3 (ENSCLAG00000003772) #34
Degu	DUPLICATION
Degu	MODERN SPECIES	79	ENSODEG00000007164	DCLK1 (ENSODEG00000006680) #15	ENSODEG00000019680	ENSODEG00000006935	MAB21L1 (ENSODEG00000019299)	ENSODEG00000008552	NBEA (ENSODEG00000006275) #16	MCM5 (ENSODEG00000005912)	ENSODEG00000007112 #17	STARD13 (ENSODEG00000006691) #18	KL (ENSODEG00000006590) #19	ENSODEG00000019263	PDS5B (ENSODEG00000006819) #20	ENSODEG00000006412	N4BP2L2 (ENSODEG00000006521) #21	ENSODEG00000005727 #22	ENSODEG00000009214	ENSODEG00000007088 #23	ZAR1L (ENSODEG00000005981)	FRY (ENSODEG00000006572) #24	RXFP2 (ENSODEG00000008146) #25	B3GLCT (ENSODEG00000005559) #26	ENSODEG00000019264 #27	HSPH1 (ENSODEG00000005577) #28	ENSODEG00000006248	MEDAG (ENSODEG00000005967) #29	ALOX5AP (ENSODEG00000005645) #30	USPL1 (ENSODEG00000007176) #31	ENSODEG00000006120 ##32	KATNAL1 (ENSODEG00000005926) #33	UBL3 (ENSODEG00000005571) #34
Degu	MODERN SPECIES	57												ENSODEG00000011668	ENSODEG00000011599	TET2 (ENSODEG00000011623)	PPA2 (ENSODEG00000012171)	ENSODEG00000012068 #22	ENSODEG00000011526	ENSODEG00000010989	ENSODEG00000011418	INTS12 (ENSODEG00000010716)	GSTCD (ENSODEG00000011298)	NPNT (ENSODEG00000012616)	ENSODEG00000011791	ENSODEG00000010617	GIMD1 (ENSODEG00000011081)	DKK2 (ENSODEG00000013005)	PAPSS1 (ENSODEG00000012464)	SGMS2 (ENSODEG00000010387)	CYP2U1 (ENSODEG00000010344)	HADH (ENSODEG00000011168)	LEF1 (ENSODEG00000010436)