Theria	ANCESTRAL SPECIES	46	ENSGT00530000063435.a #34	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT00410000025802	ENSGT01050000244850.A.a #29	ENSGT00390000004735.C ##28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000003897.s.a ##23	ENSGT00950000182846.a.a.a.a.b ##24	ENSGT00390000003897.s.b #23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00940000154471.a.a	ENSGT00940000161969	ENSGT00940000162843 #19	ENSGT01030000234549.a.a.a.b #18	ENSGT00530000063687.b.b.b #17	ENSGT00940000160502 #16	ENSGT00390000011272	ENSGT00940000161383 #15	ENSGT00940000166196	ENSGT00390000013740 #14	ENSGT00550000074803 #13	ENSGT00390000016224.j.a	ENSGT00950000182824.a.b.b #12	ENSGT01050000244882.b.c.b #11	ENSGT00940000157506 #10
Eutheria	ANCESTRAL SPECIES	16	ENSGT01050000244815.B.a.a #35	ENSGT00530000063808.a #33	ENSGT00530000063435.a #34	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT00410000025802.g.a	ENSGT01050000244850.A.a #29	ENSGT00390000004735.C ##28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00940000162426 #20	ENSGT00940000162843 #19	ENSGT01030000234549.a.a.a.b #18	ENSGT00530000063687.b.b.b #17	ENSGT00940000160502 #16	ENSGT00390000011272	ENSGT00940000161383 #15	ENSGT00940000166196	ENSGT00390000013740 #14	ENSGT00550000074803 #13	ENSGT00950000182824.a.b.b #12	ENSGT01050000244882.b.c.b #11	ENSGT00940000157506 #10	ENSGT00950000183062.a.b #9	ENSGT00390000008992 #8
Boreoeutheria	ANCESTRAL SPECIES	11	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.h	ENSGT00940000159803
Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.h	ENSGT01030000238159
Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b	ENSGT01050000244815.B.a.a #35
Glires	ANCESTRAL SPECIES	10	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b	ENSGT01050000244815.B.a.a #35
Rodentia	ANCESTRAL SPECIES	10	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b	ENSGT01050000244815.B.a.a #35
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00950000182989.D.a.a.g.a #7	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT01050000244815.B.a.a #35	ENSGT00410000025802.g.b
Sciuridae	ANCESTRAL SPECIES	27	ENSGT00950000182989.D.a.a.g.a #7	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT01050000244815.B.a.a #35
Marmotini	ANCESTRAL SPECIES	83	ENSGT00950000182989.D.a.a.g.a #7	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A.e #28	ENSGT01050000244850.A.a #29	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT01050000244815.B.a.a #35
Marmotini_b	ANCESTRAL SPECIES	124	ENSGT00950000182989.D.a.a.g.a #7	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A.e #28	ENSGT01050000244850.A.a #29	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT01050000244815.B.a.a #35
Squirrel	MODERN SPECIES	409	IDH3G (ENSSTOG00000008261) #7	SSR4 (ENSSTOG00000008278) #8	PDZD4 (ENSSTOG00000021423) #9	L1CAM (ENSSTOG00000008316) #10	AVPR2 (ENSSTOG00000008352) #11	ARHGAP4 (ENSSTOG00000022503) #12	NAA10 (ENSSTOG00000010237) #13	RENBP (ENSSTOG00000010247) #14	HCFC1 (ENSSTOG00000029220) #15	IRAK1 (ENSSTOG00000007991) #16	MECP2 (ENSSTOG00000006094) #17	ENSSTOG00000024701 #18	TEX28 (ENSSTOG00000022078) #19	TKTL1 (ENSSTOG00000005014) #20	FLNA (ENSSTOG00000005036) #21	EMD (ENSSTOG00000014689) #22	ENSSTOG00000011857 #23	DNASE1L1 (ENSSTOG00000011867) #24	TAFAZZIN (ENSSTOG00000011873) #25	ATP6AP1 (ENSSTOG00000004401) #26	GDI1 (ENSSTOG00000004429) #27	ENSSTOG00000004448 #28	PLXNA3 (ENSSTOG00000003432) #29	UBL4A (ENSSTOG00000022150) #30	SLC10A3 (ENSSTOG00000026515) #31	FAM3A (ENSSTOG00000022234) #32	IKBKG (ENSSTOG00000011082) #33	G6PD (ENSSTOG00000021077) #34	ENSSTOG00000027400 #35
Arctic ground squirrel	MODERN SPECIES	823															FLNA (ENSUPAG00010000336) #21	EMD (ENSUPAG00010000276) #22	ENSUPAG00010000252 ##23	DNASE1L1 (ENSUPAG00010000232) #24	TAFAZZIN (ENSUPAG00010000055) #25	ATP6AP1 (ENSUPAG00010011086) #26	GDI1 (ENSUPAG00010011085) #27	ENSUPAG00010011078 #28	PLXNA3 (ENSUPAG00010011001) #29	ENSUPAG00010010993	ENSUPAG00010010991	SLC10A3 (ENSUPAG00010010974) #31	FAM3A (ENSUPAG00010010917) #32	IKBKG (ENSUPAG00010010819) #33	ENSUPAG00010010808	ENSUPAG00010010804 #35	ENSUPAG00010010787
Alpin marmot	MODERN SPECIES	136	IDH3G (ENSMMMG00000008193) #7	SSR4 (ENSMMMG00000008221) #8	PDZD4 (ENSMMMG00000008247) #9	L1CAM (ENSMMMG00000008292) #10	AVPR2 (ENSMMMG00000008488) #11	ARHGAP4 (ENSMMMG00000008497) #12	ENSMMMG00000009143 #13	RENBP (ENSMMMG00000009149) #14	HCFC1 (ENSMMMG00000009171) #15	IRAK1 (ENSMMMG00000009239) #16	MECP2 (ENSMMMG00000009970) #17	ENSMMMG00000010010 #18	TEX28 (ENSMMMG00000010023) #19	TKTL1 (ENSMMMG00000010036) #20	FLNA (ENSMMMG00000010080) #21	EMD (ENSMMMG00000014270) #22	ENSMMMG00000014279 #23	DNASE1L1 (ENSMMMG00000014299) #24	TAFAZZIN (ENSMMMG00000014302) #25	GDI1 (ENSMMMG00000014475) #27	FAM50A (ENSMMMG00000014490) #28	PLXNA3 (ENSMMMG00000014513) #29	UBL4A (ENSMMMG00000014537) #30	SLC10A3 (ENSMMMG00000014545) #31	FAM3A (ENSMMMG00000014550) #32	G6PD (ENSMMMG00000014645) #34	IKBKG (ENSMMMG00000014671) #33	ENSMMMG00000014778 #35
Eurasian red squirrel	MODERN SPECIES	156	ENSSVLG00005017218	IKBKG (ENSSVLG00005017293) #33	G6PD (ENSSVLG00005017520) #34	FAM3A (ENSSVLG00005017584) #32	SLC10A3 (ENSSVLG00005017774) #31	UBL4A (ENSSVLG00005017819) #30	LAGE3 (ENSSVLG00005017858)	PLXNA3 (ENSSVLG00005017881) #29	FAM50A (ENSSVLG00005017921) #28	GDI1 (ENSSVLG00005017962) #27	ATP6AP1 (ENSSVLG00005018016) #26	TAFAZZIN (ENSSVLG00005018196) #25	DNASE1L1 (ENSSVLG00005018343) #24	ENSSVLG00005018375 #23	FLNA (ENSSVLG00005018546) #21	EMD (ENSSVLG00005019520) #22	TKTL1 (ENSSVLG00005017318) #20	TEX28 (ENSSVLG00005017596) #19	ENSSVLG00005017738	ENSSVLG00005017793 #18	MECP2 (ENSSVLG00005017899) #17	ENSSVLG00005018093 #16	HCFC1 (ENSSVLG00005018524) #15	RENBP (ENSSVLG00005019023) #14	NAA10 (ENSSVLG00005019123) #13	ARHGAP4 (ENSSVLG00005019458) #12	ENSSVLG00005019536	AVPR2 (ENSSVLG00005019578) #11	PDZD4 (ENSSVLG00005019686) #9	SSR4 (ENSSVLG00005019816) #8	IDH3G (ENSSVLG00005019902) #7
Hystricomorpha	ANCESTRAL SPECIES	54	ENSGT00950000182989.D.a.a.g.a #7	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.B.a.a ##28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT01050000244815.B.a.a #35	ENSGT00940000159803
Hystricomorpha_a	ANCESTRAL SPECIES	61	ENSGT00950000182989.D.a.a.g.a #7	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.B.a.a ##28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT01050000244815.B.a.a #35	ENSGT00940000159803
Guinea pig	MODERN SPECIES	148	SRPK3 (ENSCPOG00000006881)	IDH3G (ENSCPOG00000006890) #7	SSR4 (ENSCPOG00000006898) #8	PDZD4 (ENSCPOG00000019482) #9	L1CAM (ENSCPOG00000005519) #10	AVPR2 (ENSCPOG00000012697) #11	ENSCPOG00000026143 #12	NAA10 (ENSCPOG00000011495) #13	ENSCPOG00000024784 #14	IRAK1 (ENSCPOG00000039151) #16	MECP2 (ENSCPOG00000012579) #17	ENSCPOG00000011198 #18	ENSCPOG00000021789 #19	TKTL1 (ENSCPOG00000011767) #20	FLNA (ENSCPOG00000002672) #21	EMD (ENSCPOG00000002642) #22	ENSCPOG00000002355 #23	DNASE1L1 (ENSCPOG00000005648) #24	TAFAZZIN (ENSCPOG00000020454) #25	ATP6AP1 (ENSCPOG00000005972) #26	GDI1 (ENSCPOG00000032738) #27	ENSCPOG00000005974 ##28	PLXNA3 (ENSCPOG00000011493) #29	ENSCPOG00000034445	UBL4A (ENSCPOG00000040690) #30	SLC10A3 (ENSCPOG00000007289) #31	FAM3A (ENSCPOG00000019367) #32	G6PD (ENSCPOG00000021395) #34	IKBKG (ENSCPOG00000021550) #33	ENSCPOG00000026136 #35	GAB3 (ENSCPOG00000002987)
Hystricomorpha_b	ANCESTRAL SPECIES	84	ENSGT00940000157877.b	ENSGT00950000182989.D.a.a.g.a #7	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.B.a.a ##28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33
Long-tailed chinchilla	MODERN SPECIES	287	ENSCLAG00000017457	IKBKG (ENSCLAG00000003721) #33	G6PD (ENSCLAG00000003284) #34	FAM3A (ENSCLAG00000002528) #32	SLC10A3 (ENSCLAG00000002307) #31	UBL4A (ENSCLAG00000002161) #30	LAGE3 (ENSCLAG00000002127)	PLXNA3 (ENSCLAG00000001910) #29	ENSCLAG00000002733 ##28	GDI1 (ENSCLAG00000002425) #27	ATP6AP1 (ENSCLAG00000002132) #26	TAFAZZIN (ENSCLAG00000010970) #25	DNASE1L1 (ENSCLAG00000003494) #24	ENSCLAG00000003108 ##23	FLNA (ENSCLAG00000003106) #21	EMD (ENSCLAG00000002874) #22	TKTL1 (ENSCLAG00000001825) #20	ENSCLAG00000001715 #18	MECP2 (ENSCLAG00000001648) #17	IRAK1 (ENSCLAG00000006192) #16	HCFC1 (ENSCLAG00000004175) #15	RENBP (ENSCLAG00000003810) #14	NAA10 (ENSCLAG00000001427) #13	ENSCLAG00000001334 #12	AVPR2 (ENSCLAG00000002650) #11	L1CAM (ENSCLAG00000001453) #10	PDZD4 (ENSCLAG00000002707) #9	SSR4 (ENSCLAG00000002670) #8	IDH3G (ENSCLAG00000002456) #7	SRPK3 (ENSCLAG00000001932)	PLXNB3 (ENSCLAG00000001828)
Degu	MODERN SPECIES	259	PDZD4 (ENSODEG00000005482) #9	L1CAM (ENSODEG00000005259) #10	ENSODEG00000005204	AVPR2 (ENSODEG00000005166) #11	ARHGAP4 (ENSODEG00000005124) #12	ENSODEG00000005100 #13	RENBP (ENSODEG00000005065) #14	HCFC1 (ENSODEG00000004823) #15	IRAK1 (ENSODEG00000004583) #16	MECP2 (ENSODEG00000004523) #17	ENSODEG00000004516	ENSODEG00000004473 #18	ENSODEG00000004454	TKTL1 (ENSODEG00000004431) #20	FLNA (ENSODEG00000004055) #21	EMD (ENSODEG00000003890) #22	ENSODEG00000003868 #23	DNASE1L1 (ENSODEG00000003830) #24	TAFAZZIN (ENSODEG00000003758) #25	ATP6AP1 (ENSODEG00000003643) #26	GDI1 (ENSODEG00000006550) #27	ENSODEG00000006510 ##28	PLXNA3 (ENSODEG00000006368) #29	ENSODEG00000006315	UBL4A (ENSODEG00000006287) #30	FAM3A (ENSODEG00000006189) #32	ENSODEG00000006077 #34	IKBKG (ENSODEG00000005911) #33
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b	ENSGT01050000244815.B.a.a #35
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b	ENSGT01050000244815.B.a.a #35
Muroidea	ANCESTRAL SPECIES	13	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b	ENSGT01050000244815.B.a.a #35
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.q.a	ENSGT01050000244815.B.a.a #35
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.q.a	ENSGT01100000263574.b.j
Cricetidae_B	ANCESTRAL SPECIES	28	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.q.a	ENSGT01100000263574.b.j
Northern American deer mouse	MODERN SPECIES	475	Idh3g (ENSPEMG00000011232) #7	Ssr4 (ENSPEMG00000008760) #8	Pdzd4 (ENSPEMG00000008494) #9	L1cam (ENSPEMG00000011592) #10	Avpr2 (ENSPEMG00000008325) #11	Arhgap4 (ENSPEMG00000019112) #12	ENSPEMG00000010870 #14	Hcfc1 (ENSPEMG00000011837) #15	Irak1 (ENSPEMG00000001469) #16	ENSPEMG00000025112	Mecp2 (ENSPEMG00000015115) #17	Opn1mw (ENSPEMG00000010994) #18	Tex28 (ENSPEMG00000009005) #19	Tktl1 (ENSPEMG00000012644) #20	Flna (ENSPEMG00000009562) #21	Emd (ENSPEMG00000012081) #22	ENSPEMG00000015703 ##23	Dnase1l1 (ENSPEMG00000013008) #24	Tafazzin (ENSPEMG00000007822) #25	Atp6ap1 (ENSPEMG00000009724) #26	Gdi1 (ENSPEMG00000010952) #27	Fam50a (ENSPEMG00000001727) #28	Plxna3 (ENSPEMG00000012781) #29	Lage3 (ENSPEMG00000011229)	Ubl4a (ENSPEMG00000027881) #30	Fam3a (ENSPEMG00000004757) #32	ENSPEMG00000017532 #34	Ikbkg (ENSPEMG00000031110) #33	ENSPEMG00000029875	ENSPEMG00000027888	ENSPEMG00000026245
Prairie vole	MODERN SPECIES	168													ENSMOCG00000017630 #18	Tex28 (ENSMOCG00000011491) #19	Flna (ENSMOCG00000007826) #21	Emd (ENSMOCG00000003977) #22	ENSMOCG00000013831 #23	Dnase1l1 (ENSMOCG00000017402) #24	Tafazzin (ENSMOCG00000010108) #25	Atp6ap1 (ENSMOCG00000001026) #26	Gdi1 (ENSMOCG00000006575) #27	Fam50a (ENSMOCG00000015890) #28	Plxna3 (ENSMOCG00000002375) #29	ENSMOCG00000002473	Ubl4a (ENSMOCG00000000785) #30	Slc10a3 (ENSMOCG00000008789) #31	Fam3a (ENSMOCG00000016025) #32	ENSMOCG00000015421 #34	Ikbkg (ENSMOCG00000011244) #33	ENSMOCG00000017711	Or7r1 (ENSMOCG00000002349) #35
Cricetinae	ANCESTRAL SPECIES	46	ENSGT01020000230394.e.a.a.b.a.b	ENSGT00940000157877.b	ENSGT00950000182989.D.a.a.g.a #7	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT01050000244815.B.a.a #35	ENSGT00410000025802.g.b.q.a
Chinese hamster chok1gshd	MODERN SPECIES	16	Idh3g (ENSCGRG00001012756) #7	Ssr4 (ENSCGRG00001019369) #8	Pdzd4 (ENSCGRG00001012732) #9	L1cam (ENSCGRG00001020541) #10	Avpr2 (ENSCGRG00001010799) #11	Arhgap4 (ENSCGRG00001023232) #12	Naa10 (ENSCGRG00001012595) #13	Hcfc1 (ENSCGRG00001019535) #15	Irak1 (ENSCGRG00001013928) #16	ENSCGRG00001022957	Mecp2 (ENSCGRG00001017650) #17	Opn1mw (ENSCGRG00001024157) #18	Tex28 (ENSCGRG00001014288) #19	ENSCGRG00001010950	Flna (ENSCGRG00001013154) #21	Emd (ENSCGRG00001023962) #22	ENSCGRG00001008387 #23	DNASE1L1 (ENSCGRG00001019882) #24	TAZ (ENSCGRG00001016189) #25	Atp6ap1 (ENSCGRG00001015351) #26	Gdi1 (ENSCGRG00001020747) #27	Fam50a (ENSCGRG00001022147) #28	Plxna3 (ENSCGRG00001018950) #29	Lage3 (ENSCGRG00001006943)	Ubl4a (ENSCGRG00001024649) #30	Fam3a (ENSCGRG00001017590) #32	G6PDH (ENSCGRG00001009805) #34	Ikbkg (ENSCGRG00001023852) #33	Or7r1 (ENSCGRG00001002331) #35	ENSCGRG00001018213	ENSCGRG00001000852
Golden Hamster	MODERN SPECIES	857	Abcd1 (ENSMAUG00000020103)	Plxnb3 (ENSMAUG00000005458)	Srpk3 (ENSMAUG00000009935)	Idh3g (ENSMAUG00000000657) #7	ENSMAUG00000015090 #8	Pdzd4 (ENSMAUG00000000466) #9	L1cam (ENSMAUG00000008575) #10	Avpr2 (ENSMAUG00000001098) #11	Arhgap4 (ENSMAUG00000020011) #12	Naa10 (ENSMAUG00000019021) #13	Hcfc1 (ENSMAUG00000018495) #15	Irak1 (ENSMAUG00000002430) #16	Mecp2 (ENSMAUG00000018195) #17	Opn1mw (ENSMAUG00000017549) #18	Tex28 (ENSMAUG00000011775) #19	Emd (ENSMAUG00000016655) #22	ENSMAUG00000013615 #23	Dnase1l1 (ENSMAUG00000005714) #24	Tafazzin (ENSMAUG00000001836) #25	Atp6ap1 (ENSMAUG00000014514) #26	Gdi1 (ENSMAUG00000001476) #27	Fam50a (ENSMAUG00000020359) #28	Plxna3 (ENSMAUG00000019645) #29	Lage3 (ENSMAUG00000021750)	Ubl4a (ENSMAUG00000019612) #30	Slc10a3 (ENSMAUG00000005496) #31	Fam3a (ENSMAUG00000009961) #32	ENSMAUG00000008547 #34	Ikbkg (ENSMAUG00000008491) #33
Murinae	ANCESTRAL SPECIES	14	ENSGT00950000182989.D.a.a.g.a #7	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.q.a	ENSGT01050000244815.B.a.a #35
Mus	ANCESTRAL SPECIES	9	ENSGT00950000182989.D.a.a.g.a #7	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a.o #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.q.a	ENSGT01050000244815.B.a.a #35
Mus_A	ANCESTRAL SPECIES	15	ENSGT00950000182989.D.a.a.g.a #7	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a.o #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.q.a	ENSGT01050000244815.B.a.a #35
Mus_B	ANCESTRAL SPECIES	14	ENSGT00950000182989.D.a.a.g.a #7	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a.o #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.q.a	ENSGT01050000244815.B.a.a #35
Mouse	MODERN SPECIES	37	Idh3g (ENSMUSG00000002010) #7	Ssr4 (ENSMUSG00000002014) #8	Pdzd4 (ENSMUSG00000002006) #9	L1cam (ENSMUSG00000031391) #10	Arhgap4 (ENSMUSG00000031389) #12	Avpr2 (ENSMUSG00000031390) #11	Naa10 (ENSMUSG00000031388) #13	Renbp (ENSMUSG00000031387) #14	Hcfc1 (ENSMUSG00000031386) #15	Irak1 (ENSMUSG00000031392) #16	Mecp2 (ENSMUSG00000031393) #17	Opn1mw (ENSMUSG00000031394) #18	Tex28 (ENSMUSG00000062564) #19	Tktl1 (ENSMUSG00000031397) #20	Flna (ENSMUSG00000031328) #21	Emd (ENSMUSG00000001964) #22	Rpl10 (ENSMUSG00000008682) ##23	Dnase1l1 (ENSMUSG00000019088) #24	Tafazzin (ENSMUSG00000009995) #25	Atp6ap1 (ENSMUSG00000019087) #26	Gdi1 (ENSMUSG00000015291) #27	Fam50a (ENSMUSG00000001962) #28	Plxna3 (ENSMUSG00000031398) #29	Lage3 (ENSMUSG00000015289)	Ubl4a (ENSMUSG00000015290) #30	Slc10a3 (ENSMUSG00000032806) #31	Fam3a (ENSMUSG00000031399) #32	Ikbkg (ENSMUSG00000004221) #33	G6pdx (ENSMUSG00000031400) #34	Ctag2l1 (ENSMUSG00000079536)	Or7r1 (ENSMUSG00000043715) #35
Mus_C	ANCESTRAL SPECIES	27	ENSGT00950000182989.D.a.a.g.a #7	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a.o #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.q.a	ENSGT01050000244815.B.a.a #35
spretus	MODERN SPECIES	19	Idh3g (MGP_SPRETEiJ_G0034315) #7	Ssr4 (MGP_SPRETEiJ_G0034316) #8	Pdzd4 (MGP_SPRETEiJ_G0034317) #9	L1cam (MGP_SPRETEiJ_G0034318) #10	Arhgap4 (MGP_SPRETEiJ_G0034319) #12	Avpr2 (MGP_SPRETEiJ_G0034320) #11	Naa10 (MGP_SPRETEiJ_G0034321) #13	Renbp (MGP_SPRETEiJ_G0034322) #14	Hcfc1 (MGP_SPRETEiJ_G0034323) #15	Irak1 (MGP_SPRETEiJ_G0034324) #16	Mecp2 (MGP_SPRETEiJ_G0034325) #17	Opn1mw (MGP_SPRETEiJ_G0034326) #18	Tex28 (MGP_SPRETEiJ_G0034327) #19	Tktl1 (MGP_SPRETEiJ_G0034328) #20	Flna (MGP_SPRETEiJ_G0034329) #21	Emd (MGP_SPRETEiJ_G0034330) #22	MGP_SPRETEiJ_G0034331 #23	Dnase1l1 (MGP_SPRETEiJ_G0034332) #24	Tafazzin (MGP_SPRETEiJ_G0034333) #25	Atp6ap1 (MGP_SPRETEiJ_G0034334) #26	Gdi1 (MGP_SPRETEiJ_G0034335) #27	Fam50a (MGP_SPRETEiJ_G0034336) #28	Plxna3 (MGP_SPRETEiJ_G0034337) #29	Lage3 (MGP_SPRETEiJ_G0034338)	Ubl4a (MGP_SPRETEiJ_G0034339) #30	Slc10a3 (MGP_SPRETEiJ_G0034340) #31	Fam3a (MGP_SPRETEiJ_G0034341) #32	Ikbkg (MGP_SPRETEiJ_G0034342) #33	G6pdx (MGP_SPRETEiJ_G0034343) #34	MGP_SPRETEiJ_G0034344	Or7r1 (MGP_SPRETEiJ_G0034345) #35
Steppe mouse	MODERN SPECIES	2038																Emd (ENSMSIG00000013919) #22	ENSMSIG00000014127 #21	Tktl1 (ENSMSIG00000014148) #20	Tex28 (ENSMSIG00000014172) #19	Opn1mw (ENSMSIG00000014183) #18	ENSMSIG00000014223
Ryukyu mouse	MODERN SPECIES	19	Idh3g (MGP_CAROLIEiJ_G0033160) #7	Ssr4 (MGP_CAROLIEiJ_G0033161) #8	Pdzd4 (MGP_CAROLIEiJ_G0033162) #9	L1cam (MGP_CAROLIEiJ_G0033163) #10	Arhgap4 (MGP_CAROLIEiJ_G0033164) #12	Avpr2 (MGP_CAROLIEiJ_G0033165) #11	Naa10 (MGP_CAROLIEiJ_G0033166) #13	Renbp (MGP_CAROLIEiJ_G0033167) #14	Hcfc1 (MGP_CAROLIEiJ_G0033168) #15	Irak1 (MGP_CAROLIEiJ_G0033169) #16	Mecp2 (MGP_CAROLIEiJ_G0033170) #17	Opn1mw (MGP_CAROLIEiJ_G0033171) #18	Tex28 (MGP_CAROLIEiJ_G0033172) #19	Tktl1 (MGP_CAROLIEiJ_G0033173) #20	Flna (MGP_CAROLIEiJ_G0033174) #21	Emd (MGP_CAROLIEiJ_G0033175) #22	MGP_CAROLIEiJ_G0033176 ##23	Dnase1l1 (MGP_CAROLIEiJ_G0033177) #24	Tafazzin (MGP_CAROLIEiJ_G0033178) #25	Atp6ap1 (MGP_CAROLIEiJ_G0033179) #26	Gdi1 (MGP_CAROLIEiJ_G0033180) #27	Fam50a (MGP_CAROLIEiJ_G0033181) #28	Plxna3 (MGP_CAROLIEiJ_G0033182) #29	Lage3 (MGP_CAROLIEiJ_G0033183)	Ubl4a (MGP_CAROLIEiJ_G0033184) #30	Slc10a3 (MGP_CAROLIEiJ_G0033185) #31	Fam3a (MGP_CAROLIEiJ_G0033186) #32	Ikbkg (MGP_CAROLIEiJ_G0033187) #33	G6pdx (MGP_CAROLIEiJ_G0033188) #34	Or7r1 (MGP_CAROLIEiJ_G0033189) #35	Or13ae2 (MGP_CAROLIEiJ_G0033190)
Shrew mouse	MODERN SPECIES	23	Idh3g (MGP_PahariEiJ_G0031703) #7	Ssr4 (MGP_PahariEiJ_G0031704) #8	Pdzd4 (MGP_PahariEiJ_G0031705) #9	L1cam (MGP_PahariEiJ_G0031706) #10	Arhgap4 (MGP_PahariEiJ_G0031707) #12	Avpr2 (MGP_PahariEiJ_G0031708) #11	Naa10 (MGP_PahariEiJ_G0031709) #13	Renbp (MGP_PahariEiJ_G0031710) #14	Hcfc1 (MGP_PahariEiJ_G0031711) #15	Irak1 (MGP_PahariEiJ_G0031712) #16	Mecp2 (MGP_PahariEiJ_G0031713) #17	Opn1mw (MGP_PahariEiJ_G0031714) #18	Tex28 (MGP_PahariEiJ_G0031715) #19	MGP_PahariEiJ_G0031716 #20	Flna (MGP_PahariEiJ_G0031717) #21	Emd (MGP_PahariEiJ_G0031718) #22	MGP_PahariEiJ_G0031719 ##23	Dnase1l1 (MGP_PahariEiJ_G0031720) #24	Tafazzin (MGP_PahariEiJ_G0031721) #25	Atp6ap1 (MGP_PahariEiJ_G0031722) #26	Gdi1 (MGP_PahariEiJ_G0031723) #27	Fam50a (MGP_PahariEiJ_G0031724) #28	Plxna3 (MGP_PahariEiJ_G0031725) #29	Lage3 (MGP_PahariEiJ_G0031726)	Ubl4a (MGP_PahariEiJ_G0031727) #30	Slc10a3 (MGP_PahariEiJ_G0031728) #31	Fam3a (MGP_PahariEiJ_G0031729) #32	Ikbkg (MGP_PahariEiJ_G0031730) #33	G6pdx (MGP_PahariEiJ_G0031731) #34	Or7r1 (MGP_PahariEiJ_G0031732) #35	Or13ae2 (MGP_PahariEiJ_G0031733)
Rat	MODERN SPECIES	46	Idh3g (ENSRNOG00000055572) #7	Ssr4 (ENSRNOG00000053172) #8	Pdzd4 (ENSRNOG00000056174) #9	L1cam (ENSRNOG00000061230) #10	Arhgap4 (ENSRNOG00000058545) #12	Avpr2 (ENSRNOG00000059862) #11	Naa10 (ENSRNOG00000060063) #13	Renbp (ENSRNOG00000054765) #14	Hcfc1 (ENSRNOG00000051948) #15	Irak1 (ENSRNOG00000060869) #16	Mecp2 (ENSRNOG00000056659) #17	Opn1mw (ENSRNOG00000051529) #18	Tex28 (ENSRNOG00000051438) #19	Tktl1 (ENSRNOG00000055557) #20	Flna (ENSRNOG00000054890) #21	Emd (ENSRNOG00000058882) #22	Rpl10 (ENSRNOG00000056765) #23	Dnase1l1 (ENSRNOG00000055641) #24	ENSRNOG00000063225	Tafazzin (ENSRNOG00000053023) #25	Atp6ap1 (ENSRNOG00000054352) #26	Gdi1 (ENSRNOG00000056870) #27	Fam50a (ENSRNOG00000058439) #28	Plxna3 (ENSRNOG00000060464) #29	Lage3 (ENSRNOG00000053456)	Slc10a3 (ENSRNOG00000060580) #31	Ubl4a (ENSRNOG00000053061) #30	Fam3a (ENSRNOG00000060623) #32	G6pd (ENSRNOG00000056728) #34	Ikbkg (ENSRNOG00000060936) #33	LOC690348 (ENSRNOG00000060839)
Upper Galilee mountains blind mole rat	MODERN SPECIES	660	Srpk3 (ENSNGAG00000021121)	Idh3g (ENSNGAG00000017889) #7	ENSNGAG00000015787 #8	Pdzd4 (ENSNGAG00000009443) #9	L1cam (ENSNGAG00000013550) #10	Avpr2 (ENSNGAG00000009849) #11	Arhgap4 (ENSNGAG00000015413) #12	Naa10 (ENSNGAG00000020303) #13	Renbp (ENSNGAG00000021686) #14	Hcfc1 (ENSNGAG00000013083) #15	Irak1 (ENSNGAG00000011647) #16	Mecp2 (ENSNGAG00000009171) #17	Opn1mw (ENSNGAG00000011604) #18	Tex28 (ENSNGAG00000023701) #19	Flna (ENSNGAG00000013524) #21	Emd (ENSNGAG00000018770) #22	ENSNGAG00000023746 #23	Dnase1l1 (ENSNGAG00000024155) #24	Tafazzin (ENSNGAG00000008680) #25	Atp6ap1 (ENSNGAG00000021512) #26	Gdi1 (ENSNGAG00000023333) #27	Fam50a (ENSNGAG00000021495) #28	ENSNGAG00000012608	Plxna3 (ENSNGAG00000022548) #29	Lage3 (ENSNGAG00000023293)	Ubl4a (ENSNGAG00000023782) #30	Slc10a3 (ENSNGAG00000007975) #31	Fam3a (ENSNGAG00000016683) #32	ENSNGAG00000020668 #34	Ikbkg (ENSNGAG00000019535) #33	ENSNGAG00000024034
Lesser Egyptian jerboa	MODERN SPECIES	224	Ssr4 (ENSJJAG00000017842) #8	Pdzd4 (ENSJJAG00000018534) #9	L1cam (ENSJJAG00000021077) #10	Avpr2 (ENSJJAG00000018314) #11	Arhgap4 (ENSJJAG00000021798) #12	Naa10 (ENSJJAG00000023398) #13	Renbp (ENSJJAG00000010739) #14	Hcfc1 (ENSJJAG00000012815) #15	Irak1 (ENSJJAG00000013849) #16	Mecp2 (ENSJJAG00000022463) #17	ENSJJAG00000022596	Opn1mw (ENSJJAG00000022699) #18	Tex28 (ENSJJAG00000019769) #19	Tktl1 (ENSJJAG00000010328) #20	Flna (ENSJJAG00000015450) #21	Emd (ENSJJAG00000019656) #22	ENSJJAG00000014235 ##23	Tafazzin (ENSJJAG00000015233) #25	ENSJJAG00000019557 #26	Gdi1 (ENSJJAG00000008815) #27	Fam50a (ENSJJAG00000010389) #28	Plxna3 (ENSJJAG00000020257) #29	Lage3 (ENSJJAG00000022478)	ENSJJAG00000022788 #30	Slc10a3 (ENSJJAG00000022929) #31	Fam3a (ENSJJAG00000023156) #32	ENSJJAG00000023806 #34	Ikbkg (ENSJJAG00000023964) #33
Kangaroo rat	MODERN SPECIES	526	Gab3 (ENSDORG00000006809)	ENSDORG00000000625	Ikbkg (ENSDORG00000028140) #33	ENSDORG00000012731 #34	Fam3a (ENSDORG00000025173) #32	Slc10a3 (ENSDORG00000005197) #31	Ubl4a (ENSDORG00000005196) #30	Lage3 (ENSDORG00000029875)	Plxna3 (ENSDORG00000000853) #29	Fam50a (ENSDORG00000008851) #28	Gdi1 (ENSDORG00000008848) #27	Atp6ap1 (ENSDORG00000008847) #26	Tafazzin (ENSDORG00000029677) #25	ENSDORG00000004369 #23	Flna (ENSDORG00000004370) #21	Emd (ENSDORG00000004375) #22	Tktl1 (ENSDORG00000013785) #20	Tex28 (ENSDORG00000010136) #19	Opn1mw (ENSDORG00000026454) #18	Mecp2 (ENSDORG00000014978) #17	Irak1 (ENSDORG00000013876) #16	Hcfc1 (ENSDORG00000002756) #15	Renbp (ENSDORG00000002755) #14	Naa10 (ENSDORG00000002753) #13	Arhgap4 (ENSDORG00000002750) #12	Avpr2 (ENSDORG00000002747) #11	L1cam (ENSDORG00000014093) #10	Pdzd4 (ENSDORG00000028112) #9	Ssr4 (ENSDORG00000006030) #8	Idh3g (ENSDORG00000006029) #7	Srpk3 (ENSDORG00000006026)
Lagomorpha	ANCESTRAL SPECIES	103	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33
Rabbit	MODERN SPECIES	549	ENSOCUG00000026260	PDZD4 (ENSOCUG00000017200) #9	L1CAM (ENSOCUG00000001102) #10	AVPR2 (ENSOCUG00000015695) #11	ARHGAP4 (ENSOCUG00000001107) #12	NAA10 (ENSOCUG00000001111) #13	RENBP (ENSOCUG00000025840) #14	HCFC1 (ENSOCUG00000001113) #15	TMEM187 (ENSOCUG00000001116)	IRAK1 (ENSOCUG00000025860) #16	MECP2 (ENSOCUG00000013147) #17	OPN1MW (ENSOCUG00000011466) #18	TEX28 (ENSOCUG00000021000) #19	TKTL1 (ENSOCUG00000000883) #20	FLNA (ENSOCUG00000000880) #21	EMD (ENSOCUG00000000882) #22	RA_m006_jsm7BED4f (ENSOCUG00000024511) #21	TAFAZZIN (ENSOCUG00000000885) #25	ENSOCUG00000017631 #26	GDI1 (ENSOCUG00000017639) #27	FAM50A (ENSOCUG00000017644) #28	PLXNA3 (ENSOCUG00000015623) #29	LAGE3 (ENSOCUG00000028990)	SLC10A3 (ENSOCUG00000022433) #31	FAM3A (ENSOCUG00000015663) #32	G6PD (ENSOCUG00000007866) #34	IKBKG (ENSOCUG00000007873) #33
Tree shrew	MODERN SPECIES	5111														ENSTBEG00000011020 #20	FLNA (ENSTBEG00000011283) #21	EMD (ENSTBEG00000012614) #22
Primates	ANCESTRAL SPECIES	23	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.h	ENSGT00940000159803
Haplorrhini	ANCESTRAL SPECIES	33	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.h	ENSGT00940000159803
Simiiformes	ANCESTRAL SPECIES	9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00910000147052	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.h.a	ENSGT00410000025802.h.b
Platyrrhini	ANCESTRAL SPECIES	42	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00910000147052	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426.a #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b.n #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.h.b	ENSGT00940000159803
Cebidae	ANCESTRAL SPECIES	27	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00910000147052	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426.a #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b.n #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.h.b	ENSGT00940000159803
Marmoset	MODERN SPECIES	78	PDZD4 (ENSCJAG00000011185) #9	SSR4 (ENSCJAG00000011167) #8	ENSCJAG00000074256	ENSCJAG00000022809	L1CAM (ENSCJAG00000011023) #10	ARHGAP4 (ENSCJAG00000011008) #12	AVPR2 (ENSCJAG00000011022) #11	NAA10 (ENSCJAG00000014506) #13	RENBP (ENSCJAG00000014500) #14	IRAK1 (ENSCJAG00000014452) #16	MECP2 (ENSCJAG00000016796) #17	ENSCJAG00000014412 #18	TEX28 (ENSCJAG00000042631) #19	TKTL1 (ENSCJAG00000014368) #20	FLNA (ENSCJAG00000034881) #21	EMD (ENSCJAG00000011853) #22	ENSCJAG00000011822 #23	DNASE1L1 (ENSCJAG00000011800) #24	ENSCJAG00000016995 #25	ATP6AP1 (ENSCJAG00000040642) #26	GDI1 (ENSCJAG00000016910) #27	FAM50A (ENSCJAG00000063509) #28	PLXNA3 (ENSCJAG00000016816) #29	LAGE3 (ENSCJAG00000041329)	UBL4A (ENSCJAG00000074416) #30	SLC10A3 (ENSCJAG00000077479) #31	FAM3A (ENSCJAG00000016787) #32	G6PD (ENSCJAG00000016775) #34	IKBKG (ENSCJAG00000016764) #33	GAB3 (ENSCJAG00000016753)	ENSCJAG00000082602
Cebidae_a	ANCESTRAL SPECIES	78	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00910000147052	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426.a #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b.n #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.h.b	ENSGT00940000159803
Bolivian squirrel monkey	MODERN SPECIES	236	PDZD4 (ENSSBOG00000033217) #9	L1CAM (ENSSBOG00000033301) #10	AVPR2 (ENSSBOG00000031595) #11	ARHGAP4 (ENSSBOG00000023946) #12	ENSSBOG00000020071 #13	RENBP (ENSSBOG00000034728) #14	HCFC1 (ENSSBOG00000034222) #15	IRAK1 (ENSSBOG00000018599) #16	ENSSBOG00000017747	MECP2 (ENSSBOG00000024999) #17	ENSSBOG00000025722	ENSSBOG00000022236 #18	TEX28 (ENSSBOG00000035728) #19	TKTL1 (ENSSBOG00000020176) #20	FLNA (ENSSBOG00000035541) #21	EMD (ENSSBOG00000027560) #22	ENSSBOG00000025724 #23	DNASE1L1 (ENSSBOG00000028977) #24	ENSSBOG00000033124	TAFAZZIN (ENSSBOG00000029961) #25	ATP6AP1 (ENSSBOG00000027327) #26	GDI1 (ENSSBOG00000021247) #27	FAM50A (ENSSBOG00000029861) #28	PLXNA3 (ENSSBOG00000034877) #29	LAGE3 (ENSSBOG00000024470)	UBL4A (ENSSBOG00000030369) #30	SLC10A3 (ENSSBOG00000027728) #31	FAM3A (ENSSBOG00000030279) #32	G6PD (ENSSBOG00000003239) #34	IKBKG (ENSSBOG00000033453) #33	ENSSBOG00000031845
Capuchin	MODERN SPECIES	996															FLNA (ENSCCAG00000027099) #21	EMD (ENSCCAG00000025612) #22
Mas night monkey	MODERN SPECIES	233															ENSANAG00000029089 #21	EMD (ENSANAG00000027129) #22
Catarrhini	ANCESTRAL SPECIES	12	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00910000147052	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b.e.a ##23	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a.m	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00390000002566
Cercopithecidae	ANCESTRAL SPECIES	19	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00910000147052	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00390000002034.a #22
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	1888																ENSRBIG00000037040 #22	ENSRBIG00000039019 #21	ENSRBIG00000042996 #23	DNASE1L1 (ENSRBIG00000030074) #24	TAFAZZIN (ENSRBIG00000035066) #25	ATP6AP1 (ENSRBIG00000036700) #26	GDI1 (ENSRBIG00000042799) #27	FAM50A (ENSRBIG00000037965) #28	PLXNA3 (ENSRBIG00000035203) #29	ENSRBIG00000034128	UBL4A (ENSRBIG00000023877) #30	SLC10A3 (ENSRBIG00000034698) #31	FAM3A (ENSRBIG00000025198) #32	ENSRBIG00000028634	G6PD (ENSRBIG00000030157) #34	ENSRBIG00000029055
Black snub-nosed monkey	MODERN SPECIES	1734												ENSRBIG00000039036	TFPI2 (ENSRBIG00000038616)	GNG11 (ENSRBIG00000033832)	BET1 (ENSRBIG00000041820)	ENSRBIG00000033510 #22	COL1A2 (ENSRBIG00000012419)	CASD1 (ENSRBIG00000044797)	SGCE (ENSRBIG00000034473)	PEG10 (ENSRBIG00000013492)
Rhinopithecus	ANCESTRAL SPECIES	825															ENSGT00940000153588.b #21	ENSGT00390000002034.b #22	ENSGT00940000155223.b
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	1654																ENSRROG00000035453 #22	CA10 (ENSRROG00000035087)
Golden snub-nosed monkey	MODERN SPECIES	1184															FLNA (ENSRROG00000041445) #21	ENSRROG00000030056 #22
Black snub-nosed monkey	MODERN SPECIES	1926															ENSRBIG00000037461	ENSRBIG00000036169 #22	CA10 (ENSRBIG00000036304)
Cercopithecinae	ANCESTRAL SPECIES	13	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00910000147052	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00530000063808.a #33	ENSGT00910000147580	ENSGT00530000063435.a #34	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT00410000025802.g.a.m	ENSGT01050000244850.A.a #29	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00940000162426 #20	ENSGT00940000162843 #19	ENSGT01030000234549.a.a.a.b #18	ENSGT00530000063687.b.b.b #17	ENSGT00910000147052	ENSGT00910000146917	ENSGT00940000160502 #16	ENSGT00390000011272	ENSGT00940000161383 #15	ENSGT00390000013740 #14	ENSGT00550000074803 #13	ENSGT00950000182824.a.b.b #12	ENSGT01050000244882.b.c.b #11	ENSGT00940000157506 #10	ENSGT00950000183062.a.b #9
Macaca	ANCESTRAL SPECIES	13	ENSGT00390000002566	ENSGT00530000063808.a #33	ENSGT00530000063435.a #34	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT00410000025802.g.a.m	ENSGT01050000244850.A.a #29	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00940000162426 #20	ENSGT00940000162843 #19	ENSGT01030000234549.a.a.a.b #18	ENSGT00530000063687.b.b.b #17	ENSGT00910000147052	ENSGT00910000146917	ENSGT00940000160502 #16	ENSGT00390000011272	ENSGT00940000161383 #15	ENSGT00390000013740 #14	ENSGT00550000074803 #13	ENSGT00950000182824.a.b.b #12	ENSGT01050000244882.b.c.b #11	ENSGT00940000157506 #10	ENSGT00950000183062.a.b #9
Macaca_a	ANCESTRAL SPECIES	11	ENSGT00530000063808.a #33	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.b.b.b	ENSGT00530000063435.a #34	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT00410000025802.g.a.m	ENSGT01050000244850.A.a #29	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00940000162426 #20	ENSGT00940000162843 #19	ENSGT01030000234549.a.a.a.b #18	ENSGT00530000063687.b.b.b #17	ENSGT00940000160502 #16	ENSGT00390000011272	ENSGT00940000161383 #15	ENSGT00390000013740 #14	ENSGT00550000074803 #13	ENSGT00950000182824.a.b.b #12	ENSGT01050000244882.b.c.b #11	ENSGT00940000157506 #10	ENSGT00950000183062.a.b #9	ENSGT00390000008992 #8	ENSGT00950000182989.D.a.a.g.a #7
Rhesus	MODERN SPECIES	327	ENSMMUG00000017405	ENSMMUG00000052573	G6PD (ENSMMUG00000017409) #34	FAM3A (ENSMMUG00000009012) #32	ENSMMUG00000063935	UBL4A (ENSMMUG00000009015) #31	LAGE3 (ENSMMUG00000040340)	PLXNA3 (ENSMMUG00000005507) #29	FAM50A (ENSMMUG00000005505) #28	GDI1 (ENSMMUG00000005502) #27	ATP6AP1 (ENSMMUG00000005501) #26	TAFAZZIN (ENSMMUG00000005498) #25	DNASE1L1 (ENSMMUG00000050873) #24	RPL10 (ENSMMUG00000005494) #23	FLNA (ENSMMUG00000013668) #21	EMD (ENSMMUG00000013678) #22	TKTL1 (ENSMMUG00000013667) #20	ENSMMUG00000050314 #19	ENSMMUG00000054361 #18	ENSMMUG00000055487 #19	ENSMMUG00000006166 #18	MECP2 (ENSMMUG00000018704) #17	IRAK1 (ENSMMUG00000018703) #16	TMEM187 (ENSMMUG00000005132)	HCFC1 (ENSMMUG00000000319) #15	RENBP (ENSMMUG00000000320) #14	NAA10 (ENSMMUG00000000322) #13	ARHGAP4 (ENSMMUG00000000323) #12	AVPR2 (ENSMMUG00000064945) #11	L1CAM (ENSMMUG00000003379) #10	PDZD4 (ENSMMUG00000003377) #9
Crab-eating macaque	MODERN SPECIES	175	ENSMFAG00000060522	IKBKG (ENSMFAG00000032230) #33	G6PD (ENSMFAG00000043207) #34	FAM3A (ENSMFAG00000041814) #32	SLC10A3 (ENSMFAG00000035989) #31	UBL4A (ENSMFAG00000000884) #30	LAGE3 (ENSMFAG00000004038)	PLXNA3 (ENSMFAG00000040837) #29	FAM50A (ENSMFAG00000021581) #28	GDI1 (ENSMFAG00000037198) #27	ATP6AP1 (ENSMFAG00000003619) #26	TAFAZZIN (ENSMFAG00000028691) #25	DNASE1L1 (ENSMFAG00000038787) #24	ENSMFAG00000040824 ##23	FLNA (ENSMFAG00000035790) #21	EMD (ENSMFAG00000045316) #22	TKTL1 (ENSMFAG00000031072) #20	ENSMFAG00000059786 #19	ENSMFAG00000039596 #19	ENSMFAG00000043960 #18	ENSMFAG00000049901	MECP2 (ENSMFAG00000033178) #17	IRAK1 (ENSMFAG00000042818) #16	HCFC1 (ENSMFAG00000035763) #15	RENBP (ENSMFAG00000044051) #14	NAA10 (ENSMFAG00000044161) #13	ARHGAP4 (ENSMFAG00000038733) #12	AVPR2 (ENSMFAG00000043716) #11	L1CAM (ENSMFAG00000030653) #10	PDZD4 (ENSMFAG00000031705) #9	SSR4 (ENSMFAG00000041921) #8
Pig-tailed macaque	MODERN SPECIES	403			G6PD (ENSMNEG00000031229) #34	FAM3A (ENSMNEG00000034258) #32	SLC10A3 (ENSMNEG00000042913) #31	UBL4A (ENSMNEG00000039513) #30	LAGE3 (ENSMNEG00000044542)	PLXNA3 (ENSMNEG00000029520) #29	FAM50A (ENSMNEG00000033378) #28	GDI1 (ENSMNEG00000029142) #27	ATP6AP1 (ENSMNEG00000040534) #26	TAFAZZIN (ENSMNEG00000038446) #25	DNASE1L1 (ENSMNEG00000032874) #24	ENSMNEG00000038094 #23	FLNA (ENSMNEG00000040468) #21	EMD (ENSMNEG00000042917) #22	TKTL1 (ENSMNEG00000045070) #20	TEX28 (ENSMNEG00000032132) #19
Cercopithecinae_b	ANCESTRAL SPECIES	51	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00910000147052	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000002566	ENSGT00530000063808.a #33	ENSGT00910000147580	ENSGT00530000063435.a #34	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT00410000025802.g.a.m	ENSGT01050000244850.A.a #29	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000003897.s.b.a.a.b.e.a ##23
Olive baboon	DUPLICATION
Olive baboon	MODERN SPECIES		MYOG (ENSPANG00000016865)	ADORA1 (ENSPANG00000011451)	MYBPH (ENSPANG00000010605)	CHI3L1 (ENSPANG00000014786)	CHIT1 (ENSPANG00000010633)	BTG2 (ENSPANG00000050972)	FMOD (ENSPANG00000007340)	ENSPANG00000050296	PRELP (ENSPANG00000007498)	OPTC (ENSPANG00000010634)	ENSPANG00000049902	ATP2B4 (ENSPANG00000012283)	LAX1 (ENSPANG00000010606)	ENSPANG00000011479	ENSPANG00000034978	ENSPANG00000012284 #22	ENSPANG00000047730	SOX13 (ENSPANG00000018736)	ETNK2 (ENSPANG00000020844)	REN (ENSPANG00000008713)	KISS1 (ENSPANG00000011606)	GOLT1A (ENSPANG00000014602)	ENSPANG00000049194	PLEKHA6 (ENSPANG00000011480)	PPP1R15B (ENSPANG00000018737)	PIK3C2B (ENSPANG00000012285)	MDM4 (ENSPANG00000008555)	ENSPANG00000045390	NFASC (ENSPANG00000007499)	CNTN2 (ENSPANG00000019892)	TMEM81 (ENSPANG00000023913)
Olive baboon	MODERN SPECIES	408																EMD (ENSPANG00000009306) #22
Cercopithecinae_d	ANCESTRAL SPECIES	141	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00910000147052	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22
Drill	MODERN SPECIES	1411	L1CAM (ENSMLEG00000036326) #10	AVPR2 (ENSMLEG00000042889) #11	ARHGAP4 (ENSMLEG00000038659) #12	NAA10 (ENSMLEG00000032424) #13	RENBP (ENSMLEG00000038487) #14	HCFC1 (ENSMLEG00000042451) #15	IRAK1 (ENSMLEG00000029062) #16	ENSMLEG00000009357	ENSMLEG00000027410	MECP2 (ENSMLEG00000032763) #17	ENSMLEG00000033448 #18	ENSMLEG00000028186 #19	ENSMLEG00000035487 #19	TKTL1 (ENSMLEG00000031544) #20	FLNA (ENSMLEG00000037979) #21	EMD (ENSMLEG00000038835) #22
Sooty mangabey	MODERN SPECIES	286	PDZD4 (ENSCATG00000043997) #9	L1CAM (ENSCATG00000041515) #10	AVPR2 (ENSCATG00000036647) #11	ARHGAP4 (ENSCATG00000042499) #12	NAA10 (ENSCATG00000038709) #13	RENBP (ENSCATG00000037009) #14	HCFC1 (ENSCATG00000022004) #15	IRAK1 (ENSCATG00000044264) #16	ENSCATG00000020302	ENSCATG00000018741	MECP2 (ENSCATG00000017038) #17	ENSCATG00000040717 #18	TEX28 (ENSCATG00000040472) #19	TKTL1 (ENSCATG00000033495) #20	FLNA (ENSCATG00000041295) #21	EMD (ENSCATG00000030421) #22
Vervet Monkey	MODERN SPECIES	203	SSR4 (ENSCSAG00000006874) #8	PDZD4 (ENSCSAG00000006871) #9	L1CAM (ENSCSAG00000006864) #10	AVPR2 (ENSCSAG00000006857) #11	ARHGAP4 (ENSCSAG00000006854) #12	NAA10 (ENSCSAG00000006823) #13	RENBP (ENSCSAG00000006814) #14	HCFC1 (ENSCSAG00000006809) #15	TMEM187 (ENSCSAG00000000523)	IRAK1 (ENSCSAG00000006804) #16	MECP2 (ENSCSAG00000006798) #17	ENSCSAG00000006792 #18	TEX28 (ENSCSAG00000006786) #19	TKTL1 (ENSCSAG00000006779) #20	FLNA (ENSCSAG00000006772) #21	EMD (ENSCSAG00000006760) #22	PLXNA3 (ENSCSAG00000006756) #29	ENSCSAG00000006746	UBL4A (ENSCSAG00000006742) #30	SLC10A3 (ENSCSAG00000000522) #31	FAM3A (ENSCSAG00000006738) #32	G6PD (ENSCSAG00000006732) #34	IKBKG (ENSCSAG00000006727) #33	ENSCSAG00000006721	GAB3 (ENSCSAG00000006717)	DKC1 (ENSCSAG00000006706)	MPP1 (ENSCSAG00000006698)	SMIM9 (ENSCSAG00000006693)	F8 (ENSCSAG00000006668)	ENSCSAG00000000521	ENSCSAG00000000520
Hominoidea	ANCESTRAL SPECIES	29	ENSGT00940000167437	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00910000147052	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b.e.a ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a.m	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00390000002566	ENSGT00410000025802.h.a.a
Hominidae	ANCESTRAL SPECIES	8	ENSGT00940000167437	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00910000147052	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b.f #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00390000003897.s.b.a.a.b.f ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a.m	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00390000002566
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00940000167437.b	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00910000147052	ENSGT00530000063687.b.b.b.e #17	ENSGT01030000234549.a.a.a.b.f #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b.e.a ##23	ENSGT00530000063687.b.b.b.f #17	ENSGT00390000003897.s.b.a.a.b.f ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a.m	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a.i #34	ENSGT00530000063808.a #33
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00940000167437.b	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00910000147052	ENSGT00530000063687.b.b.b.e #17	ENSGT01030000234549.a.a.a.b.f #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.b ##23	ENSGT00530000063687.b.b.b.f #17	ENSGT00390000003897.s.b.a.a.b.f ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a.m	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a.i #34	ENSGT00530000063808.a #33
Pan	ANCESTRAL SPECIES	6															ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00940000162426 #20	ENSGT00940000162843 #19	ENSGT01030000234549.a.a.a.b.f #18	ENSGT00530000063687.b.b.b.e #17	ENSGT00390000003897.s.b.a.a.b.f ##23	ENSGT00530000063687.b.b.b.f #17	ENSGT00910000147052	ENSGT00910000146917	ENSGT00940000160502 #16	ENSGT00390000011272	ENSGT00940000161383 #15	ENSGT00390000013740 #14	ENSGT00550000074803 #13	ENSGT00950000182824.a.b.b #12	ENSGT01050000244882.b.c.b #11
Chimpanzee	MODERN SPECIES	361															FLNA (ENSPTRG00000047682) #21	EMD (ENSPTRG00000049057) #22
Bonobo	MODERN SPECIES	299															ENSPPAG00000016208 #21	EMD (ENSPPAG00000027507) #22	ENSPPAG00000027923 #20
Human	MODERN SPECIES	1827	AVPR2 (ENSG00000126895) #11	ARHGAP4 (ENSG00000089820) #12	NAA10 (ENSG00000102030) #13	RENBP (ENSG00000102032) #14	HCFC1 (ENSG00000172534) #15	TMEM187 (ENSG00000177854)	IRAK1 (ENSG00000184216) #16	MECP2 (ENSG00000169057) #17	OPN1LW (ENSG00000102076) #18	OPN1MW (ENSG00000268221) #18	OPN1MW2 (ENSG00000166160) #18	OPN1MW3 (ENSG00000269433) #18	TEX28 (ENSG00000278057) #19	TKTL1 (ENSG00000007350) #20	FLNA (ENSG00000196924) #21	EMD (ENSG00000102119) #22	RPL10 (ENSG00000147403) ##23	DNASE1L1 (ENSG00000013563) #24	TAFAZZIN (ENSG00000102125) #25	ATP6AP1 (ENSG00000071553) #26	GDI1 (ENSG00000203879) #27	FAM50A (ENSG00000071859) #28	PLXNA3 (ENSG00000130827) #29	LAGE3 (ENSG00000196976)	UBL4A (ENSG00000102178) #30	SLC10A3 (ENSG00000126903) #31	FAM3A (ENSG00000071889) #32	G6PD (ENSG00000160211) #34	IKBKG (ENSG00000269335) #33	CTAG1A (ENSG00000268651)	CTAG1B (ENSG00000184033)
Gorilla	MODERN SPECIES	523	PDZD4 (ENSGGOG00000007937) #9	AVPR2 (ENSGGOG00000027387) #11	ARHGAP4 (ENSGGOG00000009770) #12	NAA10 (ENSGGOG00000009788) #13	RENBP (ENSGGOG00000009791) #14	HCFC1 (ENSGGOG00000009800) #15	TMEM187 (ENSGGOG00000008146)	IRAK1 (ENSGGOG00000000220) #16	ENSGGOG00000040298	ENSGGOG00000041822	MECP2 (ENSGGOG00000042467) #17	ENSGGOG00000004184 #18	TEX28 (ENSGGOG00000004188) #19	TKTL1 (ENSGGOG00000004191) #20	FLNA (ENSGGOG00000004199) #21	EMD (ENSGGOG00000009388) #22	ENSGGOG00000000131 ##23	DNASE1L1 (ENSGGOG00000000132) #24	TAZ (ENSGGOG00000011947) #25	ATP6AP1 (ENSGGOG00000013466) #26	GDI1 (ENSGGOG00000013474) #27	ENSGGOG00000013484 #28	PLXNA3 (ENSGGOG00000013493) #29	LAGE3 (ENSGGOG00000013507)	ENSGGOG00000013509 #30	SLC10A3 (ENSGGOG00000013520) #31	ENSGGOG00000005270 #32	G6PD (ENSGGOG00000004890) #34	IKBKG (ENSGGOG00000004896) #33	ENSGGOG00000025927	ENSGGOG00000040976
Orangutan	MODERN SPECIES	242	PDZD4 (ENSPPYG00000020857) #9	ENSPPYG00000031511	L1CAM (ENSPPYG00000020858) #10	ENSPPYG00000020859 #11	ARHGAP4 (ENSPPYG00000020860) #12	NAA10 (ENSPPYG00000020861) #13	RENBP (ENSPPYG00000020862) #14	HCFC1 (ENSPPYG00000020863) #15	TMEM187 (ENSPPYG00000020864)	IRAK1 (ENSPPYG00000020865) #16	MECP2 (ENSPPYG00000020866) #17	ENSPPYG00000020867 #18	TEX28 (ENSPPYG00000020869) #19	TKTL1 (ENSPPYG00000020870) #20	FLNA (ENSPPYG00000020871) #21	EMD (ENSPPYG00000020873) #22	RPL10 (ENSPPYG00000020874) #23	DNASE1L1 (ENSPPYG00000020875) #24	TAFAZZIN (ENSPPYG00000020876) #25	ATP6AP1 (ENSPPYG00000020877) #26	GDI1 (ENSPPYG00000020878) #27	FAM50A (ENSPPYG00000020879) #28	LAGE3 (ENSPPYG00000033247)	UBL4A (ENSPPYG00000020882) #30	SLC10A3 (ENSPPYG00000020883) #31	FAM3A (ENSPPYG00000020884) #32	G6PD (ENSPPYG00000020885) #34	IKBKG (ENSPPYG00000020886) #33	ENSPPYG00000020887	ENSPPYG00000020888	CTAG2 (ENSPPYG00000020890)
Gibbon	MODERN SPECIES	449	ENSNLEG00000034251	L1CAM (ENSNLEG00000013647) #10	ENSNLEG00000031864	AVPR2 (ENSNLEG00000013671) #11	ARHGAP4 (ENSNLEG00000013678) #12	NAA10 (ENSNLEG00000013724) #13	ENSNLEG00000013753 #14	HCFC1 (ENSNLEG00000026624) #15	TMEM187 (ENSNLEG00000013763)	ENSNLEG00000013767 #16	ENSNLEG00000013783 #17	ENSNLEG00000013787 #18	TEX28 (ENSNLEG00000013808) #19	TKTL1 (ENSNLEG00000013813) #20	FLNA (ENSNLEG00000013842) #21	EMD (ENSNLEG00000014117) #22	ENSNLEG00000028143 ##23	DNASE1L1 (ENSNLEG00000014149) #24	ENSNLEG00000014176 #25	ATP6AP1 (ENSNLEG00000014184) #26	GDI1 (ENSNLEG00000014222) #27	FAM50A (ENSNLEG00000014266) #28	PLXNA3 (ENSNLEG00000014273) #29	LAGE3 (ENSNLEG00000028687)	ENSNLEG00000014292 #30	SLC10A3 (ENSNLEG00000014293) #31	FAM3A (ENSNLEG00000030950) #32	ENSNLEG00000014300 #34	ENSNLEG00000014311 #33	GAB3 (ENSNLEG00000014318)	DKC1 (ENSNLEG00000014323)
Tarsier	MODERN SPECIES	1981																EMD (ENSTSYG00000030432) #22
Strepsirrhini	ANCESTRAL SPECIES	45	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33
Lemuriformes	ANCESTRAL SPECIES	60	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33
Mouse lemur	MODERN SPECIES	169	CMC4 (ENSMICG00000046262)	ENSMICG00000028940	ENSMICG00000047033	ENSMICG00000036428	ENSMICG00000046481	ENSMICG00000007052	F8 (ENSMICG00000029671)	ENSMICG00000037635	ENSMICG00000009653	ENSMICG00000048060	SMIM9 (ENSMICG00000043321)	MPP1 (ENSMICG00000002828)	ENSMICG00000002818	GAB3 (ENSMICG00000000264)	FLNA (ENSMICG00000004663) #21	EMD (ENSMICG00000004682) #22	ENSMICG00000033705 #23	DNASE1L1 (ENSMICG00000035242) #24	TAFAZZIN (ENSMICG00000030766) #25	ATP6AP1 (ENSMICG00000016405) #26	GDI1 (ENSMICG00000016418) #27	FAM50A (ENSMICG00000016428) #28	PLXNA3 (ENSMICG00000016439) #29	UBL4A (ENSMICG00000016459) #30	SLC10A3 (ENSMICG00000016468) #31	FAM3A (ENSMICG00000016470) #32	G6PD (ENSMICG00000016481) #34	IKBKG (ENSMICG00000035937) #33	ENSMICG00000031449	ENSMICG00000041505	ENSMICG00000028378
Lemuriformes_a	ANCESTRAL SPECIES	110	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33
Greater bamboo lemur	MODERN SPECIES	1118											ATP6AP1 (ENSPSMG00000015674) #26	TAFAZZIN (ENSPSMG00000015567) #25	DNASE1L1 (ENSPSMG00000015470) #24	ENSPSMG00000015404 ##23	FLNA (ENSPSMG00000014201) #21	ENSPSMG00000013348 #22
Coquerels sifaka	MODERN SPECIES	882	IDH3G (ENSPCOG00000023374) #7	SSR4 (ENSPCOG00000028866) #8	PDZD4 (ENSPCOG00000025180) #9	L1CAM (ENSPCOG00000010437) #10	AVPR2 (ENSPCOG00000008409) #11	ARHGAP4 (ENSPCOG00000009927) #12	ENSPCOG00000027024 #13	RENBP (ENSPCOG00000013414) #14	HCFC1 (ENSPCOG00000028065) #15	TMEM187 (ENSPCOG00000024026)	IRAK1 (ENSPCOG00000027349) #16	MECP2 (ENSPCOG00000024848) #17	ENSPCOG00000015866 #18	TKTL1 (ENSPCOG00000023105) #20	FLNA (ENSPCOG00000011059) #21	EMD (ENSPCOG00000015697) #22	ENSPCOG00000027122 #23	DNASE1L1 (ENSPCOG00000022635) #24	TAFAZZIN (ENSPCOG00000023186) #25	ATP6AP1 (ENSPCOG00000015508) #26	GDI1 (ENSPCOG00000015358) #27	ENSPCOG00000024061 #28	PLXNA3 (ENSPCOG00000015843) #29	LAGE3 (ENSPCOG00000027993)	UBL4A (ENSPCOG00000022735) #30	SLC10A3 (ENSPCOG00000025772) #31	FAM3A (ENSPCOG00000016869) #32	G6PD (ENSPCOG00000028512) #34	IKBKG (ENSPCOG00000026138) #33
Bushbaby	MODERN SPECIES	364	L1CAM (ENSOGAG00000015077) #10	AVPR2 (ENSOGAG00000030887) #11	ARHGAP4 (ENSOGAG00000015087) #12	NAA10 (ENSOGAG00000013263) #13	RENBP (ENSOGAG00000032778) #14	HCFC1 (ENSOGAG00000015100) #15	TMEM187 (ENSOGAG00000026922)	IRAK1 (ENSOGAG00000015108) #16	MECP2 (ENSOGAG00000015115) #17	ENSOGAG00000000897 #18	TEX28 (ENSOGAG00000000900) #19	TKTL1 (ENSOGAG00000000901) #20	ENSOGAG00000027452	ENSOGAG00000017264	FLNA (ENSOGAG00000015265) #21	EMD (ENSOGAG00000029264) #22	ENSOGAG00000000099 #23	DNASE1L1 (ENSOGAG00000000100) #24	TAFAZZIN (ENSOGAG00000008304) #25	ATP6AP1 (ENSOGAG00000008310) #26	GDI1 (ENSOGAG00000008317) #27	FAM50A (ENSOGAG00000008322) #28	PLXNA3 (ENSOGAG00000008330) #29	UBL4A (ENSOGAG00000030091) #30	SLC10A3 (ENSOGAG00000002637) #31	FAM3A (ENSOGAG00000016669) #32	G6PD (ENSOGAG00000033296) #34	IKBKG (ENSOGAG00000024983) #33	ENSOGAG00000031211	ENSOGAG00000027129	ENSOGAG00000032447 #35
Laurasiatheria	ANCESTRAL SPECIES	26	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.h	ENSGT00940000159803
Eulipotyphla	ANCESTRAL SPECIES	1880															ENSGT00940000153588.b #21	ENSGT00390000002034 #22
Hedgehog	MODERN SPECIES	8155															FLNA (ENSEEUG00000005817) #21	EMD (ENSEEUG00000006555) #22
Laurasiatheria_a	ANCESTRAL SPECIES	10	ENSGT00940000157506 #10	ENSGT00910000146500	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.h	ENSGT00940000159803
Artiodactyla	ANCESTRAL SPECIES	9	ENSGT00940000157506 #10	ENSGT00910000146500	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT01050000244815.B.a.a #35	ENSGT00410000025802.g.b
Suina	ANCESTRAL SPECIES	7	ENSGT01050000244815.B.a.a #35	ENSGT00530000063808.a #33	ENSGT00530000063435.a #34	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT00410000025802.g.a.f	ENSGT01050000244850.A.a #29	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00940000162426 #20	ENSGT00940000162843 #19	ENSGT01030000234549.a.a.a.b #18	ENSGT00530000063687.b.b.b #17	ENSGT00910000146917	ENSGT00940000160502 #16	ENSGT00390000011272	ENSGT00940000161383 #15	ENSGT00390000013740 #14	ENSGT00550000074803 #13	ENSGT00950000182824.a.b.b #12	ENSGT01050000244882.b.c.b #11	ENSGT00940000157506 #10	ENSGT00950000183062.a.b #9	ENSGT00390000008992 #8
Chacoan peccary	DUPLICATION
Chacoan peccary	MODERN SPECIES	34															ENSCWAG00000000527 #22	ENSCWAG00000000485 #22
Chacoan peccary	MODERN SPECIES	34															ENSCWAG00000000485 #22	ENSCWAG00000000527 #22
Pig	MODERN SPECIES	300	ENSSSCG00000012827 #35	IKBKG (ENSSSCG00000012825) #33	G6PD (ENSSSCG00000025108) #34	FAM3A (ENSSSCG00000028934) #32	SLC10A3 (ENSSSCG00000025766) #31	ENSSSCG00000057536 #30	ENSSSCG00000032959	PLXNA3 (ENSSSCG00000023483) #29	FAM50A (ENSSSCG00000025303) #28	GDI1 (ENSSSCG00000030421) #27	ATP6AP1 (ENSSSCG00000037310) #26	TAFAZZIN (ENSSSCG00000039655) #25	DNASE1L1 (ENSSSCG00000037032) #24	RPL10 (ENSSSCG00000035997) ##23	FLNA (ENSSSCG00000033299) #21	EMD (ENSSSCG00000037777) #22	TKTL1 (ENSSSCG00000029443) #20	TEX28 (ENSSSCG00000029513) #19	ENSSSCG00000029523 #18	MECP2 (ENSSSCG00000034742) #17	ENSSSCG00000059337	IRAK1 (ENSSSCG00000012795) #16	ENSSSCG00000050581	HCFC1 (ENSSSCG00000012793) #15	RENBP (ENSSSCG00000012792) #14	NAA10 (ENSSSCG00000012791) #13	ARHGAP4 (ENSSSCG00000012790) #12	AVPR2 (ENSSSCG00000012789) #11	L1CAM (ENSSSCG00000012787) #10	PDZD4 (ENSSSCG00000012785) #9	SSR4 (ENSSSCG00000012784) #8
Artiodactyla_a	ANCESTRAL SPECIES	9	ENSGT00940000157506 #10	ENSGT00910000146500	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00960000186859	ENSGT00410000025802.g.b
Camelidae	ANCESTRAL SPECIES	80	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00910000146917	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	204	PDZD4 (ENSCDRG00005008529) #9	L1CAM (ENSCDRG00005008678) #10	AVPR2 (ENSCDRG00005009433) #11	ARHGAP4 (ENSCDRG00005009571) #12	NAA10 (ENSCDRG00005010090) #13	RENBP (ENSCDRG00005010267) #14	HCFC1 (ENSCDRG00005010537) #15	TMEM187 (ENSCDRG00005011270)	IRAK1 (ENSCDRG00005011306) #16	ENSCDRG00005011350	MECP2 (ENSCDRG00005011374) #17	ENSCDRG00005011483 #18	TEX28 (ENSCDRG00005011542) #19	TKTL1 (ENSCDRG00005011584) #20	FLNA (ENSCDRG00005011684) #21	ENSCDRG00005011914 #22	ENSCDRG00005012077 ##23	DNASE1L1 (ENSCDRG00005012179) #24	TAZ (ENSCDRG00005012375) #25	ATP6AP1 (ENSCDRG00005012618) #26	GDI1 (ENSCDRG00005012702) #27	FAM50A (ENSCDRG00005012822) #28	LAGE3 (ENSCDRG00005015984)	SLC10A3 (ENSCDRG00005016014) #31	FAM3A (ENSCDRG00005016065) #32	G6PD (ENSCDRG00005016281) #34	IKBKG (ENSCDRG00005016363) #33	ENSCDRG00005016489	ENSCDRG00005016521	ENSCDRG00005016563	ENSCDRG00005016586
Arabian camel	MODERN SPECIES	35	NUDT19 (ENSCDRG00005020362)	RGS9BP (ENSCDRG00005020448)	ANKRD27 (ENSCDRG00005020575)	ENSCDRG00005020847	DPY19L3 (ENSCDRG00005021111)	ZNF507 (ENSCDRG00005021348)	ENSCDRG00005021461	TSHZ3 (ENSCDRG00005021492)	ZNF536 (ENSCDRG00005021564)	URI1 (ENSCDRG00005021639)	CCNE1 (ENSCDRG00005021725)	C19orf12 (ENSCDRG00005021821)	PLEKHF1 (ENSCDRG00005021848)	POP4 (ENSCDRG00005021850)	UQCRFS1 (ENSCDRG00005021891)	ENSCDRG00005021909 #22	SHCBP1 (ENSCDRG00005021912)	VPS35 (ENSCDRG00005021932)	ORC6 (ENSCDRG00005021936)	MYLK3 (ENSCDRG00005021954)	ENSCDRG00005022000	GPT2 (ENSCDRG00005022050)	DNAJA2 (ENSCDRG00005022140)	NETO2 (ENSCDRG00005022162)	ITFG1 (ENSCDRG00005022204)	PHKB (ENSCDRG00005022272)	ABCC12 (ENSCDRG00005022311)	ABCC11 (ENSCDRG00005000144)	LONP2 (ENSCDRG00005000407)	SIAH1 (ENSCDRG00005000466)	N4BP1 (ENSCDRG00005000490)
Artiodactyla_b	ANCESTRAL SPECIES	19	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT00910000146500	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00960000186859	ENSGT00410000025802.g.b
Cetacea	ANCESTRAL SPECIES	19	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT00910000146500	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A.n #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b	ENSGT00940000159803
Odontoceti	ANCESTRAL SPECIES	19	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT00910000146500	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A.m #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b	ENSGT00940000159803
Odontoceti_a	DUPLICATION
Odontoceti_a	ANCESTRAL SPECIES	21	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT00910000146500	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034.i #22	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A.m #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00960000186859	ENSGT00940000159803
Odontoceti_b	ANCESTRAL SPECIES	17	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034.i #22	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A.m #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00960000186859	ENSGT00940000159803
Monodontidae	ANCESTRAL SPECIES	19	ENSGT00940000157877.b	ENSGT00950000182989.D.a.a.g.a #7	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034.i #22	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A.m #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00960000186859	ENSGT00940000159803
Narwhal	MODERN SPECIES	309	SSR4 (ENSMMNG00015012518) #8	PDZD4 (ENSMMNG00015012532) #9	L1CAM (ENSMMNG00015012599) #10	AVPR2 (ENSMMNG00015012757) #11	ARHGAP4 (ENSMMNG00015012794) #12	RENBP (ENSMMNG00015012853) #14	HCFC1 (ENSMMNG00015012895) #15	TMEM187 (ENSMMNG00015012935)	IRAK1 (ENSMMNG00015012947) #16	MECP2 (ENSMMNG00015012982) #17	ENSMMNG00015013034 #18	ENSMMNG00015013048	ENSMMNG00015013056	TKTL1 (ENSMMNG00015013076) #20	FLNA (ENSMMNG00015013139) #21	ENSMMNG00015013213 #22	ENSMMNG00015013277 ##23	DNASE1L1 (ENSMMNG00015013295) #24	ENSMMNG00015013313 #25	ENSMMNG00015013329	ATP6AP1 (ENSMMNG00015013337) #26	GDI1 (ENSMMNG00015013359) #27	ENSMMNG00015013390 #28	PLXNA3 (ENSMMNG00015013425) #29	LAGE3 (ENSMMNG00015013456)	UBL4A (ENSMMNG00015013467) #30	SLC10A3 (ENSMMNG00015013481) #31	FAM3A (ENSMMNG00015013509) #32	G6PD (ENSMMNG00015013556) #34	IKBKG (ENSMMNG00015013582) #33
Beluga whale	MODERN SPECIES	139	SRPK3 (ENSDLEG00000009748)	IDH3G (ENSDLEG00000010539) #7	SSR4 (ENSDLEG00000010578) #8	PDZD4 (ENSDLEG00000010618) #9	L1CAM (ENSDLEG00000010633) #10	AVPR2 (ENSDLEG00000010715) #11	ARHGAP4 (ENSDLEG00000010745) #12	RENBP (ENSDLEG00000010782) #14	HCFC1 (ENSDLEG00000010826) #15	TMEM187 (ENSDLEG00000010884)	IRAK1 (ENSDLEG00000010892) #16	MECP2 (ENSDLEG00000010908) #17	ENSDLEG00000010916 #18	TKTL1 (ENSDLEG00000010974) #20	FLNA (ENSDLEG00000010999) #21	EMD (ENSDLEG00000011102) #22	ENSDLEG00000011125 ##23	DNASE1L1 (ENSDLEG00000011154) #24	TAZ (ENSDLEG00000011183) #25	ATP6AP1 (ENSDLEG00000011212) #26	GDI1 (ENSDLEG00000011245) #27	FAM50A (ENSDLEG00000011270) #28	PLXNA3 (ENSDLEG00000011331) #29	LAGE3 (ENSDLEG00000011398)	UBL4A (ENSDLEG00000011413) #31	FAM3A (ENSDLEG00000011447) #32	G6PD (ENSDLEG00000011468) #34	IKBKG (ENSDLEG00000011500) #33	ENSDLEG00000011523	ENSDLEG00000011545	GAB3 (ENSDLEG00000011559)
Vaquita	MODERN SPECIES	34	ARHGAP4 (ENSPSNG00000021560) #12	NAA10 (ENSPSNG00000021621) #13	ENSPSNG00000021660 #14	HCFC1 (ENSPSNG00000021713) #15	TMEM187 (ENSPSNG00000021804)	IRAK1 (ENSPSNG00000021819) #16	MECP2 (ENSPSNG00000021858) #17	ENSPSNG00000021893 #18	TEX28 (ENSPSNG00000021914) #19	ENSPSNG00000021927	ENSPSNG00000021942	ENSPSNG00000021951	ENSPSNG00000021965	TKTL1 (ENSPSNG00000021994) #20	FLNA (ENSPSNG00000022089) #21	ENSPSNG00000022266 #22	ENSPSNG00000022280 ##23	DNASE1L1 (ENSPSNG00000022297) #24	TAFAZZIN (ENSPSNG00000022306) #25	ATP6AP1 (ENSPSNG00000022314) #26	GDI1 (ENSPSNG00000022323) #27	ENSPSNG00000022331 #28	PLXNA3 (ENSPSNG00000022341) #29	ENSPSNG00000022354	SLC10A3 (ENSPSNG00000022364) #31	FAM3A (ENSPSNG00000022374) #32	G6PD (ENSPSNG00000022382) #34	IKBKG (ENSPSNG00000022395) #33	ENSPSNG00000022407	ENSPSNG00000022414	ENSPSNG00000022416
Dolphin	MODERN SPECIES	2778														TKTL1 (ENSTTRG00000013914) #20	FLNA (ENSTTRG00000013919) #21	EMD (ENSTTRG00000013924) #22
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00390000002034.j #22
Odontoceti_b	ANCESTRAL SPECIES																	ENSGT00390000002034.j #22
Monodontidae	ANCESTRAL SPECIES	30	ENSGT00940000159951.e.b.b.b	ENSGT00940000159407.n	ENSGT00390000008610.a.b.a.a.a	ENSGT00940000164207	ENSGT00940000157313	ENSGT00940000172088	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00390000009724.l.y.b	ENSGT00390000009113.a.a.k.b	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b	ENSGT00950000183163.b	ENSGT00390000002034.j #22	ENSGT01010000222890.b	ENSGT00940000160729.b	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00950000183087.A.a.a.a.b.b.a.a.a.a.b.b	ENSGT00940000159407.m	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00940000154164.d	ENSGT00940000164165
Narwhal	MODERN SPECIES	309	ENSMMNG00015013143	PHEX (ENSMMNG00015013104)	ENSMMNG00015013065	ENSMMNG00015013042	MBTPS2 (ENSMMNG00015013011)	ENSMMNG00015012997	SMPX (ENSMMNG00015012992)	KLHL34 (ENSMMNG00015012985)	CNKSR2 (ENSMMNG00015012238)	ENSMMNG00015011934	ENSMMNG00015011921	RPS6KA3 (ENSMMNG00015011742)	ENSMMNG00015011692	MAP7D2 (ENSMMNG00015011661)	BCLAF3 (ENSMMNG00015011642)	ENSMMNG00015011630 #22	ENSMMNG00015011610	ENSMMNG00015011595	ENSMMNG00015011582	SH3KBP1 (ENSMMNG00015011427)	PDHA1 (ENSMMNG00015011306)	ADGRG2 (ENSMMNG00015011189)	PHKA2 (ENSMMNG00015011017)	PPEF1 (ENSMMNG00015010972)	RS1 (ENSMMNG00015010947)	CDKL5 (ENSMMNG00015010933)	ENSMMNG00015010922	ENSMMNG00015010891	ENSMMNG00015010874	ENSMMNG00015010865	RAI2 (ENSMMNG00015010851)
Beluga whale	MODERN SPECIES	41	ENSDLEG00000003610	ENSDLEG00000003601	ENSDLEG00000003596	PHEX (ENSDLEG00000003589)	SMS (ENSDLEG00000021074)	MBTPS2 (ENSDLEG00000021061)	ENSDLEG00000021055	SMPX (ENSDLEG00000021052)	CNKSR2 (ENSDLEG00000021034)	ENSDLEG00000021028	ENSDLEG00000021027	RPS6KA3 (ENSDLEG00000021020)	EIF1AX (ENSDLEG00000021017)	MAP7D2 (ENSDLEG00000020985)	BCLAF3 (ENSDLEG00000020974)	ENSDLEG00000020972 #22	ENSDLEG00000020970	ENSDLEG00000020966	SH3KBP1 (ENSDLEG00000020919)	MAP3K15 (ENSDLEG00000020876)	PDHA1 (ENSDLEG00000020859)	ADGRG2 (ENSDLEG00000020709)	PHKA2 (ENSDLEG00000020633)	PPEF1 (ENSDLEG00000020612)	RS1 (ENSDLEG00000020598)	CDKL5 (ENSDLEG00000020591)	ENSDLEG00000020586	ENSDLEG00000020579	ENSDLEG00000020574	ENSDLEG00000020569	RAI2 (ENSDLEG00000020567)
Vaquita	MODERN SPECIES	34	ENSPSNG00000022138	CLCN4 (ENSPSNG00000022149)	MID1 (ENSPSNG00000022169)	ENSPSNG00000022180	HCCS (ENSPSNG00000013406)	ARHGAP6 (ENSPSNG00000013460)	ENSPSNG00000013654	AMELX (ENSPSNG00000013715)	ENSPSNG00000013820	FRMPD4 (ENSPSNG00000014495)	PRPS2 (ENSPSNG00000015830)	TLR7 (ENSPSNG00000015939)	TLR8 (ENSPSNG00000016000)	ENSPSNG00000016025	ENSPSNG00000016076	ENSPSNG00000016159 #22	TCEANC (ENSPSNG00000016191)	ENSPSNG00000016231	ENSPSNG00000016292	OFD1 (ENSPSNG00000016377)	GPM6B (ENSPSNG00000016585)	GEMIN8 (ENSPSNG00000017041)	ENSPSNG00000017081	GLRA2 (ENSPSNG00000017149)	FANCB (ENSPSNG00000017420)	MOSPD2 (ENSPSNG00000017448)	ASB9 (ENSPSNG00000017529)	ASB11 (ENSPSNG00000017679)	PIGA (ENSPSNG00000017883)	VEGFD (ENSPSNG00000018023)	PIR (ENSPSNG00000018098)
Sperm whale	MODERN SPECIES	13	SSR4 (ENSPCTG00005021260) #8	PDZD4 (ENSPCTG00005021324) #9	L1CAM (ENSPCTG00005021438) #10	AVPR2 (ENSPCTG00005021602) #11	ARHGAP4 (ENSPCTG00005021658) #12	NAA10 (ENSPCTG00005021859) #13	RENBP (ENSPCTG00005021884) #14	HCFC1 (ENSPCTG00005021915) #15	ENSPCTG00005022009 #16	MECP2 (ENSPCTG00005022045) #17	ENSPCTG00005022067 #18	TEX28 (ENSPCTG00005022073) #19	ENSPCTG00005022081	TKTL1 (ENSPCTG00005012476) #20	FLNA (ENSPCTG00005012993) #21	EMD (ENSPCTG00005013517) #22	RPL10 (ENSPCTG00005013674) ##23	DNASE1L1 (ENSPCTG00005013759) #24	FAM3A (ENSPCTG00005013803) #34	SLC10A3 (ENSPCTG00005014048) #31	UBL4A (ENSPCTG00005014090) #30	ENSPCTG00005014136	PLXNA3 (ENSPCTG00005014209) #29	FAM50A (ENSPCTG00005014324) #28	GDI1 (ENSPCTG00005014385) #27	IKBKG (ENSPCTG00005014430) #33	ENSPCTG00005014674	GAB3 (ENSPCTG00005014727)	DKC1 (ENSPCTG00005014862)	MPP1 (ENSPCTG00005014958)	SMIM9 (ENSPCTG00005015221)
Blue whale	MODERN SPECIES	40	SSR4 (ENSBMSG00010018296) #8	PDZD4 (ENSBMSG00010018349) #9	L1CAM (ENSBMSG00010018510) #10	AVPR2 (ENSBMSG00010018770) #11	ARHGAP4 (ENSBMSG00010018853) #12	NAA10 (ENSBMSG00010019439) #13	RENBP (ENSBMSG00010019364) #14	HCFC1 (ENSBMSG00010019528) #15	TMEM187 (ENSBMSG00010019836)	IRAK1 (ENSBMSG00010019854) #16	MECP2 (ENSBMSG00010019964) #17	ENSBMSG00010020090 #18	TEX28 (ENSBMSG00010020541) #19	ENSBMSG00010020592 #20	FLNA (ENSBMSG00010020850) #21	EMD (ENSBMSG00010021072) #22	ENSBMSG00010021096 #20	ENSBMSG00010021119 #20	ENSBMSG00010021148 ##23	DNASE1L1 (ENSBMSG00010021173) #24	TAFAZZIN (ENSBMSG00010021182) #25	ATP6AP1 (ENSBMSG00010021220) #26	GDI1 (ENSBMSG00010021239) #27	ENSBMSG00010021250 #28	PLXNA3 (ENSBMSG00010021267) #29	LAGE3 (ENSBMSG00010021278)	UBL4A (ENSBMSG00010021291) #30	SLC10A3 (ENSBMSG00010021301) #31	FAM3A (ENSBMSG00010021308) #32	G6PD (ENSBMSG00010021326) #34	IKBKG (ENSBMSG00010021344) #33
Pecora	ANCESTRAL SPECIES	38	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b.b ##23	ENSGT00390000003897.s.b.a.a.b.a.a ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33
Percora_a	ANCESTRAL SPECIES	35	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b.b ##23	ENSGT00390000003897.s.b.a.a.b.a.a ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33
Bovidae	ANCESTRAL SPECIES	33	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT01030000235238.f	ENSGT00410000025802.g.b
Caprinae	ANCESTRAL SPECIES	45	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b.a.a ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33
Goat	MODERN SPECIES	94												ENSCHIG00000015283 #18	TKTL1 (ENSCHIG00000006118) #20	ENSCHIG00000020606 #19	FLNA (ENSCHIG00000011282) #21	EMD (ENSCHIG00000022498) #22
Rambouillet Sheep	MODERN SPECIES	205	IDH3G (ENSOARG00020024407) #7	SSR4 (ENSOARG00020024383) #8	PDZD4 (ENSOARG00020024315) #9	L1CAM (ENSOARG00020023921) #10	AVPR2 (ENSOARG00020023848) #11	ARHGAP4 (ENSOARG00020023326) #12	NAA10 (ENSOARG00020023246) #13	RENBP (ENSOARG00020023053) #14	HCFC1 (ENSOARG00020022415) #15	TMEM187 (ENSOARG00020022375)	IRAK1 (ENSOARG00020022349) #16	MECP2 (ENSOARG00020022209) #17	OPN1LW (ENSOARG00020022140) #18	TKTL1 (ENSOARG00020021994) #20	FLNA (ENSOARG00020021631) #21	EMD (ENSOARG00020021549) #22	RPL10 (ENSOARG00020021458) ##23	DNASE1L1 (ENSOARG00020021378) #24	TAFAZZIN (ENSOARG00020020574) #25	ATP6AP1 (ENSOARG00020020475) #26	GDI1 (ENSOARG00020020178) #27	FAM50A (ENSOARG00020020129) #28	PLXNA3 (ENSOARG00020019933) #29	UBL4A (ENSOARG00020019884) #30	SLC10A3 (ENSOARG00020019833) #31	G6PD (ENSOARG00020019292) #34	IKBKG (ENSOARG00020018901) #33	ENSOARG00020018798	ENSOARG00020018745	ENSOARG00020018703	ENSOARG00020018678
Bovinae	ANCESTRAL SPECIES	46	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b	ENSGT00960000186859
Bos	ANCESTRAL SPECIES	36	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT01100000263481.n.a.b.b.a.a.b.b	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b
Bos_a	ANCESTRAL SPECIES	39	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.a ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00530000063435.a #34	ENSGT01100000263481.n.a.b.b.a.a.b.b	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b	ENSGT00940000154891
Wild yak	MODERN SPECIES	1752															FLNA (ENSBMUG00000013711) #21	EMD (ENSBMUG00000013856) #22
Domestic yak	MODERN SPECIES	69	PDZD4 (ENSBGRG00000020897) #9	ENSBGRG00000020944	L1CAM (ENSBGRG00000020974) #10	AVPR2 (ENSBGRG00000021537) #11	ARHGAP4 (ENSBGRG00000021595) #12	NAA10 (ENSBGRG00000021764) #13	RENBP (ENSBGRG00000021852) #14	HCFC1 (ENSBGRG00000021965) #15	TMEM187 (ENSBGRG00000023012)	IRAK1 (ENSBGRG00000023042) #16	MECP2 (ENSBGRG00000023220) #17	ENSBGRG00000023305 #18	TKTL1 (ENSBGRG00000023403) #20	FLNA (ENSBGRG00000023487) #21	GDI1 (ENSBGRG00000023696) #27	EMD (ENSBGRG00000023778) #22	ENSBGRG00000023896 ##23	DNASE1L1 (ENSBGRG00000024010) #24	TAFAZZIN (ENSBGRG00000024079) #25	ATP6AP1 (ENSBGRG00000024299) #26	FAM50A (ENSBGRG00000024395) #28	PLXNA3 (ENSBGRG00000024820) #29	ENSBGRG00000026228	UBL4A (ENSBGRG00000026234) #30	SLC10A3 (ENSBGRG00000026237) #31	G6PD (ENSBGRG00000026248) #34	ENSBGRG00000026272	IKBKG (ENSBGRG00000026284) #33	ENSBGRG00000026304	ENSBGRG00000026315	ENSBGRG00000026319
Bos_b	ANCESTRAL SPECIES	31	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT01100000263481.n.a.b.b.a.a.b.b	ENSGT00530000063808.a #33	ENSGT00940000160561.d.b
Cow	MODERN SPECIES	177	ENSBTAG00000038379	L1CAM (ENSBTAG00000013462) #10	AVPR2 (ENSBTAG00000047138) #11	ARHGAP4 (ENSBTAG00000047531) #12	NAA10 (ENSBTAG00000047702) #13	RENBP (ENSBTAG00000047827) #14	HCFC1 (ENSBTAG00000011904) #15	TMEM187 (ENSBTAG00000008278)	IRAK1 (ENSBTAG00000016085) #16	MECP2 (ENSBTAG00000047855) #17	ENSBTAG00000052492	OPN1LW (ENSBTAG00000020299) #18	TEX28 (ENSBTAG00000020300) #19	TKTL1 (ENSBTAG00000020127) #20	FLNA (ENSBTAG00000011190) #21	EMD (ENSBTAG00000022314) #22	RPL10 (ENSBTAG00000007454) ##23	DNASE1L1 (ENSBTAG00000007455) #24	TAFAZZIN (ENSBTAG00000007456) #25	ATP6AP1 (ENSBTAG00000012117) #26	GDI1 (ENSBTAG00000012125) #27	FAM50A (ENSBTAG00000033032) #28	PLXNA3 (ENSBTAG00000008552) #29	LAGE3 (ENSBTAG00000054868)	UBL4A (ENSBTAG00000014331) #30	SLC10A3 (ENSBTAG00000014333) #31	FAM3A (ENSBTAG00000012747) #32	G6PD (ENSBTAG00000019512) #34	ENSBTAG00000053534	IKBKG (ENSBTAG00000006268) #33	ENSBTAG00000001900
Hybrid Bos Indicus	MODERN SPECIES	315	ENSBIXG00005012493	L1CAM (ENSBIXG00005012618) #10	AVPR2 (ENSBIXG00005012700) #11	ARHGAP4 (ENSBIXG00005001429) #12	NAA10 (ENSBIXG00005012916) #13	RENBP (ENSBIXG00005007005) #14	HCFC1 (ENSBIXG00005013025) #15	TMEM187 (ENSBIXG00005013053)	IRAK1 (ENSBIXG00005013081) #16	ENSBIXG00005013100	MECP2 (ENSBIXG00005013169) #17	ENSBIXG00005013198 #18	TEX28 (ENSBIXG00005013213) #19	TKTL1 (ENSBIXG00005013244) #20	FLNA (ENSBIXG00005013367) #21	EMD (ENSBIXG00005013423) #22	ENSBIXG00005001627 ##23	DNASE1L1 (ENSBIXG00005005490) #24	ENSBIXG00005013746 #25	ATP6AP1 (ENSBIXG00005001714) #26	GDI1 (ENSBIXG00005001727) #27	FAM50A (ENSBIXG00005013872) #28	PLXNA3 (ENSBIXG00005013935) #29	LAGE3 (ENSBIXG00005006122)	ENSBIXG00005013979 #30	SLC10A3 (ENSBIXG00005013999) #31	ENSBIXG00005014028	G6PD (ENSBIXG00005014158) #34	IKBKG (ENSBIXG00005014233) #33	ENSBIXG00005000250	ENSBIXG00005014255
Siberian musk deer	MODERN SPECIES	14		ENSMMSG00000013493	IKBKG (ENSMMSG00000013522) #33	G6PD (ENSMMSG00000013593) #34	ENSMMSG00000013656 #32	SLC10A3 (ENSMMSG00000013825) #31	UBL4A (ENSMMSG00000013839) #30	LAGE3 (ENSMMSG00000013858)	PLXNA3 (ENSMMSG00000013876) #29	ENSMMSG00000013933 #28	GDI1 (ENSMMSG00000013993) #27	ATP6AP1 (ENSMMSG00000014033) #26	TAFAZZIN (ENSMMSG00000014064) #25	ENSMMSG00000014152 #24	ENSMMSG00000014213 ##23	EMD (ENSMMSG00000014247) #22	FLNA (ENSMMSG00000014357) #21	TKTL1 (ENSMMSG00000015211) #20	TEX28 (ENSMMSG00000015249) #19	ENSMMSG00000015261 #18	ENSMMSG00000015287 #17	IRAK1 (ENSMMSG00000015351) #16	TMEM187 (ENSMMSG00000015428)	HCFC1 (ENSMMSG00000015453) #15	RENBP (ENSMMSG00000015497) #14	NAA10 (ENSMMSG00000015542) #13	ARHGAP4 (ENSMMSG00000015607) #12	AVPR2 (ENSMMSG00000015654) #11	L1CAM (ENSMMSG00000015717) #10	PDZD4 (ENSMMSG00000016210) #9	SSR4 (ENSMMSG00000016336) #8
Yarkand deer	MODERN SPECIES	1323	ENSCHYG00000021194	ENSCHYG00000021240	ENSCHYG00000021269	ENSCHYG00000021292 #35	FLNA (ENSCHYG00000021422) #21	ENSCHYG00000022474 ##23	DNASE1L1 (ENSCHYG00000022608) #24	TAFAZZIN (ENSCHYG00000022770) #25	ATP6AP1 (ENSCHYG00000023535) #26	GDI1 (ENSCHYG00000023645) #27	PLXNA3 (ENSCHYG00000023890) #29	LAGE3 (ENSCHYG00000024139)	ENSCHYG00000024202 #32	G6PD (ENSCHYG00000024413) #34	IKBKG (ENSCHYG00000024518) #33	EMD (ENSCHYG00000024666) #22	TKTL1 (ENSCHYG00000024748) #20	TEX28 (ENSCHYG00000024783) #19	ENSCHYG00000024807 #18	MECP2 (ENSCHYG00000024843) #17	IRAK1 (ENSCHYG00000024907) #16	HCFC1 (ENSCHYG00000025112) #15	RENBP (ENSCHYG00000025248) #14	ENSCHYG00000025281 #13	ARHGAP4 (ENSCHYG00000025566) #12	AVPR2 (ENSCHYG00000025838) #11	L1CAM (ENSCHYG00000025877) #10	PDZD4 (ENSCHYG00000026107) #9	ENSCHYG00000026124 #8	ENSCHYG00000026148 #7	SRPK3 (ENSCHYG00000026187)
Laurasiatheria_b	ANCESTRAL SPECIES	10	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT00910000146500	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT01050000244815.B.a.a #35	ENSGT00410000025802.h
Carnivora	ANCESTRAL SPECIES	11	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.h	ENSGT00410000025802.g.b
Caniformia	ANCESTRAL SPECIES	22	ENSGT00410000025802.h	ENSGT00530000063808.a #33	ENSGT00530000063435.a #34	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT00410000025802.g.a	ENSGT01050000244850.A.a #29	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00940000162426 #20	ENSGT00940000162843 #19	ENSGT01030000234549.a.a.a.b #18	ENSGT00530000063687.b.b.b #17	ENSGT00940000160502 #16	ENSGT00390000011272	ENSGT00940000161383 #15	ENSGT00390000013740 #14	ENSGT00550000074803 #13	ENSGT00950000182824.a.b.b #12	ENSGT01050000244882.b.c.b #11	ENSGT00940000157506 #10	ENSGT00950000183062.a.b #9	ENSGT00390000008992 #8	ENSGT00950000182989.D.a.a.g.a #7
Caniformia_b	ANCESTRAL SPECIES	27	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.h	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT01030000235238.c	ENSGT00410000025802.g.b
Ursidae	ANCESTRAL SPECIES	45	ENSGT00410000025802.g.b	ENSGT00530000063808.a #33	ENSGT00530000063435.a #34	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT00410000025802.h	ENSGT01050000244850.A.a #29	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00940000162426 #20	ENSGT00940000162843 #19	ENSGT01030000234549.a.a.a.b.b #18	ENSGT00530000063687.b.b.b #17	ENSGT00940000160502 #16	ENSGT00390000011272	ENSGT00940000161383 #15	ENSGT00390000013740 #14	ENSGT00550000074803 #13	ENSGT00950000182824.a.b.b #12	ENSGT01050000244882.b.c.b #11	ENSGT00940000157506 #10	ENSGT00950000183062.a.b #9	ENSGT00390000008992 #8	ENSGT00950000182989.D.a.a.g.a #7
Ursus	ANCESTRAL SPECIES	220															ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.h
American black bear	MODERN SPECIES	939																EMD (ENSUAMG00000020453) #22	ENSUAMG00000020454 ##23	DNASE1L1 (ENSUAMG00000020456) #24	ENSUAMG00000020457 #25	ATP6AP1 (ENSUAMG00000020536) #26
Polar bear	MODERN SPECIES	330			ENSUMAG00000019262	ENSUMAG00000019269	IKBKG (ENSUMAG00000019273) #33	G6PD (ENSUMAG00000019300) #34	FAM3A (ENSUMAG00000019452) #32	SLC10A3 (ENSUMAG00000019457) #31	FAM50A (ENSUMAG00000019470) #28	GDI1 (ENSUMAG00000019473) #27	ATP6AP1 (ENSUMAG00000019476) #26	ENSUMAG00000019531 #25	DNASE1L1 (ENSUMAG00000019505) #24	ENSUMAG00000019583 ##23	FLNA (ENSUMAG00000019645) #21	EMD (ENSUMAG00000020684) #22	TKTL1 (ENSUMAG00000020693) #20	TEX28 (ENSUMAG00000020707) #19	ENSUMAG00000020714 #18	ENSUMAG00000020747 #17	TMEM187 (ENSUMAG00000020759)	ENSUMAG00000020761	RENBP (ENSUMAG00000020768) #14	NAA10 (ENSUMAG00000020773) #13	SSR4 (ENSUMAG00000020804) #8	IDH3G (ENSUMAG00000020814) #7	SRPK3 (ENSUMAG00000020820)	BCAP31 (ENSUMAG00000020844)	ENSUMAG00000020857	DUSP9 (ENSUMAG00000020891)	CCNQ (ENSUMAG00000020894)
Giant Panda	MODERN SPECIES	2288	IKBKG (ENSAMEG00000000410) #33	G6PD (ENSAMEG00000000366) #34	FAM3A (ENSAMEG00000000362) #32	SLC10A3 (ENSAMEG00000000359) #31	UBL4A (ENSAMEG00000026286) #30	ENSAMEG00000026988	PLXNA3 (ENSAMEG00000000281) #29	FAM50A (ENSAMEG00000000273) #28	GDI1 (ENSAMEG00000000265) #27	ATP6AP1 (ENSAMEG00000000239) #26	ENSAMEG00000000230 #25	ENSAMEG00000000229 #24	RPL10 (ENSAMEG00000000227) #23	ENSAMEG00000030923	ENSAMEG00000007261 #21	ENSAMEG00000007222 #22	ENSAMEG00000018441 #20	TEX28 (ENSAMEG00000018444) #19	ENSAMEG00000018445 #18	MECP2 (ENSAMEG00000029148) #17	IRAK1 (ENSAMEG00000018449) #16	TMEM187 (ENSAMEG00000019206)	HCFC1 (ENSAMEG00000018450) #15	RENBP (ENSAMEG00000018452) #14	NAA10 (ENSAMEG00000018457) #13	ARHGAP4 (ENSAMEG00000018458) #12	AVPR2 (ENSAMEG00000018460) #11	L1CAM (ENSAMEG00000018461) #10	ENSAMEG00000009528	PDZD4 (ENSAMEG00000018464) #9	SSR4 (ENSAMEG00000018465) #8
Mustelinae	ANCESTRAL SPECIES	108	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.h
Ferret	MODERN SPECIES	531	ENSMPUG00000019515	ENSMPUG00000009840	IKBKG (ENSMPUG00000009835) #33	G6PD (ENSMPUG00000009722) #34	FAM3A (ENSMPUG00000009671) #32	SLC10A3 (ENSMPUG00000019511) #31	UBL4A (ENSMPUG00000009650) #30	PLXNA3 (ENSMPUG00000009629) #29	ENSMPUG00000009476 #28	GDI1 (ENSMPUG00000009461) #27	ATP6AP1 (ENSMPUG00000009450) #26	TAFAZZIN (ENSMPUG00000009363) #25	DNASE1L1 (ENSMPUG00000009354) #24	ENSMPUG00000009320 #23	FLNA (ENSMPUG00000009293) #21	EMD (ENSMPUG00000009232) #22	ENSMPUG00000019510	TKTL1 (ENSMPUG00000009214) #20	TEX28 (ENSMPUG00000009202) #19	ENSMPUG00000009081 #18	MECP2 (ENSMPUG00000009072) #17	IRAK1 (ENSMPUG00000009059) #16	ENSMPUG00000009052	HCFC1 (ENSMPUG00000009029) #15	NAA10 (ENSMPUG00000008989) #13	AVPR2 (ENSMPUG00000008979) #11	ARHGAP4 (ENSMPUG00000008967) #12	L1CAM (ENSMPUG00000008943) #10	PDZD4 (ENSMPUG00000008855) #9	ENSMPUG00000008803 #8	IDH3G (ENSMPUG00000008781) #7
American mink	MODERN SPECIES	402	SSR4 (ENSNVIG00000023964) #8	PDZD4 (ENSNVIG00000023958) #9	L1CAM (ENSNVIG00000023921) #10	AVPR2 (ENSNVIG00000023918) #11	ARHGAP4 (ENSNVIG00000023893) #12	NAA10 (ENSNVIG00000023879) #13	RENBP (ENSNVIG00000023874) #14	HCFC1 (ENSNVIG00000023869) #15	ENSNVIG00000023868	IRAK1 (ENSNVIG00000023867) #16	MECP2 (ENSNVIG00000023863) #17	ENSNVIG00000023859 #18	TEX28 (ENSNVIG00000023857) #19	TKTL1 (ENSNVIG00000023854) #20	FLNA (ENSNVIG00000023832) #21	EMD (ENSNVIG00000023823) #22	ENSNVIG00000023818 #23	DNASE1L1 (ENSNVIG00000023816) #24	ENSNVIG00000023810 #25	ATP6AP1 (ENSNVIG00000023809) #26	GDI1 (ENSNVIG00000023807) #27	PLXNA3 (ENSNVIG00000023655) #29	GAB3 (ENSNVIG00000023627)	DKC1 (ENSNVIG00000023613)	MPP1 (ENSNVIG00000023597)	SMIM9 (ENSNVIG00000023589)	ENSNVIG00000023588
Canidae	ANCESTRAL SPECIES	50	ENSGT01050000244815.B.a.a #35	ENSGT00530000063808.a #33	ENSGT00530000063435.a #34	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT00410000025802.g.a	ENSGT01050000244850.A.a #29	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00940000162426 #20	ENSGT00940000162843 #19	ENSGT01030000234549.a.a.a.b #18	ENSGT00530000063687.b.b.b #17	ENSGT00940000160502 #16	ENSGT00390000011272	ENSGT00940000161383 #15	ENSGT00390000013740 #14	ENSGT00550000074803 #13	ENSGT00950000182824.a.b.b #12	ENSGT01050000244882.b.c.b #11	ENSGT00940000157506 #10	ENSGT00950000183062.a.b #9	ENSGT00390000008992 #8	ENSGT00950000182989.D.a.a.g.a #7
Red fox	MODERN SPECIES	263				IKBKG (ENSVVUG00000029536) #33	G6PD (ENSVVUG00000029537) #34	FAM3A (ENSVVUG00000029538) #32	SLC10A3 (ENSVVUG00000029540) #31	PLXNA3 (ENSVVUG00000029541) #29	ENSVVUG00000029545 #28	GDI1 (ENSVVUG00000029546) #27	ATP6AP1 (ENSVVUG00000029548) #26	TAZ (ENSVVUG00000029551) #25	DNASE1L1 (ENSVVUG00000029556) #24	RPL10 (ENSVVUG00000029559) #23	FLNA (ENSVVUG00000029569) #21	EMD (ENSVVUG00000029577) #22	TEX28 (ENSVVUG00000029579) #19	TKTL1 (ENSVVUG00000029580) #20	ENSVVUG00000029585 #18	MECP2 (ENSVVUG00000029591) #17	IRAK1 (ENSVVUG00000029594) #16	TMEM187 (ENSVVUG00000029595)	HCFC1 (ENSVVUG00000029596) #15	RENBP (ENSVVUG00000029602) #14	NAA10 (ENSVVUG00000029603) #13	ARHGAP4 (ENSVVUG00000029605) #12	AVPR2 (ENSVVUG00000029607) #11	L1CAM (ENSVVUG00000029611) #10	PDZD4 (ENSVVUG00000029620) #9	ENSVVUG00000029621 #8	IDH3G (ENSVVUG00000029622) #7
Canis_lupus	ANCESTRAL SPECIES	22	ENSGT00530000063808.a #33	ENSGT00530000063435.a #34	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT00410000025802.g.a.h	ENSGT00410000025802.g.a.g	ENSGT01050000244850.A.a #29	ENSGT00390000004735.A #28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00940000162426 #20	ENSGT00940000162843 #19	ENSGT01030000234549.a.a.a.b #18	ENSGT00530000063687.b.b.b #17	ENSGT00940000160502 #16	ENSGT00390000011272	ENSGT00940000161383 #15	ENSGT00390000013740 #14	ENSGT00550000074803 #13	ENSGT00950000182824.a.b.b #12	ENSGT01050000244882.b.c.b #11	ENSGT00940000157506 #10	ENSGT00950000183062.a.b #9	ENSGT00390000008992 #8	ENSGT00950000182989.D.a.a.g.a #7
Dingo	MODERN SPECIES	383	ENSCAFG00020008988	IKBKG (ENSCAFG00020008992) #33	G6PD (ENSCAFG00020008999) #34	FAM3A (ENSCAFG00020009021) #32	SLC10A3 (ENSCAFG00020009027) #31	UBL4A (ENSCAFG00020009032) #30	ENSCAFG00020009037	PLXNA3 (ENSCAFG00020009040) #29	FAM50A (ENSCAFG00020009064) #28	GDI1 (ENSCAFG00020009070) #27	ATP6AP1 (ENSCAFG00020009077) #26	TAFAZZIN (ENSCAFG00020009089) #25	DNASE1L1 (ENSCAFG00020009104) #24	ENSCAFG00020009114 #23	FLNA (ENSCAFG00020009434) #21	EMD (ENSCAFG00020022046) #22	TKTL1 (ENSCAFG00020022053) #20	ENSCAFG00020022055	TEX28 (ENSCAFG00020022059) #19	ENSCAFG00020022061 #18	MECP2 (ENSCAFG00020022079) #17	IRAK1 (ENSCAFG00020022089) #16	HCFC1 (ENSCAFG00020022091) #15	RENBP (ENSCAFG00020022111) #14	NAA10 (ENSCAFG00020022123) #13	ARHGAP4 (ENSCAFG00020022156) #12	AVPR2 (ENSCAFG00020022923) #11	L1CAM (ENSCAFG00020022925) #10	PDZD4 (ENSCAFG00020022928) #9	SSR4 (ENSCAFG00020022930) #8	IDH3G (ENSCAFG00020022931) #7
Dog	MODERN SPECIES	144	cOR7R1 (ENSCAFG00845029673) #35	IKBKG (ENSCAFG00845029634) #33	G6PD (ENSCAFG00845029388) #34	ENSCAFG00845029578 #32	SLC10A3 (ENSCAFG00845029316) #31	UBL4A (ENSCAFG00845029287) #30	ENSCAFG00845029273	PLXNA3 (ENSCAFG00845029121) #29	FAM50A (ENSCAFG00845029041) #28	ATP6AP1 (ENSCAFG00845029004) #26	GDI1 (ENSCAFG00845028921) #27	TAZ (ENSCAFG00845028739) #25	DNASE1L1 (ENSCAFG00845028675) #24	RPL10 (ENSCAFG00845028627) #23	FLNA (ENSCAFG00845027901) #21	EMD (ENSCAFG00845027618) #22	TKTL1 (ENSCAFG00845027442) #20	TEX28 (ENSCAFG00845027400) #19	OPN1LW (ENSCAFG00845027363) #18	MECP2 (ENSCAFG00845027255) #17	IRAK1 (ENSCAFG00845027126) #16	TMEM187 (ENSCAFG00845027090)	HCFC1 (ENSCAFG00845026790) #15	RENBP (ENSCAFG00845026554) #13	ARHGAP4 (ENSCAFG00845026108) #12	AVPR2 (ENSCAFG00845026015) #11	L1CAM (ENSCAFG00845025647) #10	PDZD4 (ENSCAFG00845025486) #9	SSR4 (ENSCAFG00845025375) #8	IDH3G (ENSCAFG00845025145) #7	SRPK3 (ENSCAFG00845024967)
Felidae	ANCESTRAL SPECIES	29	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00940000159803	ENSGT00510000047092
Panthera	ANCESTRAL SPECIES	56	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22
Panthera_a	ANCESTRAL SPECIES	65	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22
lion	MODERN SPECIES	50															FLNA (ENSPLOG00000010685) #21	EMD (ENSPLOG00000010914) #22	TKTL1 (ENSPLOG00000010974) #20	TEX28 (ENSPLOG00000011170) #19	ENSPLOG00000011231 #18	MECP2 (ENSPLOG00000011316) #17	IRAK1 (ENSPLOG00000011465) #16	TMEM187 (ENSPLOG00000011845)	HCFC1 (ENSPLOG00000011916) #15	RENBP (ENSPLOG00000012442) #14	NAA10 (ENSPLOG00000012684) #13	ARHGAP4 (ENSPLOG00000012775) #12	AVPR2 (ENSPLOG00000013280) #11	L1CAM (ENSPLOG00000013396) #10	PDZD4 (ENSPLOG00000013907) #9	SSR4 (ENSPLOG00000014154) #8	IDH3G (ENSPLOG00000014245) #7
leopard	MODERN SPECIES	214	IDH3G (ENSPPRG00000007090) #7	SSR4 (ENSPPRG00000007302) #8	PDZD4 (ENSPPRG00000007757) #9	L1CAM (ENSPPRG00000010911) #10	ENSPPRG00000011145	AVPR2 (ENSPPRG00000011559) #11	ARHGAP4 (ENSPPRG00000019046) #12	NAA10 (ENSPPRG00000021297) #13	RENBP (ENSPPRG00000000874) #14	HCFC1 (ENSPPRG00000001673) #15	IRAK1 (ENSPPRG00000002790) #16	MECP2 (ENSPPRG00000004602) #17	ENSPPRG00000005526 #18	TKTL1 (ENSPPRG00000005619) #20	FLNA (ENSPPRG00000008614) #21	EMD (ENSPPRG00000008705) #22
Cat	MODERN SPECIES	252	IDH3G (ENSFCAG00000033410) #7	SSR4 (ENSFCAG00000004040) #8	ARHGAP4 (ENSFCAG00000011385) #12	L1CAM (ENSFCAG00000008614) #10	AVPR2 (ENSFCAG00000011384) #11	NAA10 (ENSFCAG00000028705) #13	RENBP (ENSFCAG00000018690) #14	HCFC1 (ENSFCAG00000011387) #15	TMEM187 (ENSFCAG00000011388)	IRAK1 (ENSFCAG00000010847) #16	MECP2 (ENSFCAG00000011389) #17	OPN1LW (ENSFCAG00000011390) #18	TEX28 (ENSFCAG00000044525) #19	TKTL1 (ENSFCAG00000011392) #20	FLNA (ENSFCAG00000011393) #21	EMD (ENSFCAG00000011394) #22	ENSFCAG00000011395 #23	DNASE1L1 (ENSFCAG00000011396) #24	TAFAZZIN (ENSFCAG00000023652) #25	ATP6AP1 (ENSFCAG00000011397) #26	GDI1 (ENSFCAG00000011398) #27	FAM50A (ENSFCAG00000011399) #28	PLXNA3 (ENSFCAG00000011400) #29	LAGE3 (ENSFCAG00000038204)	UBL4A (ENSFCAG00000025607) #30	SLC10A3 (ENSFCAG00000022989) #31	FAM3A (ENSFCAG00000035237) #32	G6PD (ENSFCAG00000043880) #34	IKBKG (ENSFCAG00000029840) #33	ENSFCAG00000048808	GAB3 (ENSFCAG00000006576)
Laurasiatheria_c	ANCESTRAL SPECIES	10	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT00910000146500	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00390000003897.s.b.a.a.b ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b	ENSGT00940000159803	ENSGT00510000047092
Equus	ANCESTRAL SPECIES	52	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b.n	ENSGT00410000025802.g.b.m
Horse	MODERN SPECIES	480	IDH3G (ENSECAG00000018509) #7	SSR4 (ENSECAG00000023150) #8	PDZD4 (ENSECAG00000024310) #9	L1CAM (ENSECAG00000002810) #10	AVPR2 (ENSECAG00000022974) #11	ARHGAP4 (ENSECAG00000023201) #12	NAA10 (ENSECAG00000015203) #13	RENBP (ENSECAG00000018888) #14	HCFC1 (ENSECAG00000022440) #15	TMEM187 (ENSECAG00000001086)	IRAK1 (ENSECAG00000009585) #16	MECP2 (ENSECAG00000018208) #17	OPN1LW (ENSECAG00000018684) #18	TEX28 (ENSECAG00000021904) #19	TKTL1 (ENSECAG00000021992) #20	EMD (ENSECAG00000013908) #22	FLNA (ENSECAG00000009550) #21	RPL10 (ENSECAG00000017154) ##23	DNASE1L1 (ENSECAG00000003758) #24	TAFAZZIN (ENSECAG00000010872) #25	ATP6AP1 (ENSECAG00000014216) #26	GDI1 (ENSECAG00000017687) #27	FAM50A (ENSECAG00000023594) #28	PLXNA3 (ENSECAG00000025088) #29	LAGE3 (ENSECAG00000038130)	UBL4A (ENSECAG00000013506) #30	SLC10A3 (ENSECAG00000013796) #31	FAM3A (ENSECAG00000013840) #32	G6PD (ENSECAG00000014994) #34	IKBKG (ENSECAG00000020595) #33	ENSECAG00000033189
Donkey	MODERN SPECIES	36	SSR4 (ENSEASG00005019363) #8	PDZD4 (ENSEASG00005028120) #9	L1CAM (ENSEASG00005019353) #10	AVPR2 (ENSEASG00005027808) #11	ARHGAP4 (ENSEASG00005019296) #12	NAA10 (ENSEASG00005030165) #13	RENBP (ENSEASG00005019286) #14	HCFC1 (ENSEASG00005019244) #15	TMEM187 (ENSEASG00005038494)	IRAK1 (ENSEASG00005019196) #16	MECP2 (ENSEASG00005019188) #17	ENSEASG00005019183 #18	TEX28 (ENSEASG00005019182) #19	TKTL1 (ENSEASG00005019179) #20	FLNA (ENSEASG00005018577) #21	EMD (ENSEASG00005019177) #22	ENSEASG00005025120 #23	DNASE1L1 (ENSEASG00005028299) #24	TAFAZZIN (ENSEASG00005025100) #25	ATP6AP1 (ENSEASG00005034458) #26	GDI1 (ENSEASG00005018454) #27	FAM50A (ENSEASG00005018449) #28	PLXNA3 (ENSEASG00005018440) #29	UBL4A (ENSEASG00005018436) #30	SLC10A3 (ENSEASG00005018434) #31	FAM3A (ENSEASG00005018431) #32	G6PD (ENSEASG00005018430) #34	ENSEASG00005032513 #33	ENSEASG00005032016	ENSEASG00005027434	ENSEASG00005031374
Chiroptera	ANCESTRAL SPECIES	48	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT00910000146500	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.a ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b	ENSGT01050000244815.B.a.a #35
Microchiroptera	ANCESTRAL SPECIES	45	ENSGT00390000008992 #8	ENSGT00950000183062.a.b #9	ENSGT00940000157506 #10	ENSGT01050000244882.b.c.b #11	ENSGT00950000182824.a.b.b #12	ENSGT00550000074803 #13	ENSGT00390000013740 #14	ENSGT00940000161383 #15	ENSGT00390000011272	ENSGT00940000160502 #16	ENSGT00530000063687.b.b.b #17	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162843 #19	ENSGT00940000162426 #20	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00390000003897.s.b.a.a.a ##23	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000018621 #25	ENSGT00940000156650 #26	ENSGT00950000182994.B.a.a.a #27	ENSGT00390000004735.A #28	ENSGT01050000244850.A.a #29	ENSGT00410000025802.g.a	ENSGT00730000111022 #30	ENSGT00950000182808.b.b #31	ENSGT00950000183004.a.a.a.b #32	ENSGT00530000063435.a #34	ENSGT00530000063808.a #33	ENSGT00410000025802.g.b	ENSGT01050000244815.B.a.a #35
Greater horseshoe bat	MODERN SPECIES		PDZD4 (ENSRFEG00010004912) #9	L1CAM (ENSRFEG00010004838) #10	ENSRFEG00010004798	AVPR2 (ENSRFEG00010004785) #11	ARHGAP4 (ENSRFEG00010004760) #12	ARD1A (ENSRFEG00010004730) #13	RENBP (ENSRFEG00010004689) #14	HCFC1 (ENSRFEG00010004542) #15	TMEM187 (ENSRFEG00010004460)	IRAK1 (ENSRFEG00010004369) #16	MECP2 (ENSRFEG00010004285) #17	ENSRFEG00010004230 #18	TEX28 (ENSRFEG00010004212) #19	TKTL1 (ENSRFEG00010004159) #20	FLNA (ENSRFEG00010004101) #21	EMD (ENSRFEG00010004008) #22	RPL10 (ENSRFEG00010003909) ##23	BT_m006_jsm59FD5r (ENSRFEG00010003791) #24	TAZ (ENSRFEG00010003720) #25	ATP6AP1 (ENSRFEG00010003617) #26	GDI1 (ENSRFEG00010003480) #27	FAM50A (ENSRFEG00010003417) #28	PLXNA3 (ENSRFEG00010003374) #29	LAGE3 (ENSRFEG00010003340)	UBL4A (ENSRFEG00010003315) #30	SLC10A3 (ENSRFEG00010003285) #31	FAM3A (ENSRFEG00010003196) #32	G6PD (ENSRFEG00010003111) #34	IKBKG (ENSRFEG00010003030) #33	ENSRFEG00010002995	ENSRFEG00010002963
Microbat	MODERN SPECIES	977	ENSMLUG00000025335 #35	IKBKG (ENSMLUG00000027075) #33	G6PD (ENSMLUG00000008210) #34	FAM3A (ENSMLUG00000005226) #32	SLC10A3 (ENSMLUG00000008199) #31	UBL4A (ENSMLUG00000027145) #30	ENSMLUG00000030030	PLXNA3 (ENSMLUG00000010006) #29	GDI1 (ENSMLUG00000003501) #27	ENSMLUG00000022234 #28	ATP6AP1 (ENSMLUG00000003493) #26	TAFAZZIN (ENSMLUG00000024037) #25	DNASE1L1 (ENSMLUG00000014342) #24	ENSMLUG00000014337 ##23	FLNA (ENSMLUG00000014316) #21	EMD (ENSMLUG00000005200) #22	TKTL1 (ENSMLUG00000014306) #20	TEX28 (ENSMLUG00000014304) #19	ENSMLUG00000014299 #18	ENSMLUG00000024727	MECP2 (ENSMLUG00000014297) #17	IRAK1 (ENSMLUG00000014288) #16	TMEM187 (ENSMLUG00000014286)	HCFC1 (ENSMLUG00000014275) #15	RENBP (ENSMLUG00000014271) #14	NAA10 (ENSMLUG00000014267) #13	ARHGAP4 (ENSMLUG00000014257) #12	AVPR2 (ENSMLUG00000014253) #11	L1CAM (ENSMLUG00000014234) #10	PDZD4 (ENSMLUG00000004464) #9	SSR4 (ENSMLUG00000004462) #8
Megabat	MODERN SPECIES	3437														ENSPVAG00000003734 #28	FLNA (ENSPVAG00000003735) #21	EMD (ENSPVAG00000003741) #22
Atlantogenata	ANCESTRAL SPECIES	70	ENSGT01050000244815.B.a.a #35	ENSGT00530000063808.a #33	ENSGT00530000063435.a #34	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT00410000025802.h	ENSGT01050000244850.A.a #29	ENSGT00390000004735.C ##28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00940000162426 #20	ENSGT00940000162843 #19	ENSGT01030000234549.a.a.a.b #18	ENSGT00530000063687.b.b.b #17	ENSGT00940000160502 #16	ENSGT00390000011272	ENSGT00940000161383 #15	ENSGT00940000166196	ENSGT00390000013740 #14	ENSGT00550000074803 #13	ENSGT00950000182824.a.b.b #12	ENSGT01050000244882.b.c.b #11	ENSGT00940000157506 #10	ENSGT00950000183062.a.b #9	ENSGT00390000008992 #8
Afrotheria	ANCESTRAL SPECIES	82	ENSGT01050000244815.B.a.a #35	ENSGT00530000063808.a #33	ENSGT00530000063435.a #34	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT00410000025802.h	ENSGT01050000244850.A.a #29	ENSGT00390000004735.C ##28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000003897.s.a ##23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00940000162843 #19	ENSGT01030000234549.a.a.a.b #18	ENSGT00940000162426 #20	ENSGT00530000063687.b.b.b #17	ENSGT00940000160502 #16	ENSGT00390000011272	ENSGT00940000161383 #15	ENSGT00940000166196	ENSGT00390000013740 #14	ENSGT00550000074803 #13	ENSGT00950000182824.a.b.b #12	ENSGT01050000244882.b.c.b #11	ENSGT00940000157506 #10	ENSGT00950000183062.a.b #9	ENSGT00390000008992 #8
Afrotheria_a	ANCESTRAL SPECIES	81	ENSGT01050000244815.B.a.a #35	ENSGT00530000063808.a #33	ENSGT00530000063435.a #34	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT00410000025802.h	ENSGT01050000244850.A.a #29	ENSGT00390000004735.C ##28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000003897.s.a ##23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00940000162843 #19	ENSGT01030000234549.a.a.a.b #18	ENSGT00530000063687.b.b.b #17	ENSGT00940000160502 #16	ENSGT00390000011272	ENSGT00940000161383 #15	ENSGT00940000166196	ENSGT00390000013740 #14	ENSGT00550000074803 #13	ENSGT00950000182824.a.b.b #12	ENSGT01050000244882.b.c.b #11	ENSGT00940000157506 #10	ENSGT00950000183062.a.b #9	ENSGT00390000008992 #8	ENSGT00950000182989.D.a.a.g.a #7
Elephant	MODERN SPECIES	50	ENSLAFG00000010146 #35	IKBKG (ENSLAFG00000026529) #33	G6PD (ENSLAFG00000010694) #34	FAM3A (ENSLAFG00000032131) #32	SLC10A3 (ENSLAFG00000011108) #31	UBL4A (ENSLAFG00000022192) #30	ENSLAFG00000016044	PLXNA3 (ENSLAFG00000031276) #29	ENSLAFG00000008766 ##28	GDI1 (ENSLAFG00000008761) #27	ATP6AP1 (ENSLAFG00000008757) #26	TAFAZZIN (ENSLAFG00000003502) #25	DNASE1L1 (ENSLAFG00000003498) #24	ENSLAFG00000031860 ##23	FLNA (ENSLAFG00000006359) #21	EMD (ENSLAFG00000005993) #22	ENSLAFG00000005145	ENSLAFG00000005142 #19	ENSLAFG00000010311 #18	ENSLAFG00000027266	MECP2 (ENSLAFG00000016292) #17	IRAK1 (ENSLAFG00000016212) #16	TMEM187 (ENSLAFG00000003455)	HCFC1 (ENSLAFG00000004418) #15	ENSLAFG00000028984	RENBP (ENSLAFG00000007027) #14	NAA10 (ENSLAFG00000007025) #13	ARHGAP4 (ENSLAFG00000014809) #12	AVPR2 (ENSLAFG00000027738) #11	L1CAM (ENSLAFG00000021925) #10	PDZD4 (ENSLAFG00000025865) #9
Hyrax	MODERN SPECIES	6806															FLNA (ENSPCAG00000012976) #21	EMD (ENSPCAG00000013274) #22
Tenrec	MODERN SPECIES	12579																EMD (ENSETEG00000006997) #22
Xenarthra	ANCESTRAL SPECIES	103			ENSGT00530000063808.a #33	ENSGT00530000063435.a #34	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT01050000244850.A.a #29	ENSGT00390000004735.C ##28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650 #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00390000003897.s.b.a.b.b #23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00940000162426 #20	ENSGT00940000162843 #19	ENSGT00530000063687.b.b.b #17	ENSGT00940000160502 #16	ENSGT00390000011272	ENSGT00940000161383 #15	ENSGT00940000166196	ENSGT00390000013740 #14	ENSGT00550000074803 #13	ENSGT00950000182824.a.b.b #12
Armadillo	MODERN SPECIES	4500			IKBKG (ENSDNOG00000010758) #33	G6PD (ENSDNOG00000010727) #34	FAM3A (ENSDNOG00000006532) #32	SLC10A3 (ENSDNOG00000035600) #31	UBL4A (ENSDNOG00000002769) #30	PLXNA3 (ENSDNOG00000025707) #29	ENSDNOG00000041781 ##28	GDI1 (ENSDNOG00000040963) #27	ATP6AP1 (ENSDNOG00000015526) #26	TAFAZZIN (ENSDNOG00000049167) #25	DNASE1L1 (ENSDNOG00000045597) #24	ENSDNOG00000037062 #23	FLNA (ENSDNOG00000037289) #21	EMD (ENSDNOG00000048541) #22	TKTL1 (ENSDNOG00000024515) #20	TEX28 (ENSDNOG00000018401) #19	MECP2 (ENSDNOG00000013419) #17	IRAK1 (ENSDNOG00000014412) #16	TMEM187 (ENSDNOG00000003232)	HCFC1 (ENSDNOG00000047555) #15	ENSDNOG00000043559	RENBP (ENSDNOG00000024828) #14	NAA10 (ENSDNOG00000030734) #13	ARHGAP4 (ENSDNOG00000048684) #12
Marsupialia	ANCESTRAL SPECIES	39	ENSGT00530000063808.a #33	ENSGT00530000063435.a #34	ENSGT00940000165180	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT01050000244850.A.a #29	ENSGT00390000004735.C ##28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650.g.b #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00950000182846.a.a.a.a.b ##24	ENSGT00390000003897.s.b #23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22
Opossum	MODERN SPECIES	139																ENSMODG00000002926 #22
Marsupialia_b	ANCESTRAL SPECIES	35	ENSGT00530000063808.a #33	ENSGT00530000063435.a #34	ENSGT00940000165180	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT01050000244850.A.a #29	ENSGT00390000004735.C.e.a ##28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650.g.b #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00950000182846.a.a.a.a.b ##24	ENSGT00390000003897.s.b.d.b #23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22
Diprotodontia	ANCESTRAL SPECIES	79	ENSGT00530000063808.a #33	ENSGT00530000063435.a #34	ENSGT00940000165180	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT01050000244850.A.a #29	ENSGT00390000004735.C.e.a ##28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650.g.b.a #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00950000182846.a.a.a.a.b ##24	ENSGT00390000003897.s.b.d.b #23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22
Diprotodontia_a	ANCESTRAL SPECIES	74	ENSGT00530000063808.a #33	ENSGT00530000063435.a #34	ENSGT00940000165180	ENSGT00950000183004.a.a.a.b #32	ENSGT00950000182808.b.b #31	ENSGT00730000111022 #30	ENSGT01050000244850.A.a #29	ENSGT00390000004735.C.e.a.b ##28	ENSGT00950000182994.B.a.a.a #27	ENSGT00940000156650.g.b.a #26	ENSGT00390000018621 #25	ENSGT00950000182846.a.a.a.a.a #24	ENSGT00950000182846.a.a.a.a.b ##24	ENSGT00390000003897.s.b.d.b.a #23	ENSGT00940000153588.b #21	ENSGT00390000002034 #22	ENSGT00950000182965.a.b.b.a.a.a.b.a.b.a.b	ENSGT00940000164911	ENSGT00390000013558.f
koala	MODERN SPECIES	275	ENSPCIG00000009019	FAM3A (ENSPCIG00000027132) #32	SLC10A3 (ENSPCIG00000027130) #31	ENSPCIG00000027128 #30	ENSPCIG00000036040 #29	ENSPCIG00000036166 #29	ENSPCIG00000027040 ##28	GDI1 (ENSPCIG00000026947) #27	ENSPCIG00000026944 #26	TAFAZZIN (ENSPCIG00000026941) #25	ENSPCIG00000026938	ENSPCIG00000026928 #24	ENSPCIG00000026917 ##24	ENSPCIG00000026904 #23	FLNA (ENSPCIG00000026358) #21	ENSPCIG00000010081 #22	ENSPCIG00000022816	ENSPCIG00000022856	ENSPCIG00000001851	ENSPCIG00000034683
Common wonbat	MODERN SPECIES	1065	IKBKG (ENSVURG00010019077) #33	G6PD (ENSVURG00010019009) #34	ENSVURG00010018900	FAM3A (ENSVURG00010018864) #32	SLC10A3 (ENSVURG00010018859) #31	UBL4A (ENSVURG00010018854) #30	PLXNA3 (ENSVURG00010018841) #29	ENSVURG00010018834 ##28	GDI1 (ENSVURG00010018825) #27	ENSVURG00010018815 #26	TAFAZZIN (ENSVURG00010018809) #25	DNASE1L1 (ENSVURG00010018801) #24	ENSVURG00010018778 #23	ENSVURG00010018760	FLNA (ENSVURG00010018669) #21	ENSVURG00010018644 #22	ENSVURG00010018641	ENSVURG00010018533	ENSVURG00010018504	ENSVURG00010018501	ENSVURG00010018460
Wallaby	MODERN SPECIES	10929																ENSMEUG00000000799 #22
Tasmanian devil	MODERN SPECIES	21	ENSSHAG00000004297	IKBKG (ENSSHAG00000003200) #33	G6PD (ENSSHAG00000002307) #34	FAM3A (ENSSHAG00000021982) #32	SLC10A3 (ENSSHAG00000027798) #31	ENSSHAG00000032311 #30	PLXNA3 (ENSSHAG00000006328) #29	ENSSHAG00000005773 ##28	GDI1 (ENSSHAG00000023206) #27	ENSSHAG00000005317 #26	ENSSHAG00000030741 #25	ENSSHAG00000001595 #24	ENSSHAG00000004015 ##24	ENSSHAG00000022273 ##23	ENSSHAG00000001055 #21	ENSSHAG00000003040 #22	ENSSHAG00000024989	ENSSHAG00000001750	ENSSHAG00000024707	ENSSHAG00000029755	ENSSHAG00000002700	ENSSHAG00000027640	ENSSHAG00000002186	ENSSHAG00000003075	ENSSHAG00000029117	ENSSHAG00000027722	ENSSHAG00000030188	ENSSHAG00000027267	ENSSHAG00000000566	ENSSHAG00000000292	ENSSHAG00000001491