Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000166108	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000162717	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000162988	ENSGT00940000163246	ENSGT00940000162502	ENSGT00950000182925.D.a.b.a.a.b
Glires	ANCESTRAL SPECIES	10	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000166108	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00940000166548	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000162717	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000163246	ENSGT00940000162502	ENSGT00950000182925.D.a.b.a.a.b
Rodentia	ANCESTRAL SPECIES	10	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000166108	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00940000166548	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000162717	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000162988	ENSGT00940000166157	ENSGT00940000165111
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00390000002414	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00940000166548	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000162988	ENSGT00940000166157
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00390000002414	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000162988	ENSGT00940000166157	ENSGT00940000163245	ENSGT00940000162070	ENSGT00890000139436.A.b
Muroidea	ANCESTRAL SPECIES	50	ENSGT00390000002414	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000166157	ENSGT00940000162988	ENSGT00940000163245	ENSGT00940000162070
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00390000002414	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000166157	ENSGT00940000162988	ENSGT00940000163245	ENSGT00940000162070	ENSGT00530000063666.b
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00390000002414	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000163245	ENSGT00940000162070	ENSGT00530000063666.b	ENSGT00510000048637	ENSGT00940000159116
Cricetidae_B	ANCESTRAL SPECIES	54	ENSGT00390000002414	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b
Prairie vole	MODERN SPECIES	360	Eda (ENSMOCG00000007633) #7	Nalf2 (ENSMOCG00000015548) #8	Pja1 (ENSMOCG00000013022) #9	Efnb1 (ENSMOCG00000019155) #10	Stard8 (ENSMOCG00000000274) #11	ENSMOCG00000000213 #12	Yipf6 (ENSMOCG00000004509) #13	Ophn1 (ENSMOCG00000011502) #14	ENSMOCG00000018755 #15	ENSMOCG00000001177 #16	ENSMOCG00000017157 #17	Eda2r (ENSMOCG00000020804) #18	Pgr15l (ENSMOCG00000004906) #19	Gpr165 (ENSMOCG00000003694) #20	Heph (ENSMOCG00000017685) #21	Hsf3 (ENSMOCG00000003224) #22	Vsig4 (ENSMOCG00000000197) #23	Msn (ENSMOCG00000010407) #24	ENSMOCG00000019602 #25	Pbsn (ENSMOCG00000005173) #26	Prkx (ENSMOCG00000003139) #27	Tbl1x (ENSMOCG00000002063) #28	ENSMOCG00000013562 #29	ENSMOCG00000019029 #30	Mageb16 (ENSMOCG00000002574) #31	ENSMOCG00000018300 #32	Cfap47 (ENSMOCG00000020168) #33	ENSMOCG00000019110 #34	Prrg1 (ENSMOCG00000015594) #35	ENSMOCG00000018722 #36	ENSMOCG00000008368 #37
Northern American deer mouse	MODERN SPECIES	475	Eda (ENSPEMG00000012939) #7	Nalf2 (ENSPEMG00000015427) #8	Pja1 (ENSPEMG00000018003) #9	Efnb1 (ENSPEMG00000029561) #10	Stard8 (ENSPEMG00000006401) #11	Yipf6 (ENSPEMG00000006259) #13	Ophn1 (ENSPEMG00000000716) #14	ENSPEMG00000024504	Ar (ENSPEMG00000000264) #17	ENSPEMG00000024572	Eda2r (ENSPEMG00000010048) #18	Pgr15l (ENSPEMG00000011660) #19	ENSPEMG00000029584	Gpr165 (ENSPEMG00000027719) #20	Heph (ENSPEMG00000000424) #21	Hsf3 (ENSPEMG00000001674) #22	ENSPEMG00000028906	Vsig4 (ENSPEMG00000005797) #23	Msn (ENSPEMG00000014831) #24	Las1l (ENSPEMG00000001210)	Zc3h12b (ENSPEMG00000030441)	ENSPEMG00000031140	Zc4h2 (ENSPEMG00000026603)	Pfn5 (ENSPEMG00000030788)	Asb12 (ENSPEMG00000000256)	Amer1 (ENSPEMG00000012693)	Arhgef9 (ENSPEMG00000012933)	Spin4 (ENSPEMG00000002526)	ENSPEMG00000025830	ENSPEMG00000026975	Mageb11 (ENSPEMG00000008903)
Cricetinae	ANCESTRAL SPECIES	17	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00900000143655	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000163245	ENSGT00940000162070	ENSGT00530000063666.b	ENSGT00910000144208.c	ENSGT00940000159116	ENSGT00550000074801.g.b.d
Chinese hamster chok1gshd	MODERN SPECIES	33	Awat2 (ENSCGRG00001013715)	Eda (ENSCGRG00001000080) #7	Nalf2 (ENSCGRG00001018522) #8	ENSCGRG00001010332 #9	ENSCGRG00001014800	Efnb1 (ENSCGRG00001017480) #10	Stard8 (ENSCGRG00001012866) #11	Yipf6 (ENSCGRG00001024929) #13	Ophn1 (ENSCGRG00001024034) #14	ENSCGRG00001020174 #17	ENSCGRG00001012004 #17	Eda2r (ENSCGRG00001002185) #18	Pgr15l (ENSCGRG00001024706) #19	Gpr165 (ENSCGRG00001000577) #20	Heph (ENSCGRG00001020044) #21	Hsf3 (ENSCGRG00001022240) #22	Vsig4 (ENSCGRG00001003428) #23	Msn (ENSCGRG00001024846) #24	ENSCGRG00001000800	Las1l (ENSCGRG00001023388)	Zc3h12b (ENSCGRG00001018643)	Zc4h2 (ENSCGRG00001023095)	ENSCGRG00001018722	ENSCGRG00001021223	Fthl17a (ENSCGRG00001004869)	ENSCGRG00001016935	Tab3 (ENSCGRG00001020007)	Gk (ENSCGRG00001012921)	Tasl (ENSCGRG00001024295)	Nr0b1 (ENSCGRG00001023306)	ENSCGRG00001012714
Golden Hamster	MODERN SPECIES	727	Otud6a (ENSMAUG00000004694)	Awat2 (ENSMAUG00000003789)	ENSMAUG00000021914	Eda (ENSMAUG00000011572) #7	Nalf2 (ENSMAUG00000019622) #8	Pja1 (ENSMAUG00000021969) #9	ENSMAUG00000010856	Efnb1 (ENSMAUG00000019581) #10	Stard8 (ENSMAUG00000008744) #11	Ophn1 (ENSMAUG00000000560) #14	Ar (ENSMAUG00000001501) #17	ENSMAUG00000012150	Eda2r (ENSMAUG00000008260) #18	Gpr165 (ENSMAUG00000004553) #20	Heph (ENSMAUG00000008450) #21	Hsf3 (ENSMAUG00000013538) #22	Vsig4 (ENSMAUG00000021950) #23	Msn (ENSMAUG00000006616) #24	Las1l (ENSMAUG00000012113)	Zc3h12b (ENSMAUG00000017800)	Zc4h2 (ENSMAUG00000016038)	Asb12 (ENSMAUG00000020593)	Amer1 (ENSMAUG00000020197)	ENSMAUG00000001213	Arhgef9 (ENSMAUG00000000943)	Spin4 (ENSMAUG00000002658)	Maged1 (ENSMAUG00000011809)	Apoo (ENSMAUG00000009452)
Murinae	ANCESTRAL SPECIES	14	ENSGT00390000002414	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000162988	ENSGT00940000163245	ENSGT00940000162070	ENSGT00530000063666.b	ENSGT00510000048637
Mus	ANCESTRAL SPECIES	9	ENSGT00390000002414	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000162988	ENSGT00940000163245	ENSGT00940000162070	ENSGT00530000063666.b	ENSGT00510000048637
Mus_A	ANCESTRAL SPECIES	15	ENSGT00390000002414	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000162988	ENSGT00940000163245	ENSGT00940000162070	ENSGT00530000063666.b	ENSGT00510000048637
Mus_B	ANCESTRAL SPECIES	14	ENSGT00390000002414	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000162988	ENSGT00940000163245	ENSGT00940000162070	ENSGT00530000063666.b	ENSGT00510000048637
Mouse	MODERN SPECIES	37	Igbp1 (ENSMUSG00000031221)	Otud6a (ENSMUSG00000051582)	Awat2 (ENSMUSG00000031220)	Eda (ENSMUSG00000059327) #7	Nalf2 (ENSMUSG00000071719) #8	Pja1 (ENSMUSG00000034403) #9	Efnb1 (ENSMUSG00000031217) #10	Stard8 (ENSMUSG00000031216) #11	Yipf6 (ENSMUSG00000047694) #13	Ophn1 (ENSMUSG00000031214) #14	Ar (ENSMUSG00000046532) #17	Eda2r (ENSMUSG00000034457) #18	Pgr15l (ENSMUSG00000031212) #19	Gpr165 (ENSMUSG00000031210) #20	Heph (ENSMUSG00000031209) #21	Hsf3 (ENSMUSG00000045802) #22	Vsig4 (ENSMUSG00000044206) #23	Msn (ENSMUSG00000031207) #24	Las1l (ENSMUSG00000057421)	Zc3h12b (ENSMUSG00000035045)	Zc4h2 (ENSMUSG00000035062)	Pfn5 (ENSMUSG00000109858)	Asb12 (ENSMUSG00000031204)	Amer1 (ENSMUSG00000050332)	Arhgef9 (ENSMUSG00000025656)	Spin4 (ENSMUSG00000071722)	Zxdb (ENSMUSG00000073062)	Gspt2 (ENSMUSG00000071723)	Maged1 (ENSMUSG00000025151)	Apoo (ENSMUSG00000079508)	Fam90a1b (ENSMUSG00000043549)
Mus_C	ANCESTRAL SPECIES	22	ENSGT01030000234582.f.a.a.a.a	ENSGT00390000002414	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517.y #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000163245	ENSGT00940000162070	ENSGT00530000063666.b	ENSGT00510000048637	ENSGT00910000144208.c	ENSGT00940000159116
spretus	MODERN SPECIES	19	Igbp1 (MGP_SPRETEiJ_G0034432)	Otud6a (MGP_SPRETEiJ_G0034431)	Awat2 (MGP_SPRETEiJ_G0034430)	Eda (MGP_SPRETEiJ_G0034429) #7	Nalf2 (MGP_SPRETEiJ_G0034428) #8	MGP_SPRETEiJ_G0034427 #9	Efnb1 (MGP_SPRETEiJ_G0034426) #10	Stard8 (MGP_SPRETEiJ_G0034425) #11	Yipf6 (MGP_SPRETEiJ_G0034424) #13	Ophn1 (MGP_SPRETEiJ_G0034423) #14	Ar (MGP_SPRETEiJ_G0034422) #17	Eda2r (MGP_SPRETEiJ_G0034421) #18	Pgr15l (MGP_SPRETEiJ_G0034420) #19	Gpr165 (MGP_SPRETEiJ_G0034419) #20	Heph (MGP_SPRETEiJ_G0034418) #21	MGP_SPRETEiJ_G0034417 #22	Vsig4 (MGP_SPRETEiJ_G0034416) #23	Msn (MGP_SPRETEiJ_G0034415) #24	Las1l (MGP_SPRETEiJ_G0034414)	Zc3h12b (MGP_SPRETEiJ_G0034413)	Zc4h2 (MGP_SPRETEiJ_G0034412)	MGP_SPRETEiJ_G0034411	MGP_SPRETEiJ_G0034410	Amer1 (MGP_SPRETEiJ_G0034409)	Arhgef9 (MGP_SPRETEiJ_G0034408)	Spin4 (MGP_SPRETEiJ_G0034407)	Gspt2 (MGP_SPRETEiJ_G0034406)	Maged1 (MGP_SPRETEiJ_G0034405)	Apoo (MGP_SPRETEiJ_G0034404)	Fam90a1b (MGP_SPRETEiJ_G0034403)	Klhl15 (MGP_SPRETEiJ_G0034402)
Ryukyu mouse	MODERN SPECIES	19	Otud6a (MGP_CAROLIEiJ_G0033267)	Awat2 (MGP_CAROLIEiJ_G0033266)	Eda (MGP_CAROLIEiJ_G0033265) #7	Nalf2 (MGP_CAROLIEiJ_G0033264) #8	Pja1 (MGP_CAROLIEiJ_G0033263) #9	Efnb1 (MGP_CAROLIEiJ_G0033262) #10	Stard8 (MGP_CAROLIEiJ_G0033261) #11	Yipf6 (MGP_CAROLIEiJ_G0033260) #13	Ophn1 (MGP_CAROLIEiJ_G0033259) #14	Ar (MGP_CAROLIEiJ_G0033258) #17	Eda2r (MGP_CAROLIEiJ_G0033257) #18	Pgr15l (MGP_CAROLIEiJ_G0033256) #19	MGP_CAROLIEiJ_G0033255	Gpr165 (MGP_CAROLIEiJ_G0033254) #20	Heph (MGP_CAROLIEiJ_G0033253) #21	Hsf3 (MGP_CAROLIEiJ_G0033252) #22	Vsig4 (MGP_CAROLIEiJ_G0033251) #23	Msn (MGP_CAROLIEiJ_G0033250) #24	Las1l (MGP_CAROLIEiJ_G0033249)	MGP_CAROLIEiJ_G0033248	MGP_CAROLIEiJ_G0033247	Zc4h2 (MGP_CAROLIEiJ_G0033246)	Asb12 (MGP_CAROLIEiJ_G0033245)	Amer1 (MGP_CAROLIEiJ_G0033244)	MGP_CAROLIEiJ_G0033243	MGP_CAROLIEiJ_G0033242	Spin4 (MGP_CAROLIEiJ_G0033241)	MGP_CAROLIEiJ_G0033240	Gspt2 (MGP_CAROLIEiJ_G0033239)	Maged1 (MGP_CAROLIEiJ_G0033238)	Apoo (MGP_CAROLIEiJ_G0033237)
Shrew mouse	MODERN SPECIES	23	Igbp1 (MGP_PahariEiJ_G0031806)	Otud6a (MGP_PahariEiJ_G0031805)	Awat2 (MGP_PahariEiJ_G0031804)	Eda (MGP_PahariEiJ_G0031803) #7	Nalf2 (MGP_PahariEiJ_G0031802) #8	Pja1 (MGP_PahariEiJ_G0031801) #9	Efnb1 (MGP_PahariEiJ_G0031800) #10	Stard8 (MGP_PahariEiJ_G0031799) #11	Yipf6 (MGP_PahariEiJ_G0031798) #13	Ophn1 (MGP_PahariEiJ_G0031797) #14	Ar (MGP_PahariEiJ_G0031796) #17	Eda2r (MGP_PahariEiJ_G0031795) #18	Pgr15l (MGP_PahariEiJ_G0031794) #19	Gpr165 (MGP_PahariEiJ_G0031793) #20	Heph (MGP_PahariEiJ_G0031792) #21	Hsf3 (MGP_PahariEiJ_G0031791) #22	Vsig4 (MGP_PahariEiJ_G0031790) #23	Msn (MGP_PahariEiJ_G0031789) #24	Las1l (MGP_PahariEiJ_G0031788)	Zc3h12b (MGP_PahariEiJ_G0031787)	Zc4h2 (MGP_PahariEiJ_G0031786)	Asb12 (MGP_PahariEiJ_G0031785)	MGP_PahariEiJ_G0031784	Arhgef9 (MGP_PahariEiJ_G0031783)	Spin4 (MGP_PahariEiJ_G0031782)	Zxdb (MGP_PahariEiJ_G0031781)	Gspt2 (MGP_PahariEiJ_G0031780)	Maged1 (MGP_PahariEiJ_G0031779)	Apoo (MGP_PahariEiJ_G0031778)	Fam90a1b (MGP_PahariEiJ_G0031777)	Klhl15 (MGP_PahariEiJ_G0031776)
Rat	MODERN SPECIES	46	Eda (ENSRNOG00000032208) #7	Nalf2 (ENSRNOG00000038066) #8	Pja1 (ENSRNOG00000047339) #9	Rpl27-l1 (ENSRNOG00000031517)	Efnb1 (ENSRNOG00000006877) #10	Stard8 (ENSRNOG00000033883) #11	Yipf6 (ENSRNOG00000006642) #13	AABR07039112.1 (ENSRNOG00000022855)	Ophn1 (ENSRNOG00000026573) #14	Ar (ENSRNOG00000005639) #17	Eda2r (ENSRNOG00000013018) #18	RGD1565058 (ENSRNOG00000042779)	Pgr15l (ENSRNOG00000021547) #19	Gpr165 (ENSRNOG00000012995) #20	Heph (ENSRNOG00000012294) #21	LOC100360790 (ENSRNOG00000021694) #22	Vsig4 (ENSRNOG00000038132) #23	ENSRNOG00000070436	Msn (ENSRNOG00000030118) #24	Las1l (ENSRNOG00000021748)	Zc3h12b (ENSRNOG00000011508)	AABR07038957.1 (ENSRNOG00000054638)	Got2-ps6 (ENSRNOG00000057091)	Zc4h2 (ENSRNOG00000056735)	LOC102551431 (ENSRNOG00000066828)	Asb12 (ENSRNOG00000004197)	Amer1 (ENSRNOG00000007984)	Arhgef9 (ENSRNOG00000007733)	Spin4 (ENSRNOG00000038169)	Gmcl1-ps1 (ENSRNOG00000057644)	LOC120099132 (ENSRNOG00000067786)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1263	Otud6a (ENSNGAG00000017316)	Awat2 (ENSNGAG00000016871)	Eda (ENSNGAG00000022131) #7	Nalf2 (ENSNGAG00000023932) #8	Pja1 (ENSNGAG00000023580) #9	Efnb1 (ENSNGAG00000023292) #10	Stard8 (ENSNGAG00000021823) #11	Yipf6 (ENSNGAG00000015569) #13	Ophn1 (ENSNGAG00000022814) #14	ENSNGAG00000001772 #17	ENSNGAG00000023586 #17	Eda2r (ENSNGAG00000020621) #18	Pgr15l (ENSNGAG00000017900) #19	Gpr165 (ENSNGAG00000013805) #20	Heph (ENSNGAG00000014739) #21	Hsf3 (ENSNGAG00000014517) #22	Msn (ENSNGAG00000018984) #24	Las1l (ENSNGAG00000015256)	ENSNGAG00000001158	Zc4h2 (ENSNGAG00000021684)	ENSNGAG00000013890	Amer1 (ENSNGAG00000010278)	Asb12 (ENSNGAG00000023819)
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000166108	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00940000166548	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000162717	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.a.a.b	ENSGT00390000004891
Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT01030000234582.f.a.a.b	ENSGT01030000234582.f.a.a.a.a	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000162988	ENSGT00940000162502	ENSGT00950000182925.D.a.b.a.a.b	ENSGT00390000004891	ENSGT00940000162603
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000050762	ENSHGLG00000000120 #14	ENSHGLG00000050877	ENSHGLG00000013918	ENSHGLG00000036627	ENSHGLG00000037280	ENSHGLG00000032367	ENSHGLG00000040031	ENSHGLG00000032600	ENSHGLG00000000186 #17	ENSHGLG00000009972	ENSHGLG00000044361	ENSHGLG00000003998 #20	ENSHGLG00000036194	HEPH (ENSHGLG00000001643) #21	ENSHGLG00000007957 #22	ENSHGLG00000019568	ENSHGLG00000044766	VSIG4 (ENSHGLG00000011027) #23	MSN (ENSHGLG00000001737) #24	ENSHGLG00000049705	ENSHGLG00000002770	ENSHGLG00000044476	ENSHGLG00000003107	ENSHGLG00000020196	ENSHGLG00000037523	ENSHGLG00000046360	ENSHGLG00000042114	ENSHGLG00000005578	ENSHGLG00000019822	ASB12 (ENSHGLG00000000583)
Hystricomorpha_a	ANCESTRAL SPECIES	51	ENSGT01030000234582.f.a.a.b	ENSGT01030000234582.f.a.a.a.a	ENSGT00390000002414	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000162988	ENSGT00940000162502	ENSGT00950000182925.D.a.b.a.a.b	ENSGT00390000004891	ENSGT00940000162603
Guinea pig	MODERN SPECIES	122														EDA2R (ENSCPOG00000012156) #18	HEPH (ENSCPOG00000014821) #21	ENSCPOG00000022752 #22	MSN (ENSCPOG00000007103) #24	LAS1L (ENSCPOG00000014261)	ENSCPOG00000030973	ENSCPOG00000019721	ENSCPOG00000025026	AMER1 (ENSCPOG00000007668)	ASB12 (ENSCPOG00000007670)	ARHGEF9 (ENSCPOG00000015150)	SPIN4 (ENSCPOG00000000975)	EFNB1 (ENSCPOG00000038836) #10
Sciuridae	ANCESTRAL SPECIES	35	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000166108	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00940000166548	ENSGT00390000014785	ENSGT00940000159316	ENSGT01050000244818	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000162717	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00940000164144	ENSGT00950000182925.D.a.b.a.b
Marmotini	ANCESTRAL SPECIES	66	ENSGT00390000008808.d	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00390000008496.x.a.b	ENSGT00940000166548	ENSGT00390000014785	ENSGT00940000159316	ENSGT01050000244818.n	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000162717	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00940000164144	ENSGT00950000182925.D.a.b.a.b
Marmotini_b	ANCESTRAL SPECIES	98	ENSGT00390000008808.d	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00390000008496.x.a.b	ENSGT00940000166548	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000162717	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00940000164144	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000166157
Squirrel	MODERN SPECIES	235										OPHN1 (ENSSTOG00000013156) #14	AR (ENSSTOG00000021280) #17	EDA2R (ENSSTOG00000008369) #18	ENSSTOG00000022372 #19	ENSSTOG00000028241 #20	HEPH (ENSSTOG00000015310) #21	ENSSTOG00000021693 #22	VSIG4 (ENSSTOG00000002679) #23	MSN (ENSSTOG00000013341) #24	ENSSTOG00000033332	ENSSTOG00000023106	LAS1L (ENSSTOG00000028104)	ZC3H12B (ENSSTOG00000020962)	ZC4H2 (ENSSTOG00000020812)	ENSSTOG00000022000	MTMR8 (ENSSTOG00000025360)	ASB12 (ENSSTOG00000022386)	AMER1 (ENSSTOG00000014141)	ARHGEF9 (ENSSTOG00000026917)	ENSSTOG00000020597	SPIN4 (ENSSTOG00000020490)
Alpin marmot	MODERN SPECIES	74	AWAT2 (ENSMMMG00000022113)	EDA (ENSMMMG00000022117) #7	ENSMMMG00000022121 #8	PJA1 (ENSMMMG00000022128) #9	EFNB1 (ENSMMMG00000022134) #10	STARD8 (ENSMMMG00000022138) #11	YIPF6 (ENSMMMG00000022145) #13	OPHN1 (ENSMMMG00000022152) #14	ENSMMMG00000022173	ENSMMMG00000022177	AR (ENSMMMG00000022192) #17	EDA2R (ENSMMMG00000022202) #18	ENSMMMG00000022207 #19	ENSMMMG00000022208 #20	HEPH (ENSMMMG00000022210) #21	ENSMMMG00000022240 #22	VSIG4 (ENSMMMG00000022254) #23	ENSMMMG00000022266	ENSMMMG00000022267 #24	ENSMMMG00000022273	LAS1L (ENSMMMG00000022275)	ZC3H12B (ENSMMMG00000022296)	ENSMMMG00000022301	ZC4H2 (ENSMMMG00000022307)	ENSMMMG00000022311	ENSMMMG00000022313	ENSMMMG00000022323	MTMR8 (ENSMMMG00000022325)	ASB12 (ENSMMMG00000022346)	AMER1 (ENSMMMG00000022350)	ARHGEF9 (ENSMMMG00000022355)
Lagomorpha	ANCESTRAL SPECIES	40	ENSGT00390000002414	ENSGT00940000163556	ENSGT01030000234582.f.a.a.a.b	ENSGT00730000111220 #7	ENSGT00940000161362 #8	ENSGT00940000154585.b #9	ENSGT00940000160128 #10	ENSGT00950000183061.a.a.a.a.b #11	ENSGT00940000153168.A #13	ENSGT00940000160157 #14	ENSGT00940000155516 #17	ENSGT00940000153259.a.a.a #18	ENSGT00940000154336.c.b #19	ENSGT00940000154336.c.a #20	ENSGT00940000158517 #21	ENSGT00940000163549 #22	ENSGT00390000001432 #23	ENSGT01090000260082.d.a.a.a.a #24	ENSGT00940000166548	ENSGT00390000014785	ENSGT00940000159316	ENSGT00390000018389	ENSGT00940000153664.A.b.a	ENSGT00940000162717	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00970000194118	ENSGT00940000164144	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000166157
Rabbit	MODERN SPECIES	1401	NALF2 (ENSOCUG00000008430) #8	ENSOCUG00000029887	PJA1 (ENSOCUG00000007244) #9	EFNB1 (ENSOCUG00000013726) #10	STARD8 (ENSOCUG00000010783) #11	YIPF6 (ENSOCUG00000014510) #13	ENSOCUG00000001901	OPHN1 (ENSOCUG00000007381) #14	ENSOCUG00000032785	AR (ENSOCUG00000003142) #17	ENSOCUG00000039136	EDA2R (ENSOCUG00000022282) #18	ENSOCUG00000022819 #19	ENSOCUG00000023386 #20	HEPH (ENSOCUG00000014866) #21	ENSOCUG00000022713 #22	VSIG4 (ENSOCUG00000004172) #23	ENSOCUG00000021042	ENSOCUG00000000149 #24	ENSOCUG00000024108	LAS1L (ENSOCUG00000006760)	ZC3H12B (ENSOCUG00000006130)	ZC4H2 (ENSOCUG00000013393)	ENSOCUG00000029232	ENSOCUG00000023259	MTMR8 (ENSOCUG00000001617)	ASB12 (ENSOCUG00000023698)	AMER1 (ENSOCUG00000001613)	ENSOCUG00000030864	ENSOCUG00000011267	ENSOCUG00000027796