Glires	ANCESTRAL SPECIES	10	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00390000011272 #15	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b ##29	ENSGT01050000244815.B.a.a
Lagomorpha	ANCESTRAL SPECIES	103	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00390000011272 #15	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33
Rabbit	MODERN SPECIES	549	ENSOCUG00000026260 #7	PDZD4 (ENSOCUG00000017200) #8	L1CAM (ENSOCUG00000001102) #9	AVPR2 (ENSOCUG00000015695) #10	ARHGAP4 (ENSOCUG00000001107) #11	NAA10 (ENSOCUG00000001111) #12	RENBP (ENSOCUG00000025840) #13	HCFC1 (ENSOCUG00000001113) #14	TMEM187 (ENSOCUG00000001116) #15	IRAK1 (ENSOCUG00000025860) #16	MECP2 (ENSOCUG00000013147) #17	OPN1MW (ENSOCUG00000011466) #18	TEX28 (ENSOCUG00000021000) #19	TKTL1 (ENSOCUG00000000883) #20	FLNA (ENSOCUG00000000880) #21	EMD (ENSOCUG00000000882) #22	RA_m006_jsm7BED4f (ENSOCUG00000024511) #23	TAFAZZIN (ENSOCUG00000000885) #24	ENSOCUG00000017631 #25	GDI1 (ENSOCUG00000017639) #26	FAM50A (ENSOCUG00000017644) #27	PLXNA3 (ENSOCUG00000015623) #28	LAGE3 (ENSOCUG00000028990) #29	SLC10A3 (ENSOCUG00000022433) #30	FAM3A (ENSOCUG00000015663) #31	G6PD (ENSOCUG00000007866) #32	IKBKG (ENSOCUG00000007873) #33
Rodentia	ANCESTRAL SPECIES	10	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b ##29	ENSGT01050000244815.B.a.a
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b ##29	ENSGT01050000244815.B.a.a
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b ##29	ENSGT01050000244815.B.a.a
Muroidea	ANCESTRAL SPECIES	13	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b ##29	ENSGT01050000244815.B.a.a
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.q.a ##29	ENSGT01050000244815.B.a.a
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.q.a ##29	ENSGT01100000263574.b.j
Cricetidae_B	ANCESTRAL SPECIES	28	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.q.a ##29	ENSGT01100000263574.b.j
Northern American deer mouse	MODERN SPECIES	475	Idh3g (ENSPEMG00000011232)	Ssr4 (ENSPEMG00000008760)	Pdzd4 (ENSPEMG00000008494) #8	L1cam (ENSPEMG00000011592) #9	Avpr2 (ENSPEMG00000008325) #10	Arhgap4 (ENSPEMG00000019112) #11	ENSPEMG00000010870 #13	Hcfc1 (ENSPEMG00000011837) #14	Irak1 (ENSPEMG00000001469) #16	ENSPEMG00000025112	Mecp2 (ENSPEMG00000015115) #17	Opn1mw (ENSPEMG00000010994) #18	Tex28 (ENSPEMG00000009005) #19	Tktl1 (ENSPEMG00000012644) #20	Flna (ENSPEMG00000009562) #21	Emd (ENSPEMG00000012081) #22	ENSPEMG00000015703	Dnase1l1 (ENSPEMG00000013008)	Tafazzin (ENSPEMG00000007822) #24	Atp6ap1 (ENSPEMG00000009724) #25	Gdi1 (ENSPEMG00000010952) #26	Fam50a (ENSPEMG00000001727) #27	Plxna3 (ENSPEMG00000012781) #28	Lage3 (ENSPEMG00000011229) #29	Ubl4a (ENSPEMG00000027881)	Fam3a (ENSPEMG00000004757) #31	ENSPEMG00000017532 #32	Ikbkg (ENSPEMG00000031110) #33	ENSPEMG00000029875 ##29	ENSPEMG00000027888 ##29	ENSPEMG00000026245 ##29
Prairie vole	MODERN SPECIES	168													ENSMOCG00000017630 #18	Tex28 (ENSMOCG00000011491) #19	Flna (ENSMOCG00000007826) #21	Emd (ENSMOCG00000003977) #22	ENSMOCG00000013831	Dnase1l1 (ENSMOCG00000017402)	Tafazzin (ENSMOCG00000010108) #24	Atp6ap1 (ENSMOCG00000001026) #25	Gdi1 (ENSMOCG00000006575) #26	Fam50a (ENSMOCG00000015890) #27	Plxna3 (ENSMOCG00000002375) #28	ENSMOCG00000002473 #29	Ubl4a (ENSMOCG00000000785)	Slc10a3 (ENSMOCG00000008789) #30	Fam3a (ENSMOCG00000016025) #31	ENSMOCG00000015421 #32	Ikbkg (ENSMOCG00000011244) #33	ENSMOCG00000017711 ##29	Or7r1 (ENSMOCG00000002349)
Cricetinae	ANCESTRAL SPECIES	46	ENSGT01020000230394.e.a.a.b.a.b	ENSGT00940000157877.b	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a ##29
Chinese hamster chok1gshd	MODERN SPECIES	16	Idh3g (ENSCGRG00001012756)	Ssr4 (ENSCGRG00001019369)	Pdzd4 (ENSCGRG00001012732) #8	L1cam (ENSCGRG00001020541) #9	Avpr2 (ENSCGRG00001010799) #10	Arhgap4 (ENSCGRG00001023232) #11	Naa10 (ENSCGRG00001012595) #12	Hcfc1 (ENSCGRG00001019535) #14	Irak1 (ENSCGRG00001013928) #16	ENSCGRG00001022957	Mecp2 (ENSCGRG00001017650) #17	Opn1mw (ENSCGRG00001024157) #18	Tex28 (ENSCGRG00001014288) #19	ENSCGRG00001010950	Flna (ENSCGRG00001013154) #21	Emd (ENSCGRG00001023962) #22	ENSCGRG00001008387	DNASE1L1 (ENSCGRG00001019882)	TAZ (ENSCGRG00001016189) #24	Atp6ap1 (ENSCGRG00001015351) #25	Gdi1 (ENSCGRG00001020747) #26	Fam50a (ENSCGRG00001022147) #27	Plxna3 (ENSCGRG00001018950) #28	Lage3 (ENSCGRG00001006943) #29	Ubl4a (ENSCGRG00001024649)	Fam3a (ENSCGRG00001017590) #31	G6PDH (ENSCGRG00001009805) #32	Ikbkg (ENSCGRG00001023852) #33	Or7r1 (ENSCGRG00001002331)	ENSCGRG00001018213	ENSCGRG00001000852 ##29
Golden Hamster	MODERN SPECIES	857	Abcd1 (ENSMAUG00000020103)	Plxnb3 (ENSMAUG00000005458)	Srpk3 (ENSMAUG00000009935)	Idh3g (ENSMAUG00000000657)	ENSMAUG00000015090	Pdzd4 (ENSMAUG00000000466) #8	L1cam (ENSMAUG00000008575) #9	Avpr2 (ENSMAUG00000001098) #10	Arhgap4 (ENSMAUG00000020011) #11	Naa10 (ENSMAUG00000019021) #12	Hcfc1 (ENSMAUG00000018495) #14	Irak1 (ENSMAUG00000002430) #16	Mecp2 (ENSMAUG00000018195) #17	Opn1mw (ENSMAUG00000017549) #18	Tex28 (ENSMAUG00000011775) #19	Emd (ENSMAUG00000016655) #22	ENSMAUG00000013615	Dnase1l1 (ENSMAUG00000005714)	Tafazzin (ENSMAUG00000001836) #24	Atp6ap1 (ENSMAUG00000014514) #25	Gdi1 (ENSMAUG00000001476) #26	Fam50a (ENSMAUG00000020359) #27	Plxna3 (ENSMAUG00000019645) #28	Lage3 (ENSMAUG00000021750) #29	Ubl4a (ENSMAUG00000019612)	Slc10a3 (ENSMAUG00000005496) #30	Fam3a (ENSMAUG00000009961) #31	ENSMAUG00000008547 #32	Ikbkg (ENSMAUG00000008491) #33
Murinae	ANCESTRAL SPECIES	14	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.q.a ##29	ENSGT01050000244815.B.a.a
Mus	ANCESTRAL SPECIES	9	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a.o #32	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.q.a ##29	ENSGT01050000244815.B.a.a
Mus_A	ANCESTRAL SPECIES	15	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a.o #32	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.q.a ##29	ENSGT01050000244815.B.a.a
Mus_B	ANCESTRAL SPECIES	14	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a.o #32	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.q.a ##29	ENSGT01050000244815.B.a.a
Mouse	MODERN SPECIES	37	Idh3g (ENSMUSG00000002010)	Ssr4 (ENSMUSG00000002014)	Pdzd4 (ENSMUSG00000002006) #8	L1cam (ENSMUSG00000031391) #9	Arhgap4 (ENSMUSG00000031389) #11	Avpr2 (ENSMUSG00000031390) #10	Naa10 (ENSMUSG00000031388) #12	Renbp (ENSMUSG00000031387) #13	Hcfc1 (ENSMUSG00000031386) #14	Irak1 (ENSMUSG00000031392) #16	Mecp2 (ENSMUSG00000031393) #17	Opn1mw (ENSMUSG00000031394) #18	Tex28 (ENSMUSG00000062564) #19	Tktl1 (ENSMUSG00000031397) #20	Flna (ENSMUSG00000031328) #21	Emd (ENSMUSG00000001964) #22	Rpl10 (ENSMUSG00000008682)	Dnase1l1 (ENSMUSG00000019088)	Tafazzin (ENSMUSG00000009995) #24	Atp6ap1 (ENSMUSG00000019087) #25	Gdi1 (ENSMUSG00000015291) #26	Fam50a (ENSMUSG00000001962) #27	Plxna3 (ENSMUSG00000031398) #28	Lage3 (ENSMUSG00000015289) #29	Ubl4a (ENSMUSG00000015290)	Slc10a3 (ENSMUSG00000032806) #30	Fam3a (ENSMUSG00000031399) #31	Ikbkg (ENSMUSG00000004221) #33	G6pdx (ENSMUSG00000031400) #32	Ctag2l1 (ENSMUSG00000079536) ##29	Or7r1 (ENSMUSG00000043715)
Mus_C	ANCESTRAL SPECIES	27	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a.o #32	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.q.a ##29	ENSGT01050000244815.B.a.a
spretus	MODERN SPECIES	19	Idh3g (MGP_SPRETEiJ_G0034315)	Ssr4 (MGP_SPRETEiJ_G0034316)	Pdzd4 (MGP_SPRETEiJ_G0034317) #8	L1cam (MGP_SPRETEiJ_G0034318) #9	Arhgap4 (MGP_SPRETEiJ_G0034319) #11	Avpr2 (MGP_SPRETEiJ_G0034320) #10	Naa10 (MGP_SPRETEiJ_G0034321) #12	Renbp (MGP_SPRETEiJ_G0034322) #13	Hcfc1 (MGP_SPRETEiJ_G0034323) #14	Irak1 (MGP_SPRETEiJ_G0034324) #16	Mecp2 (MGP_SPRETEiJ_G0034325) #17	Opn1mw (MGP_SPRETEiJ_G0034326) #18	Tex28 (MGP_SPRETEiJ_G0034327) #19	Tktl1 (MGP_SPRETEiJ_G0034328) #20	Flna (MGP_SPRETEiJ_G0034329) #21	Emd (MGP_SPRETEiJ_G0034330) #22	MGP_SPRETEiJ_G0034331	Dnase1l1 (MGP_SPRETEiJ_G0034332)	Tafazzin (MGP_SPRETEiJ_G0034333) #24	Atp6ap1 (MGP_SPRETEiJ_G0034334) #25	Gdi1 (MGP_SPRETEiJ_G0034335) #26	Fam50a (MGP_SPRETEiJ_G0034336) #27	Plxna3 (MGP_SPRETEiJ_G0034337) #28	Lage3 (MGP_SPRETEiJ_G0034338) #29	Ubl4a (MGP_SPRETEiJ_G0034339)	Slc10a3 (MGP_SPRETEiJ_G0034340) #30	Fam3a (MGP_SPRETEiJ_G0034341) #31	Ikbkg (MGP_SPRETEiJ_G0034342) #33	G6pdx (MGP_SPRETEiJ_G0034343) #32	MGP_SPRETEiJ_G0034344 ##29	Or7r1 (MGP_SPRETEiJ_G0034345)
Steppe mouse	MODERN SPECIES	2038																Emd (ENSMSIG00000013919) #22	ENSMSIG00000014127 #21	Tktl1 (ENSMSIG00000014148) #20	Tex28 (ENSMSIG00000014172) #19	Opn1mw (ENSMSIG00000014183) #18	ENSMSIG00000014223
Ryukyu mouse	MODERN SPECIES	19	Idh3g (MGP_CAROLIEiJ_G0033160)	Ssr4 (MGP_CAROLIEiJ_G0033161)	Pdzd4 (MGP_CAROLIEiJ_G0033162) #8	L1cam (MGP_CAROLIEiJ_G0033163) #9	Arhgap4 (MGP_CAROLIEiJ_G0033164) #11	Avpr2 (MGP_CAROLIEiJ_G0033165) #10	Naa10 (MGP_CAROLIEiJ_G0033166) #12	Renbp (MGP_CAROLIEiJ_G0033167) #13	Hcfc1 (MGP_CAROLIEiJ_G0033168) #14	Irak1 (MGP_CAROLIEiJ_G0033169) #16	Mecp2 (MGP_CAROLIEiJ_G0033170) #17	Opn1mw (MGP_CAROLIEiJ_G0033171) #18	Tex28 (MGP_CAROLIEiJ_G0033172) #19	Tktl1 (MGP_CAROLIEiJ_G0033173) #20	Flna (MGP_CAROLIEiJ_G0033174) #21	Emd (MGP_CAROLIEiJ_G0033175) #22	MGP_CAROLIEiJ_G0033176	Dnase1l1 (MGP_CAROLIEiJ_G0033177)	Tafazzin (MGP_CAROLIEiJ_G0033178) #24	Atp6ap1 (MGP_CAROLIEiJ_G0033179) #25	Gdi1 (MGP_CAROLIEiJ_G0033180) #26	Fam50a (MGP_CAROLIEiJ_G0033181) #27	Plxna3 (MGP_CAROLIEiJ_G0033182) #28	Lage3 (MGP_CAROLIEiJ_G0033183) #29	Ubl4a (MGP_CAROLIEiJ_G0033184)	Slc10a3 (MGP_CAROLIEiJ_G0033185) #30	Fam3a (MGP_CAROLIEiJ_G0033186) #31	Ikbkg (MGP_CAROLIEiJ_G0033187) #33	G6pdx (MGP_CAROLIEiJ_G0033188) #32	Or7r1 (MGP_CAROLIEiJ_G0033189)	Or13ae2 (MGP_CAROLIEiJ_G0033190)
Shrew mouse	MODERN SPECIES	23	Idh3g (MGP_PahariEiJ_G0031703)	Ssr4 (MGP_PahariEiJ_G0031704)	Pdzd4 (MGP_PahariEiJ_G0031705) #8	L1cam (MGP_PahariEiJ_G0031706) #9	Arhgap4 (MGP_PahariEiJ_G0031707) #11	Avpr2 (MGP_PahariEiJ_G0031708) #10	Naa10 (MGP_PahariEiJ_G0031709) #12	Renbp (MGP_PahariEiJ_G0031710) #13	Hcfc1 (MGP_PahariEiJ_G0031711) #14	Irak1 (MGP_PahariEiJ_G0031712) #16	Mecp2 (MGP_PahariEiJ_G0031713) #17	Opn1mw (MGP_PahariEiJ_G0031714) #18	Tex28 (MGP_PahariEiJ_G0031715) #19	MGP_PahariEiJ_G0031716 #20	Flna (MGP_PahariEiJ_G0031717) #21	Emd (MGP_PahariEiJ_G0031718) #22	MGP_PahariEiJ_G0031719	Dnase1l1 (MGP_PahariEiJ_G0031720)	Tafazzin (MGP_PahariEiJ_G0031721) #24	Atp6ap1 (MGP_PahariEiJ_G0031722) #25	Gdi1 (MGP_PahariEiJ_G0031723) #26	Fam50a (MGP_PahariEiJ_G0031724) #27	Plxna3 (MGP_PahariEiJ_G0031725) #28	Lage3 (MGP_PahariEiJ_G0031726) #29	Ubl4a (MGP_PahariEiJ_G0031727)	Slc10a3 (MGP_PahariEiJ_G0031728) #30	Fam3a (MGP_PahariEiJ_G0031729) #31	Ikbkg (MGP_PahariEiJ_G0031730) #33	G6pdx (MGP_PahariEiJ_G0031731) #32	Or7r1 (MGP_PahariEiJ_G0031732)	Or13ae2 (MGP_PahariEiJ_G0031733)
Rat	MODERN SPECIES	46	Idh3g (ENSRNOG00000055572)	Ssr4 (ENSRNOG00000053172)	Pdzd4 (ENSRNOG00000056174) #8	L1cam (ENSRNOG00000061230) #9	Arhgap4 (ENSRNOG00000058545) #11	Avpr2 (ENSRNOG00000059862) #10	Naa10 (ENSRNOG00000060063) #12	Renbp (ENSRNOG00000054765) #13	Hcfc1 (ENSRNOG00000051948) #14	Irak1 (ENSRNOG00000060869) #16	Mecp2 (ENSRNOG00000056659) #17	Opn1mw (ENSRNOG00000051529) #18	Tex28 (ENSRNOG00000051438) #19	Tktl1 (ENSRNOG00000055557) #20	Flna (ENSRNOG00000054890) #21	Emd (ENSRNOG00000058882) #22	Rpl10 (ENSRNOG00000056765)	Dnase1l1 (ENSRNOG00000055641)	ENSRNOG00000063225	Tafazzin (ENSRNOG00000053023) #24	Atp6ap1 (ENSRNOG00000054352) #25	Gdi1 (ENSRNOG00000056870) #26	Fam50a (ENSRNOG00000058439) #27	Plxna3 (ENSRNOG00000060464) #28	Lage3 (ENSRNOG00000053456)	Slc10a3 (ENSRNOG00000060580) #30	Ubl4a (ENSRNOG00000053061)	Fam3a (ENSRNOG00000060623) #31	G6pd (ENSRNOG00000056728) #32	Ikbkg (ENSRNOG00000060936) #33	LOC690348 (ENSRNOG00000060839) ##29
Upper Galilee mountains blind mole rat	MODERN SPECIES	660	Srpk3 (ENSNGAG00000021121)	Idh3g (ENSNGAG00000017889)	ENSNGAG00000015787	Pdzd4 (ENSNGAG00000009443) #8	L1cam (ENSNGAG00000013550) #9	Avpr2 (ENSNGAG00000009849) #10	Arhgap4 (ENSNGAG00000015413) #11	Naa10 (ENSNGAG00000020303) #12	Renbp (ENSNGAG00000021686) #13	Hcfc1 (ENSNGAG00000013083) #14	Irak1 (ENSNGAG00000011647) #16	Mecp2 (ENSNGAG00000009171) #17	Opn1mw (ENSNGAG00000011604) #18	Tex28 (ENSNGAG00000023701) #19	Flna (ENSNGAG00000013524) #21	Emd (ENSNGAG00000018770) #22	ENSNGAG00000023746	Dnase1l1 (ENSNGAG00000024155)	Tafazzin (ENSNGAG00000008680) #24	Atp6ap1 (ENSNGAG00000021512) #25	Gdi1 (ENSNGAG00000023333) #26	Fam50a (ENSNGAG00000021495) #27	ENSNGAG00000012608	Plxna3 (ENSNGAG00000022548) #28	Lage3 (ENSNGAG00000023293) #29	Ubl4a (ENSNGAG00000023782)	Slc10a3 (ENSNGAG00000007975) #30	Fam3a (ENSNGAG00000016683) #31	ENSNGAG00000020668 #32	Ikbkg (ENSNGAG00000019535) #33	ENSNGAG00000024034 ##29
Lesser Egyptian jerboa	MODERN SPECIES	224	Ssr4 (ENSJJAG00000017842)	Pdzd4 (ENSJJAG00000018534) #8	L1cam (ENSJJAG00000021077) #9	Avpr2 (ENSJJAG00000018314) #10	Arhgap4 (ENSJJAG00000021798) #11	Naa10 (ENSJJAG00000023398) #12	Renbp (ENSJJAG00000010739) #13	Hcfc1 (ENSJJAG00000012815) #14	Irak1 (ENSJJAG00000013849) #16	Mecp2 (ENSJJAG00000022463) #17	ENSJJAG00000022596	Opn1mw (ENSJJAG00000022699) #18	Tex28 (ENSJJAG00000019769) #19	Tktl1 (ENSJJAG00000010328) #20	Flna (ENSJJAG00000015450) #21	Emd (ENSJJAG00000019656) #22	ENSJJAG00000014235	Tafazzin (ENSJJAG00000015233) #24	ENSJJAG00000019557 #25	Gdi1 (ENSJJAG00000008815) #26	Fam50a (ENSJJAG00000010389) #27	Plxna3 (ENSJJAG00000020257) #28	Lage3 (ENSJJAG00000022478) #29	ENSJJAG00000022788	Slc10a3 (ENSJJAG00000022929) #30	Fam3a (ENSJJAG00000023156) #31	ENSJJAG00000023806 #32	Ikbkg (ENSJJAG00000023964) #33
Kangaroo rat	MODERN SPECIES	526	Gab3 (ENSDORG00000006809)	ENSDORG00000000625 ##29	Ikbkg (ENSDORG00000028140) #33	ENSDORG00000012731 #32	Fam3a (ENSDORG00000025173) #31	Slc10a3 (ENSDORG00000005197) #30	Ubl4a (ENSDORG00000005196)	Lage3 (ENSDORG00000029875) #29	Plxna3 (ENSDORG00000000853) #28	Fam50a (ENSDORG00000008851) #27	Gdi1 (ENSDORG00000008848) #26	Atp6ap1 (ENSDORG00000008847) #25	Tafazzin (ENSDORG00000029677) #24	ENSDORG00000004369	Flna (ENSDORG00000004370) #21	Emd (ENSDORG00000004375) #22	Tktl1 (ENSDORG00000013785) #20	Tex28 (ENSDORG00000010136) #19	Opn1mw (ENSDORG00000026454) #18	Mecp2 (ENSDORG00000014978) #17	Irak1 (ENSDORG00000013876) #16	Hcfc1 (ENSDORG00000002756) #14	Renbp (ENSDORG00000002755) #13	Naa10 (ENSDORG00000002753) #12	Arhgap4 (ENSDORG00000002750) #11	Avpr2 (ENSDORG00000002747) #10	L1cam (ENSDORG00000014093) #9	Pdzd4 (ENSDORG00000028112) #8	Ssr4 (ENSDORG00000006030)	Idh3g (ENSDORG00000006029)	Srpk3 (ENSDORG00000006026)
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##29
Sciuridae	ANCESTRAL SPECIES	27	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A #27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33	ENSGT01050000244815.B.a.a
Marmotini	ANCESTRAL SPECIES	83	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A.e #27	ENSGT01050000244850.A.a #28	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33	ENSGT01050000244815.B.a.a
Alpin marmot	MODERN SPECIES	136	IDH3G (ENSMMMG00000008193)	SSR4 (ENSMMMG00000008221)	PDZD4 (ENSMMMG00000008247) #8	L1CAM (ENSMMMG00000008292) #9	AVPR2 (ENSMMMG00000008488) #10	ARHGAP4 (ENSMMMG00000008497) #11	ENSMMMG00000009143 #12	RENBP (ENSMMMG00000009149) #13	HCFC1 (ENSMMMG00000009171) #14	IRAK1 (ENSMMMG00000009239) #16	MECP2 (ENSMMMG00000009970) #17	ENSMMMG00000010010 #18	TEX28 (ENSMMMG00000010023) #19	TKTL1 (ENSMMMG00000010036) #20	FLNA (ENSMMMG00000010080) #21	EMD (ENSMMMG00000014270) #22	ENSMMMG00000014279	DNASE1L1 (ENSMMMG00000014299)	TAFAZZIN (ENSMMMG00000014302) #24	GDI1 (ENSMMMG00000014475) #26	FAM50A (ENSMMMG00000014490) #27	PLXNA3 (ENSMMMG00000014513) #28	UBL4A (ENSMMMG00000014537)	SLC10A3 (ENSMMMG00000014545) #30	FAM3A (ENSMMMG00000014550) #31	G6PD (ENSMMMG00000014645) #32	IKBKG (ENSMMMG00000014671) #33	ENSMMMG00000014778
Marmotini_b	ANCESTRAL SPECIES	124	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.A.e #27	ENSGT01050000244850.A.a #28	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33	ENSGT01050000244815.B.a.a
Squirrel	MODERN SPECIES	409	IDH3G (ENSSTOG00000008261)	SSR4 (ENSSTOG00000008278)	PDZD4 (ENSSTOG00000021423) #8	L1CAM (ENSSTOG00000008316) #9	AVPR2 (ENSSTOG00000008352) #10	ARHGAP4 (ENSSTOG00000022503) #11	NAA10 (ENSSTOG00000010237) #12	RENBP (ENSSTOG00000010247) #13	HCFC1 (ENSSTOG00000029220) #14	IRAK1 (ENSSTOG00000007991) #16	MECP2 (ENSSTOG00000006094) #17	ENSSTOG00000024701 #18	TEX28 (ENSSTOG00000022078) #19	TKTL1 (ENSSTOG00000005014) #20	FLNA (ENSSTOG00000005036) #21	EMD (ENSSTOG00000014689) #22	ENSSTOG00000011857	DNASE1L1 (ENSSTOG00000011867)	TAFAZZIN (ENSSTOG00000011873) #24	ATP6AP1 (ENSSTOG00000004401) #25	GDI1 (ENSSTOG00000004429) #26	ENSSTOG00000004448 #27	PLXNA3 (ENSSTOG00000003432) #28	UBL4A (ENSSTOG00000022150)	SLC10A3 (ENSSTOG00000026515) #30	FAM3A (ENSSTOG00000022234) #31	IKBKG (ENSSTOG00000011082) #33	G6PD (ENSSTOG00000021077) #32	ENSSTOG00000027400
Arctic ground squirrel	MODERN SPECIES	823															FLNA (ENSUPAG00010000336) #21	EMD (ENSUPAG00010000276) #22	ENSUPAG00010000252	DNASE1L1 (ENSUPAG00010000232)	TAFAZZIN (ENSUPAG00010000055) #24	ATP6AP1 (ENSUPAG00010011086) #25	GDI1 (ENSUPAG00010011085) #26	ENSUPAG00010011078 #27	PLXNA3 (ENSUPAG00010011001) #28	ENSUPAG00010010993	ENSUPAG00010010991 #29	SLC10A3 (ENSUPAG00010010974) #30	FAM3A (ENSUPAG00010010917) #31	IKBKG (ENSUPAG00010010819) #33	ENSUPAG00010010808	ENSUPAG00010010804	ENSUPAG00010010787
Eurasian red squirrel	MODERN SPECIES	156	ENSSVLG00005017218	IKBKG (ENSSVLG00005017293) #33	G6PD (ENSSVLG00005017520) #32	FAM3A (ENSSVLG00005017584) #31	SLC10A3 (ENSSVLG00005017774) #30	UBL4A (ENSSVLG00005017819)	LAGE3 (ENSSVLG00005017858) #29	PLXNA3 (ENSSVLG00005017881) #28	FAM50A (ENSSVLG00005017921) #27	GDI1 (ENSSVLG00005017962) #26	ATP6AP1 (ENSSVLG00005018016) #25	TAFAZZIN (ENSSVLG00005018196) #24	DNASE1L1 (ENSSVLG00005018343)	ENSSVLG00005018375	FLNA (ENSSVLG00005018546) #21	EMD (ENSSVLG00005019520) #22	TKTL1 (ENSSVLG00005017318) #20	TEX28 (ENSSVLG00005017596) #19	ENSSVLG00005017738	ENSSVLG00005017793 #18	MECP2 (ENSSVLG00005017899) #17	ENSSVLG00005018093 #16	HCFC1 (ENSSVLG00005018524) #14	RENBP (ENSSVLG00005019023) #13	NAA10 (ENSSVLG00005019123) #12	ARHGAP4 (ENSSVLG00005019458) #11	ENSSVLG00005019536	AVPR2 (ENSSVLG00005019578) #10	PDZD4 (ENSSVLG00005019686) #8	SSR4 (ENSSVLG00005019816)	IDH3G (ENSSVLG00005019902)
Hystricomorpha	ANCESTRAL SPECIES	54	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.B.a.a ##27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33	ENSGT01050000244815.B.a.a	ENSGT00940000159803
Hystricomorpha_a	ANCESTRAL SPECIES	61	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.B.a.a ##27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33	ENSGT01050000244815.B.a.a	ENSGT00940000159803
Guinea pig	MODERN SPECIES	148	SRPK3 (ENSCPOG00000006881)	IDH3G (ENSCPOG00000006890)	SSR4 (ENSCPOG00000006898)	PDZD4 (ENSCPOG00000019482) #8	L1CAM (ENSCPOG00000005519) #9	AVPR2 (ENSCPOG00000012697) #10	ENSCPOG00000026143 #11	NAA10 (ENSCPOG00000011495) #12	ENSCPOG00000024784 #13	IRAK1 (ENSCPOG00000039151) #16	MECP2 (ENSCPOG00000012579) #17	ENSCPOG00000011198 #18	ENSCPOG00000021789 #19	TKTL1 (ENSCPOG00000011767) #20	FLNA (ENSCPOG00000002672) #21	EMD (ENSCPOG00000002642) #22	ENSCPOG00000002355	DNASE1L1 (ENSCPOG00000005648)	TAFAZZIN (ENSCPOG00000020454) #24	ATP6AP1 (ENSCPOG00000005972) #25	GDI1 (ENSCPOG00000032738) #26	ENSCPOG00000005974 ##27	PLXNA3 (ENSCPOG00000011493) #28	ENSCPOG00000034445 #29	UBL4A (ENSCPOG00000040690)	SLC10A3 (ENSCPOG00000007289) #30	FAM3A (ENSCPOG00000019367) #31	G6PD (ENSCPOG00000021395) #32	IKBKG (ENSCPOG00000021550) #33	ENSCPOG00000026136	GAB3 (ENSCPOG00000002987)
Hystricomorpha_b	ANCESTRAL SPECIES	84	ENSGT00940000157877.b	ENSGT00950000182989.D.a.a.g.a	ENSGT00390000008992	ENSGT00950000183062.a.b #8	ENSGT00940000157506 #9	ENSGT01050000244882.b.c.b #10	ENSGT00950000182824.a.b.b #11	ENSGT00550000074803 #12	ENSGT00390000013740 #13	ENSGT00940000161383 #14	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #24	ENSGT00940000156650 #25	ENSGT00950000182994.B.a.a.a #26	ENSGT00390000004735.B.a.a ##27	ENSGT01050000244850.A.a #28	ENSGT00410000025802.g.a #29	ENSGT00730000111022	ENSGT00950000182808.b.b #30	ENSGT00950000183004.a.a.a.b #31	ENSGT00530000063435.a #32	ENSGT00530000063808.a #33
Long-tailed chinchilla	MODERN SPECIES	287	ENSCLAG00000017457	IKBKG (ENSCLAG00000003721) #33	G6PD (ENSCLAG00000003284) #32	FAM3A (ENSCLAG00000002528) #31	SLC10A3 (ENSCLAG00000002307) #30	UBL4A (ENSCLAG00000002161)	LAGE3 (ENSCLAG00000002127) #29	PLXNA3 (ENSCLAG00000001910) #28	ENSCLAG00000002733 ##27	GDI1 (ENSCLAG00000002425) #26	ATP6AP1 (ENSCLAG00000002132) #25	TAFAZZIN (ENSCLAG00000010970) #24	DNASE1L1 (ENSCLAG00000003494)	ENSCLAG00000003108	FLNA (ENSCLAG00000003106) #21	EMD (ENSCLAG00000002874) #22	TKTL1 (ENSCLAG00000001825) #20	ENSCLAG00000001715 #18	MECP2 (ENSCLAG00000001648) #17	IRAK1 (ENSCLAG00000006192) #16	HCFC1 (ENSCLAG00000004175) #14	RENBP (ENSCLAG00000003810) #13	NAA10 (ENSCLAG00000001427) #12	ENSCLAG00000001334 #11	AVPR2 (ENSCLAG00000002650) #10	L1CAM (ENSCLAG00000001453) #9	PDZD4 (ENSCLAG00000002707) #8	SSR4 (ENSCLAG00000002670)	IDH3G (ENSCLAG00000002456)	SRPK3 (ENSCLAG00000001932)	PLXNB3 (ENSCLAG00000001828)
Degu	MODERN SPECIES	259	PDZD4 (ENSODEG00000005482) #8	L1CAM (ENSODEG00000005259) #9	ENSODEG00000005204	AVPR2 (ENSODEG00000005166) #10	ARHGAP4 (ENSODEG00000005124) #11	ENSODEG00000005100 #12	RENBP (ENSODEG00000005065) #13	HCFC1 (ENSODEG00000004823) #14	IRAK1 (ENSODEG00000004583) #16	MECP2 (ENSODEG00000004523) #17	ENSODEG00000004516	ENSODEG00000004473 #18	ENSODEG00000004454	TKTL1 (ENSODEG00000004431) #20	FLNA (ENSODEG00000004055) #21	EMD (ENSODEG00000003890) #22	ENSODEG00000003868	DNASE1L1 (ENSODEG00000003830)	TAFAZZIN (ENSODEG00000003758) #24	ATP6AP1 (ENSODEG00000003643) #25	GDI1 (ENSODEG00000006550) #26	ENSODEG00000006510 ##27	PLXNA3 (ENSODEG00000006368) #28	ENSODEG00000006315 #29	UBL4A (ENSODEG00000006287)	FAM3A (ENSODEG00000006189) #31	ENSODEG00000006077 #32	IKBKG (ENSODEG00000005911) #33