Fungi/Metazoa group	ANCESTRAL SPECIES																	ENSGT00940000153464.A #22
Bilateria	ANCESTRAL SPECIES																	ENSGT00940000153464.A #22
Chordata	ANCESTRAL SPECIES																	ENSGT00940000153464.A #22
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153464.A.b #22
Gnathostomata	ANCESTRAL SPECIES	12																ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000156880	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b	ENSGT00390000018059.b	ENSGT00940000160907	ENSGT00940000160836	ENSGT00950000183161.b	ENSGT00940000158561	ENSGT00940000155005	ENSGT00390000015399
Euteleostomi	ANCESTRAL SPECIES	117											ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00510000046975.b #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b	ENSGT00940000160907	ENSGT00940000160836.d	ENSGT00950000183161.b	ENSGT00940000158561	ENSGT00940000155005	ENSGT00390000015399	ENSGT00510000047399
Sarcopterygii	ANCESTRAL SPECIES	125											ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00510000046975.b #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b	ENSGT00940000160907	ENSGT00940000160836.d	ENSGT00950000183161.b	ENSGT00940000158561	ENSGT00940000155005	ENSGT00390000015399	ENSGT00510000047399
Tetrapoda	ANCESTRAL SPECIES	140							ENSGT00940000157774	ENSGT00940000154374.b #31	ENSGT00940000163762.a.a	ENSGT00390000004199 #28	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00510000046975.b #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b	ENSGT00940000160907	ENSGT00940000160836.d	ENSGT00940000160493
Amniota	ANCESTRAL SPECIES	131												ENSGT00510000046975.b #17	ENSGT00390000007598 #18	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24
Mammalia	ANCESTRAL SPECIES	137									ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00390000007598 #18	ENSGT00510000046975.b #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24
Theria	ANCESTRAL SPECIES	12						ENSGT01050000244808.A.b.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00390000007598 #18	ENSGT00510000046975.b #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000163762.a.a	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d
Eutheria	ANCESTRAL SPECIES		ENSGT00390000000566	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00940000164616	ENSGT00940000163577 #19	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000163762.a.a	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d
Boreoeutheria	ANCESTRAL SPECIES		ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00940000164616	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00910000148347	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000163762.a.a	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309
Euarchontoglires	ANCESTRAL SPECIES		ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00910000148347	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659
Primates	ANCESTRAL SPECIES	7	ENSGT00390000001092	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00910000148347	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00390000001092	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00910000148347	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00390000001092	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00910000148347	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.a.o.b #8	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.p ##12	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00950000183210.d.a.c.b.b.a.b.b.a.b ##29	ENSGT00940000154205.h.bb #30	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309
Cebidae	ANCESTRAL SPECIES	12	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.a.o.b #8	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.p ##12	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00950000183210.d.a.c.b.b.a.b.b.a.b ##29	ENSGT00940000154205.h.bb #30	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309
Cebidae_a	ANCESTRAL SPECIES	6	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.a.o.b #8	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.p ##12	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00950000183210.d.a.c.b.b.a.b.b.a.b ##29	ENSGT00940000154205.h.bb.a #30	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309
Bolivian squirrel monkey	MODERN SPECIES	221		ENSSBOG00000023592 #8	ENSSBOG00000028366 #9	ENSSBOG00000034557 #10	FCRLA (ENSSBOG00000021932) #11	FCRLB (ENSSBOG00000021346) #12	DUSP12 (ENSSBOG00000023604) #13	ATF6 (ENSSBOG00000029816) #14	OLFML2B (ENSSBOG00000021662) #15	ENSSBOG00000028748 #16	ENSSBOG00000019874 #17	SPATA46 (ENSSBOG00000003135) #18	SH2D1B (ENSSBOG00000023916) #19	ENSSBOG00000027882 #20	UHMK1 (ENSSBOG00000028187) #21	UAP1 (ENSSBOG00000018996) #22	DDR2 (ENSSBOG00000014912) #23	HSD17B7 (ENSSBOG00000003536) #24	CCDC190 (ENSSBOG00000003369) #25	RGS4 (ENSSBOG00000023788) #26	RGS5 (ENSSBOG00000019112) #27	NUF2 (ENSSBOG00000020393) #28	ENSSBOG00000022242 #29	ENSSBOG00000023056 #30	PBX1 (ENSSBOG00000019425) #31
Capuchin	MODERN SPECIES	540	HSPA6 (ENSCCAG00000001037)	ENSCCAG00000035984 #9	ENSCCAG00000029222 ##12	FCRLA (ENSCCAG00000025763) #11	FCRLB (ENSCCAG00000016301) #12	DUSP12 (ENSCCAG00000022950) #13	ATF6 (ENSCCAG00000022330) #14	OLFML2B (ENSCCAG00000030794) #15	NOS1AP (ENSCCAG00000025710) ##17	ENSCCAG00000031626	SPATA46 (ENSCCAG00000037678) #18	C1orf226 (ENSCCAG00000037858) #17	SH2D1B (ENSCCAG00000037866) #19	ENSCCAG00000018613 #20	UHMK1 (ENSCCAG00000033689) #21	UAP1 (ENSCCAG00000029219) #22	DDR2 (ENSCCAG00000035421) #23	HSD17B7 (ENSCCAG00000029054) #24	CCDC190 (ENSCCAG00000037082) #25
Marmoset	MODERN SPECIES	9	NPL (ENSCJAG00000004793)	RGS8 (ENSCJAG00000004758)	RGS16 (ENSCJAG00000073390)	RNASEL (ENSCJAG00000004725)	RGSL1 (ENSCJAG00000004689)	TEDDM1 (ENSCJAG00000023343)	GLUL (ENSCJAG00000004654)	ZNF648 (ENSCJAG00000004652)	CACNA1E (ENSCJAG00000004426)	IER5 (ENSCJAG00000004423)	MR1 (ENSCJAG00000004391)	STX6 (ENSCJAG00000004356)	KIAA1614 (ENSCJAG00000004342)	ENSCJAG00000087031	UHMK1 (ENSCJAG00000004291) #21	UAP1 (ENSCJAG00000004264) #22	DDR2 (ENSCJAG00000004221) #23	CCDC190 (ENSCJAG00000004163) #25	HSD17B7 (ENSCJAG00000004176) #24	RGS4 (ENSCJAG00000073413) #26	NUF2 (ENSCJAG00000004050) #28	ENSCJAG00000079672	PBX1 (ENSCJAG00000004712) #31	ENSCJAG00000086352	LMX1A (ENSCJAG00000082002)	RXRG (ENSCJAG00000004656)	LRRC52 (ENSCJAG00000004653)	MGST3 (ENSCJAG00000004619)	ENSCJAG00000004575	TMCO1 (ENSCJAG00000004561)	ENSCJAG00000004523
Mas night monkey	MODERN SPECIES	893								ENSANAG00000025221 #14	OLFML2B (ENSANAG00000023374) #15	ENSANAG00000037585 #17	SPATA46 (ENSANAG00000000057) #18	SH2D1B (ENSANAG00000001807) #19	ENSANAG00000028318 #20	ENSANAG00000030813	UHMK1 (ENSANAG00000022526) #21	UAP1 (ENSANAG00000027960) #22	DDR2 (ENSANAG00000022647) #23	HSD17B7 (ENSANAG00000023761) #24	CCDC190 (ENSANAG00000023182) #25	RGS4 (ENSANAG00000019849) #26	RGS5 (ENSANAG00000026600) #27	NUF2 (ENSANAG00000027298) #28	ENSANAG00000027887 ##29	ENSANAG00000013627 #30	ENSANAG00000027656	PBX1 (ENSANAG00000026588) #31	LMX1A (ENSANAG00000020495)	RXRG (ENSANAG00000031942)	LRRC52 (ENSANAG00000029215)	MGST3 (ENSANAG00000022897)	ALDH9A1 (ENSANAG00000029992)
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00390000001092	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b.a #22	ENSGT00940000154842.a.b #23	ENSGT00550000076417	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00910000148347	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309
Hominoidea	ANCESTRAL SPECIES	7	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT00940000163722	ENSGT00950000183030.m.b.b.m.a	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00940000164616	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b.a #22	ENSGT00940000154842.a.b #23	ENSGT00550000076417	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00910000148347	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00940000154326.a.b.b.m.b.a	ENSGT00390000008608	ENSGT00940000163309
Hominidae	ANCESTRAL SPECIES	6	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT00940000163722	ENSGT00950000183030.m.b.b.m.a	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b.a #22	ENSGT00940000154842.a.b #23	ENSGT00550000076417	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00940000154326.a.b.b.m.b.a	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.i #10	ENSGT00950000183030.m.b.b.m.a	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b.a #22	ENSGT00940000154842.a.b #23	ENSGT00550000076417	ENSGT00390000013340.e #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00940000154326.a.b.b.m.b.a	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.i #10	ENSGT00950000183030.m.b.b.m.a	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b.a #22	ENSGT00940000154842.a.b #23	ENSGT00550000076417	ENSGT00390000013340.e #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00940000154326.a.b.b.m.b.a	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659
Pan	ANCESTRAL SPECIES		ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.i #10	ENSGT00950000183030.m.b.b.m.a	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00940000164616	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b.a #22	ENSGT00940000154842.a.b #23	ENSGT00550000076417	ENSGT00390000013340.e #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00940000154326.a.b.b.m.b.a	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659
Chimpanzee	MODERN SPECIES		ENSPTRG00000049334	ENSPTRG00000001590 #9	ENSPTRG00000043442	FCRLA (ENSPTRG00000001592) #11	FCRLB (ENSPTRG00000001593) #12	DUSP12 (ENSPTRG00000001594) #13	ATF6 (ENSPTRG00000001596) #14	ENSPTRG00000052580	OLFML2B (ENSPTRG00000001597) #15	NOS1AP (ENSPTRG00000001598) ##17	SPATA46 (ENSPTRG00000001599) #18	ENSPTRG00000030327	SH2D1B (ENSPTRG00000024320) #19	ENSPTRG00000048731	UHMK1 (ENSPTRG00000001601) #21	UAP1 (ENSPTRG00000001602) #22	DDR2 (ENSPTRG00000001603) #23	ENSPTRG00000051980	HSD17B7 (ENSPTRG00000002435) #24	CCDC190 (ENSPTRG00000047448) #25	RGS4 (ENSPTRG00000001608) #26	RGS5 (ENSPTRG00000001609) #27	NUF2 (ENSPTRG00000001610) #28	PBX1 (ENSPTRG00000001611) #31	LMX1A (ENSPTRG00000001612)	RXRG (ENSPTRG00000023788)	LRRC52 (ENSPTRG00000001614)	MGST3 (ENSPTRG00000001616)	ALDH9A1 (ENSPTRG00000001617)	TMCO1 (ENSPTRG00000001618)	UCK2 (ENSPTRG00000001619)
Bonobo	MODERN SPECIES		ENSPPAG00000024903	ENSPPAG00000028278	ENSPPAG00000038085 #10	ENSPPAG00000032343	FCRLA (ENSPPAG00000039817) #11	FCRLB (ENSPPAG00000027503) #12	DUSP12 (ENSPPAG00000033359) #13	ATF6 (ENSPPAG00000025323) #14	ENSPPAG00000004038	OLFML2B (ENSPPAG00000028533) #15	NOS1AP (ENSPPAG00000041755) ##17	SPATA46 (ENSPPAG00000014103) #18	ENSPPAG00000031588	ENSPPAG00000034441	UHMK1 (ENSPPAG00000041163) #21	UAP1 (ENSPPAG00000032875) #22	DDR2 (ENSPPAG00000030809) #23	ENSPPAG00000016253	HSD17B7 (ENSPPAG00000028691) #24	CCDC190 (ENSPPAG00000041751) #25	ENSPPAG00000032457 #26	RGS5 (ENSPPAG00000031360) #27	NUF2 (ENSPPAG00000042496) #28	PBX1 (ENSPPAG00000012661) #31	LMX1A (ENSPPAG00000032600)	RXRG (ENSPPAG00000032033)	LRRC52 (ENSPPAG00000042343)	ENSPPAG00000029238	MGST3 (ENSPPAG00000036962)	ALDH9A1 (ENSPPAG00000041488)	ENSPPAG00000033973
Human	MODERN SPECIES		ENSG00000289768	FCGR2C (ENSG00000244682) #10	FCGR3B (ENSG00000162747) #9	FCGR2B (ENSG00000072694) #10	FCRLA (ENSG00000132185) #11	FCRLB (ENSG00000162746) #12	DUSP12 (ENSG00000081721) #13	ATF6 (ENSG00000118217) #14	OLFML2B (ENSG00000162745) #15	NOS1AP (ENSG00000198929) ##17	ENSG00000254706	SPATA46 (ENSG00000171722) #18	C1orf226 (ENSG00000239887) #17	SH2D1B (ENSG00000198574) #19	UHMK1 (ENSG00000152332) #21	UAP1 (ENSG00000117143) #22	DDR2 (ENSG00000162733) #23	HSD17B7 (ENSG00000132196) #24	CCDC190 (ENSG00000185860) #25	RGS4 (ENSG00000117152) #26	RGS5 (ENSG00000143248) #27	NUF2 (ENSG00000143228) #28	PBX1 (ENSG00000185630) #31	LMX1A (ENSG00000162761)	RXRG (ENSG00000143171)	LRRC52 (ENSG00000162763)	MGST3 (ENSG00000143198)	ALDH9A1 (ENSG00000143149)	TMCO1 (ENSG00000143183)	UCK2 (ENSG00000143179)	FAM78B (ENSG00000188859)
Gorilla	MODERN SPECIES		ENSGGOG00000042232 #9	ENSGGOG00000042027 #9	ENSGGOG00000003859 #10	ENSGGOG00000023508	FCRLA (ENSGGOG00000001288) #11	FCRLB (ENSGGOG00000028059) #12	DUSP12 (ENSGGOG00000004596) #13	ATF6 (ENSGGOG00000013807) #14	OLFML2B (ENSGGOG00000008860) #15	NOS1AP (ENSGGOG00000013747) ##17	C1orf226 (ENSGGOG00000013762) #17	SPATA46 (ENSGGOG00000013760) #18	SH2D1B (ENSGGOG00000014121) #19	ENSGGOG00000037180	UHMK1 (ENSGGOG00000002032) #21	UAP1 (ENSGGOG00000016431) #22	DDR2 (ENSGGOG00000011593) #23	HSD17B7 (ENSGGOG00000011264) #24	CCDC190 (ENSGGOG00000001952) #25	ENSGGOG00000011376 #26	RGS5 (ENSGGOG00000013984) #27	NUF2 (ENSGGOG00000007980) #28	PBX1 (ENSGGOG00000011303) #31	ENSGGOG00000042136	LMX1A (ENSGGOG00000003286)	RXRG (ENSGGOG00000003983)	LRRC52 (ENSGGOG00000007321)	MGST3 (ENSGGOG00000013271)	ENSGGOG00000000900	ENSGGOG00000041829	UCK2 (ENSGGOG00000038402)
Orangutan	MODERN SPECIES		HSPA6 (ENSPPYG00000000595)	ENSPPYG00000000594 #9	ENSPPYG00000000593 #10	ENSPPYG00000035167	FCRLA (ENSPPYG00000000592) #11	FCRLB (ENSPPYG00000000591) #12	DUSP12 (ENSPPYG00000000590) #13	ATF6 (ENSPPYG00000000589) #14	OLFML2B (ENSPPYG00000000588) #15	NOS1AP (ENSPPYG00000000585) ##17	SPATA46 (ENSPPYG00000000586) #18	C1orf226 (ENSPPYG00000034846) #17	SH2D1B (ENSPPYG00000000584) #19	ENSPPYG00000000583 #20	UHMK1 (ENSPPYG00000000582) #21	UAP1 (ENSPPYG00000000581) #22	DDR2 (ENSPPYG00000000580) #23	ENSPPYG00000000579	HSD17B7 (ENSPPYG00000000578) #24	CCDC190 (ENSPPYG00000037665) #25	RGS4 (ENSPPYG00000000576) #26	RGS5 (ENSPPYG00000030379) #27	NUF2 (ENSPPYG00000000574) #28	PBX1 (ENSPPYG00000000572) #31	LMX1A (ENSPPYG00000036392)	RXRG (ENSPPYG00000000571)	LRRC52 (ENSPPYG00000000570)	MGST3 (ENSPPYG00000000569)	ALDH9A1 (ENSPPYG00000000568)	TMCO1 (ENSPPYG00000035165)	UCK2 (ENSPPYG00000000563)
Gibbon	MODERN SPECIES	2	ENSNLEG00000014397 #10	HSPA6 (ENSNLEG00000019161)	ENSNLEG00000014401 #9	ENSNLEG00000035812 #10	ENSNLEG00000030726	FCRLA (ENSNLEG00000035092) #11	FCRLB (ENSNLEG00000014502) #12	DUSP12 (ENSNLEG00000014515) #13	ATF6 (ENSNLEG00000014528) #14	OLFML2B (ENSNLEG00000014543) #15	NOS1AP (ENSNLEG00000026577) ##17	ENSNLEG00000035216	SH2D1B (ENSNLEG00000032972) #19	ENSNLEG00000029762 #20	UHMK1 (ENSNLEG00000026604) #21	UAP1 (ENSNLEG00000026707) #22	DDR2 (ENSNLEG00000014557) #23	ENSNLEG00000019162	HSD17B7 (ENSNLEG00000014591) #24	CCDC190 (ENSNLEG00000014616) #25	ENSNLEG00000014620 #26	ENSNLEG00000032703	RGS5 (ENSNLEG00000029484) #27	NUF2 (ENSNLEG00000014636) #28	ENSNLEG00000028806	PBX1 (ENSNLEG00000014662) #31	ENSNLEG00000014674	RXRG (ENSNLEG00000014680)	LRRC52 (ENSNLEG00000014689)	ENSNLEG00000034998	MGST3 (ENSNLEG00000014693)
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.a.m #10	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.n #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b.a #22	ENSGT00940000154842.a.b #23	ENSGT00550000076417	ENSGT00390000013340 #24
Rhinopithecus	ANCESTRAL SPECIES	501									ENSGT00510000046975.b.u ##17	ENSGT00950000183400	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT01030000234540.B.a.a.a.b.a.a #20	ENSGT00940000157769 #21	ENSGT00940000153464.A.b.a #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24
Black snub-nosed monkey	MODERN SPECIES	81									NOS1AP (ENSRBIG00000037811) ##17	ENSRBIG00000020244	C1orf226 (ENSRBIG00000039500) #17	SPATA46 (ENSRBIG00000036254) #18	SH2D1B (ENSRBIG00000037629) #19	ENSRBIG00000034998 #20	UHMK1 (ENSRBIG00000044498) #21	UAP1 (ENSRBIG00000013912) #22	DDR2 (ENSRBIG00000043795) #23	HSD17B7 (ENSRBIG00000034771) #24
Golden snub-nosed monkey	MODERN SPECIES	3088																UAP1 (ENSRROG00000039072) #22	DDR2 (ENSRROG00000039159) #23
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.a.n #10	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.m #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b.a #22	ENSGT00940000154842.a.b #23	ENSGT00550000076417	ENSGT00390000013340 #24
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.m #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00950000183400	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b.a #22	ENSGT00940000154842.a.b #23	ENSGT00550000076417	ENSGT00390000013340 #24	ENSGT00390000009510	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b	ENSGT01100000263514.A.e.b	ENSGT00940000162155	ENSGT00940000160371	ENSGT00940000154756.A.vc	ENSGT00390000016274	ENSGT00390000006465	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT01050000244808.A.b.a.a.a.a.n #10	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.m #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b.a #22	ENSGT00940000154842.a.b #23	ENSGT00550000076417	ENSGT00390000013340 #24	ENSGT00390000009510.a	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b	ENSGT01100000263514.A.e.b	ENSGT00940000162155	ENSGT00940000160371	ENSGT00940000154756.A.vc	ENSGT00390000016274	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00390000006465	ENSGT01090000260005.a.a.a.b.a.a.a
Olive baboon	MODERN SPECIES		ENSPANG00000044353	CFAP126 (ENSPANG00000000423)	ENSPANG00000022189	ENSPANG00000000424 #10	HSPA6 (ENSPANG00000011199)	FCGR3A (ENSPANG00000009890) #9	FCRLA (ENSPANG00000005457) #11	FCRLB (ENSPANG00000007594) #12	DUSP12 (ENSPANG00000031950) #13	ATF6 (ENSPANG00000021910) #14	OLFML2B (ENSPANG00000013118) #15	ENSPANG00000023226 #17	SPATA46 (ENSPANG00000004524) #18	SH2D1B (ENSPANG00000041929) #19	UHMK1 (ENSPANG00000001321) #21	UAP1 (ENSPANG00000001322) #22	ENSPANG00000046218	DDR2 (ENSPANG00000011453) #23	ENSPANG00000045838	HSD17B7 (ENSPANG00000026079) #24	ENSPANG00000050063	H2BC26 (ENSPANG00000042066)	H2AC25 (ENSPANG00000039633)	H3-4 (ENSPANG00000032788)	TRIM17 (ENSPANG00000014849)	TRIM11 (ENSPANG00000004478)	ENSPANG00000035184	ENSPANG00000030630	IBA57 (ENSPANG00000021033)	GJC2 (ENSPANG00000035104)	ENSPANG00000020945
Cercopithecinae_d	ANCESTRAL SPECIES	33	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.m #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00950000183400	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b.a #22	ENSGT00940000154842.a.b #23	ENSGT00550000076417	ENSGT00390000013340 #24
Drill	MODERN SPECIES	1194	ENSMLEG00000039802 #10	ENSMLEG00000041835 #9	ENSMLEG00000015171 #10	FCRLA (ENSMLEG00000033079) #11	FCRLB (ENSMLEG00000030331) #12	DUSP12 (ENSMLEG00000038194) #13	ATF6 (ENSMLEG00000030589) #14	OLFML2B (ENSMLEG00000042987) #15	ENSMLEG00000027654	NOS1AP (ENSMLEG00000041632) ##17	SPATA46 (ENSMLEG00000044425) #18	C1orf226 (ENSMLEG00000031973) #17	SH2D1B (ENSMLEG00000037190) #19	ENSMLEG00000037007	UHMK1 (ENSMLEG00000038941) #21	UAP1 (ENSMLEG00000031971) #22	DDR2 (ENSMLEG00000037936) #23	ENSMLEG00000031905	HSD17B7 (ENSMLEG00000009439) #24
Sooty mangabey	MODERN SPECIES	144	ENSCATG00000033683 #9	ENSCATG00000030243 #10	FCRLA (ENSCATG00000042987) #11	FCRLB (ENSCATG00000044207) #12	DUSP12 (ENSCATG00000033548) #13	ATF6 (ENSCATG00000039639) #14	OLFML2B (ENSCATG00000016884) #15	ENSCATG00000014176	ENSCATG00000034528	ENSCATG00000031900	SPATA46 (ENSCATG00000038021) #18	ENSCATG00000026109 #17	SH2D1B (ENSCATG00000030003) #19	ENSCATG00000034357 #20	UHMK1 (ENSCATG00000037499) #21	UAP1 (ENSCATG00000038108) #22	DDR2 (ENSCATG00000020556) #23	ENSCATG00000034922	HSD17B7 (ENSCATG00000030953) #24
Macaca	ANCESTRAL SPECIES		ENSGT00390000000566.q.b.a	ENSGT00390000001092	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.n #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00950000183400	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b.a #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000009510	ENSGT01100000263474.a.b.b.e.b.a.b	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT00940000153092.a.a.c.b	ENSGT01100000263514.A.e.b	ENSGT00940000162155	ENSGT00940000160371	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00940000154756.A.vc	ENSGT00390000016274	ENSGT00390000006465	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815
Pig-tailed macaque	MODERN SPECIES	262	CFAP126 (ENSMNEG00000039106)	ENSMNEG00000038076	ENSMNEG00000035617 #10	HSPA6 (ENSMNEG00000034011)	ENSMNEG00000039329 #9	FCRLA (ENSMNEG00000039782) #11	FCRLB (ENSMNEG00000029566) #12	DUSP12 (ENSMNEG00000041603) #13	ATF6 (ENSMNEG00000033322) #14	OLFML2B (ENSMNEG00000039453) #15	ENSMNEG00000036127 #17	ENSMNEG00000033313	SPATA46 (ENSMNEG00000036208) #18	SH2D1B (ENSMNEG00000038294) #19	UHMK1 (ENSMNEG00000004169) #21	UAP1 (ENSMNEG00000039818) #22	DDR2 (ENSMNEG00000001558) #23	HSD17B7 (ENSMNEG00000039039) #24
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000160641	ENSGT00980000201983	ENSGT01030000234556.a.b.b	ENSGT00390000000566.q.b.a	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.n.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b.a #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000009510	ENSGT01100000263474.a.b.b.e.b.a.a	ENSGT01100000263514.A.f	ENSGT00940000162155	ENSGT00940000160371	ENSGT00440000034918.q.a.a.a.d.l.a.b	ENSGT00390000006465	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00940000155815	ENSGT00390000010309	ENSGT00390000005590	ENSGT00950000183080.a.b.a.b.b.`b	ENSGT00940000160510
Rhesus	MODERN SPECIES		ENSMMUG00000042475	MPZ (ENSMMUG00000001216)	SDHC (ENSMMUG00000012411)	CFAP126 (ENSMMUG00000008251)	FCGR3 (ENSMMUG00000016206) #9	FCGR2A (ENSMMUG00000003775) #10	FCRLA (ENSMMUG00000004042) #11	FCRLB (ENSMMUG00000056482) #12	ATF6 (ENSMMUG00000004049) #14	OLFML2B (ENSMMUG00000023042) #15	SPATA46 (ENSMMUG00000004790) #18	NOS1AP (ENSMMUG00000042262) #17	SH2D1B (ENSMMUG00000008511) #19	UHMK1 (ENSMMUG00000019513) #21	ENSMMUG00000063984	UAP1 (ENSMMUG00000019514) #22	DDR2 (ENSMMUG00000009330) #23	HSD17B7 (ENSMMUG00000009332) #24	RNF187 (ENSMMUG00000048590)	H2BC26 (ENSMMUG00000053022)	H3-4 (ENSMMUG00000055227)	TRIM17 (ENSMMUG00000005307)	TRIM11 (ENSMMUG00000005306)	ENSMMUG00000057834	GJC2 (ENSMMUG00000023086)	GUK1 (ENSMMUG00000023085)	C1H1orf35 (ENSMMUG00000002791)	ARF1 (ENSMMUG00000052432)	WNT3A (ENSMMUG00000050712)	WNT9A (ENSMMUG00000008338)	PRSS38 (ENSMMUG00000060353)
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000049823	ENSMFAG00000043175 #9	ENSMFAG00000038066 #10	ENSMFAG00000048559 #11	DUSP12 (ENSMFAG00000043743) #13	ENSMFAG00000059325 #10	ENSMFAG00000038697 #11	ENSMFAG00000040289 #12	ATF6 (ENSMFAG00000059314) #14	OLFML2B (ENSMFAG00000040313) #15	SPATA46 (ENSMFAG00000039214) #18	ENSMFAG00000042773 #17	SH2D1B (ENSMFAG00000040797) #19	ENSMFAG00000053016	UHMK1 (ENSMFAG00000041742) #21	UAP1 (ENSMFAG00000042529) #22	DDR2 (ENSMFAG00000036365) #23	ENSMFAG00000062302 #24	RNF187 (ENSMFAG00000035159)	H2BC26 (ENSMFAG00000049429)	ENSMFAG00000057302	ENSMFAG00000063754	TRIM17 (ENSMFAG00000001716)	TRIM11 (ENSMFAG00000042805)	ENSMFAG00000008386	IBA57 (ENSMFAG00000002470)	GUK1 (ENSMFAG00000039838)	MRPL55 (ENSMFAG00000064574)	C1orf35 (ENSMFAG00000045378)	ENSMFAG00000034073	WNT3A (ENSMFAG00000042689)
Vervet Monkey	MODERN SPECIES	12	MPZ (ENSCSAG00000002680)	CFAP126 (ENSCSAG00000002682)	ENSCSAG00000002687 #10	ENSCSAG00000002691 #9	ENSCSAG00000002694 #10	FCRLA (ENSCSAG00000002698) #11	FCRLB (ENSCSAG00000002704) #12	DUSP12 (ENSCSAG00000002716) #13	ENSCSAG00000000090	ATF6 (ENSCSAG00000002721) #14	OLFML2B (ENSCSAG00000002725) #15	SPATA46 (ENSCSAG00000002729) #18	ENSCSAG00000002735 #17	SH2D1B (ENSCSAG00000002739) #19	UHMK1 (ENSCSAG00000002742) #21	UAP1 (ENSCSAG00000002744) #22	DDR2 (ENSCSAG00000002747) #23	HSD17B7 (ENSCSAG00000002749) #24
Catarrhini	ANCESTRAL SPECIES																	ENSGT00940000153464.A.b.b #22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00940000153464.A.b.b #22
Hominidae	ANCESTRAL SPECIES																	ENSGT00940000153464.A.b.b #22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00940000153464.A.b.b #22
Homo/Pan group	ANCESTRAL SPECIES																	ENSGT00940000153464.A.b.b #22
Pan	ANCESTRAL SPECIES	3	ENSGT00940000155494	ENSGT00940000163306	ENSGT00940000158410	ENSGT00950000183080.a.b.a.a.e	ENSGT00530000064085	ENSGT00390000014122.i.b.a.a.a.a.c.a	ENSGT00940000157854	ENSGT00940000158599	ENSGT00950000183192.a.b	ENSGT00390000010523.c.a	ENSGT00530000063282.t.h.a.b.d	ENSGT00950000182950.C.a.a	ENSGT01030000234570.d.b.a.b.a	ENSGT01090000259987.b.b.a.a.b	ENSGT00390000004027	ENSGT00940000153464.A.b.b #22	ENSGT00940000155246.j.b.a	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397	ENSGT00940000157439	ENSGT00390000000603.b	ENSGT00940000161315	ENSGT00390000013474.b.a	ENSGT00940000161498	ENSGT00940000159590	ENSGT00390000011219	ENSGT00940000154534.a	ENSGT00390000000713.h.a.a.b	ENSGT00390000004405.b	ENSGT00950000182892.a.b.a.a
Chimpanzee	MODERN SPECIES	8	ENSPTRG00000048511	ENSPTRG00000050723	ENSPTRG00000009573	ENSPTRG00000009319	ENSPTRG00000051345	NSF (ENSPTRG00000009320)	WNT3 (ENSPTRG00000009321)	ENSPTRG00000009322	ENSPTRG00000009323	ENSPTRG00000052446	ENSPTRG00000051416	CDC27 (ENSPTRG00000009326)	MYL4 (ENSPTRG00000024314)	EFCAB13 (ENSPTRG00000009329)	ENSPTRG00000045761	ENSPTRG00000048037 #22	NPEPPS (ENSPTRG00000009330)	KPNB1 (ENSPTRG00000009333)	TBKBP1 (ENSPTRG00000009334)	TBX21 (ENSPTRG00000009335)	OSBPL7 (ENSPTRG00000009336)	MRPL10 (ENSPTRG00000009337)	LRRC46 (ENSPTRG00000009338)	SCRN2 (ENSPTRG00000009339)	SP6 (ENSPTRG00000009340)	SP2 (ENSPTRG00000009342)	PNPO (ENSPTRG00000009343)	PRR15L (ENSPTRG00000047216)	CDK5RAP3 (ENSPTRG00000009345)	COPZ2 (ENSPTRG00000009346)	NFE2L1 (ENSPTRG00000022631)
Bonobo	MODERN SPECIES	8	SPPL2C (ENSPPAG00000026104)	MAPT (ENSPPAG00000005022)	KANSL1 (ENSPPAG00000035503)	ENSPPAG00000037357	ENSPPAG00000020146	ENSPPAG00000031656	NSF (ENSPPAG00000030856)	WNT3 (ENSPPAG00000037563)	ENSPPAG00000033174	ENSPPAG00000004563	RPRML (ENSPPAG00000021337)	CDC27 (ENSPPAG00000035989)	MYL4 (ENSPPAG00000032176)	ITGB3 (ENSPPAG00000030328)	ENSPPAG00000019537	ENSPPAG00000041328 #22	ENSPPAG00000031240	ENSPPAG00000041383	KPNB1 (ENSPPAG00000028842)	ENSPPAG00000040088	TBX21 (ENSPPAG00000033988)	OSBPL7 (ENSPPAG00000027887)	MRPL10 (ENSPPAG00000034452)	LRRC46 (ENSPPAG00000038983)	SCRN2 (ENSPPAG00000028214)	SP6 (ENSPPAG00000026169)	SP2 (ENSPPAG00000027065)	PNPO (ENSPPAG00000038148)	PRR15L (ENSPPAG00000003316)	ENSPPAG00000029145	COPZ2 (ENSPPAG00000043351)
Gorilla	MODERN SPECIES	18	ENSGGOG00000041613	ENSGGOG00000039899	ENSGGOG00000023839	ENSGGOG00000043339	ENSGGOG00000041351	ENSGGOG00000026089	ENSGGOG00000040255	WNT3 (ENSGGOG00000007186)	WNT9B (ENSGGOG00000017083)	ENSGGOG00000001255	RPRML (ENSGGOG00000000099)	ENSGGOG00000040439	CDC27 (ENSGGOG00000014729)	MYL4 (ENSGGOG00000009722)	ITGB3 (ENSGGOG00000007757)	ENSGGOG00000023488 #22	EFCAB13 (ENSGGOG00000022715)	ENSGGOG00000022991	KPNB1 (ENSGGOG00000008089)	TBKBP1 (ENSGGOG00000002206)	TBX21 (ENSGGOG00000002208)	OSBPL7 (ENSGGOG00000015344)	MRPL10 (ENSGGOG00000015353)	LRRC46 (ENSGGOG00000012667)	SCRN2 (ENSGGOG00000004547)	SP6 (ENSGGOG00000036261)	SP2 (ENSGGOG00000005330)	PNPO (ENSGGOG00000003786)	PRR15L (ENSGGOG00000037816)	ENSGGOG00000022994	COPZ2 (ENSGGOG00000002264)
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00940000153464.A.b.b #22
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000153464.A.b.b #22
Black snub-nosed monkey	MODERN SPECIES	717													CDC27 (ENSRBIG00000037806)	MYL4 (ENSRBIG00000028988)	ITGB3 (ENSRBIG00000028310)	ENSRBIG00000044240 #22	ENSRBIG00000014557	EFCAB13 (ENSRBIG00000037369)	ENSRBIG00000041956	ENSRBIG00000019355	EFCAB3 (ENSRBIG00000032561)	ENSRBIG00000023555	ENSRBIG00000033312	TLK2 (ENSRBIG00000043769)	MRC2 (ENSRBIG00000008443)	MARCHF10 (ENSRBIG00000033353)	ENSRBIG00000041110	TANC2 (ENSRBIG00000043606)	CYB561 (ENSRBIG00000038628)	ACE (ENSRBIG00000024860)	KCNH6 (ENSRBIG00000029435)
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	6912										NOS1AP (ENSTSYG00000009370) ##17	SPATA46 (ENSTSYG00000009376) #18	ENSTSYG00000031818	SH2D1B (ENSTSYG00000007905) #19	ENSTSYG00000014457	UHMK1 (ENSTSYG00000011273) #21	UAP1 (ENSTSYG00000002725) #22	DDR2 (ENSTSYG00000003971) #23
Tarsier	MODERN SPECIES	6972															PRKG1 (ENSTSYG00000001463)	ENSTSYG00000030359 #22	DKK1 (ENSTSYG00000026512)
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00390000000566	ENSGT00390000001092	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d.a
Lemuriformes	ANCESTRAL SPECIES	11	ENSGT00390000000566	ENSGT00390000001092	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d.a
Mouse lemur	MODERN SPECIES	11	HSPA6 (ENSMICG00000003132)	ENSMICG00000027298 #9	ENSMICG00000032464	ENSMICG00000004499 #10	FCRLA (ENSMICG00000000037) #11	ENSMICG00000042673 #12	DUSP12 (ENSMICG00000035927) #13	ATF6 (ENSMICG00000000038) #14	OLFML2B (ENSMICG00000000040) #15	ENSMICG00000000045 #17	SPATA46 (ENSMICG00000000046) #18	SH2D1B (ENSMICG00000000048) #19	ENSMICG00000036205 #20	ENSMICG00000038236	ENSMICG00000017256 #21	UAP1 (ENSMICG00000028400) #22	DDR2 (ENSMICG00000009930) #23	HSD17B7 (ENSMICG00000009945) #24	CCDC190 (ENSMICG00000041856) #25	RGS4 (ENSMICG00000036693) #26	RGS5 (ENSMICG00000007854) #27	NUF2 (ENSMICG00000014089) #28	PBX1 (ENSMICG00000001280) #31	LMX1A (ENSMICG00000041533)	RXRG (ENSMICG00000009970)	LRRC52 (ENSMICG00000041448)	MGST3 (ENSMICG00000008309)	ENSMICG00000008315	ENSMICG00000037106	TMCO1 (ENSMICG00000004363)	ENSMICG00000044256
Lemuriformes_a	ANCESTRAL SPECIES	57	ENSGT00390000000566	ENSGT00390000001092	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d.a
Greater bamboo lemur	MODERN SPECIES	595		ENSPSMG00000004041 #10	FCRLA (ENSPSMG00000003945) #11	FCRLB (ENSPSMG00000003879) #12	DUSP12 (ENSPSMG00000003864) #13	ATF6 (ENSPSMG00000003827) #14	OLFML2B (ENSPSMG00000003729) #15	ENSPSMG00000003716	NOS1AP (ENSPSMG00000003703) ##17	SPATA46 (ENSPSMG00000003679) #18	C1orf226 (ENSPSMG00000003677) #17	SH2D1B (ENSPSMG00000003675) #19	ENSPSMG00000003671	ENSPSMG00000003669 #20	UHMK1 (ENSPSMG00000003662) #21	UAP1 (ENSPSMG00000003627) #22	DDR2 (ENSPSMG00000003597) #23	HSD17B7 (ENSPSMG00000003552) #24	CEP350 (ENSPSMG00000003480)	TOR1AIP1 (ENSPSMG00000003435)	ENSPSMG00000003421	TOR1AIP2 (ENSPSMG00000003413)	FAM163A (ENSPSMG00000003402)
Coquerels sifaka	MODERN SPECIES	163	CFAP126 (ENSPCOG00000005786)	ENSPCOG00000015447 #10	HSPA6 (ENSPCOG00000014242)	ENSPCOG00000018017 #9	ENSPCOG00000027185 #10	FCRLA (ENSPCOG00000005798) #11	FCRLB (ENSPCOG00000028493) #12	DUSP12 (ENSPCOG00000019591) #13	ENSPCOG00000019042 #14	OLFML2B (ENSPCOG00000006456) #15	NOS1AP (ENSPCOG00000016219) ##17	SPATA46 (ENSPCOG00000014075) #18	C1orf226 (ENSPCOG00000017829) #17	SH2D1B (ENSPCOG00000000648) #19	UHMK1 (ENSPCOG00000025540) #21	UAP1 (ENSPCOG00000012712) #22	DDR2 (ENSPCOG00000021216) #23	HSD17B7 (ENSPCOG00000024083) #24	CCDC190 (ENSPCOG00000014443) #25	RGS4 (ENSPCOG00000003407) #26	RGS5 (ENSPCOG00000020036) #27	NUF2 (ENSPCOG00000021915) #28	PBX1 (ENSPCOG00000015286) #31	LMX1A (ENSPCOG00000025376)	RXRG (ENSPCOG00000021935)	LRRC52 (ENSPCOG00000007315)	ENSPCOG00000021898	ALDH9A1 (ENSPCOG00000020786)	TMCO1 (ENSPCOG00000025294)	UCK2 (ENSPCOG00000015853)
Bushbaby	MODERN SPECIES	131	SDHC (ENSOGAG00000013748)	CFAP126 (ENSOGAG00000013751)	ENSOGAG00000015288 #9	ENSOGAG00000000585 #10	FCRLA (ENSOGAG00000000588) #11	FCRLB (ENSOGAG00000000589) #12	DUSP12 (ENSOGAG00000000590) #13	ATF6 (ENSOGAG00000001917) #14	OLFML2B (ENSOGAG00000001921) #15	NOS1AP (ENSOGAG00000001923) ##17	SPATA46 (ENSOGAG00000001926) #18	ENSOGAG00000031249	ENSOGAG00000032240	ENSOGAG00000026160 #20	UHMK1 (ENSOGAG00000016110) #21	UAP1 (ENSOGAG00000016117) #22	DDR2 (ENSOGAG00000010985) #23	HSD17B7 (ENSOGAG00000010994) #24	CCDC190 (ENSOGAG00000010997) #25	RGS4 (ENSOGAG00000012669) #26	RGS5 (ENSOGAG00000012674) #27	NUF2 (ENSOGAG00000011652) #28	PBX1 (ENSOGAG00000000132) #31	LMX1A (ENSOGAG00000011315)	RXRG (ENSOGAG00000011318)	LRRC52 (ENSOGAG00000026494)	MGST3 (ENSOGAG00000006196)	ENSOGAG00000006198	TMCO1 (ENSOGAG00000011784)	UCK2 (ENSOGAG00000014716)	ENSOGAG00000032359
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Glires	ANCESTRAL SPECIES		ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Rodentia	ANCESTRAL SPECIES		ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Rodentia_B	ANCESTRAL SPECIES		ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000165337	ENSGT00940000164616	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Myomorpha	ANCESTRAL SPECIES	16	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Muroidea	ANCESTRAL SPECIES	9	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000165337	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00860000135883	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.t #17	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00940000165337	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Golden Hamster	MODERN SPECIES	644		Fcgr4 (ENSMAUG00000018871) #9	ENSMAUG00000015313 #10	Fcrla (ENSMAUG00000016446) #11	Fcrlb (ENSMAUG00000016181) #12	Dusp12 (ENSMAUG00000010755) #13	Atf6 (ENSMAUG00000011288) #14	Olfml2b (ENSMAUG00000009203) #15	ENSMAUG00000009919	Nos1ap (ENSMAUG00000013773) ##17	Spata46 (ENSMAUG00000001643) #18	ENSMAUG00000012815 #17	ENSMAUG00000000846	ENSMAUG00000022031	Uhmk1 (ENSMAUG00000001735) #21	Uap1 (ENSMAUG00000001545) #22	Ddr2 (ENSMAUG00000001189) #23	Hsd17b7 (ENSMAUG00000021760) #24	Ccdc190 (ENSMAUG00000021696) #25	Rgs4 (ENSMAUG00000018633) #26	Rgs5 (ENSMAUG00000021837) #27	Nuf2 (ENSMAUG00000020433) #28	Pbx1 (ENSMAUG00000019850) #31	Lmx1a (ENSMAUG00000018894)	Rxrg (ENSMAUG00000019514)	Lrrc52 (ENSMAUG00000022044)	Mgst3 (ENSMAUG00000022162)	Aldh9a1 (ENSMAUG00000021995)	Tmco1 (ENSMAUG00000014853)	ENSMAUG00000011674	Uck2 (ENSMAUG00000005491)
Chinese hamster chok1gshd	MODERN SPECIES	2	ENSCGRG00001000910 #10	Fcgr4 (ENSCGRG00001009243) #9	ENSCGRG00001002401	ENSCGRG00001024979 #10	ENSCGRG00001012534	Fcrla (ENSCGRG00001007910) #11	Fcrlb (ENSCGRG00001012268) #12	Dusp12 (ENSCGRG00001013172) #13	Gm26620 (ENSCGRG00001002561)	Atf6 (ENSCGRG00001005537) #14	Olfml2b (ENSCGRG00001022621) #15	ENSCGRG00001002529 #17	Spata46 (ENSCGRG00001001942) #18	ENSCGRG00001004035	Uhmk1 (ENSCGRG00001013226) #21	Uap1 (ENSCGRG00001022983) #22	Ddr2 (ENSCGRG00001010683) #23	Hsd17b7 (ENSCGRG00001012734) #24	Ccdc190 (ENSCGRG00001017352) #25	Rgs4 (ENSCGRG00001021878) #26	Rgs5 (ENSCGRG00001009987) #27	Nuf2 (ENSCGRG00001014967) #28	Pbx1 (ENSCGRG00001022276) #31	Lmx1a (ENSCGRG00001014704)	Rxrg (ENSCGRG00001019006)	Lrrc52 (ENSCGRG00001014921)	Mgst3 (ENSCGRG00001016115)	Aldh9a1 (ENSCGRG00001023734)	Tmco1 (ENSCGRG00001024372)	Uck2 (ENSCGRG00001005584)	ENSCGRG00001016705
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00390000000566	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Prairie vole	MODERN SPECIES	14	ENSMOCG00000012280 #10	Fcgr4 (ENSMOCG00000008658) #9	ENSMOCG00000016405 #10	ENSMOCG00000019796 #11	Fcrlb (ENSMOCG00000000528) #12	Dusp12 (ENSMOCG00000008092) #13	Atf6 (ENSMOCG00000016442) #14	Olfml2b (ENSMOCG00000014122) #15	Nos1ap (ENSMOCG00000022978) ##17	Spata46 (ENSMOCG00000016091) #18	ENSMOCG00000015185 #17	ENSMOCG00000008286 #30	ENSMOCG00000014186	Uhmk1 (ENSMOCG00000008369) #21	ENSMOCG00000012566	Uap1 (ENSMOCG00000018085) #22	Ddr2 (ENSMOCG00000021294) #23	Hsd17b7 (ENSMOCG00000017459) #24	Ccdc190 (ENSMOCG00000019843) #25	ENSMOCG00000016099 #26	Lrtm1 (ENSMOCG00000004779)	Cacna2d3 (ENSMOCG00000020648)	Selenok (ENSMOCG00000009292)	Actr8 (ENSMOCG00000022198)	Il17rb (ENSMOCG00000000655)	Chdh (ENSMOCG00000001382)	ENSMOCG00000021702	Cacna1d (ENSMOCG00000015213)	Tkt (ENSMOCG00000009002)	Prkcd (ENSMOCG00000019091)	Rft1 (ENSMOCG00000014616)
Northern American deer mouse	MODERN SPECIES	2	ENSPEMG00000010624 #10	Fcgr4 (ENSPEMG00000008514) #9	ENSPEMG00000004069	ENSPEMG00000001576 #10	Fcrla (ENSPEMG00000009332) #11	Fcrlb (ENSPEMG00000002098) #12	Gm26620 (ENSPEMG00000024474)	Dusp12 (ENSPEMG00000000877) #13	Atf6 (ENSPEMG00000018229) #14	Olfml2b (ENSPEMG00000008167) #15	Nos1ap (ENSPEMG00000014465) ##17	Spata46 (ENSPEMG00000005249) #18	Gm7694 (ENSPEMG00000026884)	Uhmk1 (ENSPEMG00000001487) #21	ENSPEMG00000024044	Uap1 (ENSPEMG00000016224) #22	Ddr2 (ENSPEMG00000012156) #23	Hsd17b7 (ENSPEMG00000022786) #24	Ccdc190 (ENSPEMG00000023644) #25	Rgs4 (ENSPEMG00000031119) #26	Rgs5 (ENSPEMG00000025824) #27	Nuf2 (ENSPEMG00000023899) #28	ENSPEMG00000019682	Pbx1 (ENSPEMG00000009084) #31	Lmx1a (ENSPEMG00000016259)	Rxrg (ENSPEMG00000013249)	Lrrc52 (ENSPEMG00000025049)	Mgst3 (ENSPEMG00000012628)	Aldh9a1 (ENSPEMG00000007235)	Tmco1 (ENSPEMG00000008521)	Uck2 (ENSPEMG00000011469)
Murinae	ANCESTRAL SPECIES	11	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00940000164616	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Mus	ANCESTRAL SPECIES	5	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.eb #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00940000164616	ENSGT00940000163577.b #19	ENSGT00940000163577.a #19	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Mus_A	ANCESTRAL SPECIES	5	ENSGT01050000244808.A.b.a.a.a.a.eb #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577.b #19	ENSGT00940000163577.a #19	ENSGT00900000143287	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608.i	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Mus_B	ANCESTRAL SPECIES	7	ENSGT01050000244808.A.b.a.a.a.a.eb #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577.b #19	ENSGT00940000163577.a #19	ENSGT00900000143287	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608.i	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Mouse	MODERN SPECIES		Fcgr3 (ENSMUSG00000059498) #10	Fcgr4 (ENSMUSG00000059089) #9	Fcgr2b (ENSMUSG00000026656) #10	Fcrla (ENSMUSG00000038421) #11	Fcrlb (ENSMUSG00000070524) #12	Gm26620 (ENSMUSG00000096968)	Dusp12 (ENSMUSG00000026659) #13	Atf6 (ENSMUSG00000026663) #14	Olfml2b (ENSMUSG00000038463) #15	Spata46 (ENSMUSG00000042800) #18	Nos1ap (ENSMUSG00000038473) ##17	Gm7694 (ENSMUSG00000102752)	Sh2d1b1 (ENSMUSG00000102418) #19	Sh2d1b2 (ENSMUSG00000073494) #19	Uhmk1 (ENSMUSG00000026667) #21	Uap1 (ENSMUSG00000026670) #22	Ddr2 (ENSMUSG00000026674) #23	Hsd17b7 (ENSMUSG00000026675) #24	Ccdc190 (ENSMUSG00000070532) #25	Rgs4 (ENSMUSG00000038530) #26	Rgs5 (ENSMUSG00000026678) #27	Nuf2 (ENSMUSG00000026683) #28	Pbx1 (ENSMUSG00000052534) #31	Lmx1a (ENSMUSG00000026686)	Rxrg (ENSMUSG00000015843)	Lrrc52 (ENSMUSG00000040485)	Mgst3 (ENSMUSG00000026688)	Aldh9a1 (ENSMUSG00000026687)	Tmco1 (ENSMUSG00000052428)	Uck2 (ENSMUSG00000026558)	Fam78b (ENSMUSG00000060568)
Mus_C	ANCESTRAL SPECIES	1	ENSGT01050000244808.A.b.a.a.a.a.eb #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577.b #19	ENSGT00940000163577.a #19	ENSGT00900000143287	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608.i	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Steppe mouse	MODERN SPECIES	3030	ENSMSIG00000013493	Fcgr2b (ENSMSIG00000013209) #10	Fcrla (ENSMSIG00000013140) #11	Fcrlb (ENSMSIG00000013130) #12	Gm26620 (ENSMSIG00000013120)	Dusp12 (ENSMSIG00000013104) #13	Atf6 (ENSMSIG00000013034) #14	Olfml2b (ENSMSIG00000013009) #15	ENSMSIG00000013007	Spata46 (ENSMSIG00000012994) #18	ENSMSIG00000012883 #17	Sh2d1b1 (ENSMSIG00000012861) #19	Sh2d1b2 (ENSMSIG00000012848) #19	ENSMSIG00000012838	Uhmk1 (ENSMSIG00000012729) #21	Uap1 (ENSMSIG00000012696) #22	Ddr2 (ENSMSIG00000012540) #23	Hsd17b7 (ENSMSIG00000012507) #24	Ccdc190 (ENSMSIG00000012470) #25	Rgs4 (ENSMSIG00000012434) #26	Rgs5 (ENSMSIG00000012409) #27	ENSMSIG00000012391	Nuf2 (ENSMSIG00000012309) #28
spretus	MODERN SPECIES		Sdhc (MGP_SPRETEiJ_G0015657)	Cfap126 (MGP_SPRETEiJ_G0015656)	Fcgr3 (MGP_SPRETEiJ_G0015655) #10	Fcgr4 (MGP_SPRETEiJ_G0015654) #9	Fcgr2b (MGP_SPRETEiJ_G0015653) #10	Fcrla (MGP_SPRETEiJ_G0015652) #11	Fcrlb (MGP_SPRETEiJ_G0015651) #12	Gm26620 (MGP_SPRETEiJ_G0015650)	Dusp12 (MGP_SPRETEiJ_G0015649) #13	Atf6 (MGP_SPRETEiJ_G0015648) #14	Olfml2b (MGP_SPRETEiJ_G0015647) #15	Spata46 (MGP_SPRETEiJ_G0015646) #18	Nos1ap (MGP_SPRETEiJ_G0015645) ##17	Gm7694 (MGP_SPRETEiJ_G0015644)	MGP_SPRETEiJ_G0015643 #21	Uap1 (MGP_SPRETEiJ_G0015642) #22	Ddr2 (MGP_SPRETEiJ_G0015641) #23	Hsd17b7 (MGP_SPRETEiJ_G0015640) #24	Ccdc190 (MGP_SPRETEiJ_G0015639) #25	Rgs4 (MGP_SPRETEiJ_G0015638) #26	Rgs5 (MGP_SPRETEiJ_G0015637) #27	Nuf2 (MGP_SPRETEiJ_G0015636) #28	Pbx1 (MGP_SPRETEiJ_G0015635) #31	Lmx1a (MGP_SPRETEiJ_G0015634)	Rxrg (MGP_SPRETEiJ_G0015633)	Lrrc52 (MGP_SPRETEiJ_G0015632)	Mgst3 (MGP_SPRETEiJ_G0015631)	Aldh9a1 (MGP_SPRETEiJ_G0015630)	Tmco1 (MGP_SPRETEiJ_G0015629)	Uck2 (MGP_SPRETEiJ_G0015628)	Fam78b (MGP_SPRETEiJ_G0015627)
Ryukyu mouse	MODERN SPECIES		Cfap126 (MGP_CAROLIEiJ_G0014851)	Fcgr4 (MGP_CAROLIEiJ_G0014850) #9	Fcgr2b (MGP_CAROLIEiJ_G0014849) #10	Fcrla (MGP_CAROLIEiJ_G0014848) #11	Fcrlb (MGP_CAROLIEiJ_G0014847) #12	Gm26620 (MGP_CAROLIEiJ_G0014846)	Dusp12 (MGP_CAROLIEiJ_G0014845) #13	Atf6 (MGP_CAROLIEiJ_G0014844) #14	Olfml2b (MGP_CAROLIEiJ_G0014843) #15	Spata46 (MGP_CAROLIEiJ_G0014842) #18	Nos1ap (MGP_CAROLIEiJ_G0014841) ##17	Gm7694 (MGP_CAROLIEiJ_G0014840)	Sh2d1b1 (MGP_CAROLIEiJ_G0014839) #19	Sh2d1b2 (MGP_CAROLIEiJ_G0014838) #19	MGP_CAROLIEiJ_G0014837 #21	Uap1 (MGP_CAROLIEiJ_G0014836) #22	Ddr2 (MGP_CAROLIEiJ_G0014835) #23	Hsd17b7 (MGP_CAROLIEiJ_G0014834) #24	Ccdc190 (MGP_CAROLIEiJ_G0014833) #25	Rgs4 (MGP_CAROLIEiJ_G0014832) #26	Rgs5 (MGP_CAROLIEiJ_G0014831) #27	Nuf2 (MGP_CAROLIEiJ_G0014830) #28	Pbx1 (MGP_CAROLIEiJ_G0014829) #31	Lmx1a (MGP_CAROLIEiJ_G0014828)	Rxrg (MGP_CAROLIEiJ_G0014827)	Lrrc52 (MGP_CAROLIEiJ_G0014826)	Mgst3 (MGP_CAROLIEiJ_G0014825)	Aldh9a1 (MGP_CAROLIEiJ_G0014824)	MGP_CAROLIEiJ_G0014823	Uck2 (MGP_CAROLIEiJ_G0014822)	Fam78b (MGP_CAROLIEiJ_G0014821)
Shrew mouse	MODERN SPECIES	18	MGP_PahariEiJ_G0028088 #10	Fcgr4 (MGP_PahariEiJ_G0028087) #9	Fcgr2b (MGP_PahariEiJ_G0028086) #10	Fcrla (MGP_PahariEiJ_G0028085) #11	Fcrlb (MGP_PahariEiJ_G0028084) #12	Gm26620 (MGP_PahariEiJ_G0028083)	Dusp12 (MGP_PahariEiJ_G0028082) #13	Atf6 (MGP_PahariEiJ_G0028081) #14	Olfml2b (MGP_PahariEiJ_G0028080) #15	Spata46 (MGP_PahariEiJ_G0028079) #18	Nos1ap (MGP_PahariEiJ_G0028078) ##17	Gm7694 (MGP_PahariEiJ_G0028077)	MGP_PahariEiJ_G0028076 #19	Sh2d1b2 (MGP_PahariEiJ_G0028075) #19	Uhmk1 (MGP_PahariEiJ_G0028074) #21	Uap1 (MGP_PahariEiJ_G0028073) #22	Ddr2 (MGP_PahariEiJ_G0028072) #23	Hsd17b7 (MGP_PahariEiJ_G0028071) #24	Ccdc190 (MGP_PahariEiJ_G0028070) #25	Rgs4 (MGP_PahariEiJ_G0028069) #26	Rgs5 (MGP_PahariEiJ_G0028068) #27	Nuf2 (MGP_PahariEiJ_G0028067) #28	Pbx1 (MGP_PahariEiJ_G0028066) #31	Lmx1a (MGP_PahariEiJ_G0028065)	Rxrg (MGP_PahariEiJ_G0028064)	Lrrc52 (MGP_PahariEiJ_G0028063)	Mgst3 (MGP_PahariEiJ_G0028062)	Aldh9a1 (MGP_PahariEiJ_G0028061)	MGP_PahariEiJ_G0028060	Uck2 (MGP_PahariEiJ_G0028059)	Fam78b (MGP_PahariEiJ_G0028058)
Rat	DUPLICATION
Rat	MODERN SPECIES	4	Fcgr3a (ENSRNOG00000024382) #9	Fcgr2b (ENSRNOG00000046452) #10	Fcrla (ENSRNOG00000003136) #11	Fcrlb (ENSRNOG00000003135) #12	Dusp12 (ENSRNOG00000003100) #13	LOC100362384 (ENSRNOG00000031540)	LOC100911728 (ENSRNOG00000063975)	Atf6 (ENSRNOG00000024632) #14	Olfml2b (ENSRNOG00000003018) #15	AABR07021736.1 (ENSRNOG00000034300)	Spata46 (ENSRNOG00000002972) #18	Nos1ap (ENSRNOG00000042929) ##17	Sh2d1b2 (ENSRNOG00000069420) #19	AABR07021734.1 (ENSRNOG00000059957)	Uhmk1 (ENSRNOG00000002941) #21	Uap1 (ENSRNOG00000002926) #22	Ddr2 (ENSRNOG00000002881) #23	Hsd17b7 (ENSRNOG00000002826) #24	ENSRNOG00000033515	Ccdc190 (ENSRNOG00000025005) #25	Rgs4 (ENSRNOG00000002773) #26	Rgs5 (ENSRNOG00000002730) #27	ENSRNOG00000066769	Nuf2 (ENSRNOG00000002711) #28	Pbx1 (ENSRNOG00000070119) #31	Lmx1a (ENSRNOG00000004642)	Rxrg (ENSRNOG00000004537)	Lrrc52 (ENSRNOG00000004356)	Mgst3 (ENSRNOG00000004245)	Aldh9a1 (ENSRNOG00000004027)	Tmco1 (ENSRNOG00000003928)
Rat	MODERN SPECIES	16	Msh2 (ENSRNOG00000015796)	Kcnk12 (ENSRNOG00000016110)	Msh6 (ENSRNOG00000016134)	Fbxo11 (ENSRNOG00000016396)	H2az1-ps2 (ENSRNOG00000031564)	Foxn2 (ENSRNOG00000040110)	Ppp1r21 (ENSRNOG00000016528)	Ston1 (ENSRNOG00000016688)	Gtf2a1l (ENSRNOG00000016703)	Lhcgr (ENSRNOG00000016712)	Fshr (ENSRNOG00000016783)	ENSRNOG00000070800	ENSRNOG00000070393	ENSRNOG00000069544	Nrxn1 (ENSRNOG00000050220)	AABR07063082.1 (ENSRNOG00000031342) #22	ENSRNOG00000067942	Crnkl1-ps1 (ENSRNOG00000040045)	AABR07063126.1 (ENSRNOG00000002495)	Mtm1 (ENSRNOG00000002516)	Alkbh8 (ENSRNOG00000024525)	Cwf19l2 (ENSRNOG00000024372)	AABR07064590.1 (ENSRNOG00000050408)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1470	ENSNGAG00000017696 #10	ENSNGAG00000014287	Fcgr4 (ENSNGAG00000021092) #9	ENSNGAG00000011371 #10	ENSNGAG00000004618 #11	Fcrlb (ENSNGAG00000012219) #12	Gm26620 (ENSNGAG00000015352)	Dusp12 (ENSNGAG00000013271) #13	Atf6 (ENSNGAG00000012357) #14	Olfml2b (ENSNGAG00000011890) #15	Nos1ap (ENSNGAG00000017936) ##17	Spata46 (ENSNGAG00000017281) #18	ENSNGAG00000019543 #17	ENSNGAG00000007636	Uhmk1 (ENSNGAG00000014202) #21	Uap1 (ENSNGAG00000017391) #22	Ddr2 (ENSNGAG00000011070) #23	Hsd17b7 (ENSNGAG00000018750) #24	Ccdc190 (ENSNGAG00000000184) #25
Lesser Egyptian jerboa	MODERN SPECIES	99		ENSJJAG00000019454 #10	Fcgr4 (ENSJJAG00000022025) #9	ENSJJAG00000023172 #10	Fcrla (ENSJJAG00000016094) #11	Fcrlb (ENSJJAG00000017591) #12	ENSJJAG00000019034 #13	Atf6 (ENSJJAG00000020891) #14	ENSJJAG00000001331	Olfml2b (ENSJJAG00000006072) #15	Nos1ap (ENSJJAG00000011196) ##17	Spata46 (ENSJJAG00000014177) #18	ENSJJAG00000014680 #17	Uhmk1 (ENSJJAG00000015993) #21	ENSJJAG00000017644	Uap1 (ENSJJAG00000021659) #22	Ddr2 (ENSJJAG00000010116) #23	Hsd17b7 (ENSJJAG00000012148) #24	Ccdc190 (ENSJJAG00000013635) #25	Rgs4 (ENSJJAG00000014256) #26	Rgs5 (ENSJJAG00000015242) #27	Nuf2 (ENSJJAG00000015135) #28	ENSJJAG00000017273	ENSJJAG00000018522	Cadm2 (ENSJJAG00000001556)	ENSJJAG00000011025	ENSJJAG00000001124	Vgll3 (ENSJJAG00000008774)	Chmp2b (ENSJJAG00000010165)	Pou1f1 (ENSJJAG00000011761)	Htr1f (ENSJJAG00000013994)
Kangaroo rat	MODERN SPECIES	376	Pdc (ENSDORG00000002197)	Odr4 (ENSDORG00000004797)	ENSDORG00000004792	ENSDORG00000028414	ENSDORG00000004789	Hmcn1 (ENSDORG00000000927)	Ivns1abp (ENSDORG00000010533)	Swt1 (ENSDORG00000010531)	Trmt1l (ENSDORG00000003298)	Rnf2 (ENSDORG00000003231)	ENSDORG00000013136	Edem3 (ENSDORG00000015760)	1700025G04Rik (ENSDORG00000028610)	ENSDORG00000000004	Uhmk1 (ENSDORG00000011233) #21	Uap1 (ENSDORG00000005510) #22	Ddr2 (ENSDORG00000004970) #23	Hsd17b7 (ENSDORG00000004971) #24	Ccdc190 (ENSDORG00000004973) #25	Rgs4 (ENSDORG00000008241) #26	Rgs5 (ENSDORG00000025285) #27	Nuf2 (ENSDORG00000010505) #28	Pbx1 (ENSDORG00000012241) #31	Lmx1a (ENSDORG00000014036)	Rxrg (ENSDORG00000014034)	Lrrc52 (ENSDORG00000013852)	Mgst3 (ENSDORG00000005319)	Aldh9a1 (ENSDORG00000012670)	Tmco1 (ENSDORG00000024383)	Uck2 (ENSDORG00000024295)	Fam78b (ENSDORG00000026622)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000001092	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00390000001092	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Hystricomorpha_a	ANCESTRAL SPECIES	11	ENSGT00390000001092	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Hystricomorpha_b	ANCESTRAL SPECIES	8	ENSGT01030000234556.a.b.b	ENSGT00390000000566	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	179	HSPA5 (ENSODEG00000003702)	RABEPK (ENSODEG00000003723)	ENSODEG00000003752	ENSODEG00000003771	SCAI (ENSODEG00000003843)	GOLGA1 (ENSODEG00000003980)	ENSODEG00000004095	ENSODEG00000004120	OLFML2A (ENSODEG00000004138)	NR6A1 (ENSODEG00000004183)	ENSODEG00000004234	NR5A1 (ENSODEG00000004244)	ENSODEG00000004257	ENSODEG00000019019	NEK6 (ENSODEG00000004126)	ENSODEG00000004179 #22	LHX2 (ENSODEG00000004212)	DENND1A (ENSODEG00000004310)	CRB2 (ENSODEG00000004481)	ENSODEG00000019097	ENSODEG00000004632	RABGAP1 (ENSODEG00000004811)	ENSODEG00000019246	ENSODEG00000019228	ZBTB26 (ENSODEG00000005887)	ZBTB6 (ENSODEG00000019273)	ENSODEG00000005918	PDCL (ENSODEG00000005932)	ENSODEG00000006008	ENSODEG00000006020	ENSODEG00000006064
Degu	MODERN SPECIES	78	TTLL9 (ENSODEG00000011360)	DUSP15 (ENSODEG00000011813)	FOXS1 (ENSODEG00000020017)	MYLK2 (ENSODEG00000013441)	ENSODEG00000011442	TPX2 (ENSODEG00000012321)	BCL2L1 (ENSODEG00000011428)	ENSODEG00000019781	COX4I2 (ENSODEG00000012477)	ID1 (ENSODEG00000012592)	MCTS2 (ENSODEG00000011493)	HM13 (ENSODEG00000012125)	ENSODEG00000011012	REM1 (ENSODEG00000012458)	DEFB124 (ENSODEG00000011947)	ENSODEG00000010872 #22	DEFB123 (ENSODEG00000011781)	ENSODEG00000012410	DEFB119 (ENSODEG00000011255)	ENSODEG00000012325	DEFB128 (ENSODEG00000014590)	ENSODEG00000019969	C20orf96 (ENSODEG00000011348)	ZCCHC3 (ENSODEG00000010730)	SOX12 (ENSODEG00000020040)	NRSN2 (ENSODEG00000011631)	TRIB3 (ENSODEG00000010963)	RBCK1 (ENSODEG00000010172)	TBC1D20 (ENSODEG00000010895)	ENSODEG00000011479	ENSODEG00000019802
Degu	DUPLICATION
Degu	MODERN SPECIES	157	ENSODEG00000007553 #11	FCRLB (ENSODEG00000007543) #12	DUSP12 (ENSODEG00000008746) #13	ENSODEG00000007639	ENSODEG00000019524	ATF6 (ENSODEG00000006653) #14	OLFML2B (ENSODEG00000007482) #15	NOS1AP (ENSODEG00000009278) ##17	SPATA46 (ENSODEG00000007496) #18	C1orf226 (ENSODEG00000007727) #17	ENSODEG00000007269	ENSODEG00000006619	ENSODEG00000006566	UHMK1 (ENSODEG00000006380) #21	ENSODEG00000007230	ENSODEG00000006482 #22	ENSODEG00000006001	DDR2 (ENSODEG00000005987) #23	HSD17B7 (ENSODEG00000007036) #24	CCDC190 (ENSODEG00000007128) #25	ENSODEG00000006225	RGS4 (ENSODEG00000007399) #26	RGS5 (ENSODEG00000006436) #27	NUF2 (ENSODEG00000006206) #28	PBX1 (ENSODEG00000008268) #31	LMX1A (ENSODEG00000006784)	RXRG (ENSODEG00000007429)	LRRC52 (ENSODEG00000007590)	MGST3 (ENSODEG00000008534)	ALDH9A1 (ENSODEG00000006714)	TMCO1 (ENSODEG00000006261)
Degu	MODERN SPECIES	122	COL8A1 (ENSODEG00000004998)	ENSODEG00000006867	DCBLD2 (ENSODEG00000005751)	ENSODEG00000005393	ENSODEG00000019181	ENSODEG00000019164	ENSODEG00000005746	CPOX (ENSODEG00000004750)	GPR15 (ENSODEG00000019236)	ENSODEG00000005283	ENSODEG00000005152	ENSODEG00000019229	NPSR1 (ENSODEG00000005018)	ENSODEG00000005414	ENSODEG00000004808	ENSODEG00000005165 #22	ENSODEG00000004827	ENSODEG00000019232	ENSODEG00000004814	ZNF25 (ENSODEG00000005495)	ZNF248 (ENSODEG00000004951)	BMS1 (ENSODEG00000005554)	RET (ENSODEG00000004491)	CSGALNACT2 (ENSODEG00000005562)	RASGEF1A (ENSODEG00000004726)	ENSODEG00000004747	ENSODEG00000006180	ENSODEG00000019266	ENSODEG00000005547	CXCL12 (ENSODEG00000005442)	TMEM72 (ENSODEG00000005215)
Long-tailed chinchilla	MODERN SPECIES	169			HSPA6 (ENSCLAG00000012873)	ENSCLAG00000012099	ENSCLAG00000007260 #9	ENSCLAG00000006167 #10	FCRLA (ENSCLAG00000004447) #11	FCRLB (ENSCLAG00000006704) #12	DUSP12 (ENSCLAG00000010307) #13	ATF6 (ENSCLAG00000012192) #14	OLFML2B (ENSCLAG00000012343) #15	SPATA46 (ENSCLAG00000006220) #18	ENSCLAG00000016599 #17	SH2D1B (ENSCLAG00000005824) #19	ENSCLAG00000004715 #21	UAP1 (ENSCLAG00000007532) #22	DDR2 (ENSCLAG00000008308) #23	HSD17B7 (ENSCLAG00000005057) #24	CCDC190 (ENSCLAG00000006720) #25	RGS4 (ENSCLAG00000009055) #26	RGS5 (ENSCLAG00000006523) #27	NUF2 (ENSCLAG00000009748) #28	PBX1 (ENSCLAG00000009776) #31	LMX1A (ENSCLAG00000006865)	RXRG (ENSCLAG00000007511)	LRRC52 (ENSCLAG00000006632)	MGST3 (ENSCLAG00000007690)	ENSCLAG00000006096	TMCO1 (ENSCLAG00000004923)	ENSCLAG00000004400	UCK2 (ENSCLAG00000010692)
Guinea pig	MODERN SPECIES	39															UHMK1 (ENSCPOG00000004561) #21	UAP1 (ENSCPOG00000004568) #22	DDR2 (ENSCPOG00000009721) #23	HSD17B7 (ENSCPOG00000030957) #24	CCDC190 (ENSCPOG00000038251) #25	RGS4 (ENSCPOG00000031194) #26	RGS5 (ENSCPOG00000033467) #27	ENSCPOG00000039704	NUF2 (ENSCPOG00000015019) #28	PBX1 (ENSCPOG00000005958) #31	ENSCPOG00000038291	LMX1A (ENSCPOG00000025320)	RXRG (ENSCPOG00000015343)	LRRC52 (ENSCPOG00000015344)	MGST3 (ENSCPOG00000015346)	ALDH9A1 (ENSCPOG00000015347)	TMCO1 (ENSCPOG00000013728)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	20	SDHC (ENSHGLG00000049173)	CFAP126 (ENSHGLG00000010619)	ENSHGLG00000045344 #10	HSPA6 (ENSHGLG00000002619)	ENSHGLG00000002720 #9	ENSHGLG00000014734 #10	FCRLA (ENSHGLG00000019609) #11	FCRLB (ENSHGLG00000019604) #12	DUSP12 (ENSHGLG00000038411) #13	ENSHGLG00000019948	ATF6 (ENSHGLG00000019506) #14	OLFML2B (ENSHGLG00000002985) #15	SPATA46 (ENSHGLG00000032913) #18	ENSHGLG00000003369 #17	ENSHGLG00000004032 #21	ENSHGLG00000013192 #22	DDR2 (ENSHGLG00000007636) #23	HSD17B7 (ENSHGLG00000009322) #24	RGS4 (ENSHGLG00000044423) #26	ENSHGLG00000035946	ENSHGLG00000032628	Rgs5 (ENSHGLG00000042926) #27	NUF2 (ENSHGLG00000003907) #28	PBX1 (ENSHGLG00000004849) #31	LMX1A (ENSHGLG00000003212)	LRRC52 (ENSHGLG00000003658)	RXRG (ENSHGLG00000003380)	MGST3 (ENSHGLG00000003866)	ALDH9A1 (ENSHGLG00000004082)	ENSHGLG00000004945	ENSHGLG00000031882
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000013973	COPS4 (ENSHGLG00000044616)	PLAC8 (ENSHGLG00000016121)	ENSHGLG00000049647	ENSHGLG00000016197	HPSE (ENSHGLG00000018930)	HELQ (ENSHGLG00000019137)	ENSHGLG00000036989	ENSHGLG00000036220	ENSHGLG00000037131	Gpat3 (ENSHGLG00000003421)	ENSHGLG00000043322	ENSHGLG00000045281	ENSHGLG00000037327	ENSHGLG00000035706	ENSHGLG00000004204 #22	ENSHGLG00000004589	CDS1 (ENSHGLG00000049384)	WDFY3 (ENSHGLG00000002966)	ENSHGLG00000041678	ENSHGLG00000000796	ENSHGLG00000000768	ENSHGLG00000019846	ENSHGLG00000001024	ENSHGLG00000000901	ENSHGLG00000046052	ENSHGLG00000034553	ENSHGLG00000019806	ENSHGLG00000005605	ENSHGLG00000001145	SLC10A6 (ENSHGLG00000001287)
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000164616	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b	ENSGT00940000160836.d
Marmotini	ANCESTRAL SPECIES	34	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.a.ub #10	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.tb #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b	ENSGT00940000160836.d
Marmotini_b	ANCESTRAL SPECIES	261											ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24
Squirrel	MODERN SPECIES	431										OLFML2B (ENSSTOG00000025327) #15	NOS1AP (ENSSTOG00000010583) ##17	SPATA46 (ENSSTOG00000010590) #18	C1orf226 (ENSSTOG00000034532) #17	UHMK1 (ENSSTOG00000004265) #21	ENSSTOG00000021540	UAP1 (ENSSTOG00000000912) #22	DDR2 (ENSSTOG00000011612) #23	HSD17B7 (ENSSTOG00000024820) #24	ENSSTOG00000032719
Arctic ground squirrel	MODERN SPECIES	551								OLFML2B (ENSUPAG00010006603) #15	ENSUPAG00010006598	SPATA46 (ENSUPAG00010006589) #18	NOS1AP (ENSUPAG00010006567) ##17	SH2D1B (ENSUPAG00010006548) #19	ENSUPAG00010006542	UHMK1 (ENSUPAG00010006521) #21	ENSUPAG00010006515	UAP1 (ENSUPAG00010006475) #22	DDR2 (ENSUPAG00010006446) #23	HSD17B7 (ENSUPAG00010006435) #24	ENSUPAG00010006429
Alpin marmot	MODERN SPECIES	29	HSPA6 (ENSMMMG00000021953)	ENSMMMG00000021951 #9	ENSMMMG00000021940 #10	FCRLA (ENSMMMG00000021939) #11	FCRLB (ENSMMMG00000021937) #12	ENSMMMG00000021932	ATF6 (ENSMMMG00000021922) #14	OLFML2B (ENSMMMG00000021911) #15	ENSMMMG00000021908	NOS1AP (ENSMMMG00000021891) ##17	SPATA46 (ENSMMMG00000021885) #18	ENSMMMG00000021881	SH2D1B (ENSMMMG00000021878) #19	ENSMMMG00000021868	UHMK1 (ENSMMMG00000021840) #21	UAP1 (ENSMMMG00000021814) #22	DDR2 (ENSMMMG00000021769) #23	HSD17B7 (ENSMMMG00000021761) #24	RGS4 (ENSMMMG00000021742) #26	RGS5 (ENSMMMG00000021737) #27	NUF2 (ENSMMMG00000021710) #28	PBX1 (ENSMMMG00000021655) #31	LMX1A (ENSMMMG00000021633)	RXRG (ENSMMMG00000021608)	LRRC52 (ENSMMMG00000021599)	MGST3 (ENSMMMG00000021590)	ENSMMMG00000020694	TMCO1 (ENSMMMG00000020681)	ENSMMMG00000020677	UCK2 (ENSMMMG00000020655)	FAM78B (ENSMMMG00000020648)
Eurasian red squirrel	MODERN SPECIES		ENSSVLG00005013804 #9	ENSSVLG00005014017 #10	ENSSVLG00005014192	FCRLA (ENSSVLG00005014309) #11	FCRLB (ENSSVLG00005014686) #12	ENSSVLG00005014879 #13	ENSSVLG00005014905	ATF6 (ENSSVLG00005014934) #14	ENSSVLG00005014975	OLFML2B (ENSSVLG00005015059) #15	ENSSVLG00005015160 #17	ENSSVLG00005015344	SPATA46 (ENSSVLG00005015397) #18	SH2D1B (ENSSVLG00005015442) #19	UHMK1 (ENSSVLG00005005691) #21	UAP1 (ENSSVLG00005005747) #22	DDR2 (ENSSVLG00005005804) #23	HSD17B7 (ENSSVLG00005005883) #24	ENSSVLG00005005907	SPIDR (ENSSVLG00005005941)	ENSSVLG00005006182	SUPT3H (ENSSVLG00005006225)	CEBPD (ENSSVLG00005006258)	MCM4 (ENSSVLG00005006762)	UBE2V2 (ENSSVLG00005006994)	ENSSVLG00005007040	ENSSVLG00005007058	ENSSVLG00005007072	CLXN (ENSSVLG00005007101)	ENSSVLG00005007144	SNAI2 (ENSSVLG00005007170)
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00940000160641	ENSGT00530000064299	ENSGT01030000234556.a.b.b	ENSGT00390000000566	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.t #17	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b	ENSGT00940000160836.d
Rabbit	MODERN SPECIES	4	CFAP126 (ENSOCUG00000014435)	ENSOCUG00000027815 #9	ENSOCUG00000035695 #10	ENSOCUG00000024349 #9	ENSOCUG00000011685 #10	FCRLA (ENSOCUG00000007906) #11	FCRLB (ENSOCUG00000007914) #12	DUSP12 (ENSOCUG00000007924) #13	ATF6 (ENSOCUG00000007930) #14	OLFML2B (ENSOCUG00000003594) #15	SPATA46 (ENSOCUG00000007698) #18	ENSOCUG00000027759 #17	ENSOCUG00000039230	ENSOCUG00000006287	UHMK1 (ENSOCUG00000012411) #21	UAP1 (ENSOCUG00000015579) #22	HMGB1 (ENSOCUG00000022718)	DDR2 (ENSOCUG00000011443) #23	CCDC190 (ENSOCUG00000009524) #25	ENSOCUG00000023193	RGS4 (ENSOCUG00000005204) #26	RGS5 (ENSOCUG00000001169) #27	NUF2 (ENSOCUG00000001171) #28	PBX1 (ENSOCUG00000007609) #31	LMX1A (ENSOCUG00000005509)	RXRG (ENSOCUG00000005512)	LRRC52 (ENSOCUG00000005518)	MGST3 (ENSOCUG00000010376)	ENSOCUG00000010380	ENSOCUG00000008441	UCK2 (ENSOCUG00000008446)
Pika	MODERN SPECIES	8988																UAP1 (ENSOPRG00000014406) #22
Tree shrew	MODERN SPECIES	710																UAP1 (ENSTBEG00000009264) #22
Laurasiatheria	ANCESTRAL SPECIES		ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00910000148347	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000163762.a.a	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000153464.A.b #22
Hedgehog	MODERN SPECIES	1882																ENSEEUG00000006718 #22
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00910000148347	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000163762.a.a	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00910000148347	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d
Suina	ANCESTRAL SPECIES	8	ENSGT00390000001092	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00910000148347	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d
Pig	MODERN SPECIES	12	ENSSSCG00000053490 #10	HSPA6 (ENSSSCG00000047932)	ENSSSCG00000036618 #9	ENSSSCG00000006350 #10	FCRLA (ENSSSCG00000030246) #11	FCRLB (ENSSSCG00000006348) #12	ENSSSCG00000039073	DUSP12 (ENSSSCG00000006347) #13	ATF6 (ENSSSCG00000006346) #14	OLFML2B (ENSSSCG00000006345) #15	SPATA46 (ENSSSCG00000006343) #18	ENSSSCG00000006344 #17	ENSSSCG00000032108	ENSSSCG00000046961 #20	UHMK1 (ENSSSCG00000006342) #21	UAP1 (ENSSSCG00000006340) #22	DDR2 (ENSSSCG00000006338) #23	HSD17B7 (ENSSSCG00000006337) #24	ENSSSCG00000041209	CCDC190 (ENSSSCG00000006336) #25	RGS4 (ENSSSCG00000006335) #26	ENSSSCG00000047766	RGS5 (ENSSSCG00000037821) #27	NUF2 (ENSSSCG00000006333) #28	ENSSSCG00000061621 #31	ENSSSCG00000062927 #31	LMX1A (ENSSSCG00000006329)	RXRG (ENSSSCG00000006328)	LRRC52 (ENSSSCG00000029977)	MGST3 (ENSSSCG00000006325)	ENSSSCG00000006324
Chacoan peccary	MODERN SPECIES	774	ENSCWAG00000006086 #10	HSPA6 (ENSCWAG00000006064)	ENSCWAG00000005985 #9	ENSCWAG00000005815 #10	FCRLA (ENSCWAG00000005320) #11	FCRLB (ENSCWAG00000005127) #12	DUSP12 (ENSCWAG00000005091) #13	ENSCWAG00000005034	ATF6 (ENSCWAG00000005011) #14	OLFML2B (ENSCWAG00000004928) #15	NOS1AP (ENSCWAG00000004833) ##17	SPATA46 (ENSCWAG00000004799) #18	C1orf226 (ENSCWAG00000004783) #17	SH2D1B (ENSCWAG00000004757) #19	UHMK1 (ENSCWAG00000004724) #21	UAP1 (ENSCWAG00000004643) #22	DDR2 (ENSCWAG00000004578) #23	HSD17B7 (ENSCWAG00000004543) #24	CCDC190 (ENSCWAG00000004494) #25	RGS4 (ENSCWAG00000004377) #26	RGS5 (ENSCWAG00000004327) #27	NUF2 (ENSCWAG00000004192) #28	PBX1 (ENSCWAG00000004074) #31	LMX1A (ENSCWAG00000004006)	RXRG (ENSCWAG00000003855)	LRRC52 (ENSCWAG00000003811)	MGST3 (ENSCWAG00000012645)	ENSCWAG00000012601	TMCO1 (ENSCWAG00000012548)	UCK2 (ENSCWAG00000012503)	FAM78B (ENSCWAG00000012477)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Camelidae	ANCESTRAL SPECIES	6	ENSGT00390000000566	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.a.a.b #10	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Arabian camel	MODERN SPECIES	13	ENSCDRG00005017769 #10	HSPA6 (ENSCDRG00005017786)	ENSCDRG00005017812 #9	ENSCDRG00005017864 #10	FCRLA (ENSCDRG00005017962) #11	FCRLB (ENSCDRG00005018092) #12	DUSP12 (ENSCDRG00005018202) #13	ATF6 (ENSCDRG00005018223) #14	ENSCDRG00005003470	OLFML2B (ENSCDRG00005003525) #15	ENSCDRG00005003587 #17	SPATA46 (ENSCDRG00005003679) #18	SH2D1B (ENSCDRG00005003706) #19	ENSCDRG00005003756 #20	UHMK1 (ENSCDRG00005003824) #21	UAP1 (ENSCDRG00005003860) #22	DDR2 (ENSCDRG00005003991) #23	HSD17B7 (ENSCDRG00005004054) #24	CCDC190 (ENSCDRG00005004083) #25	RGS4 (ENSCDRG00005004118) #26	RGS5 (ENSCDRG00005004164) #27	NUF2 (ENSCDRG00005004229) #28	ENSCDRG00005004309 #31	ENSCDRG00005004337 #31	LMX1A (ENSCDRG00005004381)	RXRG (ENSCDRG00005004406)	LRRC52 (ENSCDRG00005004441)	MGST3 (ENSCDRG00005004470)	ENSCDRG00005004490	TMCO1 (ENSCDRG00005004596)	UCK2 (ENSCDRG00005004673)
Alpaca	MODERN SPECIES	2738													ENSVPAG00000010724 #17	SH2D1B (ENSVPAG00000010725) #19	UHMK1 (ENSVPAG00000010726) #21	UAP1 (ENSVPAG00000010727) #22
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Cetacea	ANCESTRAL SPECIES		ENSGT00390000001092	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.b #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Odontoceti	ANCESTRAL SPECIES		ENSGT00390000001092	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.b #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000166434	ENSGT00940000163859.a.a	ENSGT00390000003248.a.b.a.b	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687
Odontoceti_a	ANCESTRAL SPECIES		ENSGT01050000244808.A.b.a.a.a.a.b.b #10	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.b.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000163859.a.a	ENSGT00390000003248.a.b.a.b	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659
Dolphin	MODERN SPECIES	2695											NOS1AP (ENSTTRG00000003545) ##17	SPATA46 (ENSTTRG00000003552) #18	ENSTTRG00000003555	SH2D1B (ENSTTRG00000003556) #19	UHMK1 (ENSTTRG00000003560) #21	UAP1 (ENSTTRG00000003563) #22
Odontoceti_b	ANCESTRAL SPECIES		ENSGT01050000244808.A.b.a.a.a.a.b.b #10	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.b.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000163859.a.a	ENSGT00390000003248.a.b.a.b	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309
Monodontidae	ANCESTRAL SPECIES		ENSGT00390000001092	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.b.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000168189	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000163859.a.a	ENSGT00390000003248.a.b.a.b	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309
Beluga whale	MODERN SPECIES	94		HSPA6 (ENSDLEG00000018241)	ENSDLEG00000018227 #9	ENSDLEG00000018215 #10	FCRLA (ENSDLEG00000018201) #11	FCRLB (ENSDLEG00000018186) #12	DUSP12 (ENSDLEG00000018177) #13	ATF6 (ENSDLEG00000018132) #14	OLFML2B (ENSDLEG00000018119) #15	ENSDLEG00000018097 ##17	ENSDLEG00000018090 ##17	SPATA46 (ENSDLEG00000018086) #18	ENSDLEG00000018076	SH2D1B (ENSDLEG00000018055) #19	UHMK1 (ENSDLEG00000018034) #21	UAP1 (ENSDLEG00000017970) #22	ENSDLEG00000017947	DDR2 (ENSDLEG00000017901) #23	HSD17B7 (ENSDLEG00000017870) #24	ENSDLEG00000017861	CCDC190 (ENSDLEG00000017846) #25	RGS4 (ENSDLEG00000017831) #26	RGS5 (ENSDLEG00000017805) #27	NUF2 (ENSDLEG00000017742) #28	ENSDLEG00000017729 #31	PBX1 (ENSDLEG00000017706) #31	ENSDLEG00000017673	LMX1A (ENSDLEG00000017636)	RXRG (ENSDLEG00000017605)	LRRC52 (ENSDLEG00000017593)	MGST3 (ENSDLEG00000017577)
Narwhal	MODERN SPECIES	304	MPZ (ENSMMNG00015005253)	SDHC (ENSMMNG00015005210)	CFAP126 (ENSMMNG00015005181)	ENSMMNG00015005172 #10	FCRLA (ENSMMNG00015005142) #11	FCRLB (ENSMMNG00015005094) #12	DUSP12 (ENSMMNG00015005083) #13	ENSMMNG00015005077	ATF6 (ENSMMNG00015005069) #14	OLFML2B (ENSMMNG00015005056) #15	SPATA46 (ENSMMNG00015005047) #18	ENSMMNG00015005034 #17	ENSMMNG00015005027 #19	ENSMMNG00015005017	UHMK1 (ENSMMNG00015005007) #21	UAP1 (ENSMMNG00015004995) #22	DDR2 (ENSMMNG00015004981) #23	HSD17B7 (ENSMMNG00015004973) #24	CCDC190 (ENSMMNG00015004967) #25	RGS4 (ENSMMNG00015004030) #26	RGS5 (ENSMMNG00015004005) #27	NUF2 (ENSMMNG00015003976) #28	PBX1 (ENSMMNG00015003937) #31	ENSMMNG00015003901	LMX1A (ENSMMNG00015003875)	RXRG (ENSMMNG00015003844)	LRRC52 (ENSMMNG00015003822)	MGST3 (ENSMMNG00015003802)	ENSMMNG00015003777	TMCO1 (ENSMMNG00015003759)	UCK2 (ENSMMNG00015003736)
Vaquita	MODERN SPECIES		ENSPSNG00000011319 #10	HSPA6 (ENSPSNG00000011354)	ENSPSNG00000011383 #9	ENSPSNG00000011627 #10	FCRLA (ENSPSNG00000011924) #11	FCRLB (ENSPSNG00000012272) #12	DUSP12 (ENSPSNG00000012585) #13	ATF6 (ENSPSNG00000012651) #14	ENSPSNG00000012711	OLFML2B (ENSPSNG00000012744) #15	NOS1AP (ENSPSNG00000012834) ##17	C1orf226 (ENSPSNG00000013070) #17	SPATA46 (ENSPSNG00000013155) #18	SH2D1B (ENSPSNG00000013204) #19	UHMK1 (ENSPSNG00000013287) #21	UAP1 (ENSPSNG00000013390) #22	DDR2 (ENSPSNG00000013548) #23	HSD17B7 (ENSPSNG00000013635) #24	CCDC190 (ENSPSNG00000013717) #25	RGS4 (ENSPSNG00000013819) #26	RGS5 (ENSPSNG00000014041) #27	ENSPSNG00000014109	ENSPSNG00000014131	NUF2 (ENSPSNG00000014212) #28	PBX1 (ENSPSNG00000014373) #31	ENSPSNG00000014637	LMX1A (ENSPSNG00000014698)	RXRG (ENSPSNG00000014831)	LRRC52 (ENSPSNG00000015078)	MGST3 (ENSPSNG00000015120)	ENSPSNG00000015151
Sperm whale	MODERN SPECIES	15	ENSPCTG00005000737 #10	HSPA6 (ENSPCTG00005000708)	FCGR3A (ENSPCTG00005000686) #9	ENSPCTG00005000601 #10	FCRLA (ENSPCTG00005000447) #11	FCRLB (ENSPCTG00005000371) #12	DUSP12 (ENSPCTG00005000321) #13	ATF6 (ENSPCTG00005000304) #14	OLFML2B (ENSPCTG00005000276) #15	NOS1AP (ENSPCTG00005000245) ##17	SPATA46 (ENSPCTG00005005206) #18	C1orf226 (ENSPCTG00005005194) #17	SH2D1B (ENSPCTG00005005171) #19	ENSPCTG00005005152	UHMK1 (ENSPCTG00005005114) #21	UHMK1 (ENSPCTG00005005000) #22	HSD17B7 (ENSPCTG00005004854) #23	CCDC190 (ENSPCTG00005004831) #25	RGS4 (ENSPCTG00005004790) #26	RGS5 (ENSPCTG00005004758) #27	NUF2 (ENSPCTG00005004722) #28	PBX1 (ENSPCTG00005004638) #31	ENSPCTG00005004612	ENSPCTG00005004602	LMX1A (ENSPCTG00005004564)	RXRG (ENSPCTG00005004523)	LRRC52 (ENSPCTG00005004505)	MGST3 (ENSPCTG00005004485)	TMCO1 (ENSPCTG00005004388)	ENSPCTG00005004343	FMO3 (ENSPCTG00005004320)
Blue whale	MODERN SPECIES		HSPA6 (ENSBMSG00010006809)	ENSBMSG00010006826 #9	ENSBMSG00010006867 #10	FCRLA (ENSBMSG00010006982) #11	FCRLB (ENSBMSG00010007153) #12	DUSP12 (ENSBMSG00010007258) #13	ATF6 (ENSBMSG00010007267) #14	ENSBMSG00010007277	OLFML2B (ENSBMSG00010007294) #15	NOS1AP (ENSBMSG00010007318) ##17	SPATA46 (ENSBMSG00010007350) #18	ENSBMSG00010007363	ENSBMSG00010007382	ENSBMSG00010007405 #20	UHMK1 (ENSBMSG00010007422) #21	UAP1 (ENSBMSG00010007451) #22	DDR2 (ENSBMSG00010007502) #23	HSD17B7 (ENSBMSG00010007520) #24	CCDC190 (ENSBMSG00010007562) #25	RGS4 (ENSBMSG00010007582) #26	RGS5 (ENSBMSG00010007671) #27	NUF2 (ENSBMSG00010007687) #28	PBX1 (ENSBMSG00010007714) #31	LMX1A (ENSBMSG00010007743)	RXRG (ENSBMSG00010007753)	LRRC52 (ENSBMSG00010007774)	MGST3 (ENSBMSG00010007783)	ENSBMSG00010007800	TMCO1 (ENSBMSG00010007811)	UCK2 (ENSBMSG00010007821)	FAM78B (ENSBMSG00010007827)
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000168561	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000168561	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000168561.a	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d
Bovinae	ANCESTRAL SPECIES	1	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.a.a.b #10	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000168561.a	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659
Bos	ANCESTRAL SPECIES		ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.a.a.b #10	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000168561.a	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d
Bos_b	ANCESTRAL SPECIES	1	ENSGT01050000244808.A.b.a.a.a.a.a.b #10	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041.u #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000155477.n	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT01100000263480.a.b.b.a.b.b.b.a.b.b.a	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000168561.a	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659
Cow	MODERN SPECIES	22	FCGR2A (ENSBTAG00000038124) #10	HSPA6 (ENSBTAG00000039035)	FCGR3A (ENSBTAG00000002096) #9	FCGR2B (ENSBTAG00000021842) #10	FCRLA (ENSBTAG00000034159) #11	FCRLB (ENSBTAG00000014580) #12	DUSP12 (ENSBTAG00000021754) #13	ATF6 (ENSBTAG00000005227) #14	OLFML2B (ENSBTAG00000034147) #15	NOS1AP (ENSBTAG00000010158) ##17	SPATA46 (ENSBTAG00000010174) #18	C3H1orf226 (ENSBTAG00000050790)	SH2D1B (ENSBTAG00000054194) #19	UHMK1 (ENSBTAG00000012694) #21	ENSBTAG00000001608	UAP1 (ENSBTAG00000010206) #22	DDR2 (ENSBTAG00000004885) #23	ENSBTAG00000050123	HSD17B7 (ENSBTAG00000005976) #24	CCDC190 (ENSBTAG00000027425) #25	RGS4 (ENSBTAG00000046277) #26	RGS5 (ENSBTAG00000016341) #27	NUF2 (ENSBTAG00000007247) #28	ENSBTAG00000054045	ENSBTAG00000054238 #31	ENSBTAG00000053215 #31	PBX1 (ENSBTAG00000013801) #31	LMX1A (ENSBTAG00000012025)	RXRG (ENSBTAG00000016801)	LRRC52 (ENSBTAG00000001686)	MGST3 (ENSBTAG00000010265)
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005019944	CFAP126 (ENSBIXG00005003269)	HSPA6 (ENSBIXG00005020005)	ENSBIXG00005007297 #9	ENSBIXG00005020073 #10	FCRLA (ENSBIXG00005020152) #11	FCRLB (ENSBIXG00005003351) #12	ENSBIXG00005020239 #13	ATF6 (ENSBIXG00005020298) #14	OLFML2B (ENSBIXG00005020387) #15	SPATA46 (ENSBIXG00005005741) #18	ENSBIXG00005020503 #17	SH2D1B (ENSBIXG00005020558) #19	UHMK1 (ENSBIXG00005020593) #21	ENSBIXG00005020615	UAP1 (ENSBIXG00005020724) #22	DDR2 (ENSBIXG00005020871) #23	ENSBIXG00005003536	HSD17B7 (ENSBIXG00005020979) #24	ENSBIXG00005003542	CCDC190 (ENSBIXG00005021019) #25	RGS4 (ENSBIXG00005006600) #26	ENSBIXG00005007356	ENSBIXG00005003576	RGS5 (ENSBIXG00005021199) #27	NUF2 (ENSBIXG00005021236) #28	ENSBIXG00005021294	ENSBIXG00005005540	PBX1 (ENSBIXG00005003636) #31	LMX1A (ENSBIXG00005021672)	RXRG (ENSBIXG00005007217)
Bos_a	ANCESTRAL SPECIES	27	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.a.a.b #10	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000168561.a
Domestic yak	MODERN SPECIES	22	ENSBGRG00000001772 #10	ENSBGRG00000001856 #10	HSPA6 (ENSBGRG00000001867)	ENSBGRG00000001884 #9	ENSBGRG00000001907	ENSBGRG00000001917	FCRLA (ENSBGRG00000001948) #11	FCRLB (ENSBGRG00000001988) #12	DUSP12 (ENSBGRG00000002021) #13	ATF6 (ENSBGRG00000002089) #14	OLFML2B (ENSBGRG00000002127) #15	ENSBGRG00000002194 #17	SPATA46 (ENSBGRG00000002329) #18	SH2D1B (ENSBGRG00000002346) #19	UHMK1 (ENSBGRG00000002383) #21	UAP1 (ENSBGRG00000002484) #22	DDR2 (ENSBGRG00000002518) #23	HSD17B7 (ENSBGRG00000002609) #24	CCDC190 (ENSBGRG00000002667) #25	RGS4 (ENSBGRG00000002689) #26	RGS5 (ENSBGRG00000002762) #27	NUF2 (ENSBGRG00000002820) #28	ENSBGRG00000002836	ENSBGRG00000002853	ENSBGRG00000002867	ENSBGRG00000002877	ENSBGRG00000002888	ENSBGRG00000002902	ENSBGRG00000002909	ENSBGRG00000002921	ENSBGRG00000002940
Wild yak	MODERN SPECIES	324												ENSBMUG00000012276	SPATA46 (ENSBMUG00000012294) #18	SH2D1B (ENSBMUG00000012310) #19	UHMK1 (ENSBMUG00000012337) #21	UAP1 (ENSBMUG00000012369) #22	DDR2 (ENSBMUG00000012414) #23	HSD17B7 (ENSBMUG00000012442) #24	CCDC190 (ENSBMUG00000012459) #25
American bison	MODERN SPECIES	3260	ENSBBBG00000022469 #10	HSPA6 (ENSBBBG00000022472)	ENSBBBG00000022487 #9	ENSBBBG00000022492	ENSBBBG00000005949 #10	FCRLA (ENSBBBG00000022597) #11	FCRLB (ENSBBBG00000005965) #12	DUSP12 (ENSBBBG00000005969) #13	ATF6 (ENSBBBG00000022711) #14	OLFML2B (ENSBBBG00000022749) #15	NOS1AP (ENSBBBG00000022767) ##17	SPATA46 (ENSBBBG00000005991) #18	ENSBBBG00000022783	SH2D1B (ENSBBBG00000022793) #19	UHMK1 (ENSBBBG00000022822) #21	UAP1 (ENSBBBG00000022895) #22	DDR2 (ENSBBBG00000022964) #23	HSD17B7 (ENSBBBG00000022986) #24	CCDC190 (ENSBBBG00000023000) #25	RGS4 (ENSBBBG00000023059) #26	ENSBBBG00000023069	RGS5 (ENSBBBG00000008963) #27	NUF2 (ENSBBBG00000023163) #28	ENSBBBG00000006070	ENSBBBG00000000499
Caprinae	ANCESTRAL SPECIES	49		ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041.w #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.t #17	ENSGT00390000007598 #18	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Goat	MODERN SPECIES	22	ENSCHIG00000008238 #9	ENSCHIG00000012745	FCRLA (ENSCHIG00000025948) #11	FCRLB (ENSCHIG00000020733) #12	ENSCHIG00000014070	ENSCHIG00000026959 #13	ATF6 (ENSCHIG00000018456) #14	ENSCHIG00000019670	ENSCHIG00000022740	OLFML2B (ENSCHIG00000027176) #15	ENSCHIG00000014253 #17	SPATA46 (ENSCHIG00000022724) #18	SH2D1B (ENSCHIG00000012228) #19	ENSCHIG00000018779	UHMK1 (ENSCHIG00000019078) #21	UAP1 (ENSCHIG00000015675) #22	DDR2 (ENSCHIG00000022077) #23	HSD17B7 (ENSCHIG00000006708) #24	CCDC190 (ENSCHIG00000016871) #25	RGS4 (ENSCHIG00000025217) #26	RGS5 (ENSCHIG00000022623) #27	NUF2 (ENSCHIG00000021734) #28	ENSCHIG00000010502	ENSCHIG00000027006	ENSCHIG00000000654	ENSCHIG00000024885 #31	ENSCHIG00000019761 #31	LMX1A (ENSCHIG00000022333)	RXRG (ENSCHIG00000026695)	LRRC52 (ENSCHIG00000022157)	ENSCHIG00000010668
Rambouillet Sheep	MODERN SPECIES		ENSOARG00020000600	ENSOARG00020000623 #10	HSPA6 (ENSOARG00020000639)	FCGR3A (ENSOARG00020000656) #9	FCGR2B (ENSOARG00020000691) #10	FCRLA (ENSOARG00020000735) #11	FCRLB (ENSOARG00020000888) #12	DUSP12 (ENSOARG00020000938) #13	ATF6 (ENSOARG00020000954) #14	ENSOARG00020000982	OLFML2B (ENSOARG00020001009) #15	ENSOARG00020001104 #17	SPATA46 (ENSOARG00020001153) #18	SH2D1B (ENSOARG00020001174) #19	UHMK1 (ENSOARG00020001187) #21	UAP1 (ENSOARG00020001261) #22	DDR2 (ENSOARG00020001363) #23	HSD17B7 (ENSOARG00020001382) #24	CCDC190 (ENSOARG00020001404) #25	RGS4 (ENSOARG00020001430) #26	ENSOARG00020001471	RGS5 (ENSOARG00020001477) #27	NUF2 (ENSOARG00020001492) #28	ENSOARG00020001519	PBX1 (ENSOARG00020001579) #31	LMX1A (ENSOARG00020001833)	RXRG (ENSOARG00020001851)	ENSOARG00020001878	LRRC52 (ENSOARG00020001888)	MGST3 (ENSOARG00020001904)	ENSOARG00020001921
Siberian musk deer	MODERN SPECIES	167		ENSMMSG00000001355 #10	ENSMMSG00000001323 #9	ENSMMSG00000001289 #10	FCRLA (ENSMMSG00000001056) #11	FCRLB (ENSMMSG00000000915) #12	ENSMMSG00000000884	ENSMMSG00000000856 #13	ENSMMSG00000000834	ATF6 (ENSMMSG00000000815) #14	OLFML2B (ENSMMSG00000000781) #15	SPATA46 (ENSMMSG00000000755) #18	ENSMMSG00000000662 #17	SH2D1B (ENSMMSG00000000630) #19	UHMK1 (ENSMMSG00000000594) #21	UAP1 (ENSMMSG00000000525) #22	DDR2 (ENSMMSG00000000474) #23	HSD17B7 (ENSMMSG00000000442) #24	CCDC190 (ENSMMSG00000000408) #25	RGS4 (ENSMMSG00000000380) #26	RGS5 (ENSMMSG00000000360) #27	ENSMMSG00000000335	NUF2 (ENSMMSG00000000308) #28	ENSMMSG00000000290	ENSMMSG00000000280	ENSMMSG00000000264	ENSMMSG00000000243	ENSMMSG00000000231
Yarkand deer	MODERN SPECIES	12	PCP4L1 (ENSCHYG00000007208)	MPZ (ENSCHYG00000007172)	ENSCHYG00000007089	CFAP126 (ENSCHYG00000007019)	ENSCHYG00000006963 #9	ENSCHYG00000006773 #10	FCRLA (ENSCHYG00000006347) #11	FCRLB (ENSCHYG00000006184) #12	DUSP12 (ENSCHYG00000006142) #13	ENSCHYG00000006110	ATF6 (ENSCHYG00000005942) #14	OLFML2B (ENSCHYG00000005776) #15	SPATA46 (ENSCHYG00000005698) #18	NOS1AP (ENSCHYG00000005636) ##17	SH2D1B (ENSCHYG00000005606) #19	UAP1 (ENSCHYG00000005397) #22	DDR2 (ENSCHYG00000005237) #23	ENSCHYG00000005162 #24	CCDC190 (ENSCHYG00000005115) #25	RGS4 (ENSCHYG00000005067) #26	RGS5 (ENSCHYG00000005022) #27	NUF2 (ENSCHYG00000004983) #28	ENSCHYG00000004964	PBX1 (ENSCHYG00000004877) #31	LMX1A (ENSCHYG00000004832)	RXRG (ENSCHYG00000004811)	ENSCHYG00000012897	LRRC52 (ENSCHYG00000012879)	MGST3 (ENSCHYG00000012749)	ALDH9A1 (ENSCHYG00000012639)	TMCO1 (ENSCHYG00000012575)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000163762.a.a	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659
Carnivora	ANCESTRAL SPECIES	14	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000163762.a.a	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659
Caniformia	ANCESTRAL SPECIES	10	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000163762.a.a	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659
Canidae	ANCESTRAL SPECIES	36	ENSGT00390000000566	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Canis_lupus	ANCESTRAL SPECIES	33	ENSGT00390000000566	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00900000143287	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659.m	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Dog	MODERN SPECIES	31	ENSCAFG00845028843	ENSCAFG00845028772 #9	ENSCAFG00845028724	ENSCAFG00845028677 #10	FCRLA (ENSCAFG00845028307) #11	FCRLB (ENSCAFG00845028077) #12	ENSCAFG00845027945	DUSP12 (ENSCAFG00845027806) #13	ATF6 (ENSCAFG00845027663) #14	OLFML2B (ENSCAFG00845027557) #15	SPATA46 (ENSCAFG00845027511) #18	ENSCAFG00845027342 #17	SH2D1B (ENSCAFG00845027206) #19	ENSCAFG00845027160	UHMK1 (ENSCAFG00845027027) #21	UAP1 (ENSCAFG00845026767) #22	DDR2 (ENSCAFG00845026475) #23	HSD17B7 (ENSCAFG00845026233) #24	CCDC190 (ENSCAFG00845026143) #25	RGS4 (ENSCAFG00845026010) #26	RGS5 (ENSCAFG00845025929) #27	NUF2 (ENSCAFG00845025722) #28	PBX1 (ENSCAFG00845025355) #31	LMX1A (ENSCAFG00845025098)	RXRG (ENSCAFG00845024833)	LRRC52 (ENSCAFG00845024741)	MGST3 (ENSCAFG00845024662)	ENSCAFG00845024594	ENSCAFG00845024557	TMCO1 (ENSCAFG00845024491)	UCK2 (ENSCAFG00845024343)
Dingo	MODERN SPECIES	275	SDHC (ENSCAFG00020001059)	CFAP126 (ENSCAFG00020001068)	ENSCAFG00020001072 #9	ENSCAFG00020001079	ENSCAFG00020001085 #10	FCRLA (ENSCAFG00020001094) #11	FCRLB (ENSCAFG00020001110) #12	ENSCAFG00020001115	DUSP12 (ENSCAFG00020001123) #13	ATF6 (ENSCAFG00020001288) #14	OLFML2B (ENSCAFG00020001593) #15	ENSCAFG00020001616 #17	SPATA46 (ENSCAFG00020001639) #18	SH2D1B (ENSCAFG00020001642) #19	UHMK1 (ENSCAFG00020001672) #21	UAP1 (ENSCAFG00020001687) #22	DDR2 (ENSCAFG00020001692) #23	HSD17B7 (ENSCAFG00020001727) #24	ENSCAFG00020001732 #25	RGS4 (ENSCAFG00020001738) #26	RGS5 (ENSCAFG00020001746) #27	NUF2 (ENSCAFG00020001764) #28	ENSCAFG00020001925 #31	ENSCAFG00020001928	ENSCAFG00020001933 #31	LMX1A (ENSCAFG00020001942)	RXRG (ENSCAFG00020001975)	LRRC52 (ENSCAFG00020001986)	ENSCAFG00020001992	ENSCAFG00020002030	ENSCAFG00020002036
Red fox	MODERN SPECIES	8				ENSVVUG00000009810 #9	ENSVVUG00000009812	FCGR2B (ENSVVUG00000009816) #10	FCRLA (ENSVVUG00000009820) #11	FCRLB (ENSVVUG00000009827) #12	DUSP12 (ENSVVUG00000009840) #13	ATF6 (ENSVVUG00000009915) #14	OLFML2B (ENSVVUG00000009927) #15	ENSVVUG00000009957 #17	SPATA46 (ENSVVUG00000009973) #18	ENSVVUG00000009977	UHMK1 (ENSVVUG00000009990) #21	UAP1 (ENSVVUG00000010001) #22	DDR2 (ENSVVUG00000010010) #23	HSD17B7 (ENSVVUG00000010017) #24	CCDC190 (ENSVVUG00000010024) #25	RGS4 (ENSVVUG00000010037) #26	RGS5 (ENSVVUG00000010040) #27	NUF2 (ENSVVUG00000010059) #28	PBX1 (ENSVVUG00000010091) #31	LMX1A (ENSVVUG00000010113)	RXRG (ENSVVUG00000010121)	LRRC52 (ENSVVUG00000010146)	MGST3 (ENSVVUG00000010150)	ENSVVUG00000010155	ENSVVUG00000010169	UCK2 (ENSVVUG00000010176)	FAM78B (ENSVVUG00000010186)
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT01030000234556.a.b.b	ENSGT00390000000566.k.a	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000163762.a.a	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659
Ursidae	ANCESTRAL SPECIES	4	ENSGT00530000064299.b	ENSGT01030000234556.a.b.b	ENSGT00390000000566.k.a	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221.b #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000163762.a.a	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659
Ursus	ANCESTRAL SPECIES	92					ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221.b #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000163762.a.a	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d
American black bear	MODERN SPECIES	5647																UAP1 (ENSUAMG00000026421) #22
Polar bear	MODERN SPECIES	126			ENSUMAG00000022893 #9	ENSUMAG00000022887 #10	FCRLA (ENSUMAG00000022884) #11	ENSUMAG00000022877 #12	DUSP12 (ENSUMAG00000022871) #13	ENSUMAG00000022860	ATF6 (ENSUMAG00000022800) #14	OLFML2B (ENSUMAG00000022785) #15	ENSUMAG00000022780 ##17	SPATA46 (ENSUMAG00000022779) #18	C1orf226 (ENSUMAG00000022778) #17	ENSUMAG00000022777	UHMK1 (ENSUMAG00000022774) #21	UAP1 (ENSUMAG00000022772) #22	DDR2 (ENSUMAG00000022767) #23	HSD17B7 (ENSUMAG00000022765) #24	CCDC190 (ENSUMAG00000022761) #25	RGS4 (ENSUMAG00000022755) #26	RGS5 (ENSUMAG00000022753) #27	NUF2 (ENSUMAG00000022747) #28	ENSUMAG00000022741	PBX1 (ENSUMAG00000022725) #31	LMX1A (ENSUMAG00000022720)	RXRG (ENSUMAG00000022718)	LRRC52 (ENSUMAG00000022717)	MGST3 (ENSUMAG00000022716)	ENSUMAG00000022715	ENSUMAG00000022713	TMCO1 (ENSUMAG00000022711)
Giant Panda	MODERN SPECIES	18	CFAP126 (ENSAMEG00000015344)	SDHC (ENSAMEG00000015351)	ENSAMEG00000001705 #9	ENSAMEG00000001682 #10	FCRLA (ENSAMEG00000028609) #11	FCRLB (ENSAMEG00000001677) #12	DUSP12 (ENSAMEG00000001663) #13	ENSAMEG00000001657	ATF6 (ENSAMEG00000001631) #14	OLFML2B (ENSAMEG00000001604) #15	NOS1AP (ENSAMEG00000001593) ##17	SPATA46 (ENSAMEG00000001601) #18	C1orf226 (ENSAMEG00000026164) #17	ENSAMEG00000001590	UHMK1 (ENSAMEG00000001572) #21	UAP1 (ENSAMEG00000001534) #22	DDR2 (ENSAMEG00000001491) #23	HSD17B7 (ENSAMEG00000001450) #24	ENSAMEG00000001441 #25	RGS4 (ENSAMEG00000026331) #26	RGS5 (ENSAMEG00000024725) #27	NUF2 (ENSAMEG00000006525) #28	PBX1 (ENSAMEG00000006543) #31	LMX1A (ENSAMEG00000006574)	RXRG (ENSAMEG00000006616)	LRRC52 (ENSAMEG00000006655)	MGST3 (ENSAMEG00000006658)	ALDH9A1 (ENSAMEG00000006688)	TMCO1 (ENSAMEG00000006712)	ENSAMEG00000030407	ENSAMEG00000028227
Mustelinae	ANCESTRAL SPECIES	89				ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d
Ferret	MODERN SPECIES	191			ENSMPUG00000003452 #9	ENSMPUG00000003458 #10	FCRLA (ENSMPUG00000003467) #11	FCRLB (ENSMPUG00000003470) #12	DUSP12 (ENSMPUG00000003487) #13	ATF6 (ENSMPUG00000003493) #14	ENSMPUG00000003511	ENSMPUG00000003518	OLFML2B (ENSMPUG00000003524) #15	NOS1AP (ENSMPUG00000003532) ##17	SPATA46 (ENSMPUG00000003588) #18	ENSMPUG00000003605	UHMK1 (ENSMPUG00000003619) #21	UAP1 (ENSMPUG00000003675) #22	DDR2 (ENSMPUG00000003733) #23	HSD17B7 (ENSMPUG00000003741) #24	CCDC190 (ENSMPUG00000003748) #25	RGS4 (ENSMPUG00000003752) #26	RGS5 (ENSMPUG00000003758) #27	NUF2 (ENSMPUG00000003765) #28	PBX1 (ENSMPUG00000003773) #31	LMX1A (ENSMPUG00000003787)	RXRG (ENSMPUG00000003794)	LRRC52 (ENSMPUG00000003807)	MGST3 (ENSMPUG00000003817)	ALDH9A1 (ENSMPUG00000003853)	TMCO1 (ENSMPUG00000003860)	UCK2 (ENSMPUG00000003871)	FAM78B (ENSMPUG00000003879)
American mink	MODERN SPECIES	457				ENSNVIG00000024193 #9	ENSNVIG00000024196 #10	FCRLA (ENSNVIG00000024199) #11	FCRLB (ENSNVIG00000024209) #12	DUSP12 (ENSNVIG00000024213) #13	ATF6 (ENSNVIG00000024214) #14	ENSNVIG00000024221 #15	NOS1AP (ENSNVIG00000024223) ##17	C1orf226 (ENSNVIG00000024227) #17	SPATA46 (ENSNVIG00000024230) #18	SH2D1B (ENSNVIG00000024231) #19	UHMK1 (ENSNVIG00000024232) #21	UAP1 (ENSNVIG00000024233) #22
Felidae	ANCESTRAL SPECIES	11	ENSGT00390000000566	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000164616	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Panthera	ANCESTRAL SPECIES	32	ENSGT00390000000566	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000164616	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Tiger	MODERN SPECIES	402	MPZ (ENSPTIG00000011090)	SDHC (ENSPTIG00000011614)	CFAP126 (ENSPTIG00000014425)	ENSPTIG00000015473 #9	ENSPTIG00000015839 #10	FCRLA (ENSPTIG00000017978) #11	FCRLB (ENSPTIG00000020454) #12	DUSP12 (ENSPTIG00000001552) #13	ATF6 (ENSPTIG00000003848) #14	ENSPTIG00000006558 #15	ENSPTIG00000007556 ##17	SPATA46 (ENSPTIG00000008323) #18	ENSPTIG00000009765	SH2D1B (ENSPTIG00000010271) #19	UHMK1 (ENSPTIG00000010715) #21	UAP1 (ENSPTIG00000011240) #22	DDR2 (ENSPTIG00000013569) #23	HSD17B7 (ENSPTIG00000014443) #24	ENSPTIG00000015375 #25
Panthera_a	ANCESTRAL SPECIES	47			ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000164616	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
lion	MODERN SPECIES	17	ENSPLOG00000014137	ENSPLOG00000014448	ENSPLOG00000014507 #9	ENSPLOG00000014687 #10	FCRLA (ENSPLOG00000014834) #11	FCRLB (ENSPLOG00000015477) #12	DUSP12 (ENSPLOG00000015731) #13	ATF6 (ENSPLOG00000015807) #14	ENSPLOG00000015980	ENSPLOG00000016021 #15	NOS1AP (ENSPLOG00000016056) ##17	SPATA46 (ENSPLOG00000016240) #18	C1orf226 (ENSPLOG00000016270) #17	ENSPLOG00000016340	UHMK1 (ENSPLOG00000016372) #21	UAP1 (ENSPLOG00000016423) #22	DDR2 (ENSPLOG00000016515) #23	HSD17B7 (ENSPLOG00000016646) #24	CCDC190 (ENSPLOG00000016762) #25	RGS4 (ENSPLOG00000016993) #26	RGS5 (ENSPLOG00000017161) #27	NUF2 (ENSPLOG00000017266) #28	PBX1 (ENSPLOG00000017397) #31	LMX1A (ENSPLOG00000017709)	RXRG (ENSPLOG00000017780)	LRRC52 (ENSPLOG00000017902)	MGST3 (ENSPLOG00000017934)	ALDH9A1 (ENSPLOG00000017965)	TMCO1 (ENSPLOG00000017999)	UCK2 (ENSPLOG00000018029)	FAM78B (ENSPLOG00000018075)
leopard	MODERN SPECIES	47			ENSPPRG00000009131 #9	ENSPPRG00000010141 #10	FCRLA (ENSPPRG00000013769) #11	FCRLB (ENSPPRG00000017542) #12	DUSP12 (ENSPPRG00000018306) #13	ENSPPRG00000022356	ATF6 (ENSPPRG00000000895) #14	OLFML2B (ENSPPRG00000001221) #15	NOS1AP (ENSPPRG00000001487) ##17	SPATA46 (ENSPPRG00000001803) #18	ENSPPRG00000002500	SH2D1B (ENSPPRG00000002606) #19	UHMK1 (ENSPPRG00000002673) #21	UAP1 (ENSPPRG00000003872) #22	DDR2 (ENSPPRG00000004150) #23	HSD17B7 (ENSPPRG00000004521) #24	ENSPPRG00000005591 #25	RGS4 (ENSPPRG00000006395) #26	RGS5 (ENSPPRG00000006588) #27	NUF2 (ENSPPRG00000006964) #28	ENSPPRG00000007028 #31	ENSPPRG00000007509 #31	LMX1A (ENSPPRG00000007877)	RXRG (ENSPPRG00000007988)	LRRC52 (ENSPPRG00000007995)	MGST3 (ENSPPRG00000008055)	ENSPPRG00000008229	ENSPPRG00000009622	TMCO1 (ENSPPRG00000009653)
Cat	MODERN SPECIES	248	CFAP126 (ENSFCAG00000015770)	FCGR3A (ENSFCAG00000001034) #9	ENSFCAG00000029572	FCGR2B (ENSFCAG00000008160) #10	FCRLA (ENSFCAG00000008164) #11	FCRLB (ENSFCAG00000029830) #12	DUSP12 (ENSFCAG00000008168) #13	ENSFCAG00000034894	ATF6 (ENSFCAG00000045138) #14	ENSFCAG00000050768 #15	OLFML2B (ENSFCAG00000014119) #15	SPATA46 (ENSFCAG00000011128) #18	NOS1AP (ENSFCAG00000014120) ##17	ENSFCAG00000046216	UHMK1 (ENSFCAG00000014123) #21	UAP1 (ENSFCAG00000014124) #22	DDR2 (ENSFCAG00000009163) #23	ENSFCAG00000049643	HSD17B7 (ENSFCAG00000025287) #24	CCDC190 (ENSFCAG00000009378) #25	RGS4 (ENSFCAG00000031433) #26	RGS5 (ENSFCAG00000045953) #27	NUF2 (ENSFCAG00000005528) #28	PBX1 (ENSFCAG00000005533) #31	LMX1A (ENSFCAG00000010758)	RXRG (ENSFCAG00000010759)	LRRC52 (ENSFCAG00000040033)	ALDH9A1 (ENSFCAG00000004312)	TMCO1 (ENSFCAG00000029341)	MGST3 (ENSFCAG00000004311)	UCK2 (ENSFCAG00000024006)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00390000001092	ENSGT00940000163722	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.t #17	ENSGT00390000007598 #18	ENSGT00940000164616	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Chiroptera	ANCESTRAL SPECIES	22	ENSGT00390000000566	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.t #17	ENSGT00390000007598 #18	ENSGT00940000164616	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d
Microchiroptera	ANCESTRAL SPECIES	22	ENSGT01030000234556.a.b.b	ENSGT00390000000566	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00860000135883	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.t #17	ENSGT00390000007598 #18	ENSGT00940000163577 #19	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Greater horseshoe bat	MODERN SPECIES	14	ENSRFEG00010013364	SDHC (ENSRFEG00010013456)	CFAP126 (ENSRFEG00010013623)	ENSRFEG00010013828 #10	ENSRFEG00010014037 #9	FCRLA (ENSRFEG00010014164) #11	FCRLB (ENSRFEG00010014832) #12	ENSRFEG00010015098	DUSP12 (ENSRFEG00010015152) #13	ATF6 (ENSRFEG00010015185) #14	OLFML2B (ENSRFEG00010015425) #15	ENSRFEG00010015498 #17	SPATA46 (ENSRFEG00010015656) #18	SH2D1B (ENSRFEG00010015711) #19	UHMK1 (ENSRFEG00010015801) #21	UAP1 (ENSRFEG00010015890) #22	DDR2 (ENSRFEG00010016034) #23	HSD17B7 (ENSRFEG00010016070) #24	ENSRFEG00010016138 #25	RGS4 (ENSRFEG00010016213) #26	RGS5 (ENSRFEG00010016319) #27	NUF2 (ENSRFEG00010016436) #28	PBX1 (ENSRFEG00010016558) #31	LMX1A (ENSRFEG00010016928)	RXRG (ENSRFEG00010016975)	LRRC52 (ENSRFEG00010017050)	ENSRFEG00010017103	ENSRFEG00010017132	TMCO1 (ENSRFEG00010017188)	UCK2 (ENSRFEG00010017265)	FAM78B (ENSRFEG00010017400)
Microbat	MODERN SPECIES	1441													SPATA46 (ENSMLUG00000024403) #18	ENSMLUG00000005662 #17	UHMK1 (ENSMLUG00000002872) #21	UAP1 (ENSMLUG00000015520) #22	DDR2 (ENSMLUG00000005319) #23	HSD17B7 (ENSMLUG00000012048) #24	ENSMLUG00000024294 #25	ENSMLUG00000001868 ##20	RGS4 (ENSMLUG00000001720) #26	RGS5 (ENSMLUG00000015842) #27	NUF2 (ENSMLUG00000024147) #28
Megabat	MODERN SPECIES	125																UAP1 (ENSPVAG00000014272) #22
Equus	ANCESTRAL SPECIES	75													ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000161784.f.b.a	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d
Donkey	MODERN SPECIES	17	PLXNA2 (ENSEASG00005002643)	ENSEASG00005002639	ENSEASG00005002625	ENSEASG00005002616	ENSEASG00005002594	ENSEASG00005002577	ENSEASG00005027150	ENSEASG00005002552	ENSEASG00005002525	ENSEASG00005033415	ENSEASG00005026703 #18	ENSEASG00005022816 #17	ENSEASG00005035156 #20	ENSEASG00005033453	UHMK1 (ENSEASG00005022829) #21	UAP1 (ENSEASG00005022831) #22	DDR2 (ENSEASG00005022832) #23	ENSEASG00005030766 #24	ENSEASG00005038581	ENSEASG00005031513	ENSEASG00005027136	CCDC190 (ENSEASG00005010387) #25	RGS4 (ENSEASG00005031920) #26	RGS5 (ENSEASG00005024804) #27	NUF2 (ENSEASG00005010407) #28	ENSEASG00005010465 #31	ENSEASG00005010469 #31	LMX1A (ENSEASG00005010473)	RXRG (ENSEASG00005010475)	LRRC52 (ENSEASG00005010476)	ENSEASG00005031954
Horse	MODERN SPECIES	26	NIT1 (ENSECAG00000000449)	KLHDC9 (ENSECAG00000019935)	DEDD (ENSECAG00000011248)	ARHGAP30 (ENSECAG00000011890)	USF1 (ENSECAG00000004755)	TSTD1 (ENSECAG00000000506)	NECTIN4 (ENSECAG00000016260)	F11R (ENSECAG00000018579)	ENSECAG00000045874	ENSECAG00000054489 #17	SPATA46 (ENSECAG00000016451) #18	ENSECAG00000016098 #17	ENSECAG00000015500 #20	ENSECAG00000031558	UHMK1 (ENSECAG00000008744) #21	UAP1 (ENSECAG00000054520) #22	DDR2 (ENSECAG00000010726) #23	HSD17B7 (ENSECAG00000024992) #24	ENSECAG00000019733	ENSECAG00000036612	ENSECAG00000050571	ENSECAG00000048731	CCDC190 (ENSECAG00000024873) #25	RGS4 (ENSECAG00000018261) #26	RGS5 (ENSECAG00000023668) #27	NUF2 (ENSECAG00000009163) #28	PBX1 (ENSECAG00000013058) #31	LMX1A (ENSECAG00000009132)	RXRG (ENSECAG00000024377)	LRRC52 (ENSECAG00000023465)	MGST3 (ENSECAG00000022320)
Atlantogenata	ANCESTRAL SPECIES	15	ENSGT00530000064299	ENSGT01030000234556.a.b.b	ENSGT00390000000566	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608.t.b	ENSGT00390000008608.t.a	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d
Xenarthra	ANCESTRAL SPECIES	422						ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000173026	ENSGT00940000157757 #15	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22
Sloth	MODERN SPECIES	1606																UAP1 (ENSCHOG00000008528) #22
Armadillo	MODERN SPECIES	4033	HSPA6 (ENSDNOG00000036658)	ENSDNOG00000037134	ENSDNOG00000031629 #9	ENSDNOG00000008202 #10	ENSDNOG00000034806	FCRLB (ENSDNOG00000035548) #12	DUSP12 (ENSDNOG00000008214) #13	ATF6 (ENSDNOG00000008226) #14	ENSDNOG00000044417	OLFML2B (ENSDNOG00000008474) #15	ENSDNOG00000016598 #17	SPATA46 (ENSDNOG00000041735) #18	ENSDNOG00000042740 #17	ENSDNOG00000042696	UHMK1 (ENSDNOG00000009922) #21	UAP1 (ENSDNOG00000024661) #22
Afrotheria	ANCESTRAL SPECIES	79	ENSGT00530000064299	ENSGT01030000234556.a.b.b	ENSGT00390000000566	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340.k #24	ENSGT00390000013340.l #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608.t.b	ENSGT00940000163309	ENSGT00390000008608.s	ENSGT00940000162687
Afrotheria_a	ANCESTRAL SPECIES	83	ENSGT00940000160641	ENSGT01030000234556.a.b.b	ENSGT00390000000566	ENSGT00390000001092	ENSGT01050000244808.A.b.a.a.a.b #9	ENSGT01050000244808.A.b.a.a.a.a #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.u ##17	ENSGT00390000007598 #18	ENSGT00510000046975.b.t #17	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340.k #24	ENSGT00390000013340.l #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608.t.b	ENSGT00940000162687	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d
Hyrax	MODERN SPECIES	3867															UHMK1 (ENSPCAG00000000531) #21	UAP1 (ENSPCAG00000000566) #22
Elephant	MODERN SPECIES	325	NR1I3 (ENSLAFG00000001180)	MPZ (ENSLAFG00000022849)	SDHC (ENSLAFG00000008270)	CFAP126 (ENSLAFG00000022931)	FCRLB (ENSLAFG00000006361) #12	ENSLAFG00000012556 #9	ENSLAFG00000000951 #10	FCRLA (ENSLAFG00000008694) #11	DUSP12 (ENSLAFG00000005550) #13	ATF6 (ENSLAFG00000003622) #14	OLFML2B (ENSLAFG00000008905) #15	NOS1AP (ENSLAFG00000018458) ##17	SPATA46 (ENSLAFG00000018463) #18	C1orf226 (ENSLAFG00000029908) #17	UHMK1 (ENSLAFG00000007405) #21	UAP1 (ENSLAFG00000007411) #22	DDR2 (ENSLAFG00000001822) #23	ENSLAFG00000029339 #24	ENSLAFG00000001825 #24	CCDC190 (ENSLAFG00000012498) #25	RGS4 (ENSLAFG00000009641) #26	RGS5 (ENSLAFG00000000531) #27	NUF2 (ENSLAFG00000000533) #28	ENSLAFG00000029919	PBX1 (ENSLAFG00000015741) #31	LMX1A (ENSLAFG00000005114)	RXRG (ENSLAFG00000008059)	LRRC52 (ENSLAFG00000009139)	ENSLAFG00000009103	ENSLAFG00000009105	TMCO1 (ENSLAFG00000015073)
Tenrec	MODERN SPECIES	1783																UAP1 (ENSETEG00000014862) #22
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00940000159078	ENSGT00940000166568	ENSGT00940000156348.C	ENSGT00940000158252	ENSGT01050000244808.A.b.a.a.a.d #10	ENSGT01050000244808.A.b.a.a.a.c #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.r #17	ENSGT00390000007598 #18	ENSGT00940000171984	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000162687	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00940000161169	ENSGT00940000159078	ENSGT00940000166568	ENSGT00940000156348.C	ENSGT00940000158252	ENSGT01050000244808.A.b.a.a.a.d #10	ENSGT01050000244808.A.b.a.a.a.c #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.r #17	ENSGT00390000007598 #18	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b	ENSGT00940000162904.a.b
Diprotodontia	ANCESTRAL SPECIES	7	ENSGT00940000161169	ENSGT00940000159078	ENSGT00940000166568	ENSGT00940000156348.C	ENSGT00940000158252	ENSGT01050000244808.A.b.a.a.a.d #10	ENSGT01050000244808.A.b.a.a.a.c.b #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.r #17	ENSGT00390000007598 #18	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b	ENSGT00940000162904.a.b
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00940000161169	ENSGT00940000159078	ENSGT00940000166568	ENSGT00940000156348.C	ENSGT00940000158252	ENSGT01050000244808.A.b.a.a.a.d #10	ENSGT01050000244808.A.b.a.a.a.c.b #10	ENSGT01050000244808.A.b.a.a.b #11	ENSGT01050000244808.D.fb.a #12	ENSGT00930000151041 #13	ENSGT00940000159221 #14	ENSGT00940000157757 #15	ENSGT00510000046975.b.r #17	ENSGT00390000007598 #18	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00390000014067 #25	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00940000154374.b #31	ENSGT00940000157774	ENSGT00940000161269	ENSGT00940000156906	ENSGT00390000008608	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.d	ENSGT00390000018059.b	ENSGT00940000162904.a.b
Common wonbat	MODERN SPECIES	1026				ENSVURG00010002021 #10	ENSVURG00010002046 #10	ENSVURG00010002111 #11	FCRLB (ENSVURG00010002122) #12	DUSP12 (ENSVURG00010002132) #13	ATF6 (ENSVURG00010002157) #14	ENSVURG00010002208	OLFML2B (ENSVURG00010002221) #15	ENSVURG00010002244 #17	SPATA46 (ENSVURG00010002259) #18	ENSVURG00010002267	UHMK1 (ENSVURG00010002279) #21	UAP1 (ENSVURG00010002313) #22	DDR2 (ENSVURG00010002364) #23	HSD17B7 (ENSVURG00010002394) #24	ENSVURG00010002420 #25	RGS4 (ENSVURG00010002438) #26	RGS5 (ENSVURG00010002460) #27	ENSVURG00010002469	PBX1 (ENSVURG00010002505) #31	LMX1A (ENSVURG00010002540)	ENSVURG00010002578	ENSVURG00010002587	LRRC52 (ENSVURG00010002610)	MGST3 (ENSVURG00010002620)	ALDH9A1 (ENSVURG00010002635)	TMCO1 (ENSVURG00010002648)	UCK2 (ENSVURG00010002670)
koala	MODERN SPECIES	32	ENSPCIG00000017625	ENSPCIG00000016330	ENSPCIG00000029745	ADGRL4 (ENSPCIG00000026590)	ENSPCIG00000012174 #10	ENSPCIG00000012170	ENSPCIG00000016259 #11	FCRLB (ENSPCIG00000016255) #12	DUSP12 (ENSPCIG00000016253) #13	ATF6 (ENSPCIG00000016241) #14	ENSPCIG00000033694 #15	SPATA46 (ENSPCIG00000021503) #18	ENSPCIG00000021501 #17	ENSPCIG00000021505	UHMK1 (ENSPCIG00000021507) #21	UAP1 (ENSPCIG00000021509) #22	ENSPCIG00000021511	DDR2 (ENSPCIG00000021515) #23	ENSPCIG00000031246 #25	HSD17B7 (ENSPCIG00000021518) #24	ENSPCIG00000033596	RGS4 (ENSPCIG00000036342) #26	RGS5 (ENSPCIG00000021522) #27	PBX1 (ENSPCIG00000027900) #31	LMX1A (ENSPCIG00000027901)	RXRG (ENSPCIG00000035780)
Wallaby	MODERN SPECIES	2613																UAP1 (ENSMEUG00000008912) #22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000007312	ENSSHAG00000024851	ENSSHAG00000025951 ##12	ENSSHAG00000003908 #10	ENSSHAG00000004270 #11	FCRLB (ENSSHAG00000004693) #12	DUSP12 (ENSSHAG00000028029) #13	ATF6 (ENSSHAG00000005867) #14	ENSSHAG00000023337	OLFML2B (ENSSHAG00000007992) #15	ENSSHAG00000009619 #17	SPATA46 (ENSSHAG00000011920) #18	ENSSHAG00000020806	ENSSHAG00000023655	UHMK1 (ENSSHAG00000012358) #21	UAP1 (ENSSHAG00000012681) #22	DDR2 (ENSSHAG00000013040) #23	HSD17B7 (ENSSHAG00000014052) #24	ENSSHAG00000014153 #25	RGS4 (ENSSHAG00000015164) #26	RGS5 (ENSSHAG00000015337) #27	ENSSHAG00000026214 #31	ENSSHAG00000012750 #31	LMX1A (ENSSHAG00000014535)	RXRG (ENSSHAG00000015367)	LRRC52 (ENSSHAG00000016033)	MGST3 (ENSSHAG00000016309)	ENSSHAG00000016425	TMCO1 (ENSSHAG00000020802)	UCK2 (ENSSHAG00000031760)	FAM78B (ENSSHAG00000031390)
Opossum	MODERN SPECIES	1	ENSMODG00000000927 #10	ENSMODG00000000936 #10	FCRLB (ENSMODG00000000945) #12	ENSMODG00000029016	ENSMODG00000029476	ENSMODG00000042379	DUSP12 (ENSMODG00000000962) #13	ATF6 (ENSMODG00000000980) #14	ENSMODG00000043123	ENSMODG00000000995 #15	ENSMODG00000001013 #17	SPATA46 (ENSMODG00000001019) #18	ENSMODG00000041400	ENSMODG00000001024	ENSMODG00000001048 #21	UAP1 (ENSMODG00000001084) #22	DDR2 (ENSMODG00000001151) #23	ENSMODG00000001090	HSD17B7 (ENSMODG00000001173) #24	ENSMODG00000001176 #25	RGS4 (ENSMODG00000001191) #26	RGS5 (ENSMODG00000001208) #27	ENSMODG00000048722	PBX1 (ENSMODG00000001238) #31	LMX1A (ENSMODG00000001270)	RXRG (ENSMODG00000001291)	ENSMODG00000040049	ENSMODG00000001296	MGST3 (ENSMODG00000001305)	ENSMODG00000001321	TMCO1 (ENSMODG00000001335)
Platypus	MODERN SPECIES	7	CHD1L (ENSOANG00000003068)	BCL9 (ENSOANG00000043707)	ENSOANG00000002805	GJA5 (ENSOANG00000008998)	GJA8 (ENSOANG00000037589)	ENSOANG00000009732	ENSOANG00000009733	PDZK1 (ENSOANG00000009734)	DUSP12 (ENSOANG00000046788) #13	ATF6 (ENSOANG00000009735) #14	OLFML2B (ENSOANG00000047415) #15	ENSOANG00000006737 #17	ENSOANG00000043289 #18	ENSOANG00000047114	ENSOANG00000037430 #21	UAP1 (ENSOANG00000015694) #22	DDR2 (ENSOANG00000010071) #23	ENSOANG00000046194	CASR (ENSOANG00000041729)	ENSOANG00000038962	ENSOANG00000036565	ENSOANG00000044955	FBXO40 (ENSOANG00000037008)	POLQ (ENSOANG00000004437)	STXBP5L (ENSOANG00000004799)	ENSOANG00000039503	RABL3 (ENSOANG00000003928)	HGD (ENSOANG00000003927)	ENSOANG00000005826	NDUFB4 (ENSOANG00000046502)	ENSOANG00000038378
Sauria	ANCESTRAL SPECIES	7	ENSGT00940000161011	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.d	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00510000046975.b.q #17	ENSGT00510000046975.b.p.b #17	ENSGT00390000007598 #18	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00990000207018	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000160168	ENSGT00940000161063	ENSGT00940000159036 #26	ENSGT00940000157380 #27
Lepidosauria	ANCESTRAL SPECIES	62	ENSGT00930000151043	ENSGT00390000003574	ENSGT00390000008371.a	ENSGT00390000014886	ENSGT00940000159466	ENSGT00940000167297	ENSGT00940000161339	ENSGT00940000161099.g	ENSGT00940000160945	ENSGT00940000161099.h	ENSGT00950000183161.b	ENSGT00940000158561	ENSGT00940000155005	ENSGT00390000015399	ENSGT00510000047399	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00990000207018	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000160168	ENSGT00940000161063	ENSGT00940000157380 #27
Episquamata	ANCESTRAL SPECIES	1	ENSGT00930000151043	ENSGT00390000003574	ENSGT00390000008371.a	ENSGT00390000014886	ENSGT00940000159466	ENSGT00940000167297	ENSGT00940000161339	ENSGT00940000161099.g	ENSGT00940000160945	ENSGT00940000161099.h	ENSGT00950000183161.b	ENSGT00940000158561	ENSGT00940000155005	ENSGT00390000015399	ENSGT00510000047399	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00990000207018	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000161063	ENSGT00940000157380 #27	ENSGT00390000011644	ENSGT00550000074794	ENSGT00520000059630	ENSGT00390000008829	ENSGT00940000155161	ENSGT00390000013877	ENSGT01030000234618.B	ENSGT00960000189748
Laterata	ANCESTRAL SPECIES	3										ENSGT00940000161099.h	ENSGT00950000183161.b	ENSGT00940000158561	ENSGT00940000155005	ENSGT00390000015399	ENSGT00510000047399	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00990000207018	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000157380 #27	ENSGT00390000011644	ENSGT00550000074794	ENSGT00520000059630	ENSGT00390000008829	ENSGT00940000155161	ENSGT00390000013877	ENSGT01030000234618.B	ENSGT00960000189748	ENSGT00940000159554
Common wall lizard	MODERN SPECIES	14	DHX9 (ENSPMRG00000000888)	ENSPMRG00000000960	RGS8 (ENSPMRG00000001004)	ENSPMRG00000001025	RNASEL (ENSPMRG00000001048)	RGSL1 (ENSPMRG00000001069)	GLUL (ENSPMRG00000001108)	ENSPMRG00000001146	PRRC2C (ENSPMRG00000001225)	ENSPMRG00000001490	ENSPMRG00000001496	MYOC (ENSPMRG00000001520)	VAMP4 (ENSPMRG00000001558)	ITPA (ENSPMRG00000001594)	METTL13 (ENSPMRG00000001612)	UAP1 (ENSPMRG00000001629) #22	DDR2 (ENSPMRG00000001648) #23	HSD17B7 (ENSPMRG00000001665) #24	OLFML2B (ENSPMRG00000001675) #15	ENSPMRG00000001689	RGS5 (ENSPMRG00000001707) #27	TADA1 (ENSPMRG00000001717)	PRDX6 (ENSPMRG00000001734)	ANKRD45 (ENSPMRG00000001756)	ENSPMRG00000001775	KLHL20 (ENSPMRG00000001784)	CENPL (ENSPMRG00000001798)	DARS2 (ENSPMRG00000001832)	ENSPMRG00000001954	ZBTB37 (ENSPMRG00000001995)	SERPINC1 (ENSPMRG00000002006)
Argentine black and white tegu	MODERN SPECIES	17	KIAA1614 (ENSSMRG00000011209)	XPR1 (ENSSMRG00000011166)	ACBD6 (ENSSMRG00000011157)	LHX4 (ENSSMRG00000011116)	QSOX1 (ENSSMRG00000011087)	CEP350 (ENSSMRG00000011085)	TOR1AIP1 (ENSSMRG00000011041)	TOR1AIP2 (ENSSMRG00000011040)	ENSSMRG00000011039	FAM163A (ENSSMRG00000011038)	TDRD5 (ENSSMRG00000010979)	NPHS2 (ENSSMRG00000010978)	ENSSMRG00000010977	ITPA (ENSSMRG00000010942)	METTL13 (ENSSMRG00000010939)	UAP1 (ENSSMRG00000010935) #22	DDR2 (ENSSMRG00000010930) #23	HSD17B7 (ENSSMRG00000010927) #24	ENSSMRG00000010919	OLFML2B (ENSSMRG00000010897) #15	ATF6 (ENSSMRG00000010890) #14	ENSSMRG00000010886	ENSSMRG00000010879	ENSSMRG00000010878	RGS5 (ENSSMRG00000010843) #27	TADA1 (ENSSMRG00000010838)	PRDX6 (ENSSMRG00000010834)	ENSSMRG00000010832	ANKRD45 (ENSSMRG00000010829)	KLHL20 (ENSSMRG00000010827)	CENPL (ENSSMRG00000010825)
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00930000151043	ENSGT00390000003574	ENSGT00390000008371.a	ENSGT00390000014886	ENSGT00940000159466	ENSGT00940000167297	ENSGT00940000161339	ENSGT00940000161099.g	ENSGT00940000160945	ENSGT00940000161099.h	ENSGT00950000183161.b	ENSGT00940000158561	ENSGT00940000155005	ENSGT00390000015399	ENSGT00510000047399	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00990000207018	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000160168	ENSGT00940000161063	ENSGT00940000157380 #27	ENSGT00390000011644	ENSGT00550000074794	ENSGT00390000008829	ENSGT00940000155161	ENSGT00390000013877	ENSGT01030000234618.B	ENSGT00960000189748
Elapidae	ANCESTRAL SPECIES	1	ENSGT00390000004791	ENSGT00930000151043	ENSGT00390000003574	ENSGT00390000014886	ENSGT00940000159466	ENSGT00940000167297	ENSGT00940000161339.c	ENSGT00940000161099.g	ENSGT00940000160945.a	ENSGT00940000161099.h	ENSGT00950000183161.b	ENSGT00940000158561	ENSGT00940000155005	ENSGT00390000015399	ENSGT00510000047399	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00990000207018	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000160168	ENSGT00940000161063	ENSGT00940000157380 #27	ENSGT00390000011644	ENSGT00550000074794	ENSGT00390000008829	ENSGT00940000155161	ENSGT00390000013877	ENSGT01030000234618.B	ENSGT00960000189748
Indian cobra	MODERN SPECIES	2	SCYL3 (ENSNNAG00000003103)	C1orf112 (ENSNNAG00000003016)	KIFAP3 (ENSNNAG00000002965)	GORAB (ENSNNAG00000002944)	PRRX1 (ENSNNAG00000002935)	ENSNNAG00000002893	FMO3 (ENSNNAG00000002863)	FMO2 (ENSNNAG00000002856)	FMO1 (ENSNNAG00000002849)	ENSNNAG00000002842	PRRC2C (ENSNNAG00000002426)	MYOC (ENSNNAG00000002298)	VAMP4 (ENSNNAG00000002284)	ITPA (ENSNNAG00000002275)	METTL13 (ENSNNAG00000002251)	UAP1 (ENSNNAG00000002213) #22	DDR2 (ENSNNAG00000002186) #23	HSD17B7 (ENSNNAG00000002158) #24	OLFML2B (ENSNNAG00000002130) #15	ATF6 (ENSNNAG00000002075) #14	ENSNNAG00000001997	RGS5 (ENSNNAG00000001961) #27	TADA1 (ENSNNAG00000001942)	PRDX6 (ENSNNAG00000001925)	ANKRD45 (ENSNNAG00000001904)	KLHL20 (ENSNNAG00000001872)	CENPL (ENSNNAG00000001856)	DARS2 (ENSNNAG00000000860)	ZBTB37 (ENSNNAG00000000726)	SERPINC1 (ENSNNAG00000017154)	RC3H1 (ENSNNAG00000017143)
Elapidae_a	ANCESTRAL SPECIES	32	ENSGT00390000004791.i	ENSGT00930000151043	ENSGT00390000003574	ENSGT00390000014886	ENSGT00940000159466	ENSGT00940000167297.b	ENSGT00940000161339.c	ENSGT00940000161099.g	ENSGT00940000160945.a	ENSGT00940000161099.h	ENSGT00950000183161.b	ENSGT00940000158561	ENSGT00940000155005	ENSGT00390000015399	ENSGT00510000047399	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00990000207018	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000160168	ENSGT00940000161063	ENSGT00940000157380 #27	ENSGT00390000011644	ENSGT00550000074794	ENSGT00390000008829	ENSGT00940000155161	ENSGT00390000013877	ENSGT01030000234618.B	ENSGT00960000189748
Acanthophiinae	ANCESTRAL SPECIES	33	ENSGT00390000004791.i	ENSGT00930000151043	ENSGT00390000003574	ENSGT00390000014886	ENSGT00940000159466	ENSGT00940000167297.b	ENSGT00940000161339.c	ENSGT00940000161099.g	ENSGT00940000160945.a	ENSGT00940000161099.h	ENSGT00950000183161.b	ENSGT00940000158561	ENSGT00940000155005	ENSGT00390000015399	ENSGT00510000047399	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00990000207018	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000160168	ENSGT00940000161063	ENSGT00940000157380 #27	ENSGT00390000011644	ENSGT00550000074794	ENSGT00390000008829	ENSGT00940000155161	ENSGT00390000013877	ENSGT01030000234618.B	ENSGT00960000189748
Mainland tiger snake	MODERN SPECIES	312											PRRC2C (ENSNSUG00000010318)	MYOC (ENSNSUG00000011092)	VAMP4 (ENSNSUG00000011094)	ITPA (ENSNSUG00000011096)	METTL13 (ENSNSUG00000011097)	UAP1 (ENSNSUG00000011099) #22	DDR2 (ENSNSUG00000011122) #23	ENSNSUG00000011124 #24	OLFML2B (ENSNSUG00000011128) #15	ENSNSUG00000011130 #14	ENSNSUG00000011132
Eastern brown snake	MODERN SPECIES	21	C1orf112 (ENSPTXG00000004370)	SCYL3 (ENSPTXG00000004368)	KIFAP3 (ENSPTXG00000004367)	GORAB (ENSPTXG00000004366)	PRRX1 (ENSPTXG00000004365)	ENSPTXG00000004364	FMO3 (ENSPTXG00000004363)	FMO2 (ENSPTXG00000004361)	FMO1 (ENSPTXG00000004360)	ENSPTXG00000004359	PRRC2C (ENSPTXG00000004355)	MYOC (ENSPTXG00000004354)	VAMP4 (ENSPTXG00000004352)	ITPA (ENSPTXG00000004351)	METTL13 (ENSPTXG00000004350)	UAP1 (ENSPTXG00000004349) #22	DDR2 (ENSPTXG00000004348) #23	HSD17B7 (ENSPTXG00000004347) #24	ENSPTXG00000004346	OLFML2B (ENSPTXG00000004345) #15	ATF6 (ENSPTXG00000004344) #14	ENSPTXG00000004343	ENSPTXG00000004342	RGS5 (ENSPTXG00000004341) #27	TADA1 (ENSPTXG00000004340)	PRDX6 (ENSPTXG00000004339)	ANKRD45 (ENSPTXG00000004338)	KLHL20 (ENSPTXG00000004337)	CENPL (ENSPTXG00000004336)	DARS2 (ENSPTXG00000003910)	ZBTB37 (ENSPTXG00000003897)
Blue-lipped sea krait	MODERN SPECIES	9978																UAP1 (ENSLLTG00000012673) #22
Lizard	MODERN SPECIES	914	ENSACAG00000036387	FMO2 (ENSACAG00000013187)	ENSACAG00000013117	ENSACAG00000013020	GORAB (ENSACAG00000013005)	NTMT2 (ENSACAG00000012993)	KIFAP3 (ENSACAG00000012884)	SCYL3 (ENSACAG00000012830)	ENSACAG00000034894	ENSACAG00000036834	ENSACAG00000012783	PRRC2C (ENSACAG00000029194)	VAMP4 (ENSACAG00000012702)	ENSACAG00000012674	METTL13 (ENSACAG00000012638)	UAP1 (ENSACAG00000012562) #22	ENSACAG00000012439 #23	HSD17B7 (ENSACAG00000012384) #24	NPHS2 (ENSACAG00000012336)	ENSACAG00000012335	SOAT1 (ENSACAG00000028257)	ENSACAG00000012264	ENSACAG00000012151	FAM20B (ENSACAG00000013109)	ENSACAG00000022838	ANGPTL1 (ENSACAG00000013089)	RALGPS2 (ENSACAG00000012902)	ENSACAG00000036805	RASAL2 (ENSACAG00000012811)	ENSACAG00000012790	SEC16B (ENSACAG00000012601)
tuatara	MODERN SPECIES	133	KIFAP3 (ENSSPUG00000013756)	NTMT2 (ENSSPUG00000014727)	ENSSPUG00000014737	PRRX1 (ENSSPUG00000014750)	ENSSPUG00000014765	FMO3 (ENSSPUG00000014792)	ENSSPUG00000014847	FMO1 (ENSSPUG00000014892)	PRRC2C (ENSSPUG00000014912)	ENSSPUG00000014944	ENSSPUG00000014948	ENSSPUG00000014958	ENSSPUG00000014968	ITPA (ENSSPUG00000014977)	METTL13 (ENSSPUG00000014997)	UAP1 (ENSSPUG00000015046) #22	ENSSPUG00000015088	DDR2 (ENSSPUG00000015102) #23	HSD17B7 (ENSSPUG00000015129) #24	ENSSPUG00000015144 #15	ENSSPUG00000015148 #15	ENSSPUG00000015155 #15	ENSSPUG00000015198	MRPL28 (ENSSPUG00000015322)
Archelosauria	ANCESTRAL SPECIES	9	ENSGT00390000006096.a.a	ENSGT00940000161011	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.d	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00510000046975.b.q #17	ENSGT00390000007598 #18	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00990000207018	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000160168	ENSGT00940000159036 #26	ENSGT00940000157380 #27
Archosauria	ANCESTRAL SPECIES	27	ENSGT00390000006096.a.a	ENSGT00940000161011	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.d	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00390000007598 #18	ENSGT00510000046975.b.q #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000161063
Aves	ANCESTRAL SPECIES	7	ENSGT00390000006096.a.a	ENSGT00940000161011	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.d	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00510000046975.b.q #17	ENSGT00390000007598 #18	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000161063	ENSGT00390000010118	ENSGT00390000008184	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00940000161034	ENSGT00940000161004	ENSGT00940000157316	ENSGT00940000158520	ENSGT01040000241718	ENSGT00940000157937
Neognathae	ANCESTRAL SPECIES	8	ENSGT00390000006096.a.a	ENSGT00940000161011	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.d	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00510000046975.b.q #17	ENSGT00390000007598 #18	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000161063	ENSGT00390000010118	ENSGT00390000008184	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00940000161034	ENSGT00940000161004	ENSGT00940000157316	ENSGT00940000158520	ENSGT01040000241718	ENSGT00940000157937
Neognathae_b	ANCESTRAL SPECIES	10	ENSGT00390000006096.a.a	ENSGT00940000161011	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.d	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00510000046975.b.q #17	ENSGT00390000007598 #18	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000161063	ENSGT00390000010118	ENSGT00390000008184	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00940000161034	ENSGT00940000161004	ENSGT00940000157316	ENSGT00940000158520	ENSGT01040000241718	ENSGT00940000157937
Neognathae_c	ANCESTRAL SPECIES	7	ENSGT00940000155863	ENSGT00390000006096.a.a	ENSGT00940000161011	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00510000046975.b.q #17	ENSGT00390000007598 #18	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00390000010118	ENSGT00390000008184	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00940000161034	ENSGT00940000161004	ENSGT00940000157316	ENSGT00940000158520	ENSGT01040000241718	ENSGT00940000157937	ENSGT00940000155195
Kakapo	MODERN SPECIES	25	PHGDH (ENSSHBG00005005502)	HMGCS2 (ENSSHBG00005005589)	ENSSHBG00005005608	NOTCH2 (ENSSHBG00005006669)	SEC22B (ENSSHBG00005018280)	PACS2 (ENSSHBG00005018285)	MTA1 (ENSSHBG00005018289)	CRIP2 (ENSSHBG00005018294)	CRIP1 (ENSSHBG00005018297)	TEDC1 (ENSSHBG00005018300)	TMEM121 (ENSSHBG00005018303)	ENSSHBG00005018306 #17	SPATA46 (ENSSHBG00005018309) #18	ENSSHBG00005018311	UHMK1 (ENSSHBG00005018314) #21	UAP1 (ENSSHBG00005018318) #22	DDR2 (ENSSHBG00005018322) #23	HSD17B7 (ENSSHBG00005018325) #24	OLFML2B (ENSSHBG00005018329) #15	ATF6 (ENSSHBG00005018332) #14	ENSSHBG00005018338	ENSSHBG00005018341	HTATIP2 (ENSSHBG00005018343)	RGS5 (ENSSHBG00005018346) #27	RGS4 (ENSSHBG00005018348) #26	RGS18 (ENSSHBG00005018351)	RGS21 (ENSSHBG00005018353)	PXYLP1 (ENSSHBG00005018355)	PDC (ENSSHBG00005018362)	PTGS2 (ENSSHBG00005018365)	PLA2G4A (ENSSHBG00005018368)
Golden eagle	MODERN SPECIES	3	PHGDH (ENSACCG00020016168)	HMGCS2 (ENSACCG00020016155)	REG4 (ENSACCG00020016143)	NOTCH2 (ENSACCG00020015594)	SEC22B (ENSACCG00020014855)	PACS2 (ENSACCG00020014813)	MTA1 (ENSACCG00020014761)	CRIP2 (ENSACCG00020014742)	CRIP1 (ENSACCG00020014733)	TEDC1 (ENSACCG00020014715)	TMEM121 (ENSACCG00020014698)	SPATA46 (ENSACCG00020014688) #18	ENSACCG00020014674 #17	ENSACCG00020014657	UHMK1 (ENSACCG00020014642) #21	UAP1 (ENSACCG00020014625) #22	DDR2 (ENSACCG00020014598) #23	HSD17B7 (ENSACCG00020014578) #24	OLFML2B (ENSACCG00020014565) #15	ATF6 (ENSACCG00020014542) #14	ENSACCG00020014486	ENSACCG00020014454	HTATIP2 (ENSACCG00020014439)	RGS5 (ENSACCG00020014426) #27	RGS4 (ENSACCG00020014415) #26	RGS18 (ENSACCG00020014385)	RGS21 (ENSACCG00020014376)	RGS1 (ENSACCG00020014364)	ENSACCG00020014349	ENSACCG00020014334	LSM7 (ENSACCG00020014318)
Passeriformes	ANCESTRAL SPECIES	8	ENSGT00940000155863	ENSGT00390000006096.a.a	ENSGT01040000240999	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.d	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00510000046975.b.q #17	ENSGT00940000168828	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000161063	ENSGT00390000010118	ENSGT00390000008184	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00940000161034	ENSGT00940000161004	ENSGT00940000157316	ENSGT00940000158520	ENSGT00940000157937
Passeriformes_d	ANCESTRAL SPECIES	9	ENSGT00940000155863	ENSGT00390000006096.a.a	ENSGT01040000240999	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.d	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00510000046975.b.q #17	ENSGT00940000168828	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00390000010118	ENSGT00390000008184	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00940000161034	ENSGT00940000161004	ENSGT00940000157316	ENSGT00940000158520	ENSGT00940000157937
Passeriformes_g	ANCESTRAL SPECIES	41	ENSGT00940000155863	ENSGT00390000006096.a.a	ENSGT01040000240999	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00510000046975.b.q #17	ENSGT00940000168828	ENSGT01040000244588	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00390000010118	ENSGT00390000008184	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00940000161034	ENSGT00940000161004	ENSGT00940000157316	ENSGT00940000158520	ENSGT00940000157937	ENSGT00950000183155.a.b.b.j.a
Passeroidea	ANCESTRAL SPECIES	40	ENSGT00950000183190.a.a.b	ENSGT00940000155863	ENSGT00390000006096.a.a	ENSGT01040000240999	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00510000046975.b.q #17	ENSGT00940000168828	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00390000010118	ENSGT00390000008184	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00940000161034	ENSGT00940000161004	ENSGT00940000157316	ENSGT00940000158520	ENSGT00940000157937	ENSGT00950000183155.a.b.b.j.a
Common canary	MODERN SPECIES	94												TMEM121 (ENSSCAG00000017257)	ENSSCAG00000017259 #17	ENSSCAG00000017263	UHMK1 (ENSSCAG00000017266) #21	UAP1 (ENSSCAG00000017278) #22	DDR2 (ENSSCAG00000017287) #23	HSD17B7 (ENSSCAG00000017291) #24	OLFML2B (ENSSCAG00000017295) #15	ATF6 (ENSSCAG00000017298) #14	ENSSCAG00000017301	ENSSCAG00000017302	HTATIP2 (ENSSCAG00000017303)	RGS5 (ENSSCAG00000017305) #27	RGS4 (ENSSCAG00000017306) #26	RGS18 (ENSSCAG00000017307)	RGS21 (ENSSCAG00000017309)	RGS1 (ENSSCAG00000000999)	ENSSCAG00000001004	RGS2 (ENSSCAG00000001015)	ENSSCAG00000001028
Medium ground finch	MODERN SPECIES	124	PDE4DIP (ENSGFOG00000010333)	PHGDH (ENSGFOG00000010318)	HMGCS2 (ENSGFOG00000010314)	ENSGFOG00000010309	NOTCH2 (ENSGFOG00000009054)	PACS2 (ENSGFOG00000013363)	MTA1 (ENSGFOG00000012922)	CRIP2 (ENSGFOG00000012890)	CRIP1 (ENSGFOG00000012885)	TEDC1 (ENSGFOG00000012882)	TMEM121 (ENSGFOG00000012880)	ENSGFOG00000012879	ENSGFOG00000012875 #17	ENSGFOG00000012870	UHMK1 (ENSGFOG00000012866) #21	UAP1 (ENSGFOG00000012862) #22	DDR2 (ENSGFOG00000012852) #23	HSD17B7 (ENSGFOG00000012847) #24	OLFML2B (ENSGFOG00000012843) #15	ATF6 (ENSGFOG00000012818) #14	ENSGFOG00000012760	ENSGFOG00000012740	ENSGFOG00000012736	RGS5 (ENSGFOG00000012734) #27	RGS4 (ENSGFOG00000012733) #26	RGS18 (ENSGFOG00000012730)	RGS21 (ENSGFOG00000012726)	RGS1 (ENSGFOG00000012719)	ENSGFOG00000012714	RGS2 (ENSGFOG00000012712)	ENSGFOG00000012702
Flycatcher	MODERN SPECIES	27	ENSFALG00000025163	SEC22B (ENSFALG00000003606)	PACS2 (ENSFALG00000003599)	ENSFALG00000023096	MTA1 (ENSFALG00000003592)	CRIP2 (ENSFALG00000028733)	ENSFALG00000023674	ENSFALG00000026183	CRIP1 (ENSFALG00000026248)	ENSFALG00000003562	TMEM121 (ENSFALG00000014517)	ENSFALG00000003550 #17	ENSFALG00000027377	ENSFALG00000024755	UHMK1 (ENSFALG00000025386) #21	UAP1 (ENSFALG00000003533) #22	DDR2 (ENSFALG00000003523) #23	HSD17B7 (ENSFALG00000003516) #24	ENSFALG00000003509 #15	ENSFALG00000026032 #14	ENSFALG00000003474	ENSFALG00000003469	ENSFALG00000003462 #27	ENSFALG00000003444 #26	RGS18 (ENSFALG00000023309)	RGS21 (ENSFALG00000025807)	RGS1 (ENSFALG00000003421)	ENSFALG00000023895	RGS2 (ENSFALG00000003405)	BRINP3 (ENSFALG00000003394)	ENSFALG00000023271
Great tit	MODERN SPECIES	268															ENSPMJG00000006515 #17	UAP1 (ENSPMJG00000006521) #22	DDR2 (ENSPMJG00000006536) #23	HSD17B7 (ENSPMJG00000006540) #24	OLFML2B (ENSPMJG00000006543) #15	ATF6 (ENSPMJG00000006546) #14	ENSPMJG00000006550	ENSPMJG00000006572	HTATIP2 (ENSPMJG00000006573)	RGS5 (ENSPMJG00000006576) #27	RGS4 (ENSPMJG00000006577) #26	RGS18 (ENSPMJG00000006581)	RGS21 (ENSPMJG00000006582)	RGS1 (ENSPMJG00000006583)	RGS13 (ENSPMJG00000006584)	RGS2 (ENSPMJG00000006585)
Galloanserae	ANCESTRAL SPECIES	8	ENSGT00390000006096.a.a	ENSGT00940000161011	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.d	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00510000046975.b.q #17	ENSGT00940000164616	ENSGT00390000007598 #18	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00390000010118	ENSGT00390000008184	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00940000161034	ENSGT00940000161004	ENSGT00940000157316	ENSGT00940000158520	ENSGT00940000157937	ENSGT00940000155195	ENSGT00390000006200
Anatidae	ANCESTRAL SPECIES	5	ENSGT00390000006096.a.a	ENSGT01040000240999	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.d	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00510000046975.b.q #17	ENSGT00940000164616	ENSGT00390000007598 #18	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00390000010118	ENSGT00390000008184	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00940000161034	ENSGT00940000161004	ENSGT00940000157316	ENSGT00940000157937	ENSGT00940000155195	ENSGT00390000006200	ENSGT00940000162420
Pink-footed goose	MODERN SPECIES	84	ENSABRG00000022939	PHGDH (ENSABRG00000022940)	HMGCS2 (ENSABRG00000022941)	NOTCH2 (ENSABRG00000022942)	SEC22B (ENSABRG00000022943)	PACS2 (ENSABRG00000022944)	ENSABRG00000022945	MTA1 (ENSABRG00000022946)	CRIP2 (ENSABRG00000022947)	CRIP1 (ENSABRG00000022948)	TEDC1 (ENSABRG00000022949)	TMEM121 (ENSABRG00000022951)	ENSABRG00000022954 #17	ENSABRG00000022955	UHMK1 (ENSABRG00000022956) #21	UAP1 (ENSABRG00000022957) #22	DDR2 (ENSABRG00000022958) #23	HSD17B7 (ENSABRG00000022959) #24	OLFML2B (ENSABRG00000022960) #15	ATF6 (ENSABRG00000022961) #14	ENSABRG00000022962	ENSABRG00000022964	RGS5 (ENSABRG00000022965) #27	RGS4 (ENSABRG00000022966) #26	RGS18 (ENSABRG00000022968)	RGS21 (ENSABRG00000022969)	RGS1 (ENSABRG00000022970)	RGS2 (ENSABRG00000022972)	UCHL5 (ENSABRG00000022973)	RO60 (ENSABRG00000022974)	GLRX2 (ENSABRG00000022975)
Duck	MODERN SPECIES	26	PHGDH (ENSAPLG00000027527)	ENSAPLG00000031083	HMGCS2 (ENSAPLG00000016193)	NOTCH2 (ENSAPLG00000015861)	SEC22B (ENSAPLG00000015847)	PACS2 (ENSAPLG00000015577)	MTA1 (ENSAPLG00000015316)	CRIP2 (ENSAPLG00000015110)	CRIP1 (ENSAPLG00000014982)	TEDC1 (ENSAPLG00000014968)	TMEM121 (ENSAPLG00000013683)	ENSAPLG00000014905 #17	ENSAPLG00000023414	SPATA46 (ENSAPLG00000025054) #18	UHMK1 (ENSAPLG00000014799) #21	UAP1 (ENSAPLG00000014521) #22	DDR2 (ENSAPLG00000014258) #23	HSD17B7 (ENSAPLG00000014241) #24	OLFML2B (ENSAPLG00000014054) #15	ATF6 (ENSAPLG00000013950) #14	ENSAPLG00000013340	ENSAPLG00000028091	HTATIP2 (ENSAPLG00000016049)	RGS5 (ENSAPLG00000016064) #27	RGS4 (ENSAPLG00000000572) #26	RGS18 (ENSAPLG00000002011)	RGS21 (ENSAPLG00000002310)	RGS1 (ENSAPLG00000002313)	RGS2 (ENSAPLG00000002397)	UCHL5 (ENSAPLG00000002704)	RO60 (ENSAPLG00000003121)
Phasianidae	ANCESTRAL SPECIES	7	ENSGT00940000155863	ENSGT00390000006096.a.a	ENSGT00940000161011	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000168828	ENSGT00510000046975.b.q #17	ENSGT01070000257182	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00390000010118	ENSGT00390000008184	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00940000161034	ENSGT00940000161004	ENSGT00940000157316	ENSGT00940000158520	ENSGT00940000157937	ENSGT00940000155195	ENSGT00390000006200
Japanese quail	MODERN SPECIES	26	ENSCJPG00005021294	ENSCJPG00005021293	ENSCJPG00005021292	HMGCS2 (ENSCJPG00005021290)	NOTCH2 (ENSCJPG00005021260)	SEC22B (ENSCJPG00005021243)	PACS2 (ENSCJPG00005021231)	MTA1 (ENSCJPG00005021230)	CRIP2 (ENSCJPG00005021229)	CRIP1 (ENSCJPG00005021228)	TEDC1 (ENSCJPG00005021227)	TMEM121 (ENSCJPG00005021226)	ENSCJPG00005021225	ENSCJPG00005021224 #17	UHMK1 (ENSCJPG00005021223) #21	UAP1 (ENSCJPG00005021222) #22	DDR2 (ENSCJPG00005021220) #23	HSD17B7 (ENSCJPG00005021219) #24	OLFML2B (ENSCJPG00005021218) #15	ATF6 (ENSCJPG00005021217) #14	ENSCJPG00005021216	ENSCJPG00005021215	ENSCJPG00005021214	HTATIP2 (ENSCJPG00005021213)	RGS5 (ENSCJPG00005021212) #27	RGS4 (ENSCJPG00005021211) #26	RGS18 (ENSCJPG00005021210)	RGS21 (ENSCJPG00005021209)	RGS1 (ENSCJPG00005021208)	RGS13 (ENSCJPG00005021207)	RGS2 (ENSCJPG00005021206)
Phasianidae_b	ANCESTRAL SPECIES	7	ENSGT00940000155863	ENSGT00390000006096.a.a	ENSGT00940000161011	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000168828	ENSGT00510000046975.b.q #17	ENSGT01070000257182	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00390000008184	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00940000161034	ENSGT00940000161004	ENSGT00940000157316	ENSGT00940000158520	ENSGT00940000157937	ENSGT00940000155195	ENSGT00390000006200	ENSGT00940000162420
Chicken	MODERN SPECIES	37	PHGDH (ENSGALG00010013380)	HMGCS2 (ENSGALG00010013346)	REG4 (ENSGALG00010013342)	NOTCH2 (ENSGALG00010013323)	SEC22B (ENSGALG00010013282)	PACS2 (ENSGALG00010013265)	MTA1 (ENSGALG00010013251)	CRIP2 (ENSGALG00010013212)	CRIP1 (ENSGALG00010013158)	TEDC1 (ENSGALG00010013144)	TMEM121 (ENSGALG00010013137)	ENSGALG00010013056	ENSGALG00010013044 #17	ENSGALG00010013036	UHMK1 (ENSGALG00010013027) #21	UAP1 (ENSGALG00010013004) #22	DDR2 (ENSGALG00010012982) #23	HSD17B7 (ENSGALG00010012978) #24	OLFML2B (ENSGALG00010012958) #15	ATF6 (ENSGALG00010012932) #14	ENSGALG00010012915	HTATIP2 (ENSGALG00010012869)	ENSGALG00010012851	RGS5 (ENSGALG00010012829) #27	RGS18 (ENSGALG00010012818)	RGS21 (ENSGALG00010012806)	RGS1 (ENSGALG00010012788)	RGS13 (ENSGALG00010012783)	RGS4 (ENSGALG00010012749) #26	RGS2 (ENSGALG00010012714)	UCHL5 (ENSGALG00010012693)
Turkey	MODERN SPECIES	1	ENSMGAG00000021120	UCHL5 (ENSMGAG00000005403)	RGS2 (ENSMGAG00000005380)	ENSMGAG00000005362	ENSMGAG00000019900	ENSMGAG00000005230	ENSMGAG00000005233 #27	ENSMGAG00000020422 #26	ENSMGAG00000005338	ENSMGAG00000005358	ENSMGAG00000005296	ENSMGAG00000005162 #15	ENSMGAG00000005185 #14	ENSMGAG00000005095 #23	ENSMGAG00000005133 #24	UAP1 (ENSMGAG00000005073) #22	ENSMGAG00000005043 #21	ENSMGAG00000005025 #17	ENSMGAG00000005039	ENSMGAG00000005017	ENSMGAG00000018164	ENSMGAG00000021550	ENSMGAG00000017246	ENSMGAG00000004954	ENSMGAG00000004786	ENSMGAG00000004881	ENSMGAG00000004771	ENSMGAG00000021888	ENSMGAG00000004553	ENSMGAG00000004570	ENSMGAG00000004592
African ostrich	MODERN SPECIES	434	IWS1 (ENSSCUG00000009716)	ENSSCUG00000009724	ENSSCUG00000009725	DGKD (ENSSCUG00000009727)	SAG (ENSSCUG00000009735)	ATG16L1 (ENSSCUG00000009744)	INPP5D (ENSSCUG00000009749)	NEU2 (ENSSCUG00000009751)	NGEF (ENSSCUG00000009754)	GIGYF2 (ENSSCUG00000009792)	KCNJ13 (ENSSCUG00000009831)	ENSSCUG00000009834	TMEM121 (ENSSCUG00000009837)	ENSSCUG00000009840 #17	UHMK1 (ENSSCUG00000009842) #21	UAP1 (ENSSCUG00000009849) #22	DDR2 (ENSSCUG00000009859) #23	HSD17B7 (ENSSCUG00000009860) #24	OLFML2B (ENSSCUG00000009861) #15	ATF6 (ENSSCUG00000009863) #14	ENSSCUG00000009864	ENSSCUG00000009865	HTATIP2 (ENSSCUG00000009867)	RGS5 (ENSSCUG00000009868) #27	RGS2 (ENSSCUG00000009869)	RGS4 (ENSSCUG00000009871) #26	RGS18 (ENSSCUG00000009873)	RGS21 (ENSSCUG00000009875)	RGS1 (ENSSCUG00000009876)	RGS13 (ENSSCUG00000009881)	UCHL5 (ENSSCUG00000009886)
Australian saltwater crocodile	MODERN SPECIES	28	PHGDH (ENSCPRG00005003122)	HMGCS2 (ENSCPRG00005003094)	ENSCPRG00005003091	ENSCPRG00005003087	NOTCH2 (ENSCPRG00005001488)	SEC22B (ENSCPRG00005001287)	PACS2 (ENSCPRG00005001267)	MTA1 (ENSCPRG00005001248)	CRIP2 (ENSCPRG00005001228)	CRIP1 (ENSCPRG00005001226)	TEDC1 (ENSCPRG00005001201)	TMEM121 (ENSCPRG00005001148)	SPATA46 (ENSCPRG00005001118) #18	ENSCPRG00005001113 #17	UHMK1 (ENSCPRG00005001107) #21	UAP1 (ENSCPRG00005001099) #22	DDR2 (ENSCPRG00005001059) #23	HSD17B7 (ENSCPRG00005001052) #24	OLFML2B (ENSCPRG00005001039) #15	ATF6 (ENSCPRG00005001010) #14	RGS21 (ENSCPRG00005000977)	ENSCPRG00005000962	RGS1 (ENSCPRG00005000959)	RGS13 (ENSCPRG00005000957)	ENSCPRG00005000954	RGS2 (ENSCPRG00005000953)	UCHL5 (ENSCPRG00005000938)	RO60 (ENSCPRG00005000924)	GLRX2 (ENSCPRG00005000920)	B3GALT2 (ENSCPRG00005000918)	CDC73 (ENSCPRG00005000909)
Cryptodira	ANCESTRAL SPECIES	8	ENSGT00390000006096.a.a	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.d	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00510000046975.b.q #17	ENSGT00510000046975.b.p.b #17	ENSGT00390000007598 #18	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00990000207018	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000161063	ENSGT00940000159036 #26	ENSGT00940000157380 #27
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00390000006096.a.a	ENSGT00940000155030	ENSGT00940000156349	ENSGT00950000183209.b.b	ENSGT01030000234573.B.d	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00510000046975.b.q #17	ENSGT00510000046975.b.p.b #17	ENSGT00390000007598 #18	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00990000207018	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000161063.b	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00940000160403	ENSGT00940000181346	ENSGT00690000103768	ENSGT00390000002137	ENSGT00940000155521	ENSGT00940000164810	ENSGT00940000158869
Emydidae	ANCESTRAL SPECIES	11												ENSGT00510000046975.b.p.b #17	ENSGT00390000007598 #18	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000160168	ENSGT00940000161063.b	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00940000160403	ENSGT00390000002137	ENSGT00940000155521	ENSGT00940000164810	ENSGT00940000158869	ENSGT00510000046732.B	ENSGT00940000160541
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	99	ENSTMTG00000006821	ENSTMTG00000006788	ENSTMTG00000006780	ENSTMTG00000005012	ENSTMTG00000004791	ENSTMTG00000004645	ENSTMTG00000003429	ENSTMTG00000003278	ENSTMTG00000003218	ENSTMTG00000003204	ENSTMTG00000003196	ENSTMTG00000003168 #17	ENSTMTG00000003148	ENSTMTG00000003131	ENSTMTG00000003114 #21	ENSTMTG00000003100 #22	ENSTMTG00000021854 #23	ENSTMTG00000021835 #24	ENSTMTG00000021828	CCDC190 (ENSTMTG00000021820) #25	ENSTMTG00000021816 #15	ENSTMTG00000021793 #14	ENSTMTG00000021763	ENSTMTG00000021747 #26	ENSTMTG00000021741 #27
Three-toed box turtle	MODERN SPECIES	97	ENSTMTG00000019952	ENSTMTG00000019942	ENSTMTG00000014264	ENSTMTG00000013777	ENSTMTG00000013707	ENSTMTG00000008560	ENSTMTG00000008227	ENSTMTG00000008196	ENSTMTG00000008183	ENSTMTG00000008174	ENSTMTG00000008159 #17	ENSTMTG00000008146 #17	SPATA46 (ENSTMTG00000008141) #18	ENSTMTG00000008130	ENSTMTG00000008120 #21	ENSTMTG00000008089 #22	ENSTMTG00000007570 #23	ENSTMTG00000007504 #24	ENSTMTG00000007441 #15	ENSTMTG00000007417 #14	ENSTMTG00000007337	ENSTMTG00000007317 #26	ENSTMTG00000007294 #27
painted turtle	MODERN SPECIES	1028												ENSCPBG00000017977 #17	SPATA46 (ENSCPBG00000017975) #18	ENSCPBG00000017973	UHMK1 (ENSCPBG00000017971) #21	UAP1 (ENSCPBG00000017966) #22	DDR2 (ENSCPBG00000017962) #23	HSD17B7 (ENSCPBG00000017958) #24
Testudinidae	ANCESTRAL SPECIES	16											ENSGT00390000003866.a.b	ENSGT00510000046975.b.q #17	ENSGT00390000007598 #18	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00990000207018	ENSGT00940000157757 #15	ENSGT00940000159221 #14	ENSGT00940000161063.b	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00940000160403	ENSGT00940000181346	ENSGT00690000103768	ENSGT00390000002137	ENSGT00940000155521	ENSGT00940000164810	ENSGT00940000158869
Goode s thornscrub tortoise	MODERN SPECIES	22	ENSGEVG00005006836	PHGDH (ENSGEVG00005006807)	HMGCS2 (ENSGEVG00005006695)	NOTCH2 (ENSGEVG00005005781)	SEC22B (ENSGEVG00005005497)	PACS2 (ENSGEVG00005005436)	MTA1 (ENSGEVG00005005055)	CRIP2 (ENSGEVG00005004907)	CRIP1 (ENSGEVG00005004878)	ENSGEVG00005004856	ENSGEVG00005004835	ENSGEVG00005004767 #17	SPATA46 (ENSGEVG00005004742) #18	ENSGEVG00005004724	UHMK1 (ENSGEVG00005004702) #21	UAP1 (ENSGEVG00005004650) #22	ENSGEVG00005004621	DDR2 (ENSGEVG00005004593) #23	HSD17B7 (ENSGEVG00005004562) #24	ENSGEVG00005004532	OLFML2B (ENSGEVG00005004519) #15	ATF6 (ENSGEVG00005004476) #14	SELP (ENSGEVG00005004306)	RGS4 (ENSGEVG00005004231) #26	RGS5 (ENSGEVG00005004212) #27	ENSGEVG00005004184	PCDH12 (ENSGEVG00005004148)	ENSGEVG00005004131	ENSGEVG00005004123	DELE1 (ENSGEVG00005004039)	ENSGEVG00005019378
Abingdon island giant tortoise	MODERN SPECIES	1576											TMEM121 (ENSCABG00000020763)	ENSCABG00000020759 #17	SPATA46 (ENSCABG00000020756) #18	ENSCABG00000020753	UHMK1 (ENSCABG00000020751) #21	UAP1 (ENSCABG00000020743) #22	DDR2 (ENSCABG00000020741) #23	HSD17B7 (ENSCABG00000020696) #24
Chinese turtle	MODERN SPECIES	2203											PACS2 (ENSPSIG00000013056)	CRIP1 (ENSPSIG00000014406)	TEDC1 (ENSPSIG00000014486)	TMEM121 (ENSPSIG00000000670)	UHMK1 (ENSPSIG00000014622) #21	UAP1 (ENSPSIG00000014943) #22	ENSPSIG00000000683	DDR2 (ENSPSIG00000015122) #23	HSD17B7 (ENSPSIG00000015963) #24	OLFML2B (ENSPSIG00000016495) #15	ATF6 (ENSPSIG00000016522) #14	SELP (ENSPSIG00000017549)	RGS4 (ENSPSIG00000017597) #26	ENSPSIG00000017751 #27	ENSPSIG00000017762 #27	ENSPSIG00000000703
Anura	ANCESTRAL SPECIES	6	ENSGT01060000248544.a.a.b.a.b	ENSGT00390000013502.b	ENSGT00390000005496	ENSGT00940000158056	ENSGT00510000047399	ENSGT00390000015399.j	ENSGT00940000155005	ENSGT00940000158561	ENSGT00950000183161.b	ENSGT00940000161099.i.a	ENSGT00940000161339	ENSGT00940000160256	ENSGT00940000160836.d.c.a	ENSGT00940000160493	ENSGT00940000160836.d.d	ENSGT00940000153464.A.b #22	ENSGT00510000046975.b #17	ENSGT00940000159036 #26	ENSGT00940000157380 #27	ENSGT00390000004199 #28	ENSGT00940000157774	ENSGT00390000012596	ENSGT00940000164178.fb	ENSGT00940000164178.gb	ENSGT00950000182827.C	ENSGT00940000157395	ENSGT00390000006932	ENSGT00390000003182	ENSGT00940000158998	ENSGT00940000156750	ENSGT00530000063404.b
Frog	MODERN SPECIES	4	faslg (ENSXETG00000041356)	suco (ENSXETG00000000531)	pigc (ENSXETG00000040951)	dnm3 (ENSXETG00000000538)	mettl13 (ENSXETG00000010438)	itpa (ENSXETG00000036089)	vamp4 (ENSXETG00000010444)	myoc (ENSXETG00000038908)	prrc2c (ENSXETG00000010448)	fmo1 (ENSXETG00000025141)	fmo3 (ENSXETG00000025142)	fmo2 (ENSXETG00000010456)	MGC89174 (ENSXETG00000010457)	ENSXETG00000025145	ENSXETG00000033174	uap1 (ENSXETG00000010459) #22	nos1ap (ENSXETG00000010460) #17	rgs4 (ENSXETG00000010461) #26	rgs5 (ENSXETG00000042048) #27	nuf2 (ENSXETG00000010463) #28	pbx1 (ENSXETG00000010464)	lmx1a (ENSXETG00000013183)	agl (ENSXETG00000013185)	ENSXETG00000041829	ENSXETG00000042726	ENSXETG00000013197	slc35a3.1 (ENSXETG00000047097)	mfsd14a (ENSXETG00000013200)	sass6.2 (ENSXETG00000013202)	trmt13 (ENSXETG00000013204)	lrrc39 (ENSXETG00000013208)
Leishan spiny toad	MODERN SPECIES	11	VAMP4 (ENSLLEG00000014901)	MYOC (ENSLLEG00000014968)	ENSLLEG00000015242	ENSLLEG00000015406	ENSLLEG00000015526	ENSLLEG00000015678	ENSLLEG00000015734	ENSLLEG00000015754	ENSLLEG00000015865	FMO3 (ENSLLEG00000015978)	ENSLLEG00000016120	ENSLLEG00000016231	ENSLLEG00000016553	ENSLLEG00000016645	ENSLLEG00000016826	UAP1 (ENSLLEG00000017087) #22	ENSLLEG00000017449 #17	ENSLLEG00000017639	RGS4 (ENSLLEG00000017672) #26	RGS5 (ENSLLEG00000017729) #27	NUF2 (ENSLLEG00000017847) #28	PBX1 (ENSLLEG00000017987) #31	ENSLLEG00000018211	LMX1A (ENSLLEG00000018232)	ENSLLEG00000018418	AGL (ENSLLEG00000018588)	ENSLLEG00000021945	ENSLLEG00000022008	ENSLLEG00000022049	ENSLLEG00000022322	ENSLLEG00000022452
Coelacanth	MODERN SPECIES	444										RGS5 (ENSLACG00000016938) #27	RGS4 (ENSLACG00000016802) #26	ENSLACG00000016664	ENSLACG00000014624 #17	ENSLACG00000014402	UHMK1 (ENSLACG00000014100) #21	UAP1 (ENSLACG00000013441) #22	DDR2 (ENSLACG00000012156) #23	HSD17B7 (ENSLACG00000011905) #24	LRRC52 (ENSLACG00000010752)	MGST3 (ENSLACG00000010314)	ALDH9A1 (ENSLACG00000009933)	TMCO1 (ENSLACG00000009112)	ENSLACG00000008608	UCK2 (ENSLACG00000006312)	ENSLACG00000005704
Actinopterygii	ANCESTRAL SPECIES	8	ENSGT00940000157937	ENSGT00940000158520	ENSGT00940000157316	ENSGT00940000166298	ENSGT00940000161004	ENSGT00940000156099	ENSGT00940000165058	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00510000046975.b #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755
Neopterygii	ANCESTRAL SPECIES	8	ENSGT00940000157937.b	ENSGT00940000158520	ENSGT00940000157316	ENSGT00940000166298	ENSGT00940000161004	ENSGT00940000156099	ENSGT00940000165058	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00510000046975.b #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b #23	ENSGT00390000013340 #24	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00940000155665	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00390000018600	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755
Osteoglossocephalai	ANCESTRAL SPECIES	9	ENSGT00390000011987	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a	ENSGT00940000155603.B	ENSGT00940000158520.f	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00510000046975.b #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00520000055591.a.a	ENSGT00940000159829.c.a	ENSGT00940000159829.d	ENSGT00940000155665.b	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000174981	ENSGT00940000156301.a.a	ENSGT00940000155190	ENSGT00390000018600	ENSGT00730000111209	ENSGT00390000006503.a	ENSGT00940000158755
Clupeocephala	ANCESTRAL SPECIES	148	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000159428.e.a	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00510000046975.b #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00520000055591.a.a	ENSGT00940000159829.c.a
Otomorpha	ANCESTRAL SPECIES	170		ENSGT00550000074851	ENSGT00940000159619.a	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00510000046975.b #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00520000055591.a.a	ENSGT00940000159829.c.a	ENSGT00390000013340 #24	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00940000155665.a	ENSGT01030000234573.A.b.a.d	ENSGT00940000154819.a.a.a	ENSGT00940000156282.a.b	ENSGT00390000006224	ENSGT00390000003015.c	ENSGT00940000166725	ENSGT01030000234931	ENSGT00510000048988
Clupeiformes	ANCESTRAL SPECIES	13	ENSGT01030000234573.A.b.a.d	ENSGT00940000155665.a	ENSGT00550000074851	ENSGT00940000159619.a	ENSGT00940000162953	ENSGT00940000159678	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00510000046975.b #17	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340 #24	ENSGT00520000055591.a.a	ENSGT00940000159829.c.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00940000155941.A	ENSGT00390000018718	ENSGT01030000234931	ENSGT00940000157693	ENSGT00940000166530	ENSGT00530000063498.B	ENSGT00730000111085.A
Atlantic herring	MODERN SPECIES	1	slc35d1a (ENSCHAG00000027162)	opa1 (ENSCHAG00000025933)	her6 (ENSCHAG00000025730)	ENSCHAG00000025729	ENSCHAG00000025728	lrrc15 (ENSCHAG00000025724)	brinp3a.2 (ENSCHAG00000025720)	brinp3a.1 (ENSCHAG00000025711)	ENSCHAG00000025684	rgs8 (ENSCHAG00000025677)	rgs16 (ENSCHAG00000025671)	rgs5a (ENSCHAG00000025664) #27	rgs4 (ENSCHAG00000025663) #26	NOS1AP (ENSCHAG00000025661) #17	uhmk1 (ENSCHAG00000025659) #21	uap1 (ENSCHAG00000025630) #22	DDR2 (ENSCHAG00000025439) #23	hsd17b7 (ENSCHAG00000025416) #24	serbp1a (ENSCHAG00000025376)	il12rb2 (ENSCHAG00000025366)	ENSCHAG00000025347	ATP13A3 (ENSCHAG00000024418)	tmem44 (ENSCHAG00000024350)	ENSCHAG00000024342	tie1 (ENSCHAG00000024160)	mpl (ENSCHAG00000024138)	ENSCHAG00000024135	orc1 (ENSCHAG00000024107)	prpf38a (ENSCHAG00000024091)	dda1 (ENSCHAG00000024078)	acap2b (ENSCHAG00000021837)
Denticle herring	MODERN SPECIES	4	mier1a (ENSDCDG00000018890)	slc35d1a (ENSDCDG00000018949)	opa1 (ENSDCDG00000019102)	her6 (ENSDCDG00000020542)	ENSDCDG00000020544	lrrc15 (ENSDCDG00000020545)	brinp3a.2 (ENSDCDG00000020549)	brinp3a.1 (ENSDCDG00000020554)	ENSDCDG00000020559	rgs8 (ENSDCDG00000020560)	rgs16 (ENSDCDG00000020564)	rgs5a (ENSDCDG00000020566) #27	rgs4 (ENSDCDG00000020570) #26	NOS1AP (ENSDCDG00000020575) #17	uhmk1 (ENSDCDG00000020582) #21	uap1 (ENSDCDG00000020591) #22	DDR2 (ENSDCDG00000020647) #23	hsd17b7 (ENSDCDG00000020750) #24	serbp1a (ENSDCDG00000020756)	ENSDCDG00000020758	ENSDCDG00000020759	ATP13A3 (ENSDCDG00000020765)	ENSDCDG00000020804	tie1 (ENSDCDG00000020825)	mpl (ENSDCDG00000022428)	prpf38a (ENSDCDG00000022433)	ABHD8 (ENSDCDG00000022436)	zgc:85936 (ENSDCDG00000022444)	lmnb2 (ENSDCDG00000022485)	rpl36 (ENSDCDG00000022659)	LONP1 (ENSDCDG00000022685)
Otophysi	ANCESTRAL SPECIES	6	ENSGT00940000155530	ENSGT01030000234818	ENSGT00550000074851	ENSGT00940000159619.a	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00510000046975.b #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340 #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00940000155665.a	ENSGT01030000234573.A.b.a.d	ENSGT00940000154819.a.a.a.a	ENSGT00940000156282.a.b	ENSGT00390000006224	ENSGT00390000003015.c	ENSGT00940000166725	ENSGT01030000234931	ENSGT00510000048988	ENSGT00940000157693
Characiphysae	ANCESTRAL SPECIES	2	ENSGT00940000155530	ENSGT01030000234818	ENSGT00550000074851	ENSGT00940000159619.a	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00510000046975.b #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340 #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00940000155665.a	ENSGT01030000234573.A.b.a.d	ENSGT00940000154819.a.a.a.a	ENSGT00940000156282.a.b	ENSGT00390000006224	ENSGT00390000003015.c	ENSGT00940000166725	ENSGT01030000234931	ENSGT00940000157693	ENSGT00940000166530
Channel catfish	MODERN SPECIES	2	pcdh9 (ENSIPUG00000004861)	rtn4a (ENSIPUG00000004878)	ENSIPUG00000004884	ENSIPUG00000004889	ENSIPUG00000004893	brinp3a.2 (ENSIPUG00000004906)	ENSIPUG00000004913	brinp3a.1 (ENSIPUG00000004922)	rgs8 (ENSIPUG00000004966)	rgs16 (ENSIPUG00000004972)	rgs5a (ENSIPUG00000004987) #27	rgs4 (ENSIPUG00000005008) #26	NOS1AP (ENSIPUG00000005042) #17	ENSIPUG00000005089	uhmk1 (ENSIPUG00000005095) #21	uap1 (ENSIPUG00000005127) #22	ddr2 (ENSIPUG00000005192) #23	hsd17b7 (ENSIPUG00000005239) #24	serbp1a (ENSIPUG00000005252)	il12rb2 (ENSIPUG00000005273)	ENSIPUG00000005294	il23r (ENSIPUG00000005299)	slc35d1a (ENSIPUG00000005319)	mier1a (ENSIPUG00000005357)	lrp8 (ENSIPUG00000005394)	dmrt2b (ENSIPUG00000005442)	fam183a (ENSIPUG00000005457)	Tmem125 (ENSIPUG00000005492)	ap1m3 (ENSIPUG00000005505)	si:ch73-185c24.2 (ENSIPUG00000005615)	tie1 (ENSIPUG00000005642)
Characiphysae_b	ANCESTRAL SPECIES		ENSGT00940000155530	ENSGT01030000234818	ENSGT00550000074851	ENSGT00940000159619.a	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00510000046975.b #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340 #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00940000155665.a	ENSGT01030000234573.A.b.a.d	ENSGT00940000154819.a.a.a.a	ENSGT00940000156282.a.b	ENSGT00390000006224	ENSGT00390000003015.c	ENSGT00940000166725	ENSGT01030000234931	ENSGT00940000157693	ENSGT00940000166530
Characoidei	ANCESTRAL SPECIES		ENSGT00390000018525.a.b.e.b	ENSGT00940000155530	ENSGT00530000067036.a	ENSGT00550000074851	ENSGT00940000159619.a	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00510000046975.b #17	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340 #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00940000155665.a	ENSGT01030000234573.A.b.a.d	ENSGT00940000154819.a.a.a.a	ENSGT00940000156282.a.b	ENSGT00390000006224	ENSGT00390000003015.c	ENSGT00940000166725	ENSGT00940000173535	ENSGT00940000157693	ENSGT00940000166530
Red-bellied piranha	MODERN SPECIES	9	tmem45a (ENSPNAG00000011800)	ENSPNAG00000006993	opa1 (ENSPNAG00000001917)	her6 (ENSPNAG00000011552)	ENSPNAG00000011516	ENSPNAG00000001769	ENSPNAG00000011472	brinp3a.2 (ENSPNAG00000011469)	brinp3a.1 (ENSPNAG00000011442)	rgs8 (ENSPNAG00000011427)	rgs16 (ENSPNAG00000011410)	rgs5a (ENSPNAG00000001715) #27	rgs4 (ENSPNAG00000001699) #26	NOS1AP (ENSPNAG00000011354) #17	uhmk1 (ENSPNAG00000011288) #21	uap1 (ENSPNAG00000001637) #22	DDR2 (ENSPNAG00000001610) #23	hsd17b7 (ENSPNAG00000011164) #24	serbp1a (ENSPNAG00000011149)	il12rb2 (ENSPNAG00000011135)	il23r (ENSPNAG00000001552)	slc35d1a (ENSPNAG00000001523)	mier1a (ENSPNAG00000011050)	lrp8 (ENSPNAG00000010993)	dmrt2b (ENSPNAG00000010744)	cfap144 (ENSPNAG00000010724)	TMEM125 (ENSPNAG00000010710)	ap1m3 (ENSPNAG00000001432)	si:ch73-185c24.2 (ENSPNAG00000010668)	tie1 (ENSPNAG00000010620)	mpl (ENSPNAG00000010486)
Mexicana tetra	MODERN SPECIES	4	tmem45a (ENSAMXG00000012328)	ENSAMXG00000012312	opa1 (ENSAMXG00000012295)	her6 (ENSAMXG00000012278)	ENSAMXG00000037602	ENSAMXG00000038444	ENSAMXG00000042939	brinp3a.2 (ENSAMXG00000032760)	brinp3a.1 (ENSAMXG00000031426)	rgs8 (ENSAMXG00000032897)	rgs16 (ENSAMXG00000041945)	rgs5a (ENSAMXG00000011564) #27	rgs4 (ENSAMXG00000035622) #26	NOS1AP (ENSAMXG00000011523) #17	uhmk1 (ENSAMXG00000037781) #21	uap1 (ENSAMXG00000011503) #22	DDR2 (ENSAMXG00000011496) #23	hsd17b7 (ENSAMXG00000029262) #24	serbp1a (ENSAMXG00000011483)	il12rb2 (ENSAMXG00000011476)	il23r (ENSAMXG00000029026)	slc35d1a (ENSAMXG00000042217)	mier1a (ENSAMXG00000011460)	lrp8 (ENSAMXG00000011425)	dmrt2b (ENSAMXG00000011403)	ENSAMXG00000034783	TMEM125 (ENSAMXG00000025440)	ap1m3 (ENSAMXG00000011372)	si:ch73-185c24.2 (ENSAMXG00000033984)	tie1 (ENSAMXG00000011333)	mpl (ENSAMXG00000011307)
Electric eel	MODERN SPECIES	31	tmem45a (ENSEEEG00000005344)	ENSEEEG00000005345	opa1 (ENSEEEG00000005403)	her6 (ENSEEEG00000007061)	ENSEEEG00000007066	GP5 (ENSEEEG00000007069)	brinp3a.2 (ENSEEEG00000007070)	brinp3a.1 (ENSEEEG00000007072)	rgs8 (ENSEEEG00000007073)	rgs16 (ENSEEEG00000007075)	rgs5a (ENSEEEG00000007076) #27	rgs4 (ENSEEEG00000007080) #26	NOS1AP (ENSEEEG00000007081) #17	ENSEEEG00000007084	uhmk1 (ENSEEEG00000007085) #21	uap1 (ENSEEEG00000007090) #22	DDR2 (ENSEEEG00000007093) #23	hsd17b7 (ENSEEEG00000007099) #24	serbp1a (ENSEEEG00000007102)	il12rb2 (ENSEEEG00000007104)	ENSEEEG00000007106	slc35d1a (ENSEEEG00000007111)	mier1a (ENSEEEG00000007118)	lrp8 (ENSEEEG00000007145)	ENSEEEG00000007591	dmrt2b (ENSEEEG00000007592)	cfap144 (ENSEEEG00000007599)	TMEM125 (ENSEEEG00000007601)	ap1m3 (ENSEEEG00000007627)	ENSEEEG00000008580	tie1 (ENSEEEG00000008596)
Cyprinoidei	ANCESTRAL SPECIES	2	ENSGT01030000234818	ENSGT00550000074851	ENSGT00940000159619.a	ENSGT00940000162953	ENSGT00940000164427.a.b	ENSGT00950000182844.b.b.b.a.a.j	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00510000046975.b #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340 #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a.a	ENSGT00940000159829.d	ENSGT00940000155665.a	ENSGT01030000234573.A.b.a.d	ENSGT00940000154819.a.a.a.a	ENSGT00940000156282.a.b	ENSGT00390000006224	ENSGT00390000003015.c	ENSGT00940000166725	ENSGT01030000234931	ENSGT00510000048988	ENSGT00940000157693
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	12	ENSGT01030000234818.b	ENSGT00550000074851.b	ENSGT00940000159619.a.g	ENSGT00940000162953.u.b	ENSGT00940000164427.a.b	ENSGT00940000162953.u.a	ENSGT00950000182844.b.b.b.a.a.j.b	ENSGT00940000156099.c	ENSGT00940000165058.a.a	ENSGT00940000154304.C.d.a	ENSGT00940000164081.b.a	ENSGT00940000157380.a #27	ENSGT00940000159036.d #26	ENSGT00510000046975.b.i.a #17	ENSGT00940000157769.k.b #21	ENSGT00940000153464.A.b.m #22	ENSGT00940000154842.a.b.e.a #23	ENSGT00390000013340.b #24	ENSGT00520000055591.a.a.a	ENSGT00940000155776.a.a.b	ENSGT00940000159829.d.b	ENSGT00940000155665.a.a	ENSGT01030000234573.A.b.a.d.b	ENSGT00940000154819.a.a.a.a.b	ENSGT00940000156282.a.b.d	ENSGT00390000006224	ENSGT00390000003015.c.b	ENSGT00940000166725.a	ENSGT00510000048988	ENSGT00940000157693.m	ENSGT00940000166530.b
Goldfish	MODERN SPECIES	46	tmem45a (ENSCARG00000040162)	ENSCARG00000040150	opa1 (ENSCARG00000031305)	her6 (ENSCARG00000031026)	ENSCARG00000031013	ENSCARG00000031009	rhcgl1 (ENSCARG00000029900)	brinp3a.2 (ENSCARG00000029857)	brinp3a.1 (ENSCARG00000029850)	rgs8 (ENSCARG00000029837)	rgs16 (ENSCARG00000029822)	rgs5a (ENSCARG00000029812) #27	rgs4 (ENSCARG00000029804) #26	ENSCARG00000029747 #17	uhmk1 (ENSCARG00000029706) #21	uap1 (ENSCARG00000029631) #22	DDR2 (ENSCARG00000029459) #23	hsd17b7 (ENSCARG00000029415) #24	serbp1a (ENSCARG00000029384)	il12rb2 (ENSCARG00000029321)	il23r (ENSCARG00000029297)	slc35d1a (ENSCARG00000028855)	mier1a (ENSCARG00000028770)	lrp8 (ENSCARG00000028366)	dmrt2b (ENSCARG00000028285)	cfap144 (ENSCARG00000028276)	TMEM125 (ENSCARG00000028268)	ap1m3 (ENSCARG00000028067)	ENSCARG00000028021	tie1 (ENSCARG00000026648)	mpl (ENSCARG00000026515)
Cyprininae_a	ANCESTRAL SPECIES	23	ENSGT01030000234818.b	ENSGT00550000074851.b	ENSGT00940000159619.a.g	ENSGT00940000162953.u.b	ENSGT00940000164427.a.b.g	ENSGT00950000182844.b.b.b.a.a.j.b	ENSGT00940000156099.c	ENSGT00940000165058.a.a.a	ENSGT00940000154304.C.d.a	ENSGT00940000164081.b.a	ENSGT00940000157380.a #27	ENSGT00940000159036.d #26	ENSGT00510000046975.b.i.a #17	ENSGT00940000164616	ENSGT00940000157769.k.b #21	ENSGT00940000153464.A.b.m #22	ENSGT00940000154842.a.b.e.a #23	ENSGT00390000013340.a #24	ENSGT00520000055591.a.a.a	ENSGT00940000155776.a.a.b	ENSGT00940000159829.d.b	ENSGT00940000155665.a.a	ENSGT01030000234573.A.b.a.d.b	ENSGT00940000154819.a.a.a.a.b	ENSGT00940000156282.a.b.d	ENSGT00390000006224	ENSGT00390000003015.c.b	ENSGT00940000166725.a	ENSGT00510000048988	ENSGT00940000157693.m	ENSGT00940000166530.b
Golden-line barbel	MODERN SPECIES	411									rgs8 (ENSSGRG00000055553)	rgs16 (ENSSGRG00000055554)	rgs5a (ENSSGRG00000055555) #27	rgs4 (ENSSGRG00000055556) #26	ENSSGRG00000055557 #17	ENSSGRG00000055558	uhmk1 (ENSSGRG00000055559) #21	uap1 (ENSSGRG00000055560) #22	DDR2 (ENSSGRG00000055561) #23	hsd17b7 (ENSSGRG00000055562) #24	serbp1a (ENSSGRG00000055563)	il12rb2 (ENSSGRG00000055564)	il23r (ENSSGRG00000055565)	slc35d1a (ENSSGRG00000055567)	mier1a (ENSSGRG00000055568)	lrp8 (ENSSGRG00000055569)	dmrt2b (ENSSGRG00000055570)	cfap144 (ENSSGRG00000055571)	TMEM125 (ENSSGRG00000055573)	ap1m3 (ENSSGRG00000055575)	ENSSGRG00000001189	tie1 (ENSSGRG00000001199)	ENSSGRG00000001212
Common carp reference	MODERN SPECIES	10	opa1 (ENSCCRG00000008910)	her6 (ENSCCRG00000080154)	ENSCCRG00000061531	ENSCCRG00000064817	ENSCCRG00000065404	ENSCCRG00000040696	rhcgl1 (ENSCCRG00000029442)	brinp3a.2 (ENSCCRG00000073021)	brinp3a.1 (ENSCCRG00000055845)	rgs8 (ENSCCRG00000052590)	rgs16 (ENSCCRG00000029441)	rgs5a (ENSCCRG00000029440) #27	rgs4 (ENSCCRG00000073562) #26	ENSCCRG00000081313 #17	uhmk1 (ENSCCRG00000005528) #21	uap1 (ENSCCRG00000005491) #22	ENSCCRG00000005018 #23	hsd17b7 (ENSCCRG00000004923) #24	serbp1a (ENSCCRG00000004304)	il12rb2 (ENSCCRG00000000486)	il23r (ENSCCRG00000019996)	slc35d1a (ENSCCRG00000002577)	mier1a (ENSCCRG00000020147)	lrp8 (ENSCCRG00000028714)	dmrt2b (ENSCCRG00000007718)	cfap144 (ENSCCRG00000000800)	TMEM125 (ENSCCRG00000073017)	ap1m3 (ENSCCRG00000031744)	C1orf210 (ENSCCRG00000007924)	ENSCCRG00000003678	tie1 (ENSCCRG00000038381)
Cyprininae	ANCESTRAL SPECIES	131	ENSGT00940000159402.h	ENSGT00390000018525.a.b.e.b	ENSGT00940000155530.b	ENSGT01030000234818.a	ENSGT00550000074851.a	ENSGT00940000159619.a.h	ENSGT00950000182844.b.b.b.a.a.j.a	ENSGT00940000156099.d	ENSGT00940000165058.a.b	ENSGT00940000154304.C.d.b	ENSGT00940000164081.b.b	ENSGT00940000157380.b #27	ENSGT00940000159036.c #26	ENSGT00510000046975.b.i.b #17	ENSGT00940000157769.k.a #21	ENSGT00940000153464.A.b.n #22	ENSGT00940000154842.a.b.e.b #23	ENSGT00390000013340.a #24	ENSGT00520000055591.a.a.b	ENSGT00940000155776.a.a.a	ENSGT00940000159829.d.a	ENSGT00940000155665.a.b	ENSGT01030000234573.A.b.a.d.a	ENSGT00940000154819.a.a.a.a.a	ENSGT00940000156282.a.b.c	ENSGT00390000003015.c.a	ENSGT00940000166725.b	ENSGT01030000234931	ENSGT00940000157693.n	ENSGT00940000166530.a	ENSGT00530000063498.B.b
Goldfish	MODERN SPECIES	24	trnt1 (ENSCARG00000011606)	arl6ip5a (ENSCARG00000011622)	FRMD4B (ENSCARG00000011641)	mitfa (ENSCARG00000011744)	zgc:113054 (ENSCARG00000011990)	MDFIC2 (ENSCARG00000012024)	foxp1b (ENSCARG00000012040)	brinp3a.1 (ENSCARG00000012218)	rgs8 (ENSCARG00000012226)	rgs16 (ENSCARG00000012232)	rgs5a (ENSCARG00000012235) #27	rgs4 (ENSCARG00000012238) #26	ENSCARG00000012255 #17	ENSCARG00000012440	uhmk1 (ENSCARG00000012456) #21	uap1 (ENSCARG00000012495) #22	DDR2 (ENSCARG00000012545) #23	hsd17b7 (ENSCARG00000013060) #24	serbp1a (ENSCARG00000013066)	il12rb2 (ENSCARG00000013084)	il23r (ENSCARG00000013103)	slc35d1a (ENSCARG00000013129)	mier1a (ENSCARG00000013232)	lrp8 (ENSCARG00000013336)	dmrt2b (ENSCARG00000013496)	TMEM125 (ENSCARG00000013510)	ap1m3 (ENSCARG00000013524)	ENSCARG00000013619	tie1 (ENSCARG00000013636)	mpl (ENSCARG00000013760)	orc1 (ENSCARG00000013841)
Cyprininae_a	ANCESTRAL SPECIES	10	ENSGT00940000155530.b	ENSGT01030000234818.a	ENSGT00550000074851.a	ENSGT00940000159619.a.h	ENSGT00940000162953.u.a	ENSGT00940000164427.a.b.h	ENSGT00950000182844.b.b.b.a.a.j.a	ENSGT00940000156099.d	ENSGT00940000165058.a.b	ENSGT00940000154304.C.d.b	ENSGT00940000164081.b.b	ENSGT00940000157380.b #27	ENSGT00940000159036.c #26	ENSGT00510000046975.b.i.b #17	ENSGT00940000157769.k.a #21	ENSGT00940000153464.A.b.n #22	ENSGT00940000154842.a.b.e.b #23	ENSGT00390000013340.b #24	ENSGT00520000055591.a.a.b	ENSGT00940000155776.a.a.a	ENSGT00940000159829.d.a	ENSGT00940000155665.a.b	ENSGT01030000234573.A.b.a.d.a	ENSGT00940000154819.a.a.a.a.a	ENSGT00940000156282.a.b.c	ENSGT00390000003015.c.a	ENSGT00940000166725.b	ENSGT01030000234931	ENSGT00940000157693.n	ENSGT00940000166530.a	ENSGT00530000063498.B.b
Common carp reference	MODERN SPECIES	16	ENSCCRG00000077764	ENSCCRG00000004681	ENSCCRG00000074428	rhcgl1 (ENSCCRG00000040745)	ENSCCRG00000071493	brinp3a.2 (ENSCCRG00000028787)	ENSCCRG00000073142	ENSCCRG00000079990	brinp3a.1 (ENSCCRG00000062300)	rgs8 (ENSCCRG00000029443)	rgs16 (ENSCCRG00000071629)	rgs5a (ENSCCRG00000052230) #27	rgs4 (ENSCCRG00000080224) #26	ENSCCRG00000063400 #17	uhmk1 (ENSCCRG00000002063) #21	uap1 (ENSCCRG00000002084) #22	ENSCCRG00000002121 #23	hsd17b7 (ENSCCRG00000002493) #24	il12rb2 (ENSCCRG00000019993)	il23r (ENSCCRG00000053925)	slc35d1a (ENSCCRG00000070591)	mier1a (ENSCCRG00000004289)	lrp8 (ENSCCRG00000015375)	dmrt2b (ENSCCRG00000016515)	TMEM125 (ENSCCRG00000059531)	ap1m3 (ENSCCRG00000013767)	tie1 (ENSCCRG00000003766)	mpl (ENSCCRG00000003733)	orc1 (ENSCCRG00000031441)	prpf38a (ENSCCRG00000003656)	akr1a1b (ENSCCRG00000060658)
Golden-line barbel	MODERN SPECIES	186													ENSSGRG00000023010 #17	ENSSGRG00000023012 #17	uhmk1 (ENSSGRG00000023013) #21	uap1 (ENSSGRG00000023021) #22	DDR2 (ENSSGRG00000023088) #23	serbp1a (ENSSGRG00000023110)	il12rb2 (ENSSGRG00000023111)	il23r (ENSSGRG00000023112)	slc35d1a (ENSSGRG00000023118)	mier1a (ENSSGRG00000023169)	lrp8 (ENSSGRG00000023199)	dmrt2b (ENSSGRG00000023245)	cfap144 (ENSSGRG00000023246)	ENSSGRG00000023247	TMEM125 (ENSSGRG00000023248)	ap1m3 (ENSSGRG00000023250)	ENSSGRG00000023251	tie1 (ENSSGRG00000023283)	mpl (ENSSGRG00000023664)
Zebrafish	MODERN SPECIES	21	tmem45a (ENSDARG00000070743)	ENSDARG00000100255	opa1 (ENSDARG00000070801)	her6 (ENSDARG00000006514)	lrrc15 (ENSDARG00000070792)	rhcgl1 (ENSDARG00000007080)	brinp3a.2 (ENSDARG00000061051)	brinp3a.1 (ENSDARG00000076351)	rgs8 (ENSDARG00000070037)	rgs16 (ENSDARG00000040177)	rgs5a (ENSDARG00000002644) #27	rgs4 (ENSDARG00000070047) #26	NOS1AP (ENSDARG00000105071) #17	ENSDARG00000078725	uhmk1 (ENSDARG00000059575) #21	uap1 (ENSDARG00000052170) #22	DDR2 (ENSDARG00000100693) #23	hsd17b7 (ENSDARG00000088140) #24	serbp1a (ENSDARG00000074242)	il12rb2 (ENSDARG00000052157)	il23r (ENSDARG00000052158)	slc35d1a (ENSDARG00000011973)	mier1a (ENSDARG00000041072)	lrp8 (ENSDARG00000070074)	dmrt2b (ENSDARG00000070013)	cfap144 (ENSDARG00000087144)	ap1m3 (ENSDARG00000039512)	si:ch73-185c24.2 (ENSDARG00000096908)	tie1 (ENSDARG00000004105)	mpl (ENSDARG00000039222)	orc1 (ENSDARG00000039217)
Euteleosteomorpha	ANCESTRAL SPECIES	75	ENSGT00940000157937.b	ENSGT00940000158520.e.b	ENSGT00940000157316.f	ENSGT00940000158520.f	ENSGT00940000157316.e.b	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00510000046975.b #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00990000205848	ENSGT00950000182879.a.b.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01100000263662	ENSGT00740000116213
Acanthomorphata	ANCESTRAL SPECIES	11	ENSGT00940000156012	ENSGT00940000155854.b.a.a	ENSGT00940000156165	ENSGT00940000166091	ENSGT00950000182920.b.a.a	ENSGT00940000159170.c	ENSGT00940000164939.a.a	ENSGT00940000154737.c.h	ENSGT00940000160191	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01100000263662	ENSGT01070000253866
Cod	MODERN SPECIES	3	ENSGMOG00000025809	rgl1 (ENSGMOG00000023024)	ENSGMOG00000027064	ENSGMOG00000016644	plin3 (ENSGMOG00000016686)	rorca (ENSGMOG00000000779)	SH3GL1 (ENSGMOG00000000764)	mpnd (ENSGMOG00000000741)	stap2b (ENSGMOG00000031573)	fsd1 (ENSGMOG00000012688)	si:ch211-129c21.1 (ENSGMOG00000006845)	ENSGMOG00000035805	scamp4 (ENSGMOG00000015365)	chaf1a (ENSGMOG00000015371)	ubxn6 (ENSGMOG00000015399)	uap1 (ENSGMOG00000015423) #22	ENSGMOG00000015439 #23	hsd17b7 (ENSGMOG00000000160) #24	serbp1a (ENSGMOG00000015470)	lrp8 (ENSGMOG00000002561)	cfap144 (ENSGMOG00000031988)	EBNA1BP2 (ENSGMOG00000004150)	TMEM125 (ENSGMOG00000030092)	ap1m3 (ENSGMOG00000004130)	ENSGMOG00000009824	ENSGMOG00000004733	ENSGMOG00000004711	ENSGMOG00000031193	ENSGMOG00000008773	ENSGMOG00000023155	ENSGMOG00000008740
Euacanthomorphacea	ANCESTRAL SPECIES	9	ENSGT01030000234558.C.p	ENSGT00940000156012	ENSGT00940000155854.b.a.a	ENSGT00940000166091	ENSGT00950000182920.b.a.a	ENSGT00940000159170.c	ENSGT00940000164939.a.a	ENSGT00940000154737.c.h	ENSGT00940000160191	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00990000205848	ENSGT00950000182879.a.b.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01100000263662
Pinecone sodierfish	MODERN SPECIES	18	colgalt2b (ENSMMDG00005007155)	rgl1 (ENSMMDG00005007172)	ENSMMDG00005007277	ABHD17A (ENSMMDG00005007280)	zgc:77486 (ENSMMDG00005007311)	plin3 (ENSMMDG00005007315)	SEMA6B (ENSMMDG00005007331)	rorca (ENSMMDG00005007343)	sh3gl1b (ENSMMDG00005007345)	mpnd (ENSMMDG00005007413)	stap2b (ENSMMDG00005007531)	fsd1 (ENSMMDG00005007561)	si:ch211-129c21.1 (ENSMMDG00005008002)	scamp4 (ENSMMDG00005008009)	ubxn6 (ENSMMDG00005008016)	uap1 (ENSMMDG00005008036) #22	DDR2 (ENSMMDG00005008427) #23	ENSMMDG00005008432	serbp1a (ENSMMDG00005008434)	il12rb2 (ENSMMDG00005008439)	ENSMMDG00005008448	ENSMMDG00005008457	ENSMMDG00005008464	ENSMMDG00005008504	ENSMMDG00005009242	cyp2n13 (ENSMMDG00005009434)	cyp2n13 (ENSMMDG00005009967)	ENSMMDG00005009992	cyp2n13 (ENSMMDG00005000182)	cyp2n13 (ENSMMDG00005000494)	cyp2n13 (ENSMMDG00005000977)
Percomorphaceae	ANCESTRAL SPECIES	12	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000170739	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000163126.a.b	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00990000205848	ENSGT00950000182879.a.b.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01100000263662
Tiger tail seahorse	MODERN SPECIES	469	tm6sf2b (ENSHCOG00000000879)	SBNO2 (ENSHCOG00000000884)	tjp3 (ENSHCOG00000000890)	ARHGAP45 (ENSHCOG00000000898)	POLR2E (ENSHCOG00000000906)	ENSHCOG00000000907	gpx4b (ENSHCOG00000000909)	PIP5K1C (ENSHCOG00000000914)	ENSHCOG00000000954	marchf2 (ENSHCOG00000000979)	ENSHCOG00000000985	ENSHCOG00000000990	fsd1 (ENSHCOG00000000994)	chaf1a (ENSHCOG00000001004)	ubxn6 (ENSHCOG00000001010)	uap1 (ENSHCOG00000001019) #22	DDR2 (ENSHCOG00000001029) #23	hsd17b7 (ENSHCOG00000000044) #24	serbp1a (ENSHCOG00000001044)	tmem59l (ENSHCOG00000001047)	ENSHCOG00000001053	ssbp4 (ENSHCOG00000001058)	fkbp8 (ENSHCOG00000001065)	ell (ENSHCOG00000001070)	DOT1L (ENSHCOG00000001086)	amh (ENSHCOG00000001199)	oaz1a (ENSHCOG00000001278)	org (ENSHCOG00000001285)	lingo3a (ENSHCOG00000001286)	ENSHCOG00000000737	ENSHCOG00000001314
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00940000165680.A	ENSGT00940000170739	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000163126.a.b.h	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.b.a	ENSGT00990000205848	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b.b	ENSGT00950000182879.a.b.b.b.a	ENSGT00990000205848	ENSGT00950000182879.a.b.b.a.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b.b	ENSGT00950000182879.a.b.b.b.a	ENSGT00990000205848	ENSGT00950000182879.a.b.b.a.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600
Pomacentridae	ANCESTRAL SPECIES	14	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b.a.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b.f	ENSGT00990000205848	ENSGT00950000182879.a.b.b.a.b.a.a.a.a	ENSGT00950000182879.a.b.a.a.b.a.g.b.k	ENSGT00950000182879.a.b.a.a.b.b.b.b.e	ENSGT00950000182879.a.b.a.a.b.a.g.b.l	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b.a.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b.f	ENSGT00990000205848	ENSGT00950000182879.a.b.b.a.b.a.a.a.a	ENSGT00950000182879.a.b.a.a.b.a.g.b.k	ENSGT00950000182879.a.b.a.a.b.b.b.b.e	ENSGT00950000182879.a.b.a.a.b.a.g.b.l	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a
Amphiprion	ANCESTRAL SPECIES	2	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b.a.a.b	ENSGT00990000205848	ENSGT00950000182879.a.b.b.a.b.a.a.a.a.b	ENSGT00950000182879.a.b.b.a.b.a.b.a.a	ENSGT00940000179890.a	ENSGT00950000182879.a.b.b.a.b.a.b.b.b	ENSGT00950000182879.a.b.b.a.b.a.b.b.a	ENSGT00950000182879.a.b.b.a.b.a.a.a.b	ENSGT00950000182879.a.b.b.a.b.a.a.a.a.a.a	ENSGT00950000182879.a.b.b.a.b.a.a.a.a.a.b
Orange clownfish	MODERN SPECIES	11	tjp3 (ENSAPEG00000008924)	ARHGAP45 (ENSAPEG00000008981)	POLR2E (ENSAPEG00000009000)	ENSAPEG00000009041	PIP5K1C (ENSAPEG00000009071)	rab11ba (ENSAPEG00000009177)	marchf2 (ENSAPEG00000009205)	ENSAPEG00000009227	ENSAPEG00000009245	ENSAPEG00000009260	fsd1 (ENSAPEG00000009273)	si:ch211-129c21.1 (ENSAPEG00000009283)	scamp4 (ENSAPEG00000009291)	chaf1a (ENSAPEG00000009323)	ubxn6 (ENSAPEG00000009347)	uap1 (ENSAPEG00000009472) #22	DDR2 (ENSAPEG00000009522) #23	hsd17b7 (ENSAPEG00000009585) #24	serbp1a (ENSAPEG00000009604)	il12rb2 (ENSAPEG00000009692)	ENSAPEG00000009715	ENSAPEG00000009836	ENSAPEG00000009852	ENSAPEG00000009862	ENSAPEG00000009902	ENSAPEG00000009943	ENSAPEG00000009953	ENSAPEG00000009982	ENSAPEG00000010040	cyp2n13 (ENSAPEG00000010865)	cyp2n13 (ENSAPEG00000010876)
Clown anemonefish	MODERN SPECIES	3210									ENSAOCG00000018849	ENSAOCG00000018867	fsd1 (ENSAOCG00000018979)	si:ch211-129c21.1 (ENSAOCG00000019021)	scamp4 (ENSAOCG00000001955)	chaf1a (ENSAOCG00000019078)	ubxn6 (ENSAOCG00000019099)	uap1 (ENSAOCG00000019166) #22
Spiny chromis	MODERN SPECIES	1325									ENSAPOG00000019118	ENSAPOG00000019128	fsd1 (ENSAPOG00000019207)	si:ch211-129c21.1 (ENSAPOG00000019235)	scamp4 (ENSAPOG00000019276)	chaf1a (ENSAPOG00000019292)	ubxn6 (ENSAPOG00000019301)	uap1 (ENSAPOG00000019382) #22	DDR2 (ENSAPOG00000019464) #23	hsd17b7 (ENSAPOG00000019472) #24	serbp1a (ENSAPOG00000001006)	il12rb2 (ENSAPOG00000001101)	ENSAPOG00000019572	ENSAPOG00000019620	ENSAPOG00000019632	ENSAPOG00000019648	ENSAPOG00000019677
Bicolor damselfish	MODERN SPECIES	1474									ENSSPAG00000014559	ENSSPAG00000014542	fsd1 (ENSSPAG00000014443)	si:ch211-129c21.1 (ENSSPAG00000014409)	scamp4 (ENSSPAG00000014378)	chaf1a (ENSSPAG00000014297)	ubxn6 (ENSSPAG00000014276)	uap1 (ENSSPAG00000014217) #22	DDR2 (ENSSPAG00000014147) #23	hsd17b7 (ENSSPAG00000014092) #24	serbp1a (ENSSPAG00000014054)	il12rb2 (ENSSPAG00000014022)	ENSSPAG00000013993	ENSSPAG00000013986
Cichlidae	ANCESTRAL SPECIES	17	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b.b.a.a	ENSGT00950000182879.a.b.b.b.a	ENSGT00990000205848	ENSGT00950000182879.a.b.b.a.b.a.c.a	ENSGT00940000179890.a	ENSGT00950000182879.a.b.b.a.b.a.c.b	ENSGT00950000182879.a.b.b.a.b.b.b	ENSGT00950000182879.a.b.a.a.b.b.b.b.g	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b.b.a.a	ENSGT00950000182879.a.b.b.b.a	ENSGT00990000205848	ENSGT00950000182879.a.b.b.a.b.a.c.a.c.b	ENSGT00950000182879.a.b.b.a.b.b.b.a	ENSGT00950000182879.a.b.b.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.b.b.b.g.a	ENSGT00950000182879.a.b.a.a.b.b.b.b.g.b	ENSGT00950000182879.a.b.a.a.b.b.b.b.h	ENSGT00950000182879.a.b.b.a.b.b.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	26	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b.b.a.a	ENSGT00950000182879.a.b.b.b.a
Haplochromini	ANCESTRAL SPECIES	16	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b.b.a.a	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.b.a.b.a.c.a.c.b	ENSGT00950000182879.a.b.b.a.b.a.c.b.b	ENSGT00950000182879.a.b.b.a.b.a.c.a.c.a.a	ENSGT00950000182879.a.b.b.a.b.a.c.b.a	ENSGT00950000182879.a.b.b.a.b.b.b.a	ENSGT00950000182879.a.b.b.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.b.b.b.g.a	ENSGT00950000182879.a.b.a.a.b.b.b.b.g.b
Burton s mouthbrooder	MODERN SPECIES	853					gpx4a (ENSHBUG00000009822)	PIP5K1C (ENSHBUG00000009866)	rab11ba (ENSHBUG00000009894)	marchf2 (ENSHBUG00000009928)	ENSHBUG00000009947	stap2b (ENSHBUG00000009959)	fsd1 (ENSHBUG00000009969)	si:ch211-129c21.1 (ENSHBUG00000009979)	scamp4 (ENSHBUG00000000931)	chaf1a (ENSHBUG00000010031)	ubxn6 (ENSHBUG00000010046)	uap1 (ENSHBUG00000010126) #22	DDR2 (ENSHBUG00000010237) #23	hsd17b7 (ENSHBUG00000010261) #24	serbp1a (ENSHBUG00000010298)	il12rb2 (ENSHBUG00000010334)	ENSHBUG00000000274	ENSHBUG00000011040	ENSHBUG00000011109	ENSHBUG00000011132	ENSHBUG00000012302	ENSHBUG00000012347	ENSHBUG00000012427
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b.b.a.a	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.b.a.b.a.c.a.c.b	ENSGT00950000182879.a.b.b.a.b.a.c.a.d	ENSGT00950000182879.a.b.b.a.b.a.c.b.b	ENSGT00950000182879.a.b.b.a.b.a.c.a.c.a.a	ENSGT00950000182879.a.b.b.a.b.a.c.b.a	ENSGT00950000182879.a.b.b.a.b.b.a.b.b	ENSGT00950000182879.a.b.b.a.b.b.a.b.a	ENSGT00950000182879.a.b.b.a.b.b.b.a
Haplochromini_B	ANCESTRAL SPECIES	10	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a.e	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b.b.a.a	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.b.a.b.a.c.a.c.b	ENSGT00950000182879.a.b.b.a.b.a.c.a.d	ENSGT00950000182879.a.b.b.a.b.a.c.b.b	ENSGT00950000182879.a.b.b.a.b.a.c.a.c.a.a	ENSGT00950000182879.a.b.b.a.b.a.c.b.a	ENSGT00950000182879.a.b.b.a.b.b.a.b.b	ENSGT00950000182879.a.b.b.a.b.b.a.b.a	ENSGT00950000182879.a.b.b.a.b.b.b.b.b
Zebra mbuna	MODERN SPECIES	1105	SBNO2 (ENSMZEG00005010682)	ENSMZEG00005010715	ARHGAP45 (ENSMZEG00005010755)	POLR2E (ENSMZEG00005010796)	gpx4a (ENSMZEG00005010823)	PIP5K1C (ENSMZEG00005010892)	rab11ba (ENSMZEG00005010947)	marchf2 (ENSMZEG00005010963)	ENSMZEG00005010975	stap2b (ENSMZEG00005010987)	fsd1 (ENSMZEG00005011009)	si:ch211-129c21.1 (ENSMZEG00005011031)	scamp4 (ENSMZEG00005011050)	chaf1a (ENSMZEG00005011071)	ubxn6 (ENSMZEG00005011141)	uap1 (ENSMZEG00005011153) #22	DDR2 (ENSMZEG00005011178) #23	hsd17b7 (ENSMZEG00005011230) #24	serbp1a (ENSMZEG00005011260)	il12rb2 (ENSMZEG00005011617)	ENSMZEG00005011689	ENSMZEG00005011775	ENSMZEG00005016289	ENSMZEG00005016339	ENSMZEG00005016400	ENSMZEG00005016443	ENSMZEG00005017947	ENSMZEG00005018939	ENSMZEG00005018956	ENSMZEG00005018984	ENSMZEG00005018993
Eastern happy	MODERN SPECIES	14	SBNO2 (ENSACLG00000005090)	ENSACLG00000005193	ARHGAP45 (ENSACLG00000005229)	POLR2E (ENSACLG00000005254)	gpx4a (ENSACLG00000005282)	PIP5K1C (ENSACLG00000005378)	rab11ba (ENSACLG00000005420)	marchf2 (ENSACLG00000005438)	ENSACLG00000005446	stap2b (ENSACLG00000005464)	fsd1 (ENSACLG00000005484)	si:ch211-129c21.1 (ENSACLG00000005577)	scamp4 (ENSACLG00000005608)	chaf1a (ENSACLG00000005630)	ubxn6 (ENSACLG00000005647)	uap1 (ENSACLG00000005663) #22	DDR2 (ENSACLG00000005714) #23	hsd17b7 (ENSACLG00000005757) #24	serbp1a (ENSACLG00000005768)	il12rb2 (ENSACLG00000005783)	ENSACLG00000005910	ENSACLG00000005946	ENSACLG00000006607	ENSACLG00000007732	ENSACLG00000007815	ENSACLG00000008118	ENSACLG00000008366	ENSACLG00000009351	ENSACLG00000009504	ENSACLG00000009776	ENSACLG00000009862
P. nyererei	MODERN SPECIES	351	SBNO2 (ENSPNYG00000019926)	tjp3 (ENSPNYG00000019859)	ARHGAP45 (ENSPNYG00000019821)	POLR2E (ENSPNYG00000019797)	ENSPNYG00000019769	PIP5K1C (ENSPNYG00000019686)	rab11ba (ENSPNYG00000019644)	marchf2 (ENSPNYG00000019636)	ENSPNYG00000019611	stap2b (ENSPNYG00000019588)	fsd1 (ENSPNYG00000019516)	si:ch211-129c21.1 (ENSPNYG00000019488)	scamp4 (ENSPNYG00000019469)	chaf1a (ENSPNYG00000019436)	ubxn6 (ENSPNYG00000019420)	uap1 (ENSPNYG00000019385) #22	DDR2 (ENSPNYG00000019333) #23	hsd17b7 (ENSPNYG00000019301) #24	serbp1a (ENSPNYG00000019256)	il12rb2 (ENSPNYG00000019216)	ENSPNYG00000019186	ENSPNYG00000018704	ENSPNYG00000018095	ENSPNYG00000017505	ENSPNYG00000016993	ENSPNYG00000016918	ENSPNYG00000016468	ENSPNYG00000016383	ENSPNYG00000016358	ENSPNYG00000015826	ENSPNYG00000015320
Lyretail cichlid	MODERN SPECIES	584					ENSNBRG00000023910	PIP5K1C (ENSNBRG00000023905)	rab11ba (ENSNBRG00000023898)	marchf2 (ENSNBRG00000023894)	ENSNBRG00000023885	stap2b (ENSNBRG00000023872)	fsd1 (ENSNBRG00000023844)	si:ch211-129c21.1 (ENSNBRG00000023832)	scamp4 (ENSNBRG00000023826)	chaf1a (ENSNBRG00000023818)	ubxn6 (ENSNBRG00000023812)	uap1 (ENSNBRG00000023806) #22	DDR2 (ENSNBRG00000023800) #23	hsd17b7 (ENSNBRG00000023795) #24	serbp1a (ENSNBRG00000023789)	il12rb2 (ENSNBRG00000023770)	ENSNBRG00000023756	ENSNBRG00000023700	ENSNBRG00000023633
Nile tilapia	MODERN SPECIES	14	SBNO2 (ENSONIG00000002490)	tjp3 (ENSONIG00000002505)	ARHGAP45 (ENSONIG00000002512)	POLR2E (ENSONIG00000002519)	ENSONIG00000010276	PIP5K1C (ENSONIG00000002529)	rab11ba (ENSONIG00000028579)	march2 (ENSONIG00000033383)	ENSONIG00000002544	stap2b (ENSONIG00000002548)	fsd1 (ENSONIG00000002556)	si:ch211-129c21.1 (ENSONIG00000002563)	scamp4 (ENSONIG00000002570)	chaf1a (ENSONIG00000002573)	ubxn6 (ENSONIG00000042864)	uap1 (ENSONIG00000002583) #22	DDR2 (ENSONIG00000002591) #23	hsd17b7 (ENSONIG00000002597) #24	serbp1a (ENSONIG00000002600)	il12rb2 (ENSONIG00000002601)	ENSONIG00000042731	ENSONIG00000039651	ENSONIG00000030382	ENSONIG00000035577	ENSONIG00000027758	ENSONIG00000038279	ENSONIG00000034197	ENSONIG00000038345	ENSONIG00000042533	ENSONIG00000034784	ENSONIG00000038678
Midas cichlid	MODERN SPECIES	505	SBNO2 (ENSACIG00000024368)	ENSACIG00000024369	ARHGAP45 (ENSACIG00000024370)	POLR2E (ENSACIG00000024371)	gpx4a (ENSACIG00000024372)	PIP5K1C (ENSACIG00000024373)	rab11ba (ENSACIG00000024374)	marchf2 (ENSACIG00000024375)	ENSACIG00000024376	stap2b (ENSACIG00000024377)	fsd1 (ENSACIG00000024378)	si:ch211-129c21.1 (ENSACIG00000024379)	scamp4 (ENSACIG00000024380)	chaf1a (ENSACIG00000024381)	ubxn6 (ENSACIG00000024382)	uap1 (ENSACIG00000024383) #22	DDR2 (ENSACIG00000024384) #23	hsd17b7 (ENSACIG00000024385) #24	serbp1a (ENSACIG00000024386)	il12rb2 (ENSACIG00000024387)	ENSACIG00000024388	ENSACIG00000024389
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000170739	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b.a	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.b.b	ENSGT00950000182879.a.b.b.b.a.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866
Aplocheiloidei	ANCESTRAL SPECIES	3	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.b.a.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213
Mangrove rivulus	MODERN SPECIES	8	SBNO2 (ENSKMAG00000005541)	tjp3 (ENSKMAG00000005798)	ARHGAP45 (ENSKMAG00000005916)	POLR2E (ENSKMAG00000005954)	PIP5K1C (ENSKMAG00000005999)	rab11ba (ENSKMAG00000006082)	marchf2 (ENSKMAG00000006111)	gpx4a (ENSKMAG00000006135)	ENSKMAG00000006170	ENSKMAG00000006179	fsd1 (ENSKMAG00000006206)	si:ch211-129c21.1 (ENSKMAG00000006271)	scamp4 (ENSKMAG00000006302)	chaf1a (ENSKMAG00000006384)	ubxn6 (ENSKMAG00000006466)	uap1 (ENSKMAG00000006502) #22	DDR2 (ENSKMAG00000006594) #23	hsd17b7 (ENSKMAG00000006671) #24	serbp1a (ENSKMAG00000006722)	ENSKMAG00000006752	il23r (ENSKMAG00000006774)	ENSKMAG00000006796	ENSKMAG00000006851	ENSKMAG00000007035	ENSKMAG00000007096	ENSKMAG00000007142	ENSKMAG00000007176	ENSKMAG00000007411	cyp2n13 (ENSKMAG00000007531)	cyp2n13 (ENSKMAG00000007588)	hook1 (ENSKMAG00000007644)
Turquoise killifish	MODERN SPECIES	1626	tjp3 (ENSNFUG00015007703)	ARHGAP45 (ENSNFUG00015007804)	POLR2E (ENSNFUG00015008738)	ENSNFUG00015008747	ENSNFUG00015008750	PIP5K1CA (ENSNFUG00015008755)	rab11ba (ENSNFUG00015008781)	ENSNFUG00015008809	MARCH2 (ENSNFUG00015008870)	ENSNFUG00015008879	FSD1 (ENSNFUG00015008936)	Nfu_g_1_016014 (ENSNFUG00015009142)	scamp4 (ENSNFUG00015009164)	CHAF1A (ENSNFUG00015009179)	UBXN6 (ENSNFUG00015009225)	uap1 (ENSNFUG00015009448) #22	DDR2 (ENSNFUG00015009566) #23	HSD17B7 (ENSNFUG00015010348) #24	SERBP1 (ENSNFUG00015010402)	il12rb2 (ENSNFUG00015010436)	ENSNFUG00015010453	echdc2 (ENSNFUG00015010470)	zyg11 (ENSNFUG00015010519)	SELRC1 (ENSNFUG00015010621)	ralgps2 (ENSNFUG00015010658)	ANGPTL1 (ENSNFUG00015010904)	FAM20B (ENSNFUG00015010912)	ENSNFUG00015010922	ENSNFUG00015010982	scfd2 (ENSNFUG00015011763)	ENSNFUG00015011791
Cyprinodontoidei	ANCESTRAL SPECIES	10	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b.a	ENSGT00950000182879.a.b.b.b.a.b.a	ENSGT00950000182879.a.b.b.b.a.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.c.a	ENSGT00950000182879.a.b.a.a.b.a.g.b.c.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.d	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659.l	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000158992	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.b.b.c	ENSGT00950000182879.a.b.b.b.b.d.a	ENSGT00950000182879.a.b.b.b.a.b.a	ENSGT00950000182879.a.b.b.b.a.b.b	ENSGT00950000182879.a.b.b.b.a.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.c.a	ENSGT00950000182879.a.b.a.a.b.a.g.b.c.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.d	ENSGT00950000182879.a.b.a.a.b.a.g.a
Poecilia	ANCESTRAL SPECIES	1	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659.l	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000158992	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.b.b.c	ENSGT00950000182879.a.b.b.b.b.d.a	ENSGT00950000182879.a.b.b.b.a.b.a	ENSGT00950000182879.a.b.b.b.a.b.b	ENSGT00950000182879.a.b.b.b.a.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.c.a	ENSGT00950000182879.a.b.a.a.b.a.g.b.c.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.d	ENSGT00950000182879.a.b.a.a.b.a.g.a
NAME_6	ANCESTRAL SPECIES	15	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659.l	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000158992	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.b.b.c.b	ENSGT00950000182879.a.b.b.b.b.c.a	ENSGT00950000182879.a.b.b.b.b.d.a	ENSGT00950000182879.a.b.b.b.a.b.b	ENSGT00950000182879.a.b.b.b.a.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.c.a	ENSGT00950000182879.a.b.a.a.b.a.g.b.c.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.d	ENSGT00950000182879.a.b.a.a.b.a.g.a
Sailfin molly	MODERN SPECIES	356	gpx4a (ENSPLAG00000014459)	PIP5K1C (ENSPLAG00000014355)	rab11ba (ENSPLAG00000014243)	marchf2 (ENSPLAG00000014223)	ENSPLAG00000014207	stap2b (ENSPLAG00000014188)	fsd1 (ENSPLAG00000014175)	si:ch211-129c21.1 (ENSPLAG00000014124)	scamp4 (ENSPLAG00000014115)	chaf1a (ENSPLAG00000014093)	ubxn6 (ENSPLAG00000014086)	ENSPLAG00000014080	ENSPLAG00000014016	ENSPLAG00000013998	ENSPLAG00000013987	uap1 (ENSPLAG00000013966) #22	DDR2 (ENSPLAG00000013923) #23	hsd17b7 (ENSPLAG00000013917) #24	serbp1a (ENSPLAG00000013912)	il12rb2 (ENSPLAG00000013899)	ENSPLAG00000013859	ENSPLAG00000013825	ENSPLAG00000013799	ENSPLAG00000013748	ENSPLAG00000013145	ENSPLAG00000013110
Amazon molly	MODERN SPECIES	665	SBNO2 (ENSPFOG00000004096)	tjp3 (ENSPFOG00000004984)	ARHGAP45 (ENSPFOG00000005406)	POLR2E (ENSPFOG00000005734)	ENSPFOG00000005793	PIP5K1C (ENSPFOG00000005815)	rab11ba (ENSPFOG00000006159)	marchf2 (ENSPFOG00000006218)	ENSPFOG00000006224	stap2b (ENSPFOG00000006279)	fsd1 (ENSPFOG00000006360)	si:ch211-129c21.1 (ENSPFOG00000006680)	scamp4 (ENSPFOG00000006940)	chaf1a (ENSPFOG00000006963)	ubxn6 (ENSPFOG00000007026)	uap1 (ENSPFOG00000024685) #22	DDR2 (ENSPFOG00000007058) #23	hsd17b7 (ENSPFOG00000007589) #24	serbp1a (ENSPFOG00000007643)	il12rb2 (ENSPFOG00000007735)	il23r (ENSPFOG00000024170)
Guppy	MODERN SPECIES	456	tjp3 (ENSPREG00000006711)	ARHGAP45 (ENSPREG00000006545)	POLR2E (ENSPREG00000006489)	GPX4 (ENSPREG00000006468)	PIP5K1C (ENSPREG00000006402)	rab11ba (ENSPREG00000006357)	marchf2 (ENSPREG00000006351)	ENSPREG00000006336	stap2b (ENSPREG00000006310)	fsd1 (ENSPREG00000006259)	si:ch211-129c21.1 (ENSPREG00000006188)	scamp4 (ENSPREG00000006161)	chaf1a (ENSPREG00000006130)	ubxn6 (ENSPREG00000006078)	DNAH8 (ENSPREG00000005886)	uap1 (ENSPREG00000005807) #22	DDR2 (ENSPREG00000005719) #23	hsd17b7 (ENSPREG00000005679) #24	serbp1a (ENSPREG00000005659)	il12rb2 (ENSPREG00000005625)	ENSPREG00000005591	ENSPREG00000005561	ENSPREG00000005547	ENSPREG00000005372	ENSPREG00000004573	ENSPREG00000004077	ENSPREG00000004024	cyp2ad2 (ENSPREG00000003998)	cyp2n13 (ENSPREG00000003454)	cyp2n13 (ENSPREG00000002902)	cyp2n13 (ENSPREG00000002812)
Platyfish	MODERN SPECIES	23	gpx4a (ENSXMAG00000012006)	ENSXMAG00000011962	rab11ba (ENSXMAG00000013416)	marchf2 (ENSXMAG00000026178)	ENSXMAG00000024840	stap2b (ENSXMAG00000011916)	fsd1 (ENSXMAG00000011902)	si:ch211-129c21.1 (ENSXMAG00000011886)	scamp4 (ENSXMAG00000011870)	chaf1a (ENSXMAG00000011864)	ubxn6 (ENSXMAG00000011842)	ENSXMAG00000021090	ENSXMAG00000024886	ENSXMAG00000027562	ENSXMAG00000023540	uap1 (ENSXMAG00000011735) #22	DDR2 (ENSXMAG00000011693) #23	hsd17b7 (ENSXMAG00000011686) #24	serbp1a (ENSXMAG00000011677)	il12rb2 (ENSXMAG00000011674)	ENSXMAG00000011673	ENSXMAG00000011672	ENSXMAG00000011668	ENSXMAG00000011671	ENSXMAG00000011670	ENSXMAG00000028094	cyp2ad2 (ENSXMAG00000027480)	cyp2n13 (ENSXMAG00000024113)	cyp2n13 (ENSXMAG00000011645)	cyp2n13 (ENSXMAG00000024505)	hook1 (ENSXMAG00000011589)
NAME_4	ANCESTRAL SPECIES	110	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b.a
Mummichog	MODERN SPECIES	2290	tjp3 (ENSFHEG00000022318)	ARHGAP45 (ENSFHEG00000022345)	POLR2E (ENSFHEG00000022398)	gpx4b (ENSFHEG00000022574)	PIP5K1C (ENSFHEG00000022625)	rab11ba (ENSFHEG00000022642)	marchf2 (ENSFHEG00000022646)	ENSFHEG00000022676	stap2b (ENSFHEG00000022718)	fsd1 (ENSFHEG00000022728)	si:ch211-129c21.1 (ENSFHEG00000022731)	scamp4 (ENSFHEG00000022755)	ENSFHEG00000022769	chaf1a (ENSFHEG00000022780)	ubxn6 (ENSFHEG00000022786)	uap1 (ENSFHEG00000022839) #22	DDR2 (ENSFHEG00000022871) #23	ENSFHEG00000022888 #24	hsd17b7 (ENSFHEG00000023222) #24	serbp1a (ENSFHEG00000001151)	il12rb2 (ENSFHEG00000001163)	ENSFHEG00000001169
Sheepshead minnow	MODERN SPECIES	995															ubxn6 (ENSCVAG00000010720)	uap1 (ENSCVAG00000010709) #22	DDR2 (ENSCVAG00000010641) #23	hsd17b7 (ENSCVAG00000000292) #24	serbp1a (ENSCVAG00000010534)	il12rb2 (ENSCVAG00000010531)	ENSCVAG00000010522	ENSCVAG00000010513	ENSCVAG00000010504	ENSCVAG00000010442	ENSCVAG00000010160	ENSCVAG00000009827
Oryzias	ANCESTRAL SPECIES	5	ENSGT00940000156577.a	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.b.a.c.a	ENSGT00950000182879.a.b.b.b.a.c.b	ENSGT00950000182879.a.b.b.b.a.d	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.f	ENSGT00950000182879.a.b.a.a.b.a.g.b.e	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600
Oryzias_a	ANCESTRAL SPECIES	24	ENSGT00940000156577.a	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.b.a.c.a	ENSGT00950000182879.a.b.b.b.a.c.b	ENSGT00950000182879.a.b.b.b.a.d	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.f	ENSGT00950000182879.a.b.a.a.b.a.g.b.e	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600
Japanese Medaka HdrR	MODERN SPECIES	18	amotl2a (ENSORLG00000015457)	tjp3 (ENSORLG00000015436)	ARHGAP45 (ENSORLG00000015393)	POLR2E (ENSORLG00000015346)	ENSORLG00000015339	PIP5K1C (ENSORLG00000015327)	rab11ba (ENSORLG00000015307)	marchf2 (ENSORLG00000015303)	ENSORLG00000015284	ENSORLG00000026413	fsd1 (ENSORLG00000015253)	si:ch211-129c21.1 (ENSORLG00000015228)	scamp4 (ENSORLG00000029740)	chaf1a (ENSORLG00000015193)	ubxn6 (ENSORLG00000015178)	uap1 (ENSORLG00000015154) #22	DDR2 (ENSORLG00000015116) #23	hsd17b7 (ENSORLG00000015071) #24	serbp1a (ENSORLG00000015043)	il12rb2 (ENSORLG00000015026)	ENSORLG00000027349	cyp2p3 (ENSORLG00000015011)	ENSORLG00000014936	ENSORLG00000028232	cyp2ad2 (ENSORLG00000014913)	cyp2n13 (ENSORLG00000014891)	cyp2n13 (ENSORLG00000014869)	cyp2n13 (ENSORLG00000021869)	hook1 (ENSORLG00000014822)	ENSORLG00000014802	pfas (ENSORLG00000014791)
Chinese medaka	MODERN SPECIES	95	ENSOSIG00000017072	GPR17 (ENSOSIG00000017791)	sap130a (ENSOSIG00000017881)	amotl2a (ENSOSIG00000017883)	tjp3 (ENSOSIG00000017907)	ARHGAP45 (ENSOSIG00000017940)	rab11ba (ENSOSIG00000018167)	marchf2 (ENSOSIG00000018172)	ENSOSIG00000018181	ENSOSIG00000018188	fsd1 (ENSOSIG00000018201)	si:ch211-129c21.1 (ENSOSIG00000018282)	scamp4 (ENSOSIG00000018305)	chaf1a (ENSOSIG00000018315)	ubxn6 (ENSOSIG00000018409)	uap1 (ENSOSIG00000018439) #22	DDR2 (ENSOSIG00000018474) #23	hsd17b7 (ENSOSIG00000018658) #24	serbp1a (ENSOSIG00000018661)	il12rb2 (ENSOSIG00000018664)	ENSOSIG00000018667	cyp2ad3 (ENSOSIG00000018672)	cyp2p6 (ENSOSIG00000000158)	cyp2n13 (ENSOSIG00000000503)	hook1 (ENSOSIG00000001083)	ENSOSIG00000003600	pfas (ENSOSIG00000003624)	IPO13 (ENSOSIG00000004054)	ENSOSIG00000004343
Oryzias_b	ANCESTRAL SPECIES	26	ENSGT00940000156577.a	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.b.a.c.a	ENSGT00950000182879.a.b.b.b.a.c.b	ENSGT00950000182879.a.b.b.b.a.d	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b.f	ENSGT00950000182879.a.b.a.a.b.a.g.b.e	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600
Javanese ricefish	MODERN SPECIES	18	amotl2a (ENSOJAG00000000111)	tjp3 (ENSOJAG00000000075)	ARHGAP45 (ENSOJAG00000012312)	POLR2E (ENSOJAG00000012258)	ENSOJAG00000012200	PIP5K1C (ENSOJAG00000011858)	ENSOJAG00000011713	marchf2 (ENSOJAG00000011638)	ENSOJAG00000011571	ENSOJAG00000011563	fsd1 (ENSOJAG00000011289)	si:ch211-129c21.1 (ENSOJAG00000011106)	scamp4 (ENSOJAG00000011088)	chaf1a (ENSOJAG00000010834)	ubxn6 (ENSOJAG00000010684)	uap1 (ENSOJAG00000010356) #22	DDR2 (ENSOJAG00000010035) #23	hsd17b7 (ENSOJAG00000009979) #24	serbp1a (ENSOJAG00000009965)	il12rb2 (ENSOJAG00000009941)	ENSOJAG00000009859	ENSOJAG00000009646	ENSOJAG00000009413	cyp2ad2 (ENSOJAG00000009343)	cyp2n13 (ENSOJAG00000009127)	cyp2n13 (ENSOJAG00000009095)	hook1 (ENSOJAG00000008708)	ENSOJAG00000008627	IPO13 (ENSOJAG00000006797)	ENSOJAG00000006724	mmachc (ENSOJAG00000006712)
Indian medaka	MODERN SPECIES	13	ENSOMEG00000002768	tjp3 (ENSOMEG00000000054)	ARHGAP45 (ENSOMEG00000002732)	POLR2E (ENSOMEG00000002709)	ENSOMEG00000002677	PIP5K1C (ENSOMEG00000002623)	rab11ba (ENSOMEG00000002581)	marchf2 (ENSOMEG00000002567)	ENSOMEG00000002562	ENSOMEG00000002541	fsd1 (ENSOMEG00000002522)	si:ch211-129c21.1 (ENSOMEG00000002494)	scamp4 (ENSOMEG00000002484)	chaf1a (ENSOMEG00000002469)	ubxn6 (ENSOMEG00000002453)	uap1 (ENSOMEG00000000042) #22	DDR2 (ENSOMEG00000002398) #23	hsd17b7 (ENSOMEG00000002364) #24	serbp1a (ENSOMEG00000002349)	il12rb2 (ENSOMEG00000002340)	ENSOMEG00000002325	ENSOMEG00000002314	ENSOMEG00000002301	ENSOMEG00000002282	ENSOMEG00000002266	ENSOMEG00000002255	ENSOMEG00000002241	cyp2ad2 (ENSOMEG00000002207)	cyp2n13 (ENSOMEG00000002182)	cyp2n13 (ENSOMEG00000000783)	ENSOMEG00000002062
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.h	ENSGT00940000158995.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000160836.d.b.b	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000167690	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT00390000003464	ENSGT00940000156906.j.a.a
Fugu	MODERN SPECIES	12	ARHGAP45 (ENSTRUG00000018228)	POLR2E (ENSTRUG00000018238)	gpx4b (ENSTRUG00000018245)	PIP5K1C (ENSTRUG00000018248)	ENSTRUG00000022029	marchf2 (ENSTRUG00000030753)	ENSTRUG00000021614	stap2b (ENSTRUG00000018287)	fsd1 (ENSTRUG00000018292)	ENSTRUG00000025996	si:ch211-129c21.1 (ENSTRUG00000025380)	scamp4 (ENSTRUG00000018301)	chaf1a (ENSTRUG00000018302)	ubxn6 (ENSTRUG00000018309)	fmo (ENSTRUG00000018321)	uap1 (ENSTRUG00000018335) #22	DDR2 (ENSTRUG00000018340) #23	hsd17b7 (ENSTRUG00000018364) #24	serbp1a (ENSTRUG00000018368)	ENSTRUG00000030488	ENSTRUG00000018372	cyp2p6 (ENSTRUG00000018373)	cyp2ad2 (ENSTRUG00000020610)	cyp2n13 (ENSTRUG00000018407)	cyp2n13 (ENSTRUG00000018418)	ENSTRUG00000018419	ENSTRUG00000028289	pfas (ENSTRUG00000018433)	IPO13 (ENSTRUG00000018436)	mmachc (ENSTRUG00000018443)	ENSTRUG00000018444
Tetraodon	MODERN SPECIES		tjp3 (ENSTNIG00000013189)	ARHGAP45 (ENSTNIG00000013188)	POLR2E (ENSTNIG00000013187)	ENSTNIG00000013186	PIP5K1C (ENSTNIG00000013185)	ENSTNIG00000013184	marchf2 (ENSTNIG00000013183)	ENSTNIG00000013182	ENSTNIG00000013181	fsd1 (ENSTNIG00000013180)	si:ch211-129c21.1 (ENSTNIG00000013179)	scamp4 (ENSTNIG00000013178)	chaf1a (ENSTNIG00000013177)	ubxn6 (ENSTNIG00000013176)	ENSTNIG00000013175	uap1 (ENSTNIG00000013174) #22	DDR2 (ENSTNIG00000013173) #23	hsd17b7 (ENSTNIG00000013172) #24	serbp1a (ENSTNIG00000013171)	il12rb2 (ENSTNIG00000001805)	ENSTNIG00000001804	ENSTNIG00000000727	ENSTNIG00000001576	ENSTNIG00000013170	cyp2ad2 (ENSTNIG00000013169)	cyp2n13 (ENSTNIG00000010866)	cyp2n13 (ENSTNIG00000010865)	ENSTNIG00000010864	ENSTNIG00000010863	pfas (ENSTNIG00000010862)	IPO13 (ENSTNIG00000010861)
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866
Ballan wrasse	MODERN SPECIES	497							rab11ba (ENSLBEG00000006087)	marchf2 (ENSLBEG00000006033)	ENSLBEG00000005981	ENSLBEG00000005932	fsd1 (ENSLBEG00000005871)	si:ch211-129c21.1 (ENSLBEG00000005828)	scamp4 (ENSLBEG00000005803)	chaf1a (ENSLBEG00000005685)	ubxn6 (ENSLBEG00000005614)	uap1 (ENSLBEG00000005520) #22	DDR2 (ENSLBEG00000005422) #23	hsd17b7 (ENSLBEG00000005341) #24	serbp1a (ENSLBEG00000005289)	il12rb2 (ENSLBEG00000005259)	ENSLBEG00000005222	ENSLBEG00000005207	ENSLBEG00000004771	ENSLBEG00000004212	ENSLBEG00000003658
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.b.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213
European seabass	MODERN SPECIES	17	tm6sf2b (ENSDLAG00005014398)	ENSDLAG00005014474	tjp3 (ENSDLAG00005015783)	ENSDLAG00005015927	ENSDLAG00005030390	ENSDLAG00005016577	ENSDLAG00005028338	ENSDLAG00005027338	ENSDLAG00005030419	ENSDLAG00005027138	ENSDLAG00005017525	si:ch211-129c21.1 (ENSDLAG00005017682)	scamp4 (ENSDLAG00005026827)	chaf1a (ENSDLAG00005017698)	ubxn6 (ENSDLAG00005017721)	uap1 (ENSDLAG00005017768) #22	ENSDLAG00005030851 #23	ENSDLAG00005033891 #23	hsd17b7 (ENSDLAG00005018188) #24	serbp1a (ENSDLAG00005018281)	il12rb2 (ENSDLAG00005018307)	ENSDLAG00005018334	ENSDLAG00005018361	ENSDLAG00005018472	ENSDLAG00005016291	ENSDLAG00005019168	ENSDLAG00005029009	ENSDLAG00005018196	ENSDLAG00005030565	cyp2n13 (ENSDLAG00005031306)	cyp2n13 (ENSDLAG00005018797)
Large yellow croaker	MODERN SPECIES	489	tjp3 (ENSLCRG00005013525)	ARHGAP45 (ENSLCRG00005010869)	POLR2E (ENSLCRG00005010845)	ENSLCRG00005010838	ENSLCRG00005010836	PIP5K1C (ENSLCRG00005010821)	ENSLCRG00005010771	marchf2 (ENSLCRG00005010768)	ENSLCRG00005010733	stap2b (ENSLCRG00005010729)	fsd1 (ENSLCRG00005010479)	si:ch211-129c21.1 (ENSLCRG00005010474)	scamp4 (ENSLCRG00005010467)	chaf1a (ENSLCRG00005010464)	ubxn6 (ENSLCRG00005010461)	uap1 (ENSLCRG00005009993) #22	DDR2 (ENSLCRG00005009764) #23	hsd17b7 (ENSLCRG00005009755) #24	serbp1a (ENSLCRG00005009754)	il12rb2 (ENSLCRG00005009750)	ENSLCRG00005009743	cyp2p6 (ENSLCRG00005009714)	cyp2ad2 (ENSLCRG00005009712)	cyp2n13 (ENSLCRG00005009708)	cyp2n13 (ENSLCRG00005009523)	cyp2n13 (ENSLCRG00005009514)	ENSLCRG00005009497	hook1 (ENSLCRG00005008409)	ENSLCRG00005008387	pfas (ENSLCRG00005008379)	IPO13 (ENSLCRG00005007800)
Gilthead seabream	MODERN SPECIES	2	SBNO2 (ENSSAUG00010004636)	tjp3 (ENSSAUG00010004595)	ARHGAP45 (ENSSAUG00010002870)	POLR2E (ENSSAUG00010002703)	GPX4a (ENSSAUG00010002689)	PIP5K1C (ENSSAUG00010002590)	ENSSAUG00010002528	marchf2 (ENSSAUG00010002517)	ENSSAUG00010002477	stap2b (ENSSAUG00010002471)	fsd1 (ENSSAUG00010001434)	si:ch211-129c21.1 (ENSSAUG00010001339)	scamp4 (ENSSAUG00010001324)	chaf1a (ENSSAUG00010001309)	ubxn6 (ENSSAUG00010013663)	uap1 (ENSSAUG00010013654) #22	DDR2 (ENSSAUG00010013526) #23	hsd17b7 (ENSSAUG00010013522) #24	serbp1a (ENSSAUG00010013520)	il12rb2 (ENSSAUG00010013514)	ENSSAUG00010013509	ENSSAUG00010013489	ENSSAUG00010013483	cyp2ad2 (ENSSAUG00010013482)	cyp2n13 (ENSSAUG00010013472)	cyp2n13 (ENSSAUG00010013461)	hook1 (ENSSAUG00010013403)	ENSSAUG00010013397	pfas (ENSSAUG00010011449)	IPO13 (ENSSAUG00010009758)	ENSSAUG00010009730
Perciformes	ANCESTRAL SPECIES	8	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213
Pike perch	MODERN SPECIES	34	SBNO2 (ENSSLUG00000014942)	tjp3 (ENSSLUG00000015106)	ARHGAP45 (ENSSLUG00000015210)	POLR2E (ENSSLUG00000015773)	gpx4b (ENSSLUG00000001474)	PIP5K1C (ENSSLUG00000001546)	ENSSLUG00000001628	marchf2 (ENSSLUG00000001696)	ENSSLUG00000001708	stap2b (ENSSLUG00000001757)	fsd1 (ENSSLUG00000001801)	si:ch211-129c21.1 (ENSSLUG00000001831)	scamp4 (ENSSLUG00000001841)	chaf1a (ENSSLUG00000001864)	ubxn6 (ENSSLUG00000001897)	uap1 (ENSSLUG00000001973) #22	DDR2 (ENSSLUG00000002178) #23	hsd17b7 (ENSSLUG00000002265) #24	serbp1a (ENSSLUG00000002274)	il12rb2 (ENSSLUG00000002283)	il23r (ENSSLUG00000002297)	cyp2p6 (ENSSLUG00000002333)	cyp2ad2 (ENSSLUG00000002615)	cyp2n13 (ENSSLUG00000002946)	hook1 (ENSSLUG00000003437)	cyp2n13 (ENSSLUG00000003456)	hook1 (ENSSLUG00000003670)	ENSSLUG00000005331	pfas (ENSSLUG00000005485)	IPO13 (ENSSLUG00000007502)	ENSSLUG00000008027
Channel bull blenny	MODERN SPECIES	18	ENSCGOG00000009472	tjp3 (ENSCGOG00000009463)	ARHGAP45 (ENSCGOG00000008902)	POLR2E (ENSCGOG00000008693)	gpx4b (ENSCGOG00000008676)	PIP5K1C (ENSCGOG00000006876)	rab11ba (ENSCGOG00000006718)	marchf2 (ENSCGOG00000006710)	ENSCGOG00000006672	stap2b (ENSCGOG00000006669)	fsd1 (ENSCGOG00000006417)	si:ch211-129c21.1 (ENSCGOG00000006397)	scamp4 (ENSCGOG00000006393)	chaf1a (ENSCGOG00000006388)	ubxn6 (ENSCGOG00000006305)	uap1 (ENSCGOG00000006032) #22	DDR2 (ENSCGOG00000005853) #23	hsd17b7 (ENSCGOG00000005828) #24	serbp1a (ENSCGOG00000005820)	il12rb2 (ENSCGOG00000005818)	ENSCGOG00000005804	ENSCGOG00000005746	cyp2ad2 (ENSCGOG00000005139)	ENSCGOG00000005038	cyp2n13 (ENSCGOG00000004970)	cyp2n13 (ENSCGOG00000004856)	cyp2n13 (ENSCGOG00000004847)	hook1 (ENSCGOG00000004684)	ENSCGOG00000004676	pfas (ENSCGOG00000003561)	IPO13 (ENSCGOG00000003263)
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000158995.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT00390000003464	ENSGT00940000156906.j.a.a	ENSGT00940000158798
Lumpfish	MODERN SPECIES	19	SBNO2 (ENSCLMG00005000780)	tjp3 (ENSCLMG00005001533)	ARHGAP45 (ENSCLMG00005001826)	POLR2E (ENSCLMG00005007020)	ENSCLMG00005007028	PIP5K1C (ENSCLMG00005007030)	ENSCLMG00005007178	marchf2 (ENSCLMG00005007179)	ENSCLMG00005007180	stap2b (ENSCLMG00005007183)	fsd1 (ENSCLMG00005007185)	si:ch211-129c21.1 (ENSCLMG00005007188)	scamp4 (ENSCLMG00005007191)	chaf1a (ENSCLMG00005007194)	ubxn6 (ENSCLMG00005007308)	uap1 (ENSCLMG00005007686) #22	DDR2 (ENSCLMG00005007715) #23	hsd17b7 (ENSCLMG00005008184) #24	serbp1a (ENSCLMG00005008195)	il12rb2 (ENSCLMG00005008196)	ENSCLMG00005008198	cyp2p6 (ENSCLMG00005008204)	cyp2ad2 (ENSCLMG00005008459)	cyp2n13 (ENSCLMG00005008735)	NEK1 (ENSCLMG00005010333)	sh3rf1 (ENSCLMG00005010348)	cbr4 (ENSCLMG00005010349)	PALLD (ENSCLMG00005010353)	anapc4 (ENSCLMG00005010527)	slain2 (ENSCLMG00005012046)	SLC10A4 (ENSCLMG00005012048)
Stickleback	MODERN SPECIES	8	ppat (ENSGACG00000014340)	ENSGACG00000014343	CARMIL3 (ENSGACG00000014346)	ENSGACG00000014359	ENSGACG00000014362	ENSGACG00000014368	ENSGACG00000014370	ENSGACG00000014374	fsd1 (ENSGACG00000014380)	ENSGACG00000014402	si:ch211-129c21.1 (ENSGACG00000014404)	scamp4 (ENSGACG00000014412)	chaf1a (ENSGACG00000014428)	ENSGACG00000014430	ubxn6 (ENSGACG00000014431)	uap1 (ENSGACG00000014445) #22	DDR2 (ENSGACG00000014457) #23	serbp1a (ENSGACG00000014467)	il12rb2 (ENSGACG00000014528)	cyp2p7 (ENSGACG00000014531)	cyp2n13 (ENSGACG00000014535)	hook1 (ENSGACG00000014545)	IPO13 (ENSGACG00000014562)	mmachc (ENSGACG00000014565)	echdc2 (ENSGACG00000014569)	zyg11 (ENSGACG00000014574)	coa7 (ENSGACG00000014584)	ralgps2 (ENSGACG00000014587)	angptl1a (ENSGACG00000014590)	fam20b (ENSGACG00000014604)	jun (ENSGACG00000014608)
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213
Carangaria	ANCESTRAL SPECIES	7	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213
Pleuronectoidei	ANCESTRAL SPECIES	29	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000163126.a.b.g.b	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00940000163126.a.b.h	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213
Turbot	MODERN SPECIES	3	ENSSMAG00000012489	tjp3 (ENSSMAG00000012656)	ENSSMAG00000012720	ENSSMAG00000012782	ENSSMAG00000012809	ENSSMAG00000012826	ENSSMAG00000018613	ENSSMAG00000018632	ENSSMAG00000022469	ENSSMAG00000018573	ENSSMAG00000018528	si:ch211-129c21.1 (ENSSMAG00000018515)	scamp4 (ENSSMAG00000018501)	chaf1a (ENSSMAG00000018482)	ubxn6 (ENSSMAG00000018472)	uap1 (ENSSMAG00000018456) #22	ENSSMAG00000018395 #23	serbp1a (ENSSMAG00000018372)	il12rb2 (ENSSMAG00000018366)	ENSSMAG00000026117	il23r (ENSSMAG00000018352)	cyp2p6 (ENSSMAG00000018344)	cyp2ad2 (ENSSMAG00000018341)	cyp2n13 (ENSSMAG00000018331)	cyp2n13 (ENSSMAG00000018325)	hook1 (ENSSMAG00000018281)	ENSSMAG00000018268	pfas (ENSSMAG00000018198)	ENSSMAG00000018046	ENSSMAG00000031460	ENSSMAG00000018003
Tongue sole	MODERN SPECIES	11	SBNO2 (ENSCSEG00000006856)	tjp3 (ENSCSEG00000006942)	ARHGAP45 (ENSCSEG00000007060)	POLR2E (ENSCSEG00000007107)	rab11ba (ENSCSEG00000007121)	marchf2 (ENSCSEG00000007136)	gpx4a (ENSCSEG00000007167)	PIP5K1C (ENSCSEG00000007222)	ENSCSEG00000007239	ENSCSEG00000007249	fsd1 (ENSCSEG00000007260)	si:ch211-129c21.1 (ENSCSEG00000007288)	scamp4 (ENSCSEG00000007313)	chaf1a (ENSCSEG00000007318)	ubxn6 (ENSCSEG00000007338)	uap1 (ENSCSEG00000007365) #22	DDR2 (ENSCSEG00000007389) #23	hsd17b7 (ENSCSEG00000007452) #24	serbp1a (ENSCSEG00000007473)	ENSCSEG00000007482	faslg (ENSCSEG00000007485)	ENSCSEG00000007493	echdc2 (ENSCSEG00000007501)	zyg11 (ENSCSEG00000007515)	coa7 (ENSCSEG00000007558)	ralgps2 (ENSCSEG00000007585)	angptl1a (ENSCSEG00000007645)	fam20b (ENSCSEG00000007654)	mmachc (ENSCSEG00000007667)	ENSCSEG00000007680	ENSCSEG00000007699
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213
Seriola	ANCESTRAL SPECIES	21	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213
Greater amberjack	MODERN SPECIES	110	SBNO2 (ENSSDUG00000003527)	tjp3 (ENSSDUG00000003464)	ARHGAP45 (ENSSDUG00000003398)	POLR2E (ENSSDUG00000003352)	gpx4a (ENSSDUG00000003134)	PIP5K1C (ENSSDUG00000003016)	rab11ba (ENSSDUG00000002965)	marchf2 (ENSSDUG00000002943)	ENSSDUG00000002934	ENSSDUG00000002896	fsd1 (ENSSDUG00000002877)	si:ch211-129c21.1 (ENSSDUG00000002808)	scamp4 (ENSSDUG00000002782)	chaf1a (ENSSDUG00000002692)	ubxn6 (ENSSDUG00000002654)	uap1 (ENSSDUG00000002609) #22	DDR2 (ENSSDUG00000002557) #23	hsd17b7 (ENSSDUG00000002521) #24	serbp1a (ENSSDUG00000002481)	il12rb2 (ENSSDUG00000002457)	ENSSDUG00000002420	cyp2p6 (ENSSDUG00000002402)	cyp2ad2 (ENSSDUG00000002386)	cyp2n13 (ENSSDUG00000001817)	cyp2n13 (ENSSDUG00000001630)	hook1 (ENSSDUG00000001523)	ENSSDUG00000001487	pfas (ENSSDUG00000001342)	IPO13 (ENSSDUG00000001233)	ENSSDUG00000001213	ENSSDUG00000001199
Yellowtail amberjack	MODERN SPECIES	2677	SBNO2 (ENSSLDG00000004623)	tjp3 (ENSSLDG00000004734)	ARHGAP45 (ENSSLDG00000004808)	POLR2E (ENSSLDG00000004965)	gpx4a (ENSSLDG00000005019)	PIP5K1C (ENSSLDG00000005123)	rab11ba (ENSSLDG00000005221)	marchf2 (ENSSLDG00000005251)	ENSSLDG00000005275	stap2b (ENSSLDG00000005300)	fsd1 (ENSSLDG00000005330)	si:ch211-129c21.1 (ENSSLDG00000005355)	scamp4 (ENSSLDG00000005492)	chaf1a (ENSSLDG00000005531)	ubxn6 (ENSSLDG00000005723)	uap1 (ENSSLDG00000005767) #22	DDR2 (ENSSLDG00000005869) #23	hsd17b7 (ENSSLDG00000005949) #24	serbp1a (ENSSLDG00000005983)	ENSSLDG00000006070	cyp2p6 (ENSSLDG00000006265)	ENSSLDG00000006282	cyp2n13 (ENSSLDG00000006366)	cyp2n13 (ENSSLDG00000006741)	hook1 (ENSSLDG00000007232)	ENSSLDG00000007294	pfas (ENSSLDG00000007323)	IPO13 (ENSSLDG00000007412)	ENSSLDG00000007468	ENSSLDG00000007488	mmachc (ENSSLDG00000007508)
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	117	SBNO2 (ENSLCAG00010010136)	tjp3 (ENSLCAG00010010039)	ARHGAP45 (ENSLCAG00010009991)	POLR2E (ENSLCAG00010009937)	GPX4 (ENSLCAG00010009902)	PIP5K1C (ENSLCAG00010009759)	ENSLCAG00010009646	marchf2 (ENSLCAG00010009622)	ENSLCAG00010009549	ENSLCAG00010009530	fsd1 (ENSLCAG00010009482)	si:ch211-129c21.1 (ENSLCAG00010009466)	scamp4 (ENSLCAG00010009459)	chaf1a (ENSLCAG00010009454)	ubxn6 (ENSLCAG00010009444)	uap1 (ENSLCAG00010009388) #22	DDR2 (ENSLCAG00010009354) #23	hsd17b7 (ENSLCAG00010009344) #24	serbp1a (ENSLCAG00010009339)	ENSLCAG00010009335	ENSLCAG00010009325	ENSLCAG00010009217	ENSLCAG00010009182	cyp2ad2 (ENSLCAG00010009170)	cyp2n13 (ENSLCAG00010009117)	cyp2n13 (ENSLCAG00010009097)	hook1 (ENSLCAG00010009019)	ENSLCAG00010008989	pfas (ENSLCAG00010008947)	IPO13 (ENSLCAG00010008737)	ENSLCAG00010008683
Barramundi perch	MODERN SPECIES	926													scamp4 (ENSLCAG00010002236)	chaf1a (ENSLCAG00010002234)	ubxn6 (ENSLCAG00010002232)	uap1 (ENSLCAG00010002220) #22
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000170739	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.b	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866	ENSGT00740000116213
Zig-zag eel	MODERN SPECIES	18	tjp3 (ENSMAMG00000018725)	ENSMAMG00000018688	ENSMAMG00000018703	ENSMAMG00000018612	ENSMAMG00000027280	ENSMAMG00000018576	ENSMAMG00000018556	ENSMAMG00000018541	ENSMAMG00000018533	ENSMAMG00000027773	ENSMAMG00000018455	si:ch211-129c21.1 (ENSMAMG00000018435)	scamp4 (ENSMAMG00000025900)	chaf1a (ENSMAMG00000018408)	ubxn6 (ENSMAMG00000018397)	uap1 (ENSMAMG00000018365) #22	ENSMAMG00000018316 #23	hsd17b7 (ENSMAMG00000018239) #24	serbp1a (ENSMAMG00000018229)	il12rb2 (ENSMAMG00000018218)	il23r (ENSMAMG00000018157)	ENSMAMG00000018106	ENSMAMG00000024287	cyp2ad2 (ENSMAMG00000017916)	cyp2n13 (ENSMAMG00000017517)	cyp2n13 (ENSMAMG00000017505)	hook1 (ENSMAMG00000017421)	ENSMAMG00000017410	pfas (ENSMAMG00000017333)	ENSMAMG00000017290	ENSMAMG00000017282
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b.g.a	ENSGT00530000063841.b.a	ENSGT00940000159440	ENSGT00940000165728.c	ENSGT00940000166572	ENSGT00440000034888	ENSGT00940000157273	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00940000155776.a	ENSGT00940000159829.d	ENSGT00950000182879.a.b.b.a.a.a.b.a	ENSGT00950000182879.a.b.b.a.a.b.a.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00950000182879.a.b.a.a.b.a.g.b	ENSGT00950000182879.a.b.a.a.b.a.g.a	ENSGT00940000159251	ENSGT00390000017123.a	ENSGT00390000007600	ENSGT00530000063347.A.b	ENSGT01070000253866
Climbing perch	MODERN SPECIES	17	tjp3 (ENSATEG00000023807)	ENSATEG00000023771	ENSATEG00000023760	ENSATEG00000023754	ENSATEG00000026865	ENSATEG00000023737	ENSATEG00000026681	ENSATEG00000029113	ENSATEG00000023725	ENSATEG00000023717	ENSATEG00000023710	si:ch211-129c21.1 (ENSATEG00000023698)	scamp4 (ENSATEG00000026734)	chaf1a (ENSATEG00000023683)	ubxn6 (ENSATEG00000023678)	uap1 (ENSATEG00000023663) #22	ENSATEG00000023653 #23	hsd17b7 (ENSATEG00000023642) #24	serbp1a (ENSATEG00000023637)	il12rb2 (ENSATEG00000023631)	il23r (ENSATEG00000023627)	ENSATEG00000025483	ENSATEG00000023563	ENSATEG00000029722	ENSATEG00000027477	ENSATEG00000025943	ENSATEG00000028222	ENSATEG00000029478	ENSATEG00000026906	ENSATEG00000026125	ENSATEG00000027146
Siamese fighting fish	MODERN SPECIES	15	ralgps2 (ENSBSLG00000010870)	fam20b (ENSBSLG00000010809)	faslg (ENSBSLG00000010777)	si:dkey-86e18.1 (ENSBSLG00000010735)	ENSBSLG00000010717	ENSBSLG00000010693	ENSBSLG00000010618	jun (ENSBSLG00000010589)	prdx6 (ENSBSLG00000010569)	plpp6 (ENSBSLG00000010567)	ENSBSLG00000010370	si:dkey-239i20.4 (ENSBSLG00000010357)	ENSBSLG00000010355	ENSBSLG00000010345	ENSBSLG00000010265	uap1 (ENSBSLG00000009778) #22	DDR2 (ENSBSLG00000009369) #23	serbp1a (ENSBSLG00000009337)	il12rb2 (ENSBSLG00000009299)	ENSBSLG00000009271	ENSBSLG00000009181	ENSBSLG00000008982	ENSBSLG00000008924	ENSBSLG00000008296	ENSBSLG00000002932	ENSBSLG00000002883	ENSBSLG00000002861	ENSBSLG00000002853	ENSBSLG00000002688	ENSBSLG00000002531	ENSBSLG00000002330
Protacanthopterygii	ANCESTRAL SPECIES	34	ENSGT00940000155195	ENSGT00940000157937.b	ENSGT00940000158520.e.b	ENSGT00940000157316.f	ENSGT00940000157316.e.b	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380 #27	ENSGT00940000159036 #26	ENSGT00510000046975.b #17	ENSGT00940000164616	ENSGT00940000157769 #21	ENSGT00940000153464.A.b #22	ENSGT00940000154842.a.b.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a	ENSGT00730000111014.o.b	ENSGT00530000063751.a.a	ENSGT00940000157990.a.b	ENSGT00940000166379	ENSGT00940000160062.b	ENSGT00390000010172	ENSGT00940000164461	ENSGT00390000003428	ENSGT00670000099343	ENSGT00440000033811	ENSGT00940000161471	ENSGT00940000162640
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	60	ENSGT00940000155195.h	ENSGT00940000157937.b.a	ENSGT00940000158520.e.b.b	ENSGT00940000157316.f	ENSGT00940000158520.f	ENSGT00940000157316.e.b.a	ENSGT00940000156099.f	ENSGT00940000165058.a.g	ENSGT00940000154304.C.b	ENSGT00940000164081.b.f	ENSGT00940000157380.c.b #27	ENSGT00940000159036.f #26	ENSGT00510000046975.b.k #17	ENSGT00940000164616	ENSGT00940000157769.p #21	ENSGT00940000153464.A.b.q #22	ENSGT00940000154842.a.b.e.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a.c	ENSGT00730000111014.o.b.f	ENSGT00530000063751.a.a.f	ENSGT00940000157990.a.b.a	ENSGT00940000166379.b	ENSGT00940000160062.b.d	ENSGT00390000010172.tb	ENSGT00940000164461	ENSGT00390000003428.f	ENSGT00670000099343.a	ENSGT00440000033811	ENSGT00940000161471.g	ENSGT00940000162640.c
Salmoninae_a	ANCESTRAL SPECIES	46	ENSGT00940000155195.h	ENSGT00940000157937.b.a	ENSGT00940000158520.e.b.b	ENSGT00940000157316.f	ENSGT00940000157316.e.b.a	ENSGT00940000156099.f	ENSGT00940000165058.a.g	ENSGT00990000209517	ENSGT00940000154304.C.b	ENSGT00940000164081.b.f	ENSGT00940000157380.c.b #27	ENSGT00940000159036.f #26	ENSGT00510000046975.b.k #17	ENSGT00940000164616	ENSGT00940000157769.p #21	ENSGT00940000153464.A.b.q #22	ENSGT00940000154842.a.b.e.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a.c	ENSGT00730000111014.o.b.f	ENSGT00530000063751.a.a.f	ENSGT00940000157990.a.b.a	ENSGT00940000166379.b	ENSGT00940000160062.b.d	ENSGT00390000010172.tb	ENSGT00940000164461	ENSGT00390000003428.f	ENSGT00670000099343.a	ENSGT00440000033811	ENSGT00940000161471.g	ENSGT00940000162640.c
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00940000155195.h	ENSGT00940000157937.b.a	ENSGT00940000158520.e.b.b	ENSGT00940000157316.f	ENSGT00940000157316.e.b.a	ENSGT00940000156099.f	ENSGT00940000165058.a.g	ENSGT00990000209517	ENSGT00940000154304.C.b	ENSGT00940000164081.b.f	ENSGT00940000157380.c.b #27	ENSGT00940000159036.f #26	ENSGT00510000046975.b.k #17	ENSGT00940000164616	ENSGT00940000157769.p #21	ENSGT00940000153464.A.b.q #22	ENSGT00940000154842.a.b.e.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a.c	ENSGT00730000111014.o.b.f	ENSGT00530000063751.a.a.f	ENSGT00940000157990.a.b.a	ENSGT00940000166379.b	ENSGT00940000160062.b.d	ENSGT00390000010172.tb	ENSGT00940000164461.lb	ENSGT00390000003428.f	ENSGT00670000099343.a	ENSGT00440000033811	ENSGT00940000161471.g	ENSGT00940000162640.c
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000159250.n	ENSGT00940000155195.h	ENSGT00940000157937.b.a	ENSGT00940000158520.e.b.b	ENSGT00940000157316.f	ENSGT00940000157316.e.b.a	ENSGT00940000156099.f	ENSGT00940000165058.a.g	ENSGT00990000209517	ENSGT00940000154304.C.b	ENSGT00940000164081.b.f	ENSGT00940000157380.c.b #27	ENSGT00940000159036.f #26	ENSGT00510000046975.b.k #17	ENSGT00940000157769.p #21	ENSGT00940000153464.A.b.q #22	ENSGT00940000154842.a.b.e.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a.c	ENSGT00730000111014.o.b.f	ENSGT00530000063751.a.a.f	ENSGT00940000157990.a.b.a	ENSGT00940000166379.b	ENSGT00940000160062.b.d	ENSGT00390000010172.tb	ENSGT00390000003428.f	ENSGT00670000099343.a	ENSGT00440000033811	ENSGT00940000161471.g	ENSGT00940000162640.c	ENSGT00940000165649.e
Chinook salmon	MODERN SPECIES		LRRC8C (ENSOTSG00005033797)	uchl5 (ENSOTSG00005033785)	ENSOTSG00005033770	RGS13 (ENSOTSG00005033765)	ENSOTSG00005033763	RGS1 (ENSOTSG00005033759)	brinp3a.2 (ENSOTSG00005033758)	brinp3a.1 (ENSOTSG00005033757)	ENSOTSG00005033756	rgs8 (ENSOTSG00005033755)	rgs16 (ENSOTSG00005033704)	rgs5a (ENSOTSG00005033703) #27	rgs4 (ENSOTSG00005033700) #26	ENSOTSG00005033697 #17	uhmk1 (ENSOTSG00005033694) #21	uap1 (ENSOTSG00005033180) #22	DDR2 (ENSOTSG00005033127) #23	ENSOTSG00005033115 #24	serbp1a (ENSOTSG00005033084)	tprb (ENSOTSG00005032894)	ENSOTSG00005032861	ENSOTSG00005032858	nrl (ENSOTSG00005032855)	ENSOTSG00005032851	paics (ENSOTSG00005031944)	ppat (ENSOTSG00005031930)	ENSOTSG00005031928	AASDH (ENSOTSG00005031923)	cracd (ENSOTSG00005031922)	chst14 (ENSOTSG00005031918)	cep135 (ENSOTSG00005031907)
Coho salmon	MODERN SPECIES	1	uchl5 (ENSOKIG00005020077)	ENSOKIG00005020029	ENSOKIG00005020015	RGS13 (ENSOKIG00005020006)	RGS1 (ENSOKIG00005020001)	ENSOKIG00005019994	brinp3a.2 (ENSOKIG00005019983)	brinp3a.1 (ENSOKIG00005019954)	rgs8 (ENSOKIG00005019948)	rgs16 (ENSOKIG00005019935)	rgs5a (ENSOKIG00005019924) #27	rgs4 (ENSOKIG00005019913) #26	ENSOKIG00005019904	ENSOKIG00005019871 #17	uhmk1 (ENSOKIG00005019819) #21	uap1 (ENSOKIG00005019658) #22	DDR2 (ENSOKIG00005019403) #23	ENSOKIG00005019357 #24	serbp1a (ENSOKIG00005019333)	ENSOKIG00005019318	tprb (ENSOKIG00005019019)	ENSOKIG00005018960	ENSOKIG00005018894	nrl (ENSOKIG00005018887)	ENSOKIG00005018867	paics (ENSOKIG00005018350)	ppat (ENSOKIG00005018219)	AASDH (ENSOKIG00005018135)	cracd (ENSOKIG00005018108)	chst14 (ENSOKIG00005018099)	cep135 (ENSOKIG00005018058)
Rainbow trout	MODERN SPECIES	22	uchl5 (ENSOMYG00000014643)	ENSOMYG00000014709	RGS13 (ENSOMYG00000077225)	ENSOMYG00000014683	RGS1 (ENSOMYG00000014620)	brinp3a.2 (ENSOMYG00000014608)	brinp3a.1 (ENSOMYG00000014578)	rgs8 (ENSOMYG00000014555)	rgs16 (ENSOMYG00000056056)	rgs5a (ENSOMYG00000014532) #27	rgs4 (ENSOMYG00000052330) #26	ENSOMYG00000063811 #17	ENSOMYG00000050321	ENSOMYG00000056159	uhmk1 (ENSOMYG00000014497) #21	uap1 (ENSOMYG00000014055) #22	ENSOMYG00000013833 #23	ENSOMYG00000070155	serbp1a (ENSOMYG00000013784)	ENSOMYG00000011658	ENSOMYG00000011441	ENSOMYG00000011310	ENSOMYG00000011288	ENSOMYG00000068922	paics (ENSOMYG00000011122)	ENSOMYG00000048628	ppat (ENSOMYG00000011044)	AASDH (ENSOMYG00000010991)	cracd (ENSOMYG00000010956)	ENSOMYG00000050697	ENSOMYG00000010912
Salmo	ANCESTRAL SPECIES	20	ENSGT00940000159250.n	ENSGT00940000155195.h	ENSGT00940000157937.b.a	ENSGT00940000158520.e.b.b	ENSGT00940000157316.f	ENSGT00940000157316.e.b.a	ENSGT00940000156099.f	ENSGT00940000165058.a.g	ENSGT00990000209517	ENSGT00940000154304.C.b	ENSGT00940000164081.b.f	ENSGT00940000157380.c.b #27	ENSGT00940000159036.f #26	ENSGT00510000046975.b.k #17	ENSGT00940000157769.p #21	ENSGT00940000153464.A.b.q #22	ENSGT00940000154842.a.b.e.e #23	ENSGT00390000013340.d #24	ENSGT00520000055591.a.a.c	ENSGT00730000111014.o.b.f	ENSGT00530000063751.a.a.f	ENSGT00940000157990.a.b.a	ENSGT00940000166379.b	ENSGT00940000160062.b.d	ENSGT00390000010172.tb	ENSGT00390000003428.f	ENSGT00440000033811	ENSGT00940000161471.g	ENSGT00940000162640.c	ENSGT00940000165649.e	ENSGT00940000158640.i
Atlantic salmon	MODERN SPECIES	15	ENSSSAG00000010199	RGS1 (ENSSSAG00000010206)	brinp3a.2 (ENSSSAG00000010211)	brinp3a.1 (ENSSSAG00000010229)	ENSSSAG00000099957	ENSSSAG00000010238	rgs8 (ENSSSAG00000084763)	rgs16 (ENSSSAG00000010258)	rgs5a (ENSSSAG00000010277) #27	rgs4 (ENSSSAG00000092662) #26	ENSSSAG00000092001	ENSSSAG00000096231 #17	uhmk1 (ENSSSAG00000110248) #21	ENSSSAG00000100008	ENSSSAG00000106233	uap1 (ENSSSAG00000010526) #22	ENSSSAG00000015802 #23	hsd17b7 (ENSSSAG00000031963) #24	serbp1a (ENSSSAG00000032139)	ENSSSAG00000033233	ENSSSAG00000040343	ENSSSAG00000040388	ENSSSAG00000040731	ENSSSAG00000040748	paics (ENSSSAG00000040893)	ppat (ENSSSAG00000042182)	ENSSSAG00000121485	ENSSSAG00000083847	AASDH (ENSSSAG00000042247)	cracd (ENSSSAG00000042849)	ENSSSAG00000042869
River trout	MODERN SPECIES	33	brinp3a.1 (ENSSTUG00000012724)	ENSSTUG00000012732	rgs8 (ENSSTUG00000012736)	rgs16 (ENSSTUG00000012756)	rgs5a (ENSSTUG00000012775) #27	rgs4 (ENSSTUG00000012793) #26	ENSSTUG00000012803 #17	ENSSTUG00000012851	ENSSTUG00000012863	ENSSTUG00000012875	ENSSTUG00000012881	ENSSTUG00000012906	ENSSTUG00000012924	ENSSTUG00000012930	uhmk1 (ENSSTUG00000012961) #21	uap1 (ENSSTUG00000012994) #22	ENSSTUG00000013232	ENSSTUG00000013242	DDR2 (ENSSTUG00000013276) #23	hsd17b7 (ENSSTUG00000000180) #24	serbp1a (ENSSTUG00000000202)	tprb (ENSSTUG00000000269)	ENSSTUG00000000411	ENSSTUG00000000448	nrl (ENSSTUG00000000474)	ENSSTUG00000000485	paics (ENSSTUG00000000523)	ppat (ENSSTUG00000000699)	AASDH (ENSSTUG00000000719)	cracd (ENSSTUG00000000803)	chst14 (ENSSTUG00000000810)
Huchen	MODERN SPECIES	439												ENSHHUG00000030491 #17	ENSHHUG00000030501	ENSHHUG00000030506	uhmk1 (ENSHHUG00000030515) #21	uap1 (ENSHHUG00000030537) #22	DDR2 (ENSHHUG00000030633) #23	hsd17b7 (ENSHHUG00000030667) #24	serbp1a (ENSHHUG00000030681)	tprb (ENSHHUG00000030688)	ENSHHUG00000030718	ENSHHUG00000030726	nrl (ENSHHUG00000030760)	ENSHHUG00000030767	paics (ENSHHUG00000030770)	ppat (ENSHHUG00000030784)	ENSHHUG00000030963	ENSHHUG00000030971	AASDH (ENSHHUG00000030984)	cracd (ENSHHUG00000031026)	chst14 (ENSHHUG00000031050)
Salmoninae	ANCESTRAL SPECIES	15	ENSGT00940000159250.m	ENSGT00940000164211	ENSGT00940000155195.g	ENSGT00940000157937.b.b	ENSGT00940000158520.e.b.a	ENSGT00940000157316.e.b.b	ENSGT00940000156099.e	ENSGT00940000165058.a.h	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C.a	ENSGT00940000164081.b.e	ENSGT00940000157380.c.a #27	ENSGT00940000159036.e #26	ENSGT00510000046975.b.j #17	ENSGT00940000157769.o #21	ENSGT00940000153464.A.b.r #22	ENSGT00940000154842.a.b.e.f #23	ENSGT00520000055591.a.a.d	ENSGT00730000111014.o.b.e	ENSGT00530000063751.a.a.e	ENSGT00940000157990.a.b.b	ENSGT00940000166379.a	ENSGT00940000160062.b.c	ENSGT00390000010172.ub	ENSGT00390000003428.e	ENSGT00670000099343.b	ENSGT00940000161471.h	ENSGT00940000162640.d	ENSGT00940000158640.j	ENSGT00510000048726.b	ENSGT00940000157580.a.a.c
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00940000159250.m	ENSGT00940000164211	ENSGT00940000155195.g	ENSGT00940000157937.b.b	ENSGT00940000158520.e.b.a	ENSGT00940000157316.e.b.b	ENSGT00940000156099.e	ENSGT00940000165058.a.h	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C.a	ENSGT00940000164081.b.e	ENSGT00940000157380.c.a #27	ENSGT00940000159036.e #26	ENSGT00510000046975.b.j #17	ENSGT00940000157769.o #21	ENSGT00940000153464.A.b.r #22	ENSGT00940000154842.a.b.e.f #23	ENSGT00520000055591.a.a.d	ENSGT00730000111014.o.b.e	ENSGT00530000063751.a.a.e	ENSGT00940000157990.a.b.b	ENSGT00940000166379.a	ENSGT00940000160062.b.c	ENSGT00390000010172.ub	ENSGT00390000003428.e	ENSGT00670000099343.b	ENSGT00940000161471.h	ENSGT00940000162640.d	ENSGT00940000158640.j	ENSGT00510000048726.b	ENSGT00940000157580.a.a.c
Salmo	ANCESTRAL SPECIES	14	ENSGT00940000159250.m.c	ENSGT00940000164211	ENSGT00940000155195.g	ENSGT00940000157937.b.b	ENSGT00940000158520.e.b.a	ENSGT00940000157316.e.b.b	ENSGT00940000156099.e	ENSGT00940000165058.a.h	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C.a	ENSGT00940000164081.b.e	ENSGT00940000157380.c.a #27	ENSGT00940000159036.e #26	ENSGT00510000046975.b.j #17	ENSGT00940000157769.o #21	ENSGT00940000153464.A.b.r #22	ENSGT00940000154842.a.b.e.f #23	ENSGT00520000055591.a.a.d	ENSGT00730000111014.o.b.e	ENSGT00530000063751.a.a.e	ENSGT00940000157990.a.b.b	ENSGT00940000166379.a	ENSGT00940000160062.b.c	ENSGT00390000010172.ub	ENSGT00390000003428.e	ENSGT00670000099343.b	ENSGT00940000161471.h	ENSGT00940000162640.d	ENSGT00940000158640.j	ENSGT00940000176973.a	ENSGT00510000048726.b
River trout	MODERN SPECIES	14	LRRC8C (ENSSTUG00000002738)	glrx2 (ENSSTUG00000002604)	uchl5 (ENSSTUG00000002644)	ENSSTUG00000002593	RGS13 (ENSSTUG00000002578)	RGS1 (ENSSTUG00000002569)	brinp3a.2 (ENSSTUG00000002555)	brinp3a.1 (ENSSTUG00000002525)	ENSSTUG00000002512	rgs8 (ENSSTUG00000002507)	rgs16 (ENSSTUG00000002495)	rgs5a (ENSSTUG00000002489) #27	rgs4 (ENSSTUG00000002484) #26	ENSSTUG00000016489 #17	uhmk1 (ENSSTUG00000016471) #21	uap1 (ENSSTUG00000015973) #22	DDR2 (ENSSTUG00000015773) #23	serbp1a (ENSSTUG00000015725)	tprb (ENSSTUG00000013032)	prg4b (ENSSTUG00000012812)	ENSSTUG00000012632	nrl (ENSSTUG00000012618)	REM2 (ENSSTUG00000012581)	paics (ENSSTUG00000012102)	ppat (ENSSTUG00000011964)	ENSSTUG00000011949	cracd (ENSSTUG00000011852)	chst14 (ENSSTUG00000011845)	exoc1 (ENSSTUG00000011507)	ENSSTUG00000011460	clocka (ENSSTUG00000010504)
Atlantic salmon	MODERN SPECIES	1	LRRC8C (ENSSSAG00000030668)	glrx2 (ENSSSAG00000030560)	uchl5 (ENSSSAG00000028321)	RGS2 (ENSSSAG00000027956)	RGS13 (ENSSSAG00000027762)	RGS1 (ENSSSAG00000027609)	brinp3a.2 (ENSSSAG00000025797)	brinp3a.1 (ENSSSAG00000024431)	ENSSSAG00000024249	rgs8 (ENSSSAG00000115928)	rgs16 (ENSSSAG00000023910)	RGS5 (ENSSSAG00000023533) #27	rgs4 (ENSSSAG00000088625) #26	ENSSSAG00000023006 #17	uhmk1 (ENSSSAG00000109815) #21	uap1 (ENSSSAG00000019712) #22	ENSSSAG00000017684 #23	serbp1a (ENSSSAG00000017429)	ENSSSAG00000015852	ENSSSAG00000116736	ENSSSAG00000015744	ENSSSAG00000015526	ENSSSAG00000015485	ENSSSAG00000015445	paics (ENSSSAG00000010758)	PPAT (ENSSSAG00000010520)	ENSSSAG00000010452	cracd (ENSSSAG00000010269)	ENSSSAG00000111516	ENSSSAG00000010241	EXOC1 (ENSSSAG00000006392)
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00940000159250.m	ENSGT00940000164211	ENSGT00940000155195.g	ENSGT00940000157937.b.b	ENSGT00940000158520.e.b.a	ENSGT00940000157316.e.b.b	ENSGT00940000156099.e	ENSGT00940000165058.a.h	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C.a	ENSGT00940000164081.b.e	ENSGT00940000157380.c.a #27	ENSGT00940000159036.e #26	ENSGT00510000046975.b.j #17	ENSGT00940000157769.o #21	ENSGT00940000153464.A.b.r #22	ENSGT00940000154842.a.b.e.f #23	ENSGT00520000055591.a.a.d	ENSGT00730000111014.o.b.e	ENSGT00530000063751.a.a.e	ENSGT00940000157990.a.b.b.b	ENSGT00940000166379.a	ENSGT00940000160062.b.c	ENSGT00390000010172.ub	ENSGT00940000164461.kb	ENSGT00390000003428.e	ENSGT00670000099343.b	ENSGT00940000161471.h	ENSGT00940000162640.d	ENSGT00940000158640.j	ENSGT00510000048726.b
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000067217	RGS1 (ENSOMYG00000012525)	brinp3a.2 (ENSOMYG00000012456)	ENSOMYG00000054136	ENSOMYG00000076135	brinp3a.1 (ENSOMYG00000012431)	ENSOMYG00000012344	rgs8 (ENSOMYG00000012326)	rgs16 (ENSOMYG00000012320)	rgs5a (ENSOMYG00000012308) #27	ENSOMYG00000068573	rgs4 (ENSOMYG00000066730) #26	ENSOMYG00000012286 #17	ENSOMYG00000053007	uhmk1 (ENSOMYG00000012261) #21	uap1 (ENSOMYG00000012062) #22	ENSOMYG00000011961 #23	serbp1a (ENSOMYG00000011907)	ENSOMYG00000009177	ENSOMYG00000008368	ENSOMYG00000008281	ENSOMYG00000008147	ENSOMYG00000008093	paics (ENSOMYG00000008066)	ENSOMYG00000008056	PPAT (ENSOMYG00000007988)	cracd (ENSOMYG00000059164)	ENSOMYG00000067055	ENSOMYG00000007923	EXOC1 (ENSOMYG00000007846)	nmu (ENSOMYG00000007518)
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00940000159250.m	ENSGT00940000164211	ENSGT00940000155195.g	ENSGT00940000157937.b.b	ENSGT00940000158520.e.b.a	ENSGT00940000157316.e.b.b	ENSGT00940000156099.e	ENSGT00940000165058.a.h	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C.a	ENSGT00940000164081.b.e	ENSGT00940000157380.c.a #27	ENSGT00940000159036.e #26	ENSGT00510000046975.b.j #17	ENSGT00940000157769.o #21	ENSGT00940000153464.A.b.r #22	ENSGT00940000154842.a.b.e.f #23	ENSGT00520000055591.a.a.d	ENSGT00730000111014.o.b.e	ENSGT00530000063751.a.a.e	ENSGT00940000157990.a.b.b.a	ENSGT00940000166379.a	ENSGT00940000160062.b.c	ENSGT00390000010172.ub	ENSGT00390000003428.e	ENSGT00670000099343.b	ENSGT00940000161471.h	ENSGT00940000162640.d	ENSGT00940000158640.j	ENSGT00510000048726.b	ENSGT00940000157580.a.a.c
Coho salmon	MODERN SPECIES	4	uchl5 (ENSOKIG00005047517)	ENSOKIG00005047575	RGS13 (ENSOKIG00005047580)	ENSOKIG00005047585	RGS1 (ENSOKIG00005047597)	ENSOKIG00005047610	brinp3a.2 (ENSOKIG00005047620)	brinp3a.1 (ENSOKIG00005047647)	ENSOKIG00005047657	rgs8 (ENSOKIG00005047692)	rgs16 (ENSOKIG00005047697)	rgs5a (ENSOKIG00005047708) #27	rgs4 (ENSOKIG00005047735) #26	ENSOKIG00005047740 #17	uhmk1 (ENSOKIG00005047753) #21	uap1 (ENSOKIG00005047773) #22	DDR2 (ENSOKIG00005047831) #23	serbp1a (ENSOKIG00005047907)	TPR (ENSOKIG00005047953)	ENSOKIG00005048113	ENSOKIG00005048141	ENSOKIG00005048179	REM2 (ENSOKIG00005048181)	paics (ENSOKIG00005048197)	PPAT (ENSOKIG00005048311)	ENSOKIG00005048318	cracd (ENSOKIG00005048331)	CHST14 (ENSOKIG00005048334)	EXOC1 (ENSOKIG00005048357)	nmu (ENSOKIG00005048902)	CLOCK (ENSOKIG00005048996)
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	29	glrx2 (ENSOTSG00005034135)	uchl5 (ENSOTSG00005034108)	ENSOTSG00005034106	RGS13 (ENSOTSG00005034105)	RGS1 (ENSOTSG00005034102)	brinp3a.2 (ENSOTSG00005034100)	pno1 (ENSOTSG00005034097)	brinp3a.1 (ENSOTSG00005034095)	ENSOTSG00005034009	rgs8 (ENSOTSG00005034008)	rgs16 (ENSOTSG00005034007)	rgs5a (ENSOTSG00005034006) #27	rgs4 (ENSOTSG00005034005) #26	ENSOTSG00005034004 #17	uhmk1 (ENSOTSG00005034003) #21	uap1 (ENSOTSG00005033978) #22	DDR2 (ENSOTSG00005033973) #23	serbp1a (ENSOTSG00005033970)	tprb (ENSOTSG00005033935)	ENSOTSG00005033933	ENSOTSG00005033930	nrl (ENSOTSG00005033929)	ENSOTSG00005033927	ENSOTSG00005033924	paics (ENSOTSG00005033333)	ppat (ENSOTSG00005033328)	ENSOTSG00005033326	cracd (ENSOTSG00005033325)	exoc1 (ENSOTSG00005032522)	nmu (ENSOTSG00005032521)	clocka (ENSOTSG00005030978)
Chinook salmon	MODERN SPECIES	29	glrx2 (ENSOTSG00005021788)	uchl5 (ENSOTSG00005021766)	ENSOTSG00005021765	RGS13 (ENSOTSG00005021764)	RGS1 (ENSOTSG00005021763)	brinp3a.2 (ENSOTSG00005021744)	pno1 (ENSOTSG00005021741)	brinp3a.1 (ENSOTSG00005021740)	ENSOTSG00005021636	rgs8 (ENSOTSG00005021633)	rgs16 (ENSOTSG00005021631)	rgs5a (ENSOTSG00005021628) #27	rgs4 (ENSOTSG00005021626) #26	ENSOTSG00005021624 #17	uhmk1 (ENSOTSG00005021623) #21	uap1 (ENSOTSG00005021609) #22	DDR2 (ENSOTSG00005021605) #23	serbp1a (ENSOTSG00005021601)	tprb (ENSOTSG00005021597)	ENSOTSG00005021592	ENSOTSG00005021581	nrl (ENSOTSG00005021568)	ENSOTSG00005021561	ENSOTSG00005021557	paics (ENSOTSG00005020458)	ppat (ENSOTSG00005020453)	ENSOTSG00005020452	cracd (ENSOTSG00005020450)	exoc1 (ENSOTSG00005020314)	nmu (ENSOTSG00005020306)	clocka (ENSOTSG00005019295)
Huchen	MODERN SPECIES	442																uap1 (ENSHHUG00000036552) #22	DDR2 (ENSHHUG00000036535) #23	serbp1a (ENSHHUG00000036510)	ENSHHUG00000036505	tprb (ENSHHUG00000036290)	ENSHHUG00000036278	ENSHHUG00000036236	nrl (ENSHHUG00000036227)	REM2 (ENSHHUG00000036206)	paics (ENSHHUG00000036126)	ppat (ENSHHUG00000035999)	ENSHHUG00000035978	ENSHHUG00000035974	cracd (ENSHHUG00000035961)	ENSHHUG00000035955	exoc1 (ENSHHUG00000035825)
Northern pike	MODERN SPECIES	7	uchl5 (ENSELUG00000003300)	ENSELUG00000003314	RGS13 (ENSELUG00000031770)	ENSELUG00000003335	RGS1 (ENSELUG00000003351)	brinp3a.2 (ENSELUG00000000111)	brinp3a.1 (ENSELUG00000003393)	ENSELUG00000003442	rgs8 (ENSELUG00000030393)	rgs16 (ENSELUG00000003499)	RGS5 (ENSELUG00000026705) #27	ENSELUG00000026954	rgs4 (ENSELUG00000003529) #26	NOS1AP (ENSELUG00000003580) #17	uhmk1 (ENSELUG00000003613) #21	uap1 (ENSELUG00000003648) #22	DDR2 (ENSELUG00000003697) #23	serbp1a (ENSELUG00000003727)	tprb (ENSELUG00000003778)	ENSELUG00000003806	ENSELUG00000003870	nrl (ENSELUG00000003877)	ENSELUG00000003891	paics (ENSELUG00000003937)	ppat (ENSELUG00000003992)	ENSELUG00000004031	AASDH (ENSELUG00000004068)	cracd (ENSELUG00000004112)	chst14 (ENSELUG00000028149)	cep135 (ENSELUG00000004169)	exoc1 (ENSELUG00000004265)
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	5	ENSGT00940000156725.a	ENSGT00940000158821.j	ENSGT00390000016548	ENSGT00940000155446	ENSGT00940000155152.f.b	ENSGT00560000077332	ENSGT00940000154967.b.b.a	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000159036.a #26	ENSGT00510000046975.b #17	ENSGT00940000157769 #21	ENSGT00940000153464.A.b.s #22	ENSGT00940000154842.a.b.e #23	ENSGT00520000055591.a.a	ENSGT00940000159829.c.a	ENSGT00940000159829.d	ENSGT01030000234573.A.b.a.b	ENSGT00940000156209	ENSGT00940000174981.a	ENSGT00940000156301.a.a	ENSGT00390000006503.a	ENSGT00940000158755.a	ENSGT00940000154568	ENSGT00940000157092.q	ENSGT00940000158648.c	ENSGT00940000157568.c	ENSGT00940000153947.B.a
Asian bonytongue	MODERN SPECIES	24	ENSSFOG00015002822	ENSSFOG00015002688	ENSSFOG00015002740	ENSSFOG00015002676	glrx2 (ENSSFOG00015002662)	uchl5 (ENSSFOG00015002628)	brinp3a.2 (ENSSFOG00015002598)	brinp3a.1 (ENSSFOG00015002567)	ENSSFOG00015002452	rgs8 (ENSSFOG00015002422)	rgs16 (ENSSFOG00015002203)	rgs5a (ENSSFOG00015025961) #27	rgs4 (ENSSFOG00015002140) #26	ENSSFOG00015002068 #17	uhmk1 (ENSSFOG00015002013) #21	uap1 (ENSSFOG00015001952) #22	DDR2 (ENSSFOG00015001943) #23	serbp1a (ENSSFOG00015001870)	ENSSFOG00015001797	ENSSFOG00015001776	MIER1 (ENSSFOG00015001746)	dnai4 (ENSSFOG00015001726)	ENSSFOG00015001713	SGIP1 (ENSSFOG00015031180)	PDE4B (ENSSFOG00015001634)	ENSSFOG00015030854	lepr (ENSSFOG00015001625)	DNAJC6 (ENSSFOG00015001526)	AK3 (ENSSFOG00015001475)	jak1 (ENSSFOG00015001377)	RAVER2 (ENSSFOG00015001335)
P. kingsleyae	MODERN SPECIES	5	DENND1B (ENSPKIG00000016049)	crb1 (ENSPKIG00000015952)	aspm (ENSPKIG00000015833)	ENSPKIG00000015778	GLRX2 (ENSPKIG00000015759)	brinp3a.2 (ENSPKIG00000015726)	brinp3a.1 (ENSPKIG00000015702)	ENSPKIG00000015659	rgs8 (ENSPKIG00000015620)	rgs16 (ENSPKIG00000015525)	rgs5a (ENSPKIG00000015499) #27	ENSPKIG00000015477	rgs4 (ENSPKIG00000015451) #26	ENSPKIG00000015372 #17	uhmk1 (ENSPKIG00000015328) #21	uap1 (ENSPKIG00000015291) #22	DDR2 (ENSPKIG00000015188) #23	serbp1a (ENSPKIG00000015108)	ENSPKIG00000015066	ENSPKIG00000015010	MIER1 (ENSPKIG00000014969)	dnai4 (ENSPKIG00000014864)	ENSPKIG00000014840	SGIP1 (ENSPKIG00000014494)	PDE4B (ENSPKIG00000014217)	LEPROT (ENSPKIG00000014148)	DNAJC6 (ENSPKIG00000014063)	ak4 (ENSPKIG00000014010)	jak1 (ENSPKIG00000013954)	RAVER2 (ENSPKIG00000013925)	ENSPKIG00000013908
Osteoglossiformes	ANCESTRAL SPECIES	51	ENSGT00940000155152.f.a	ENSGT00550000075080	ENSGT00940000158746	ENSGT00940000155117.f.a	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000155195	ENSGT00940000157937.b	ENSGT00940000158520.e.a	ENSGT00940000157316	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00940000157380 #27	ENSGT00940000159036.b #26	ENSGT00940000153464.A.b.t #22	ENSGT00940000154842.a.b.f #23	ENSGT00390000013340 #24	ENSGT00520000055591.a.b	ENSGT00940000159829.c.b	ENSGT00940000155665.a	ENSGT01030000234573.A.b.a.a	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301.a.b	ENSGT00940000155190	ENSGT00730000111209.k	ENSGT00940000158755.b	ENSGT00940000157092.r	ENSGT00940000158648.d	ENSGT00940000157568.d
Asian bonytongue	MODERN SPECIES	18	ENSSFOG00015031503	ENSSFOG00015030344	KCNT2 (ENSSFOG00015011805)	b3galt2 (ENSSFOG00015031272)	cdc73 (ENSSFOG00015011900)	ro60 (ENSSFOG00015011990)	rgs2 (ENSSFOG00015030714)	rgs13 (ENSSFOG00015012027)	RGS1 (ENSSFOG00015012047)	rgs18 (ENSSFOG00015012080)	ENSSFOG00015012096	rgs5b (ENSSFOG00015012140)	rgs5a (ENSSFOG00015025128) #27	rgs4 (ENSSFOG00015012181) #26	ENSSFOG00015012194 #17	UAP1 (ENSSFOG00015012249) #22	DDR2 (ENSSFOG00015012278) #23	hsd17b7 (ENSSFOG00015012348) #24	SERBP1 (ENSSFOG00015026486)	ENSSFOG00015012402	slc35d1a (ENSSFOG00015012432)	mier1a (ENSSFOG00015012453)	insl5b (ENSSFOG00015012465)	dynlt5 (ENSSFOG00015012485)	SGIP1 (ENSSFOG00015012521)	PDE4B (ENSSFOG00015012694)	LEPR (ENSSFOG00015012782)	ENSSFOG00015012808	LEPROT (ENSSFOG00015025521)	DNAJC6 (ENSSFOG00015012857)	jak1 (ENSSFOG00015012910)
P. kingsleyae	MODERN SPECIES	81	ENSPKIG00000018060	ZBTB41 (ENSPKIG00000018092)	cdc73 (ENSPKIG00000018155)	b3galt2 (ENSPKIG00000018205)	ro60 (ENSPKIG00000018217)	uchl5 (ENSPKIG00000018255)	rgs2 (ENSPKIG00000018309)	rgs13 (ENSPKIG00000018325)	RGS1 (ENSPKIG00000018348)	rgs18 (ENSPKIG00000018364)	ENSPKIG00000018382	rgs5b (ENSPKIG00000018406)	RGS5 (ENSPKIG00000018423) #27	rgs4 (ENSPKIG00000018438) #26	ENSPKIG00000018473 #17	UAP1 (ENSPKIG00000018534) #22	DDR2 (ENSPKIG00000018612) #23	mier1a (ENSPKIG00000018689)	slc35d1a (ENSPKIG00000018736)	ENSPKIG00000018793	SERBP1 (ENSPKIG00000018832)	hsd17b7 (ENSPKIG00000018855) #24	ENSPKIG00000018889	dynlt5 (ENSPKIG00000018906)	SGIP1 (ENSPKIG00000018931)	PDE4B (ENSPKIG00000019035)	lepr (ENSPKIG00000019200)	DNAJC6 (ENSPKIG00000019236)	jak1 (ENSPKIG00000019281)	RAVER2 (ENSPKIG00000019357)	CACHD1 (ENSPKIG00000019410)
Spotted gar	MODERN SPECIES	648	ro60 (ENSLOCG00000007384)	uchl5 (ENSLOCG00000007370)	ENSLOCG00000007350	rgs13 (ENSLOCG00000007328)	RGS1 (ENSLOCG00000007316)	rgs18 (ENSLOCG00000007296)	brinp3a.2 (ENSLOCG00000007286)	brinp3a.1 (ENSLOCG00000007272)	ENSLOCG00000007261	rgs5b (ENSLOCG00000007246)	rgs5a (ENSLOCG00000007218) #27	rgs4 (ENSLOCG00000007206) #26	H4C7 (ENSLOCG00000017741)	ENSLOCG00000007192 #17	uhmk1 (ENSLOCG00000007180) #21	uap1 (ENSLOCG00000007170) #22	DDR2 (ENSLOCG00000007142) #23	hsd17b7 (ENSLOCG00000007122) #24	serbp1a (ENSLOCG00000007107)	ENSLOCG00000007083	ENSLOCG00000007069	slc35d1b (ENSLOCG00000007054)	mier1a (ENSLOCG00000007038)	dnai4 (ENSLOCG00000007005)	insl5a (ENSLOCG00000006990)	dynlt5 (ENSLOCG00000006973)	SGIP1 (ENSLOCG00000006955)	PDE4B (ENSLOCG00000006922)	lepr (ENSLOCG00000006903)	LEPROT (ENSLOCG00000006886)	DNAJC6 (ENSLOCG00000006853)
Reedfish	MODERN SPECIES	1	rgs18 (ENSECRG00000011654)	brinp3a.2 (ENSECRG00000011652)	ENSECRG00000011647	brinp3a.1 (ENSECRG00000011623)	ENSECRG00000011611	ENSECRG00000011588	rgs8 (ENSECRG00000011563)	rgs16 (ENSECRG00000011546)	rgs5a (ENSECRG00000011534) #27	rgs4 (ENSECRG00000011519) #26	rpl27 (ENSECRG00000011509)	ENSECRG00000011494 #17	ENSECRG00000011482 #17	ENSECRG00000011471	uhmk1 (ENSECRG00000011461) #21	uap1 (ENSECRG00000011438) #22	ENSECRG00000011414 #23	hsd17b7 (ENSECRG00000011393) #24	serbp1a (ENSECRG00000011358)	IL12RB2 (ENSECRG00000011310)	slc35d1b (ENSECRG00000009488)	mier1b (ENSECRG00000009470)	dnai4 (ENSECRG00000009439)	insl5a (ENSECRG00000009426)	dynlt5 (ENSECRG00000009416)	SGIP1 (ENSECRG00000009386)	PDE4B (ENSECRG00000009352)	lepr (ENSECRG00000009304)	LEPROT (ENSECRG00000009275)	DNAJC6 (ENSECRG00000009249)	ak4 (ENSECRG00000009230)
Elephant shark	MODERN SPECIES	1526	ENSCMIG00000019019	glrx2 (ENSCMIG00000019018)	ro60 (ENSCMIG00000019002)	uchl5 (ENSCMIG00000018986)	RGS1 (ENSCMIG00000018982)	ENSCMIG00000018980	rgs18 (ENSCMIG00000018976)	ENSCMIG00000018972	ENSCMIG00000018970 #27	ENSCMIG00000018965 #28	uhmk1 (ENSCMIG00000018958) #21	NOS1AP (ENSCMIG00000018950) #17	rgs4 (ENSCMIG00000018945) #26	b3galt2 (ENSCMIG00000018943)	rgs5a (ENSCMIG00000018942) #27	uap1 (ENSCMIG00000018933) #22	DDR2 (ENSCMIG00000018920) #23	hsd17b7 (ENSCMIG00000018913) #24	ENSCMIG00000018904	ENSCMIG00000018902	ENSCMIG00000018900	mgst3 (ENSCMIG00000018897)	aldh9a1a.1 (ENSCMIG00000018878)	tmco1 (ENSCMIG00000018863)	ENSCMIG00000018859	FAM78B (ENSCMIG00000018857)	plpp6 (ENSCMIG00000018855)	ENSCMIG00000018853	ENSCMIG00000018851	PRRC2C (ENSCMIG00000018826)	myoc (ENSCMIG00000018808)
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153464.A.a ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000153464.A.a ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000153464.A.a ##22
Actinopterygii	ANCESTRAL SPECIES	196	ENSGT00390000000560	ENSGT00940000154043.A	ENSGT00390000006287	ENSGT00390000004067	ENSGT00390000005742	ENSGT00940000156235.c	ENSGT00390000012207	ENSGT00940000163383	ENSGT00940000155841	ENSGT00940000158633	ENSGT00390000001098	ENSGT00940000156811	ENSGT00450000040324.b	ENSGT00940000157207.a	ENSGT00940000159428	ENSGT00940000153464.A.a ##22	ENSGT00940000162727	ENSGT00940000167622
Neopterygii	ANCESTRAL SPECIES	187	ENSGT00940000160404	ENSGT00390000000560	ENSGT00940000154043.A	ENSGT00390000006287	ENSGT00390000004067	ENSGT00390000005742	ENSGT00940000156235.c	ENSGT00390000012207	ENSGT00940000163383	ENSGT00940000155841	ENSGT00940000158633	ENSGT00390000001098	ENSGT00940000156811	ENSGT00450000040324.b	ENSGT00940000157207.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902	ENSGT00940000164790	ENSGT00940000153877	ENSGT00530000065225
Osteoglossocephalai	ANCESTRAL SPECIES	464															ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b
Osteoglossiformes	ANCESTRAL SPECIES	73											ENSGT00940000158633.a.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.h	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000159875	ENSGT00940000156888.b	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00940000154115.d	ENSGT00940000157986	ENSGT00950000183200.B	ENSGT01010000222287.B.a.a.a.b	ENSGT00550000074823.b.b	ENSGT00940000156239.e	ENSGT00390000002931	ENSGT00950000182936.a.b.b
Asian bonytongue	MODERN SPECIES	21	ENSSFOG00015024936	ENSSFOG00015033038	ENSSFOG00015031551	SCAI (ENSSFOG00015032090)	PPP6C (ENSSFOG00015015094)	ENSSFOG00015033015	ENSSFOG00015015138	SH3GLB2 (ENSSFOG00015015172)	ENSSFOG00015015243	PIP5KL1 (ENSSFOG00015015251)	dpm2 (ENSSFOG00015033056)	ENSSFOG00015015295	eeig1b (ENSSFOG00015025518)	NAIF1 (ENSSFOG00015015307)	slc25a25b (ENSSFOG00015030265)	uap1l1 (ENSSFOG00015015353) ##22	zdhhc12b (ENSSFOG00015015374)	ENSSFOG00015015387	sfrp1b (ENSSFOG00015015426)	ENSSFOG00015015440	ENSSFOG00015025014	TCIM (ENSSFOG00015015559)	ppp3ccb (ENSSFOG00015015580)	ENSSFOG00015015649	ENSSFOG00015015665	adam9 (ENSSFOG00015015739)	dmtn (ENSSFOG00015015782)	pbdc1 (ENSSFOG00015015830)	xpo7 (ENSSFOG00015015859)	GFRA2 (ENSSFOG00015015943)	dusp11 (ENSSFOG00015025576)
P. kingsleyae	MODERN SPECIES	2	ENSPKIG00000021087	ENSPKIG00000021125	MFSD14B (ENSPKIG00000021197)	ENSPKIG00000021284	ENSPKIG00000021370	ENSPKIG00000021376	tdgf1 (ENSPKIG00000021384)	ENSPKIG00000021393	ENSPKIG00000021405	ENSPKIG00000021414	ENSPKIG00000021435	PIP5KL1 (ENSPKIG00000021448)	dpm2 (ENSPKIG00000021474)	eeig1b (ENSPKIG00000021496)	slc25a25b (ENSPKIG00000021548)	uap1l1 (ENSPKIG00000021613) ##22	zdhhc12b (ENSPKIG00000021757)	ENSPKIG00000021680	SFRP1 (ENSPKIG00000021780)	ENSPKIG00000021792	tcimb (ENSPKIG00000021807)	ENSPKIG00000021825	ENSPKIG00000021868	ENSPKIG00000021937	ENSPKIG00000021949	rab36 (ENSPKIG00000021975)	DEPDC5 (ENSPKIG00000022014)	ywhah (ENSPKIG00000022072)	slc5a1 (ENSPKIG00000022197)	RNF208 (ENSPKIG00000022439)	nt5c2l1 (ENSPKIG00000022472)
Clupeocephala	ANCESTRAL SPECIES	51															ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.b	ENSGT00940000158483	ENSGT00940000153877.a.a.b	ENSGT00940000156662.d	ENSGT00530000063497.a.a	ENSGT00530000063187.A	ENSGT00940000158674	ENSGT00940000177481	ENSGT00940000153181	ENSGT00440000038585.c	ENSGT00440000038585.d	ENSGT00530000063156.a.a.b	ENSGT00940000156340.a.c
Otomorpha	ANCESTRAL SPECIES	194	ENSGT00620000089226	ENSGT00940000154394.a.d	ENSGT01060000248575.C	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194.d	ENSGT00390000016384.l.a	ENSGT00940000158501.d.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d	ENSGT00530000063497.a.a
Clupeiformes	ANCESTRAL SPECIES	105	ENSGT00940000158540	ENSGT00940000159990	ENSGT00940000157419	ENSGT00940000153391.c.b.a.j.b	ENSGT00940000157936	ENSGT00940000157194.d	ENSGT00390000016384.l.a	ENSGT00940000158501.d.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d	ENSGT00530000063497.a.a
Atlantic herring	MODERN SPECIES	3	nr5a1b (ENSCHAG00000009743)	NR6A1 (ENSCHAG00000009757)	OLFML2A (ENSCHAG00000009877)	rpl35 (ENSCHAG00000009913)	arpc5lb (ENSCHAG00000009956)	SCAI (ENSCHAG00000010110)	ppp6c (ENSCHAG00000010333)	ENSCHAG00000010356	ENSCHAG00000010369	sh3glb2b (ENSCHAG00000010417)	PIP5KL1 (ENSCHAG00000011429)	dpm2 (ENSCHAG00000011439)	dpm2 (ENSCHAG00000011469)	eeig1b (ENSCHAG00000011493)	slc25a25b (ENSCHAG00000011571)	uap1l1 (ENSCHAG00000013164) ##22	zdhhc12b (ENSCHAG00000013283)	ENSCHAG00000013440	setb (ENSCHAG00000019128)	dync2i2 (ENSCHAG00000019172)	sptan1 (ENSCHAG00000019407)	PTGES2 (ENSCHAG00000022991)	zer1 (ENSCHAG00000023015)	TBC1D13 (ENSCHAG00000023380)	ODF2 (ENSCHAG00000023478)	PTGES2 (ENSCHAG00000023511)	zer1 (ENSCHAG00000023524)	RALGDS (ENSCHAG00000023569)	lmbrd2b (ENSCHAG00000023656)	capslb (ENSCHAG00000023871)	il7r (ENSCHAG00000023878)
Denticle herring	MODERN SPECIES	13	AJM1 (ENSDCDG00000027154)	RABL6 (ENSDCDG00000027149)	TRAF2 (ENSDCDG00000027145)	ENSDCDG00000024317	ENSDCDG00000024162	zgc:73226 (ENSDCDG00000024159)	TMEM233 (ENSDCDG00000024157)	MSI1 (ENSDCDG00000024113)	crybb3 (ENSDCDG00000024110)	CRYBB2 (ENSDCDG00000024109)	ENSDCDG00000024107	rplp0 (ENSDCDG00000024100)	CIT (ENSDCDG00000022831)	ENSDCDG00000022319	CUX2 (ENSDCDG00000022242)	uap1l1 (ENSDCDG00000022226) ##22	zdhhc12b (ENSDCDG00000022220)	ENSDCDG00000017019	setb (ENSDCDG00000016962)	dync2i2 (ENSDCDG00000016959)	sptan1 (ENSDCDG00000007640)	ODF2 (ENSDCDG00000006952)	zer1 (ENSDCDG00000006711)	TBC1D13 (ENSDCDG00000005615)	RALGDS (ENSDCDG00000005584)	lmbrd2b (ENSDCDG00000005515)	capslb (ENSDCDG00000005513)	il7r (ENSDCDG00000005512)	myo5b (ENSDCDG00000003609)	cfap53 (ENSDCDG00000003392)	ENSDCDG00000003374
Otophysi	ANCESTRAL SPECIES	27	ENSGT00940000155228	ENSGT00940000156179	ENSGT00940000160156	ENSGT00940000155045	ENSGT00940000155668.j	ENSGT00940000154890.a.a	ENSGT01020000230351.C	ENSGT00940000165424.a.b.a	ENSGT00940000167171	ENSGT00940000181433	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a
Characiphysae	ANCESTRAL SPECIES	65	ENSGT00390000005976.a.a.a	ENSGT00940000155228	ENSGT00940000156179	ENSGT00940000160156	ENSGT00940000155045	ENSGT00940000155668.j	ENSGT00940000154890.a.a	ENSGT01020000230351.C	ENSGT00940000167171	ENSGT00940000181433	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000157272.h	ENSGT01030000234517.E.c	ENSGT00940000158557.l	ENSGT00390000017839	ENSGT00940000156747	ENSGT00940000167280	ENSGT00940000157044	ENSGT00390000001752	ENSGT00940000155690.b.a.a	ENSGT00940000158976	ENSGT00530000063474.B.e.b	ENSGT00940000154006.b	ENSGT00510000048674
Channel catfish	MODERN SPECIES	20	spns3 (ENSIPUG00000009962)	ube2g1a (ENSIPUG00000010059)	ankfy1 (ENSIPUG00000010171)	cyb5d2 (ENSIPUG00000010275)	ZZEF1 (ENSIPUG00000010298)	ATP2A3 (ENSIPUG00000010531)	camkk1 (ENSIPUG00000010647)	p2rx1 (ENSIPUG00000010709)	Megf9 (ENSIPUG00000010740)	si:dkey-220k22.3 (ENSIPUG00000010764)	sh3glb2 (ENSIPUG00000010785)	pip5kl1 (ENSIPUG00000010909)	DPM2 (ENSIPUG00000010963)	fam102a (ENSIPUG00000011001)	slc25a25b (ENSIPUG00000011070)	uap1l1 (ENSIPUG00000011115) ##22	Zdhhc12 (ENSIPUG00000011134)	pkn3 (ENSIPUG00000011154)	ENSIPUG00000011255	rplp0 (ENSIPUG00000011275)	ENSIPUG00000011377	CIT (ENSIPUG00000011395)	ENSIPUG00000011469	Rab35 (ENSIPUG00000011489)	dhx33 (ENSIPUG00000011594)	nupr1a (ENSIPUG00000011648)	Vkorc1l1 (ENSIPUG00000011671)	GUSB (ENSIPUG00000011688)	ca4a (ENSIPUG00000011729)	ca4a (ENSIPUG00000011745)	mtmr4 (ENSIPUG00000011795)
Characiphysae_b	ANCESTRAL SPECIES	43	ENSGT00390000005976.a.a.b	ENSGT00390000005976.a.a.a	ENSGT00940000155228	ENSGT00940000156179	ENSGT00940000160156	ENSGT00940000155045	ENSGT00940000155668.j	ENSGT00940000154890.a.a	ENSGT01020000230351.C	ENSGT00940000165424.a.b.a	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000157272.h	ENSGT01030000234517.E.c	ENSGT00940000158557.l	ENSGT00390000017839	ENSGT00940000156747	ENSGT00940000167280	ENSGT00940000157044	ENSGT00390000001752	ENSGT00940000155690.b.a.a	ENSGT00940000158976	ENSGT00530000063474.B.e.b	ENSGT00940000154006.b	ENSGT00510000048674
Characoidei	ANCESTRAL SPECIES	69	ENSGT00390000005976.a.a.b	ENSGT00390000005976.a.a.a	ENSGT00940000155228	ENSGT00940000156179	ENSGT00940000160156	ENSGT00940000155045	ENSGT00940000155668.j	ENSGT00940000154890.a.a	ENSGT01020000230351.C	ENSGT00940000165424.a.b.a	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000157272.h	ENSGT01030000234517.E.c	ENSGT00940000158557.l	ENSGT00390000017839
Red-bellied piranha	MODERN SPECIES	77	spns3 (ENSPNAG00000012884)	ube2g1a (ENSPNAG00000012902)	ankfy1 (ENSPNAG00000012957)	cyb5d2 (ENSPNAG00000012963)	ZZEF1 (ENSPNAG00000013241)	ATP2A3 (ENSPNAG00000013329)	camkk1a (ENSPNAG00000013348)	p2rx1 (ENSPNAG00000013377)	ENSPNAG00000013393	ENSPNAG00000002732	sh3glb2b (ENSPNAG00000002785)	PIP5KL1 (ENSPNAG00000013549)	dpm2 (ENSPNAG00000013566)	eeig1b (ENSPNAG00000013632)	slc25a25b (ENSPNAG00000002899)	uap1l1 (ENSPNAG00000013743) ##22	zdhhc12b (ENSPNAG00000013755)	ENSPNAG00000013784	ENSPNAG00000013847	ENSPNAG00000002974	CIT (ENSPNAG00000002997)	RAB35 (ENSPNAG00000014046)	ENSPNAG00000014078	rplp0 (ENSPNAG00000014115)	rplp0 (ENSPNAG00000003031)	thnsl2 (ENSPNAG00000014170)	fabp1a (ENSPNAG00000003044)	smyd1a (ENSPNAG00000014243)	spra (ENSPNAG00000003062)	exosc2 (ENSPNAG00000014281)	ABL1 (ENSPNAG00000014319)
Mexicana tetra	MODERN SPECIES	111					ENSAMXG00000029952	ENSAMXG00000015618	camkk1a (ENSAMXG00000015563)	p2rx1 (ENSAMXG00000015519)	ENSAMXG00000015482	sh3glb2b (ENSAMXG00000015535)	PIP5KL1 (ENSAMXG00000038219)	ENSAMXG00000035171	dpm2 (ENSAMXG00000039909)	eeig1b (ENSAMXG00000015583)	slc25a25b (ENSAMXG00000032526)	uap1l1 (ENSAMXG00000031169) ##22	zdhhc12b (ENSAMXG00000038016)	ENSAMXG00000015680	ENSAMXG00000042517	ENSAMXG00000035590	CIT (ENSAMXG00000015739)	RAB35 (ENSAMXG00000040604)	rplp0 (ENSAMXG00000032613)	GUSB (ENSAMXG00000042392)	vkorc1l1 (ENSAMXG00000015856)	nupr1a (ENSAMXG00000024841)	dhx33 (ENSAMXG00000015875)	ca4a (ENSAMXG00000043073)	ENSAMXG00000024842	MTMR4 (ENSAMXG00000015899)	hpda (ENSAMXG00000015913)
Electric eel	MODERN SPECIES	151											sh3glb2b (ENSEEEG00000002545)	PIP5KL1 (ENSEEEG00000002529)	dpm2 (ENSEEEG00000002527)	eeig1b (ENSEEEG00000002521)	slc25a25b (ENSEEEG00000002519)	uap1l1 (ENSEEEG00000002515) ##22	zdhhc12b (ENSEEEG00000002513)	ENSEEEG00000002363	ENSEEEG00000002047	CIT (ENSEEEG00000002042)	RAB35 (ENSEEEG00000002040)	rplp0 (ENSEEEG00000002037)	dhx33 (ENSEEEG00000002030)	nupr1a (ENSEEEG00000002029)	vkorc1l1 (ENSEEEG00000002028)	GUSB (ENSEEEG00000002023)	ca4a (ENSEEEG00000002021)	MTMR4 (ENSEEEG00000000811)	hpda (ENSEEEG00000000413)	ENSEEEG00000000407	ENSEEEG00000000404
Cyprinoidei	ANCESTRAL SPECIES	19	ENSGT00940000155228	ENSGT00940000156179	ENSGT00940000160156	ENSGT00940000155045	ENSGT00940000155668.j	ENSGT00940000154890.a.a	ENSGT01020000230351.C	ENSGT00940000165424.a.b.a	ENSGT00940000167171	ENSGT00940000181433	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00390000015813.b.b	ENSGT00390000017134	ENSGT00940000156488.a.a	ENSGT00940000156133.a.b	ENSGT00940000155403.b	ENSGT00940000156430.b	ENSGT00550000074961.b	ENSGT00390000009566	ENSGT00940000158501.d.a	ENSGT00390000009869	ENSGT00940000159368.a	ENSGT00940000155845.t	ENSGT00420000029890
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES		ENSGT00390000005976.a.a.a.k	ENSGT00940000155228.a	ENSGT00940000156179.b	ENSGT00940000160156.d	ENSGT00940000155045.v.a	ENSGT00940000155668.j.a	ENSGT00940000154890.a.a.b	ENSGT01020000230351.C.c	ENSGT00940000167171	ENSGT00940000181433	ENSGT00940000155841.c.b.e	ENSGT00940000158633.a.i	ENSGT00390000001098.h	ENSGT00940000156811.b.a	ENSGT00940000157207.a.a.a	ENSGT00940000153464.A.a.a ##22	ENSGT00940000156902.b.b	ENSGT00940000164790.a.a	ENSGT00390000015813.b.b.a	ENSGT00390000017134.c	ENSGT00940000156488.a.a.b	ENSGT00940000156133.a.b.a.b	ENSGT00940000155403.b.a	ENSGT00940000156430.b.a	ENSGT00550000074961.b.a	ENSGT00390000009566.e	ENSGT00940000158501.d.a.b	ENSGT00390000009869.b	ENSGT00940000159368.a.e	ENSGT00940000155845.t.a	ENSGT00420000029890.b
Goldfish	MODERN SPECIES	44	ENSCARG00000002759	ZZEF1 (ENSCARG00000002886)	ATP2A3 (ENSCARG00000003755)	camkk1a (ENSCARG00000011296)	p2rx1 (ENSCARG00000011685)	ENSCARG00000011701	ENSCARG00000011709	sdhda (ENSCARG00000011713)	BCO2 (ENSCARG00000011743)	ENSCARG00000011913	sh3glb2b (ENSCARG00000011929)	PIP5KL1 (ENSCARG00000012168)	dpm2 (ENSCARG00000012183)	eeig1b (ENSCARG00000012202)	slc25a25b (ENSCARG00000012225)	uap1l1 (ENSCARG00000012362) ##22	zdhhc12b (ENSCARG00000012392)	ENSCARG00000012421	iscub (ENSCARG00000012601)	tmem119b (ENSCARG00000012608)	CORO1C (ENSCARG00000012623)	SSH1 (ENSCARG00000012661)	ENSCARG00000012671	ENSCARG00000012674	ENSCARG00000012682	ppp6c (ENSCARG00000012689)	SCAI (ENSCARG00000012706)	arpc5lb (ENSCARG00000012900)	ENSCARG00000012906	CABP7 (ENSCARG00000012947)	tescb (ENSCARG00000012951)
Cyprininae_a	ANCESTRAL SPECIES		ENSGT00390000005976.a.a.a.k	ENSGT00940000155228.a	ENSGT00940000156179.b	ENSGT00940000160156.d	ENSGT00940000155045.v.a	ENSGT00940000155668.j.a	ENSGT00940000154890.a.a.b	ENSGT01020000230351.C.c	ENSGT00940000167171	ENSGT00940000181433	ENSGT00940000155841.c.b.e	ENSGT00940000158633.a.i	ENSGT00390000001098.h	ENSGT00940000156811.b.a	ENSGT00940000157207.a.a.a	ENSGT00940000153464.A.a.a ##22	ENSGT00940000156902.b.b	ENSGT00940000164790.a.a	ENSGT00390000015813.b.b.a	ENSGT00390000017134.c	ENSGT00940000156488.a.a.b	ENSGT00940000156133.a.b.a.b	ENSGT00940000155403.b.a	ENSGT00940000156430.b.a	ENSGT00550000074961.b.a	ENSGT00390000009566.e	ENSGT00940000158501.d.a.b	ENSGT00390000009869.b	ENSGT00940000159368.a.e	ENSGT00940000155845.t.a	ENSGT00420000029890.b
Common carp reference	MODERN SPECIES	7	spns3 (ENSCCRG00000001109)	ube2g1a (ENSCCRG00000039970)	ankfy1 (ENSCCRG00000001041)	cyb5d2 (ENSCCRG00000050606)	ZZEF1 (ENSCCRG00000000855)	ATP2A3 (ENSCCRG00000082221)	p2rx1 (ENSCCRG00000043217)	camkk1a (ENSCCRG00000057115)	ENSCCRG00000073770	si:dkey-220k22.3 (ENSCCRG00000054177)	sh3glb2b (ENSCCRG00000001223)	PIP5KL1 (ENSCCRG00000001116)	dpm2 (ENSCCRG00000073177)	eeig1b (ENSCCRG00000045024)	slc25a25b (ENSCCRG00000035251)	uap1l1 (ENSCCRG00000035262) ##22	ENSCCRG00000043628	iscub (ENSCCRG00000079221)	tmem119b (ENSCCRG00000043610)	CORO1C (ENSCCRG00000066412)	SSH1 (ENSCCRG00000061259)	ENSCCRG00000043601	ENSCCRG00000013478	ENSCCRG00000058260	ENSCCRG00000022113	ppp6c (ENSCCRG00000015492)	SCAI (ENSCCRG00000015472)	ENSCCRG00000053489	arpc5lb (ENSCCRG00000063903)	zmat5 (ENSCCRG00000074583)	ENSCCRG00000013913
Golden-line barbel	MODERN SPECIES	91	SPNS2 (ENSSGRG00000011371)	spns3 (ENSSGRG00000011437)	ube2g1a (ENSSGRG00000011438)	ZZEF1 (ENSSGRG00000011466)	cyb5d2 (ENSSGRG00000012297)	ATP2A3 (ENSSGRG00000012298)	camkk1a (ENSSGRG00000012570)	p2rx1 (ENSSGRG00000012571)	ENSSGRG00000012573	ENSSGRG00000012576	sh3glb2b (ENSSGRG00000012578)	PIP5KL1 (ENSSGRG00000012733)	dpm2 (ENSSGRG00000012734)	eeig1b (ENSSGRG00000012735)	slc25a25b (ENSSGRG00000012736)	uap1l1 (ENSSGRG00000012887) ##22	zdhhc12b (ENSSGRG00000014406)	ENSSGRG00000012941	iscub (ENSSGRG00000014410)	tmem119b (ENSSGRG00000014411)	CORO1C (ENSSGRG00000014417)	ENSSGRG00000014783	ENSSGRG00000014912	ppp6c (ENSSGRG00000015311)	SCAI (ENSSGRG00000015473)	arpc5lb (ENSSGRG00000015477)	zmat5 (ENSSGRG00000015486)	CABP7 (ENSSGRG00000015487)	tescb (ENSSGRG00000015488)	m17 (ENSSGRG00000015489)	ENSSGRG00000015492
Cyprininae	ANCESTRAL SPECIES	48	ENSGT00940000178429	ENSGT00390000005976.a.a.a.l	ENSGT00940000155228.b	ENSGT00940000156179.a	ENSGT00940000160156.c	ENSGT00940000155045.v.b	ENSGT00940000155668.j.b	ENSGT00940000154890.a.a.a	ENSGT01020000230351.C.d	ENSGT00940000165424.a.b.a	ENSGT00940000155841.c.b.f	ENSGT00940000158633.a.j	ENSGT00390000001098.g	ENSGT00940000156811.b.b	ENSGT00940000157207.a.a.b	ENSGT00940000153464.A.a.b ##22	ENSGT00940000156902.b.a	ENSGT00940000164790.a.b	ENSGT00390000015813.b.b.b	ENSGT00390000017134.d	ENSGT00940000156488.a.a.a	ENSGT00940000156133.a.b.a.a	ENSGT00940000155403.b.b	ENSGT00390000003405.r	ENSGT00940000156430.b.b	ENSGT00550000074961.b.b	ENSGT00390000009566.f	ENSGT00940000158501.d.a.a	ENSGT00390000009869.a	ENSGT00940000159368.a.f	ENSGT00940000155845.t.b
Goldfish	MODERN SPECIES	23	ENSCARG00000042186	B3GNT3 (ENSCARG00000042616)	ENSCARG00000042625	LONRF1 (ENSCARG00000042637)	ENSCARG00000042675	ENSCARG00000042689	ENSCARG00000042700	camkk1a (ENSCARG00000042736)	p2rx1 (ENSCARG00000043008)	ENSCARG00000043089	sh3glb2b (ENSCARG00000043320)	PIP5KL1 (ENSCARG00000047006)	dpm2 (ENSCARG00000047012)	eeig1b (ENSCARG00000047028)	slc25a25b (ENSCARG00000047062)	uap1l1 (ENSCARG00000047496) ##22	zdhhc12b (ENSCARG00000047654)	ENSCARG00000047714	iscub (ENSCARG00000048000)	tmem119b (ENSCARG00000048056)	CORO1C (ENSCARG00000048091)	SSH1 (ENSCARG00000048309)	ENSCARG00000048542	ENSCARG00000023674	ENSCARG00000023889	ppp6c (ENSCARG00000023960)	SCAI (ENSCARG00000024008)	arpc5lb (ENSCARG00000024105)	zmat5 (ENSCARG00000024113)	CABP7 (ENSCARG00000024119)	mblac2 (ENSCARG00000024128)
Cyprininae_a	ANCESTRAL SPECIES	22	ENSGT00940000178429	ENSGT00390000005976.a.a.a.l	ENSGT00940000155228.b	ENSGT00940000156179.a	ENSGT00940000160156.c	ENSGT00940000155045.v.b	ENSGT00940000155668.j.b	ENSGT00940000154890.a.a.a	ENSGT01020000230351.C.d	ENSGT00940000165424.a.b.a	ENSGT00940000155841.c.b.f	ENSGT00940000158633.a.j	ENSGT00390000001098.g	ENSGT00940000156811.b.b	ENSGT00940000157207.a.a.b	ENSGT00940000153464.A.a.b ##22	ENSGT00940000156902.b.a	ENSGT00940000164790.a.b	ENSGT00390000015813.b.b.b	ENSGT00390000017134.d	ENSGT00940000156488.a.a.a	ENSGT00940000156133.a.b.a.a	ENSGT00940000155403.b.b	ENSGT00390000003405.r.a	ENSGT00940000156430.b.b	ENSGT00550000074961.b.b	ENSGT00390000009566.f	ENSGT00940000158501.d.a.a	ENSGT00390000009869.a	ENSGT00940000159368.a.f	ENSGT00940000155845.t.b
Golden-line barbel	MODERN SPECIES	11	SPNS2 (ENSSGRG00000015047)	spns3 (ENSSGRG00000014973)	ube2g1a (ENSSGRG00000014972)	ankfy1 (ENSSGRG00000014947)	cyb5d2 (ENSSGRG00000014946)	ZZEF1 (ENSSGRG00000014910)	ATP2A3 (ENSSGRG00000010484)	camkk1a (ENSSGRG00000010402)	p2rx1 (ENSSGRG00000010400)	ENSSGRG00000010399	sh3glb2b (ENSSGRG00000009964)	PIP5KL1 (ENSSGRG00000009959)	dpm2 (ENSSGRG00000009955)	eeig1b (ENSSGRG00000009954)	ENSSGRG00000009952	uap1l1 (ENSSGRG00000009948) ##22	zdhhc12b (ENSSGRG00000009947)	iscub (ENSSGRG00000009945)	ENSSGRG00000008073	tmem119b (ENSSGRG00000008027)	CORO1C (ENSSGRG00000007775)	SSH1 (ENSSGRG00000007759)	ENSSGRG00000007683	ENSSGRG00000007674	ENSSGRG00000007672	ppp6c (ENSSGRG00000007638)	SCAI (ENSSGRG00000007582)	arpc5lb (ENSSGRG00000007551)	zmat5 (ENSSGRG00000007548)	ENSSGRG00000007547	tescb (ENSSGRG00000007539)
Common carp reference	MODERN SPECIES	15	ube2g1a (ENSCCRG00000050674)	spns3 (ENSCCRG00000050665)	ankfy1 (ENSCCRG00000050616)	cyb5d2 (ENSCCRG00000073193)	ZZEF1 (ENSCCRG00000050513)	ATP2A3 (ENSCCRG00000063567)	camkk1a (ENSCCRG00000001072)	p2rx1 (ENSCCRG00000001092)	ENSCCRG00000054493	ENSCCRG00000067899	sh3glb2b (ENSCCRG00000082497)	PIP5KL1 (ENSCCRG00000001277)	dpm2 (ENSCCRG00000001124)	eeig1b (ENSCCRG00000073349)	slc25a25b (ENSCCRG00000072555)	uap1l1 (ENSCCRG00000043788) ##22	zdhhc12b (ENSCCRG00000075169)	ENSCCRG00000035274	iscub (ENSCCRG00000078158)	tmem119b (ENSCCRG00000078981)	CORO1C (ENSCCRG00000042332)	SSH1 (ENSCCRG00000042301)	ENSCCRG00000071765	ENSCCRG00000080749	ENSCCRG00000027480	ENSCCRG00000070021	ENSCCRG00000064453	arpc5lb (ENSCCRG00000080558)	zmat5 (ENSCCRG00000013915)	ENSCCRG00000072451	tescb (ENSCCRG00000013896)
Zebrafish	MODERN SPECIES	20	spns3 (ENSDARG00000035459)	ube2g1a (ENSDARG00000015292)	ankfy1 (ENSDARG00000061013)	cyb5d2 (ENSDARG00000061006)	ZZEF1 (ENSDARG00000094380)	ATP2A3 (ENSDARG00000060978)	camkk1a (ENSDARG00000035452)	p2rx1 (ENSDARG00000016695)	ENSDARG00000035471	si:dkey-220k22.3 (ENSDARG00000094693)	sh3glb2b (ENSDARG00000035470)	PIP5KL1 (ENSDARG00000060946)	dpm2 (ENSDARG00000095623)	eeig1b (ENSDARG00000016866)	slc25a25b (ENSDARG00000035468)	uap1l1 (ENSDARG00000013082) ##22	zdhhc12b (ENSDARG00000052787)	ENSDARG00000079585	iscub (ENSDARG00000026582)	tmem119b (ENSDARG00000068036)	CORO1C (ENSDARG00000021193)	SSH1 (ENSDARG00000010031)	ENSDARG00000014951	UNG (ENSDARG00000094922)	ENSDARG00000078603	ppp6c (ENSDARG00000002949)	SCAI (ENSDARG00000060865)	arpc5lb (ENSDARG00000035433)	zmat5 (ENSDARG00000035434)	CABP7 (ENSDARG00000060846)	tescb (ENSDARG00000030839)
Euteleosteomorpha	ANCESTRAL SPECIES	15	ENSGT00940000160918	ENSGT00940000153601.a.a.e.b.a	ENSGT00940000156235.c.a	ENSGT01020000230412.A.c.a	ENSGT00390000008220	ENSGT00940000154043.A.j.b	ENSGT00390000006287	ENSGT00390000004067	ENSGT00390000005742.x	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000156662.d	ENSGT00530000063497.a.a	ENSGT00940000163205.d	ENSGT00940000166931	ENSGT00940000161345	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT01020000230351.D.a.a.a	ENSGT01020000230351.D.a.a.b	ENSGT00940000163205.c	ENSGT00940000156340.a.c	ENSGT00530000063156.a.a.b
Acanthomorphata	ANCESTRAL SPECIES	82	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000157955.d.a	ENSGT00940000160616	ENSGT00940000154079.b	ENSGT00940000155946.c.b
Euacanthomorphacea	ANCESTRAL SPECIES	54	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000157955.d.a	ENSGT00940000160616	ENSGT00940000154079.b	ENSGT00940000155946.c.b
Percomorphaceae	ANCESTRAL SPECIES	42	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000154079.b	ENSGT00940000155946.c.b	ENSGT00930000151016	ENSGT00950000183101.a.b.b.a.b
Percomorphaceae_B	ANCESTRAL SPECIES	16	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000177239	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000154079.b	ENSGT00940000155946.c.b	ENSGT00930000151016	ENSGT00950000183101.a.b.b.a.b
Ovalentaria	ANCESTRAL SPECIES	16	ENSGT00390000000642	ENSGT00940000155945.i.a	ENSGT00940000157955.d.a	ENSGT00940000153391.c.b.a.j.b	ENSGT00940000157419	ENSGT00940000159990	ENSGT00940000156261	ENSGT00940000178133	ENSGT00950000183101.a.b.b.a.b	ENSGT00930000151016	ENSGT00940000155946.c.b	ENSGT00940000154079.b	ENSGT00530000063156.a.a.a	ENSGT00440000038585.c	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579
Atherinomorphae	ANCESTRAL SPECIES	74										ENSGT00950000183101.a.b.b.a.b	ENSGT00930000151016	ENSGT00940000154079.b	ENSGT00530000063156.a.a.a	ENSGT00440000038585.c	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00390000007918
Cyprinodontiformes	ANCESTRAL SPECIES	27	ENSGT00530000066485	ENSGT00390000012898	ENSGT01050000244924.a.a.a	ENSGT00940000156729	ENSGT00390000002634.a.f.b.a.a.a	ENSGT00940000156466	ENSGT01030000234908	ENSGT00510000049239.b.a	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00530000063156.a.a.a	ENSGT00440000038585.c	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00390000007918	ENSGT00940000156340.a.d	ENSGT00940000165669	ENSGT00390000009566	ENSGT00530000063497.a.a	ENSGT00940000156662.d.f	ENSGT00940000158483	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579
Cyprinodontoidei	ANCESTRAL SPECIES	33	ENSGT00500000044904.a.b.e.a.l.d.b.a.b.a.b.a	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00500000044904.a.b.e.a.l.d.a.a.a.b	ENSGT00500000044904.a.b.e.a.l.d.b.b.a	ENSGT00500000044904.a.b.e.a.l.d.a.a.a.a	ENSGT00500000044904.a.b.e.a.l.d.b.b.b	ENSGT00500000044904.a.b.e.a.l.d.a.a.b	ENSGT00530000063156.a.a.a	ENSGT00440000038585.c	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00390000007918	ENSGT00940000156340.a.d	ENSGT00940000171469	ENSGT00940000167171	ENSGT00550000074961.a	ENSGT00390000009566	ENSGT00530000063497.a.a	ENSGT00940000156662.d.f	ENSGT00940000158483	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w
Poeciliinae	ANCESTRAL SPECIES	12	ENSGT00500000044904.a.b.e.a.l.c	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b.z	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00500000044904.a.b.e.a.l.d.a.a.a.b	ENSGT00500000044904.a.b.e.a.l.d.a.b	ENSGT00500000044904.a.b.e.a.l.d.b.b.a	ENSGT00500000044904.a.b.e.a.l.d.a.a.a.a	ENSGT00500000044904.a.b.e.a.l.d.b.b.b	ENSGT00500000044904.a.b.e.a.l.d.a.a.b	ENSGT00530000063156.a.a.a	ENSGT00440000038585.c	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a.g	ENSGT00940000164790.a.h	ENSGT00940000153877.a.a.b	ENSGT00390000007918	ENSGT00940000156340.a.d	ENSGT00940000167171	ENSGT00550000074961.a	ENSGT00390000009566	ENSGT00530000063497.a.a	ENSGT00940000156662.d.f	ENSGT00940000158483	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w
Poecilia	ANCESTRAL SPECIES	53	ENSGT00500000044904.a.b.e.a.l.c	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b.z	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00500000044904.a.b.e.a.l.d.a.a.a.b	ENSGT00500000044904.a.b.e.a.l.d.a.b	ENSGT00500000044904.a.b.e.a.l.d.b.b.a	ENSGT00500000044904.a.b.e.a.l.d.a.a.a.a	ENSGT00500000044904.a.b.e.a.l.d.b.b.b	ENSGT00500000044904.a.b.e.a.l.d.a.a.b	ENSGT00530000063156.a.a.a	ENSGT00440000038585.c	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a.g	ENSGT00940000153877.a.a.b	ENSGT00390000007918	ENSGT00940000156340.a.d	ENSGT00940000167171	ENSGT00550000074961.a	ENSGT00390000009566	ENSGT00530000063497.a.a	ENSGT00940000156662.d.f	ENSGT00940000158483	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c
NAME_6	ANCESTRAL SPECIES	102						ENSGT00500000044904.a.b.e.a.l.d.b.b.a.a	ENSGT00500000044904.a.b.e.a.l.d.a.b	ENSGT00500000044904.a.b.e.a.l.d.b.b.a.b	ENSGT00500000044904.a.b.e.a.l.d.a.a.a.a.a	ENSGT00500000044904.a.b.e.a.l.d.a.a.a.a.b	ENSGT00500000044904.a.b.e.a.l.d.b.b.b	ENSGT00500000044904.a.b.e.a.l.d.a.a.b	ENSGT00530000063156.a.a.a	ENSGT00440000038585.c	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a.g	ENSGT00940000153877.a.a.b	ENSGT00390000007918	ENSGT00940000156340.a.d	ENSGT00390000009566	ENSGT00530000063497.a.a	ENSGT00940000156662.d.f	ENSGT00940000158483	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503
Sailfin molly	MODERN SPECIES	788									ENSPLAG00000018499	ENSPLAG00000018516	ENSPLAG00000018524	ENSPLAG00000018528	derl2 (ENSPLAG00000018551)	smarcb1b (ENSPLAG00000018556)	slc25a25b (ENSPLAG00000018590)	uap1l1 (ENSPLAG00000018625) ##22	zdhhc12b (ENSPLAG00000018670)	ENSPLAG00000018684	setb (ENSPLAG00000000580)	skp2 (ENSPLAG00000018697)	MMP11 (ENSPLAG00000018706)	PPP6C (ENSPLAG00000018741)	SCAI (ENSPLAG00000018780)	ODF2 (ENSPLAG00000018793)	ENSPLAG00000018806	ENSPLAG00000018828	ENSPLAG00000018835	ENSPLAG00000000428	ENSPLAG00000018865	dync2i2 (ENSPLAG00000018879)	ENSPLAG00000018888
Amazon molly	MODERN SPECIES	985										ENSPFOG00000022760	ENSPFOG00000020556	ENSPFOG00000020557	derl2 (ENSPFOG00000018746)	smarcb1b (ENSPFOG00000018757)	slc25a25b (ENSPFOG00000018777)	uap1l1 (ENSPFOG00000018803) ##22	zdhhc12b (ENSPFOG00000018817)	ENSPFOG00000018832	setb (ENSPFOG00000018872)	skp2 (ENSPFOG00000018883)	MMP11 (ENSPFOG00000018895)	PPP6C (ENSPFOG00000018905)
Guppy	MODERN SPECIES	442	ENSPREG00000006339	capslb (ENSPREG00000006331)	ENSPREG00000006319	ENSPREG00000006303	lmbrd2b (ENSPREG00000006271)	ppp1r3b (ENSPREG00000006244)	ENSPREG00000006238	ENSPREG00000006233	ENSPREG00000006226	ENSPREG00000006221	ENSPREG00000006216	derl2 (ENSPREG00000006206)	ENSPREG00000006196	smarcb1b (ENSPREG00000006179)	SLC25A23 (ENSPREG00000006162)	uap1l1 (ENSPREG00000006147) ##22	zdhhc12b (ENSPREG00000006134)	ENSPREG00000006079	setb (ENSPREG00000006032)	ENSPREG00000005998	MMP11 (ENSPREG00000005982)	PPP6C (ENSPREG00000005967)	SCAI (ENSPREG00000005929)	ENSPREG00000005880	EFNA5 (ENSPREG00000005858)	PIGO (ENSPREG00000005809)	stoml2 (ENSPREG00000005792)	ENSPREG00000005759	ENSPREG00000005616	ENSPREG00000005565	ENSPREG00000005524
Platyfish	MODERN SPECIES	22	ENSXMAG00000024704	ENSXMAG00000006116	lmbrd2b (ENSXMAG00000001349)	ppp1r3b (ENSXMAG00000024801)	ENSXMAG00000025958	ENSXMAG00000019780	ENSXMAG00000021293	ENSXMAG00000025162	ENSXMAG00000019493	ENSXMAG00000019681	ENSXMAG00000029978	ENSXMAG00000025213	derl2 (ENSXMAG00000016828)	smarcb1b (ENSXMAG00000016803)	slc25a25b (ENSXMAG00000016773)	uap1l1 (ENSXMAG00000016749) ##22	zdhhc12b (ENSXMAG00000016743)	ENSXMAG00000026234	ENSXMAG00000022015	ENSXMAG00000013697	setb (ENSXMAG00000013718)	ENSXMAG00000013731	MMP11 (ENSXMAG00000013737)	PPP6C (ENSXMAG00000013741)	SCAI (ENSXMAG00000021091)	ENSXMAG00000026744	ENSXMAG00000021401	ODF2 (ENSXMAG00000008364)	ENSXMAG00000027933	ENSXMAG00000028933	ENSXMAG00000023116
NAME_4	ANCESTRAL SPECIES	93	ENSGT00500000044904.a.b.e.a.l.d.b.a.b.a.b.a	ENSGT00940000156466	ENSGT00510000049239.b.a	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00500000044904.a.b.e.a.l.d.a.a.a.b	ENSGT00500000044904.a.b.e.a.l.d.b.b.a	ENSGT00500000044904.a.b.e.a.l.d.a.a.a.a	ENSGT00500000044904.a.b.e.a.l.d.b.b.b	ENSGT00500000044904.a.b.e.a.l.d.a.a.b	ENSGT00530000063156.a.a.a	ENSGT00440000038585.c	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00390000007918	ENSGT00940000156340.a.d	ENSGT01060000248544.b	ENSGT00940000167171	ENSGT00550000074961.a	ENSGT00390000009566	ENSGT00530000063497.a.a	ENSGT00940000156662.d.f	ENSGT00940000158483	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w
Mummichog	MODERN SPECIES	271	capslb (ENSFHEG00000006310)	ENSFHEG00000006321	ENSFHEG00000006336	ENSFHEG00000006347	lmbrd2b (ENSFHEG00000006374)	ppp1r3b (ENSFHEG00000006380)	ENSFHEG00000006385	ENSFHEG00000006403	ENSFHEG00000006408	ENSFHEG00000006411	ENSFHEG00000006425	ENSFHEG00000006430	derl2 (ENSFHEG00000006458)	smarcb1b (ENSFHEG00000000172)	slc25a25b (ENSFHEG00000006493)	uap1l1 (ENSFHEG00000006503) ##22	zdhhc12b (ENSFHEG00000006516)	ENSFHEG00000006530	setb (ENSFHEG00000006560)	skp2 (ENSFHEG00000006566)	MMP11 (ENSFHEG00000006581)	PPP6C (ENSFHEG00000006612)	SCAI (ENSFHEG00000006745)	ODF2 (ENSFHEG00000006781)	ENSFHEG00000000185	ENSFHEG00000006868	ENSFHEG00000007094	dync2i2 (ENSFHEG00000007112)	nadk2 (ENSFHEG00000007202)	slc1a3b (ENSFHEG00000007262)	smyd1a (ENSFHEG00000007290)
Aplocheiloidei	ANCESTRAL SPECIES	338													ENSGT00530000063156.a.a.a	ENSGT00440000038585.c	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22
Turquoise killifish	MODERN SPECIES	1611	SPR (ENSNFUG00015002844)	SLC1A3B (ENSNFUG00015002661)	nadk2 (ENSNFUG00015002618)	DYNC2I1 (ENSNFUG00015002609)	sptan1 (ENSNFUG00015002171)	ODF2 (ENSNFUG00015002036)	SCAI (ENSNFUG00015001894)	PPP6C (ENSNFUG00015001829)	skp2 (ENSNFUG00015001788)	ENSNFUG00015001770	setb (ENSNFUG00015001763)	derl2 (ENSNFUG00015001746)	SMARCB1 (ENSNFUG00015001731)	ENSNFUG00015001728	slc25a25b (ENSNFUG00015001611)	uap1l1 (ENSNFUG00015001551) ##22	ppp1r3b (ENSNFUG00015001421)	LMBRD2B (ENSNFUG00015001319)	ENSNFUG00015001290	capslb (ENSNFUG00015001281)	HSDL2 (ENSNFUG00015001247)	PTBP3 (ENSNFUG00015000995)	UGCG (ENSNFUG00015000920)	ENSNFUG00015000911	MOCS2 (ENSNFUG00015000906)	ENSNFUG00015000720	ENSNFUG00015000623	slc25a46 (ENSNFUG00015000558)	ATP6V1G1 (ENSNFUG00015000529)	slc31a1 (ENSNFUG00015000519)	FKTN (ENSNFUG00015000481)
Oryzias	ANCESTRAL SPECIES	9	ENSGT00940000155945.i.a	ENSGT00940000157955.d.a	ENSGT00940000153391.c.b.a.j.b	ENSGT00940000157419	ENSGT00940000159990	ENSGT00940000156261	ENSGT01030000234542.b.b.a.a.a.a	ENSGT00940000157006	ENSGT00390000006096.a.b	ENSGT00940000157207.a.a	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000154079.b	ENSGT00930000151016	ENSGT00950000183101.a.b.b.a.b	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00390000007918	ENSGT00390000011873.f	ENSGT01030000234614.B.a.a.a.t	ENSGT00940000155591.j	ENSGT00950000182864.a.b.b.a.a.a	ENSGT00390000013415.a.b.jb
Oryzias_a	ANCESTRAL SPECIES	126											ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000154079.b	ENSGT00930000151016	ENSGT00950000183101.a.b.b.a.b	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a
Chinese medaka	MODERN SPECIES	343												derl2 (ENSOSIG00000021501)	ralgps1 (ENSOSIG00000021166)	fbxw2 (ENSOSIG00000021101)	ENSOSIG00000021100	uap1l1 (ENSOSIG00000021097) ##22	zdhhc12b (ENSOSIG00000021096)	ENSOSIG00000017902	setb (ENSOSIG00000017687)
Japanese Medaka HdrR	MODERN SPECIES	3	ppp2r2ab (ENSORLG00000012297)	gsna (ENSORLG00000012347)	stom (ENSORLG00000012366)	ENSORLG00000024043	ENSORLG00000022101	GTF3C4 (ENSORLG00000012377)	skp2 (ENSORLG00000012394)	str-3 (ENSORLG00000012407)	PPP6C (ENSORLG00000012437)	SCAI (ENSORLG00000012465)	ENSORLG00000012553	derl2 (ENSORLG00000012591)	ralgps1 (ENSORLG00000012614)	fbxw2 (ENSORLG00000012631)	ENSORLG00000012647	uap1l1 (ENSORLG00000012682) ##22	zdhhc12b (ENSORLG00000012692)	ENSORLG00000012736	setb (ENSORLG00000012750)	dync2i2 (ENSORLG00000012774)	ENSORLG00000012823	ENSORLG00000023290	ENSORLG00000029984	ENSORLG00000023857	ODF2 (ENSORLG00000012850)	SLC25A25 (ENSORLG00000012877)	hmgcs1 (ENSORLG00000012898)	tln1 (ENSORLG00000013042)	tpm2 (ENSORLG00000013079)	DENND1A (ENSORLG00000013124)	NEK6 (ENSORLG00000013149)
Oryzias_b	ANCESTRAL SPECIES	4	ENSGT00940000155945.i.a	ENSGT00940000157955.d.a	ENSGT00940000153391.c.b.a.j.b	ENSGT00940000157419	ENSGT00940000159990	ENSGT00940000156261	ENSGT01030000234542.b.b.a.a.a.a	ENSGT00940000157006	ENSGT00390000006096.a.b	ENSGT00940000157207.a.a	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000154079.b	ENSGT00930000151016	ENSGT00950000183101.a.b.b.a.b	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00390000007918	ENSGT00390000011873.f	ENSGT00940000160428.b.b	ENSGT01030000234614.B.a.a.a.t	ENSGT00940000155591.j	ENSGT00950000182864.a.b.b.a.a.a
Indian medaka	MODERN SPECIES	677															ENSOMEG00000019960	uap1l1 (ENSOMEG00000020003) ##22	zdhhc12b (ENSOMEG00000020031)	ENSOMEG00000020078	setb (ENSOMEG00000020148)	dync2i2 (ENSOMEG00000020274)	ENSOMEG00000020320	ENSOMEG00000020337	ENSOMEG00000020347	ENSOMEG00000020367	ODF2 (ENSOMEG00000020421)	SCAI (ENSOMEG00000000534)
Javanese ricefish	MODERN SPECIES	3	lmx1ba (ENSOJAG00000003410)	ENSOJAG00000003418	nr5a1b (ENSOJAG00000003424)	psmb7 (ENSOJAG00000003441)	NEK6 (ENSOJAG00000003578)	DENND1A (ENSOJAG00000004452)	tpm2 (ENSOJAG00000005132)	tln1 (ENSOJAG00000005590)	hmgcs1 (ENSOJAG00000007951)	slc25a25b (ENSOJAG00000008215)	smarcb1b (ENSOJAG00000008974)	derl2 (ENSOJAG00000009021)	ralgps1 (ENSOJAG00000009088)	fbxw2 (ENSOJAG00000009386)	ENSOJAG00000009406	uap1l1 (ENSOJAG00000009419) ##22	zdhhc12b (ENSOJAG00000009441)	ENSOJAG00000009570	setb (ENSOJAG00000010833)	dync2i2 (ENSOJAG00000010843)	ENSOJAG00000015391	SCAI (ENSOJAG00000015411)	ppp6c (ENSOJAG00000015594)	MMP11 (ENSOJAG00000015610)	skp2 (ENSOJAG00000015640)	GTF3C4 (ENSOJAG00000015654)	barhl1a (ENSOJAG00000015664)	stom (ENSOJAG00000015697)	gsna (ENSOJAG00000015905)	ppp2r2ab (ENSOJAG00000017346)	bnip3lb (ENSOJAG00000018109)
Ovalentaria_B	ANCESTRAL SPECIES	14												ENSGT01060000248556.A.a.a.a.b.a.b	ENSGT00530000063156.a.a.a	ENSGT00440000038585.c	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579
Pomacentridae	ANCESTRAL SPECIES	69												ENSGT01060000248556.A.a.a.a.b.a.b.k	ENSGT00530000063156.a.a.a	ENSGT00440000038585.c	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579
Pomacentridae_A	ANCESTRAL SPECIES	46	ENSGT00390000005782	ENSGT00940000157873	ENSGT00940000156579	ENSGT00940000159053	ENSGT00940000157484	ENSGT00940000160540	ENSGT00940000153947.A	ENSGT00550000074872	ENSGT01050000244857.C.b.g	ENSGT00940000157703	ENSGT00390000000642	ENSGT01060000248556.A.a.a.a.b.a.b.k	ENSGT00530000063156.a.a.a	ENSGT00440000038585.c	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579
Amphiprion	ANCESTRAL SPECIES	41	ENSGT00940000157873	ENSGT00940000156579	ENSGT00940000159053	ENSGT00940000157484	ENSGT00940000160540	ENSGT00940000153947.A	ENSGT00550000074872	ENSGT01050000244857.C.b.g	ENSGT00940000157703	ENSGT00390000000642	ENSGT01060000248556.A.a.a.a.b.a.b.k.a	ENSGT01060000248556.A.a.a.a.b.a.b.k.b	ENSGT00530000063156.a.a.a	ENSGT00440000038585.c	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b.e	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579
Orange clownfish	MODERN SPECIES	7	reep5 (ENSAPEG00000013643)	chd1 (ENSAPEG00000013544)	syk (ENSAPEG00000013443)	auh (ENSAPEG00000013419)	nfil3 (ENSAPEG00000013392)	ROR2 (ENSAPEG00000013355)	sptlc1 (ENSAPEG00000013308)	chsy3 (ENSAPEG00000013296)	megf10 (ENSAPEG00000013210)	MAPKAP1 (ENSAPEG00000013160)	crata (ENSAPEG00000012956)	crata (ENSAPEG00000012815)	derl2 (ENSAPEG00000012753)	smarcb1b (ENSAPEG00000012703)	slc25a25b (ENSAPEG00000012664)	uap1l1 (ENSAPEG00000012589) ##22	zdhhc12b (ENSAPEG00000012574)	ENSAPEG00000012555	setb (ENSAPEG00000012509)	dync2i2 (ENSAPEG00000012474)	sptan1 (ENSAPEG00000012321)	ODF2 (ENSAPEG00000012298)	SCAI (ENSAPEG00000012227)	ppp6c (ENSAPEG00000012178)	MMP11 (ENSAPEG00000012144)	skp2 (ENSAPEG00000012017)	nadk2 (ENSAPEG00000011928)	slc1a3b (ENSAPEG00000011901)	spra (ENSAPEG00000011895)	smyd1a (ENSAPEG00000011859)	DQX1 (ENSAPEG00000011785)
Clown anemonefish	MODERN SPECIES	1674										MAPKAP1 (ENSAOCG00000003777)	crata (ENSAOCG00000003747)	crata (ENSAOCG00000003681)	derl2 (ENSAOCG00000003672)	smarcb1b (ENSAOCG00000003660)	slc25a25b (ENSAOCG00000003646)	uap1l1 (ENSAOCG00000022515) ##22	ENSAOCG00000022482	zdhhc12b (ENSAOCG00000022466)	ENSAOCG00000022439	setb (ENSAOCG00000022410)	dync2i2 (ENSAOCG00000022383)	sptan1 (ENSAOCG00000022310)	ODF2 (ENSAOCG00000022175)	SCAI (ENSAOCG00000022088)	ppp6c (ENSAOCG00000021985)
Spiny chromis	MODERN SPECIES	3122																uap1l1 (ENSAPOG00000008661) ##22	ENSAPOG00000000223
Bicolor damselfish	MODERN SPECIES	538	ENSSPAG00000004651	ablim3 (ENSSPAG00000004625)	ENSSPAG00000004388	ENSSPAG00000004340	ENSSPAG00000004302	rfc2 (ENSSPAG00000004272)	USP11 (ENSSPAG00000004185)	ENSSPAG00000004154	ENSSPAG00000004120	IQSEC2 (ENSSPAG00000004074)	crata (ENSSPAG00000003694)	derl2 (ENSSPAG00000003626)	smarcb1b (ENSSPAG00000003595)	ENSSPAG00000003579	ENSSPAG00000003548	uap1l1 (ENSSPAG00000003523) ##22
Cichlidae	ANCESTRAL SPECIES	98														ENSGT00940000177772	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00390000007918	ENSGT00390000006320
Pseudocrenilabrinae	ANCESTRAL SPECIES	24	ENSGT00940000166544.a	ENSGT00950000183041.C	ENSGT00940000154856.B.c	ENSGT00940000155657	ENSGT00410000025802	ENSGT00390000003837	ENSGT00940000159700	ENSGT00940000155742.a.a	ENSGT00530000063851.b	ENSGT00390000016543.d	ENSGT00390000000642	ENSGT00940000155945.i.a	ENSGT00940000157955.d.a	ENSGT00940000177772	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000157703	ENSGT01050000244857.C.b	ENSGT00550000074872	ENSGT00940000153947.A
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	34	ENSGT00940000166544.a	ENSGT00950000183041.C	ENSGT00940000154856.B.c	ENSGT00940000155657	ENSGT00410000025802	ENSGT00390000003837	ENSGT00940000159700	ENSGT00940000155742.a.a	ENSGT00530000063851.b	ENSGT00390000016543.d	ENSGT00390000000642	ENSGT00940000155945.i.a	ENSGT00940000157955.d.a	ENSGT00940000177772	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000157703	ENSGT01050000244857.C.b	ENSGT00550000074872	ENSGT00940000153947.A
Haplochromini	ANCESTRAL SPECIES	40	ENSGT00940000166544.a	ENSGT00950000183041.C	ENSGT00940000154856.B.c	ENSGT00940000155657	ENSGT00410000025802	ENSGT00390000003837	ENSGT00940000159700	ENSGT00940000155742.a.a	ENSGT00530000063851.b	ENSGT00390000016543.d	ENSGT00390000000642	ENSGT00940000155945.i.a	ENSGT00940000157955.d.a	ENSGT00940000177772	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000157703	ENSGT01050000244857.C.b	ENSGT00550000074872	ENSGT00940000153947.A.i.b
Burton s mouthbrooder	MODERN SPECIES	371	vcanb (ENSHBUG00000000730)	xrcc4 (ENSHBUG00000001108)	zcchc9 (ENSHBUG00000007612)	ENSHBUG00000007447	wdr45 (ENSHBUG00000007433)	ENSHBUG00000007395	prrc1 (ENSHBUG00000007388)	slc27a6 (ENSHBUG00000007344)	slc12a2 (ENSHBUG00000000179)	ENSHBUG00000007147	ENSHBUG00000007140	MAPKAP1 (ENSHBUG00000007136)	mvb12ba (ENSHBUG00000000174)	lmx1ba (ENSHBUG00000007069)	slc25a25b (ENSHBUG00000007042)	uap1l1 (ENSHBUG00000006938) ##22	ENSHBUG00000006964	zdhhc12b (ENSHBUG00000006929)	setb (ENSHBUG00000006916)	dync2i2 (ENSHBUG00000006874)	sptan1 (ENSHBUG00000006842)	ODF2 (ENSHBUG00000006753)	SCAI (ENSHBUG00000006704)	ppp6c (ENSHBUG00000006644)	ENSHBUG00000006617	skp2 (ENSHBUG00000006588)	nadk2 (ENSHBUG00000006565)	megf10 (ENSHBUG00000006507)	chsy3 (ENSHBUG00000006410)	sptlc1 (ENSHBUG00000006377)	ENSHBUG00000006311
Haplochromini_A	ANCESTRAL SPECIES	25	ENSGT00940000166544.a	ENSGT00950000183041.C	ENSGT00940000154856.B.c	ENSGT00940000155657	ENSGT00410000025802	ENSGT00390000003837	ENSGT00940000159700	ENSGT00940000155742.a.a	ENSGT00530000063851.b	ENSGT00390000016543.d	ENSGT00390000000642	ENSGT00940000155945.i.a	ENSGT00940000157955.d.a	ENSGT00940000177772	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000157703	ENSGT01050000244857.C.b	ENSGT00550000074872	ENSGT00940000153947.A.i.b
P. nyererei	MODERN SPECIES	629										AJM1 (ENSPNYG00000023521)	MAPKAP1 (ENSPNYG00000023522)	mvb12ba (ENSPNYG00000023524)	lmx1ba (ENSPNYG00000023527)	ENSPNYG00000023531	slc25a25b (ENSPNYG00000023533)	uap1l1 (ENSPNYG00000023536) ##22	zdhhc12b (ENSPNYG00000023539)	ENSPNYG00000023541	setb (ENSPNYG00000023543)	dync2i2 (ENSPNYG00000023548)	sptan1 (ENSPNYG00000023554)	ODF2 (ENSPNYG00000023558)	SCAI (ENSPNYG00000023559)	ppp6c (ENSPNYG00000023561)	MMP11 (ENSPNYG00000023563)	skp2 (ENSPNYG00000023565)	nadk2 (ENSPNYG00000023568)	megf10 (ENSPNYG00000023573)	chsy3 (ENSPNYG00000023578)	sptlc1 (ENSPNYG00000023581)	ENSPNYG00000023583
Haplochromini_B	ANCESTRAL SPECIES	30	ENSGT00940000166544.a	ENSGT00950000183041.C	ENSGT00940000154856.B.c	ENSGT00940000155657	ENSGT00410000025802	ENSGT00390000003837	ENSGT00940000159700	ENSGT00940000155742.a.a	ENSGT00530000063851.b	ENSGT00390000016543.d	ENSGT00390000000642	ENSGT00940000155945.i.a	ENSGT00940000157955.d.a	ENSGT00940000177772	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000157703	ENSGT01050000244857.C.b	ENSGT00550000074872	ENSGT00940000153947.A.i.b
Eastern happy	MODERN SPECIES	19	xrcc4 (ENSACLG00000009039)	zcchc9 (ENSACLG00000009042)	ENSACLG00000009062	wdr45 (ENSACLG00000009075)	ENSACLG00000009129	prrc1 (ENSACLG00000009140)	ENSACLG00000009180	slc27a6 (ENSACLG00000009188)	slc12a2 (ENSACLG00000009245)	ENSACLG00000009572	ENSACLG00000009576	MAPKAP1 (ENSACLG00000010709)	mvb12ba (ENSACLG00000010732)	lmx1ba (ENSACLG00000010749)	slc25a25b (ENSACLG00000010882)	uap1l1 (ENSACLG00000010989) ##22	zdhhc12b (ENSACLG00000011023)	ENSACLG00000011039	setb (ENSACLG00000011081)	dync2i2 (ENSACLG00000011111)	sptan1 (ENSACLG00000011141)	ODF2 (ENSACLG00000011802)	SCAI (ENSACLG00000011846)	ppp6c (ENSACLG00000011968)	MMP11 (ENSACLG00000012009)	skp2 (ENSACLG00000012087)	nadk2 (ENSACLG00000012117)	megf10 (ENSACLG00000012182)	chsy3 (ENSACLG00000012339)	sptlc1 (ENSACLG00000012367)	ENSACLG00000012407
Lyretail cichlid	MODERN SPECIES	339	ENSNBRG00000005187	zcchc9 (ENSNBRG00000005258)	ENSNBRG00000005329	wdr45 (ENSNBRG00000005357)	ENSNBRG00000005392	prrc1 (ENSNBRG00000005405)	slc27a6 (ENSNBRG00000005438)	slc12a2 (ENSNBRG00000005525)	ENSNBRG00000005591	AJM1 (ENSNBRG00000005613)	MAPKAP1 (ENSNBRG00000005632)	mvb12ba (ENSNBRG00000005661)	lmx1ba (ENSNBRG00000005716)	ENSNBRG00000005726	slc25a25b (ENSNBRG00000005737)	uap1l1 (ENSNBRG00000005773) ##22	zdhhc12b (ENSNBRG00000005893)	ENSNBRG00000005923	setb (ENSNBRG00000005989)	dync2i2 (ENSNBRG00000006020)	ENSNBRG00000006052	ENSNBRG00000006065	ENSNBRG00000006072	ODF2 (ENSNBRG00000006082)	SCAI (ENSNBRG00000006140)	ppp6c (ENSNBRG00000006193)	MMP11 (ENSNBRG00000006233)	skp2 (ENSNBRG00000006265)	nadk2 (ENSNBRG00000006379)	megf10 (ENSNBRG00000006568)	chsy3 (ENSNBRG00000006648)
Nile tilapia	MODERN SPECIES	19	ENSONIG00000011363	prrc1 (ENSONIG00000011358)	slc27a6 (ENSONIG00000011351)	slc12a2 (ENSONIG00000011322)	ENSONIG00000027177	ENSONIG00000017491	pomk (ENSONIG00000017496)	ENSONIG00000040459	ENSONIG00000032452	PAM (ENSONIG00000017497)	AJM1 (ENSONIG00000031602)	MAPKAP1 (ENSONIG00000011314)	mvb12ba (ENSONIG00000011310)	lmx1ba (ENSONIG00000011305)	slc25a25b (ENSONIG00000011301)	uap1l1 (ENSONIG00000011298) ##22	zdhhc12 (ENSONIG00000027386)	ENSONIG00000011289	setb (ENSONIG00000011282)	dync2i2 (ENSONIG00000011279)	sptan1 (ENSONIG00000011270)	ODF2 (ENSONIG00000011262)	SCAI (ENSONIG00000011257)	ppp6c (ENSONIG00000037191)	MMP11 (ENSONIG00000011252)	skp2 (ENSONIG00000011248)	nadk2 (ENSONIG00000011244)	megf10 (ENSONIG00000011235)	chsy3 (ENSONIG00000011233)	sptlc1 (ENSONIG00000011229)	ROR2 (ENSONIG00000011228)
Midas cichlid	MODERN SPECIES	1323															slc25a25b (ENSACIG00000002733)	uap1l1 (ENSACIG00000002770) ##22	zdhhc12b (ENSACIG00000002790)	ENSACIG00000002821	setb (ENSACIG00000002868)	dync2i2 (ENSACIG00000002888)	sptan1 (ENSACIG00000002938)	ODF2 (ENSACIG00000003059)	SCAI (ENSACIG00000003105)	ppp6c (ENSACIG00000003144)	MMP11 (ENSACIG00000003165)	skp2 (ENSACIG00000003189)
Percomorphaceae_C	ANCESTRAL SPECIES	17	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000177239	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000177772	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000154079.b	ENSGT00940000155946.c.b	ENSGT00930000151016	ENSGT00950000183101.a.b.b.a.b
Eupercaria	ANCESTRAL SPECIES	13	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000177239	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000177772	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000154079.b	ENSGT00940000155946.c.b	ENSGT00930000151016	ENSGT00950000183101.a.b.b.a.b
Tetraodontidae	ANCESTRAL SPECIES	88											ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00450000040324.b.n	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000157419	ENSGT00940000156261	ENSGT00950000183101.a.b.b.a.b	ENSGT00930000151016	ENSGT00940000154079.b	ENSGT00530000063156.a.a.a	ENSGT00440000038585.c
Fugu	MODERN SPECIES	18	sptlc1 (ENSTRUG00000012471)	mvb12ba (ENSTRUG00000012699)	zer1 (ENSTRUG00000012793)	TBC1D13 (ENSTRUG00000012856)	DQX1 (ENSTRUG00000012911)	smyd1a (ENSTRUG00000013032)	spra (ENSTRUG00000013101)	slc1a3b (ENSTRUG00000013124)	skp2 (ENSTRUG00000021483)	sh3glb2b (ENSTRUG00000013419)	ENSTRUG00000027632	ENSTRUG00000030413	dpm2 (ENSTRUG00000013567)	naif1 (ENSTRUG00000013589)	slc25a25b (ENSTRUG00000013603)	uap1l1 (ENSTRUG00000013698) ##22	zdhhc12b (ENSTRUG00000013790)	ENSTRUG00000013819	setb (ENSTRUG00000013980)	dync2i2 (ENSTRUG00000014025)	sptan1 (ENSTRUG00000014072)	SCAI (ENSTRUG00000014341)	ppp6c (ENSTRUG00000014295)	psmb7 (ENSTRUG00000014190)	phyhd1 (ENSTRUG00000031352)	DENND1A (ENSTRUG00000014090)	ENSTRUG00000014027	fbxw2 (ENSTRUG00000013978)	ralgps1 (ENSTRUG00000013875)	derl2 (ENSTRUG00000024229)	SMARCB1 (ENSTRUG00000013792)
Tetraodon	MODERN SPECIES	26	bfsp2 (ENSTNIG00000003071)	ccr9a (ENSTNIG00000003072)	ENSTNIG00000003073	opn4.1 (ENSTNIG00000003074)	ENSTNIG00000003075	CDY1 (ENSTNIG00000003076)	rpp40 (ENSTNIG00000003077)	riok1 (ENSTNIG00000003078)	ENSTNIG00000000713	impa1 (ENSTNIG00000003079)	ENSTNIG00000003080	ENSTNIG00000000735	zgc:55781 (ENSTNIG00000001323)	tmub1 (ENSTNIG00000003081)	ENSTNIG00000002343	uap1l1 (ENSTNIG00000003082) ##22	zdhhc12b (ENSTNIG00000002180)	ENSTNIG00000003083	pofut1 (ENSTNIG00000003103)	KIF1C (ENSTNIG00000003106)	PCMTD2 (ENSTNIG00000003104)	MYT1 (ENSTNIG00000003105)	ENSTNIG00000000168	ENSTNIG00000003107	ENSTNIG00000000254	ENSTNIG00000003108	ENSTNIG00000003109	fgb (ENSTNIG00000003110)	ENSTNIG00000003111	CNGA1 (ENSTNIG00000003112)	ENSTNIG00000000336
Eupecaria_A	ANCESTRAL SPECIES	14	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000177239	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000177772	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000154079.b	ENSGT00940000155946.c.b	ENSGT00930000151016	ENSGT00950000183101.a.b.b.a.b
Ballan wrasse	MODERN SPECIES	140	slc1a3b (ENSLBEG00000020724)	SPR (ENSLBEG00000020615)	spra (ENSLBEG00000020590)	smyd1a (ENSLBEG00000020550)	DQX1 (ENSLBEG00000020503)	thnsl2 (ENSLBEG00000020440)	TBC1D13 (ENSLBEG00000020403)	zer1 (ENSLBEG00000020358)	sh3glb2b (ENSLBEG00000020325)	PIP5KL1 (ENSLBEG00000020240)	dpm2 (ENSLBEG00000020174)	eeig1b (ENSLBEG00000020139)	naif1 (ENSLBEG00000020119)	ENSLBEG00000020105	slc25a25b (ENSLBEG00000020076)	uap1l1 (ENSLBEG00000020043) ##22	zdhhc12b (ENSLBEG00000019981)	ENSLBEG00000019912	setb (ENSLBEG00000019863)	dync2i2 (ENSLBEG00000019826)	sptan1 (ENSLBEG00000019669)	ODF2 (ENSLBEG00000019603)	SCAI (ENSLBEG00000019544)	ppp6c (ENSLBEG00000019494)	MMP11 (ENSLBEG00000019474)	smarcb1b (ENSLBEG00000019421)	derl2 (ENSLBEG00000019394)
Eupecaria_B	ANCESTRAL SPECIES	14	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000177239	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000154079.b	ENSGT00940000155946.c.b	ENSGT00930000151016	ENSGT00950000183101.a.b.b.a.b
Perciformes	ANCESTRAL SPECIES	32	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000177239	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a
Cottioidei	ANCESTRAL SPECIES	31	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00530000064469	ENSGT00390000005782	ENSGT00390000004945	ENSGT00940000156369
Lumpfish	MODERN SPECIES	3	fpgs (ENSCLMG00005013201)	skp2 (ENSCLMG00005013187)	nadk2 (ENSCLMG00005013184)	slc1a3b (ENSCLMG00005013183)	spra (ENSCLMG00005013182)	smyd1a (ENSCLMG00005013180)	DQX1 (ENSCLMG00005013177)	thnsl2 (ENSCLMG00005013174)	TBC1D13 (ENSCLMG00005013171)	zer1 (ENSCLMG00005013170)	sh3glb2b (ENSCLMG00005013145)	PIP5KL1 (ENSCLMG00005013144)	dpm2 (ENSCLMG00005013143)	naif1 (ENSCLMG00005013142)	slc25a25b (ENSCLMG00005012030)	uap1l1 (ENSCLMG00005012007) ##22	zdhhc12b (ENSCLMG00005012004)	ENSCLMG00005006823	setb (ENSCLMG00005006788)	dync2i2 (ENSCLMG00005006786)	sptan1 (ENSCLMG00005005989)	ENSCLMG00005005970	ENSCLMG00005005969	ODF2 (ENSCLMG00005005664)	SCAI (ENSCLMG00005005420)	PPP6C (ENSCLMG00005005416)	MMP11 (ENSCLMG00005005414)	PAM (ENSCLMG00005004210)	pomk (ENSCLMG00005004207)	macir (ENSCLMG00005004206)	ENSCLMG00005004205
Stickleback	MODERN SPECIES	13	skp2 (ENSGACG00000018512)	nadk2 (ENSGACG00000018510)	slc1a3b (ENSGACG00000018505)	spra (ENSGACG00000018502)	ENSGACG00000018499	DQX1 (ENSGACG00000018495)	thnsl2 (ENSGACG00000018492)	TBC1D13 (ENSGACG00000018486)	zer1 (ENSGACG00000018482)	sh3glb2b (ENSGACG00000018470)	PIP5KL1 (ENSGACG00000018468)	dpm2 (ENSGACG00000018462)	eeig1b (ENSGACG00000018460)	naif1 (ENSGACG00000018458)	slc25a25b (ENSGACG00000018446)	uap1l1 (ENSGACG00000018441) ##22	zdhhc12b (ENSGACG00000018437)	ENSGACG00000018428	setb (ENSGACG00000018427)	dync2i2 (ENSGACG00000018424)	ENSGACG00000018423	sptan1 (ENSGACG00000018404)	ODF2 (ENSGACG00000018403)	SCAI (ENSGACG00000018402)	ppp6c (ENSGACG00000018399)	MMP11 (ENSGACG00000018397)	smarcb1b (ENSGACG00000018395)	derl2 (ENSGACG00000018394)	ENSGACG00000018393	ENSGACG00000018388	macir (ENSGACG00000018385)
Perciformes_a	ANCESTRAL SPECIES	12	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000177239	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a
Pike perch	MODERN SPECIES	72	nadk2 (ENSSLUG00000020541)	slc1a3b (ENSSLUG00000020645)	spra (ENSSLUG00000020673)	smyd1a (ENSSLUG00000020688)	DQX1 (ENSSLUG00000020733)	thnsl2 (ENSSLUG00000020748)	TBC1D13 (ENSSLUG00000020760)	zer1 (ENSSLUG00000020829)	SH3GLB2 (ENSSLUG00000020861)	ENSSLUG00000020886	PIP5KL1 (ENSSLUG00000020888)	dpm2 (ENSSLUG00000020891)	eeig1b (ENSSLUG00000020896)	naif1 (ENSSLUG00000020899)	slc25a25b (ENSSLUG00000020955)	uap1l1 (ENSSLUG00000021860) ##22	zdhhc12b (ENSSLUG00000021865)	ENSSLUG00000001849	setb (ENSSLUG00000002592)	dync2i2 (ENSSLUG00000002600)	sptan1 (ENSSLUG00000002800)	ODF2 (ENSSLUG00000006042)	derl2 (ENSSLUG00000006051)	SMARCB1 (ENSSLUG00000006060)	ppp6c (ENSSLUG00000006082)	SCAI (ENSSLUG00000006150)	PAM (ENSSLUG00000006851)	pomk (ENSSLUG00000007790)
Eupecaria_C	ANCESTRAL SPECIES	9	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000155946.c.b	ENSGT00940000154079.b	ENSGT00930000151016	ENSGT00950000183101.a.b.b.a.b
Gilthead seabream	DUPLICATION
Gilthead seabream	MODERN SPECIES	3	smyd1a (ENSSAUG00010024497)	DQX1 (ENSSAUG00010024484)	thnsl2 (ENSSAUG00010024480)	TBC1D13 (ENSSAUG00010024460)	zer1 (ENSSAUG00010024446)	sh3glb2b (ENSSAUG00010024434)	ENSSAUG00010024432	PIP5KL1 (ENSSAUG00010024431)	dpm2 (ENSSAUG00010024430)	eeig1b (ENSSAUG00010024428)	naif1 (ENSSAUG00010024427)	ENSSAUG00010024426	slc25a25b (ENSSAUG00010024395)	uap1l1 (ENSSAUG00010024391) ##22	slc25a25b (ENSSAUG00010024388)	uap1l1 (ENSSAUG00010024386) ##22	zdhhc12b (ENSSAUG00010024384)	ENSSAUG00010022795	setb (ENSSAUG00010022693)	dync2i2 (ENSSAUG00010022677)	sptan1 (ENSSAUG00010022637)	ODF2 (ENSSAUG00010022606)	SCAI (ENSSAUG00010022449)	ppp6c (ENSSAUG00010022438)	MMP11 (ENSSAUG00010022437)	smarcb1b (ENSSAUG00010022435)	derl2 (ENSSAUG00010022432)	ENSSAUG00010021889	ENSSAUG00010021852	ralgps1 (ENSSAUG00010021810)	fbxw2 (ENSSAUG00010021793)
Gilthead seabream	MODERN SPECIES	3	slc1a3b (ENSSAUG00010024506)	spra (ENSSAUG00010024499)	smyd1a (ENSSAUG00010024497)	DQX1 (ENSSAUG00010024484)	thnsl2 (ENSSAUG00010024480)	TBC1D13 (ENSSAUG00010024460)	zer1 (ENSSAUG00010024446)	sh3glb2b (ENSSAUG00010024434)	ENSSAUG00010024432	PIP5KL1 (ENSSAUG00010024431)	dpm2 (ENSSAUG00010024430)	eeig1b (ENSSAUG00010024428)	naif1 (ENSSAUG00010024427)	ENSSAUG00010024426	slc25a25b (ENSSAUG00010024395)	uap1l1 (ENSSAUG00010024391) ##22	slc25a25b (ENSSAUG00010024388)	uap1l1 (ENSSAUG00010024386) ##22	zdhhc12b (ENSSAUG00010024384)	ENSSAUG00010022795	setb (ENSSAUG00010022693)	dync2i2 (ENSSAUG00010022677)	sptan1 (ENSSAUG00010022637)	ODF2 (ENSSAUG00010022606)	SCAI (ENSSAUG00010022449)	ppp6c (ENSSAUG00010022438)	MMP11 (ENSSAUG00010022437)	smarcb1b (ENSSAUG00010022435)	derl2 (ENSSAUG00010022432)	ENSSAUG00010021889	ENSSAUG00010021852
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	6	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000155946.c.b	ENSGT00940000154079.b	ENSGT00930000151016	ENSGT00950000183101.a.b.b.a.b
Large yellow croaker	MODERN SPECIES		ENSLCRG00005007324	ENSLCRG00005007323	ENSLCRG00005007322	nifk (ENSLCRG00005007317)	clasp1a (ENSLCRG00005003217)	tfcp2l1 (ENSLCRG00005002060)	ENSLCRG00005002008	ENSLCRG00005001637	inhbb (ENSLCRG00005001583)	ENSLCRG00005001566	slc10a2 (ENSLCRG00005001550)	gtpbp8 (ENSLCRG00005001536)	ENSLCRG00005001521	efnb2a (ENSLCRG00005001511)	arglu1a (ENSLCRG00005001497)	uap1l1 (ENSLCRG00005001461) ##22	zdhhc12b (ENSLCRG00005023435)	ENSLCRG00005023415	setb (ENSLCRG00005023412)	dync2i2 (ENSLCRG00005023410)	sptan1 (ENSLCRG00005023399)	ODF2 (ENSLCRG00005023382)	SCAI (ENSLCRG00005023378)	ppp6c (ENSLCRG00005023374)	MMP11 (ENSLCRG00005023372)	smarcb1b (ENSLCRG00005023360)	derl2 (ENSLCRG00005023358)	ENSLCRG00005023345	angptl2a (ENSLCRG00005023341)	ralgps1 (ENSLCRG00005023340)	fbxw2 (ENSLCRG00005023339)
European seabass	MODERN SPECIES	9	ENSDLAG00005029405	SLC1A3 (ENSDLAG00005013579)	ENSDLAG00005028733	ENSDLAG00005013882	ENSDLAG00005013885	ENSDLAG00005014014	ENSDLAG00005014084	ENSDLAG00005014089	ENSDLAG00005014115	ENSDLAG00005014170	PIP5KL1 (ENSDLAG00005028420)	dpm2 (ENSDLAG00005029824)	eeig1b (ENSDLAG00005014575)	NAIF1 (ENSDLAG00005027321)	slc25a25b (ENSDLAG00005030118)	uap1l1 (ENSDLAG00005004297) ##22	zdhhc12b (ENSDLAG00005004355)	ENSDLAG00005004547	setb (ENSDLAG00005010991)	dync2i2 (ENSDLAG00005033129)	sptan1 (ENSDLAG00005007570)	ODF2 (ENSDLAG00005009791)	ENSDLAG00005009820	ENSDLAG00005031144	ENSDLAG00005009963	ENSDLAG00005010024	ENSDLAG00005010086	ENSDLAG00005011315	ENSDLAG00005011403	ENSDLAG00005011408	ENSDLAG00005011480
Percomorphaceae_D	ANCESTRAL SPECIES	15	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000177239	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000177772	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000154079.b	ENSGT00940000155946.c.b	ENSGT00930000151016	ENSGT00950000183101.a.b.b.a.b
Anabantaria	ANCESTRAL SPECIES	12	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000177239	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000154079.b	ENSGT00940000155946.c.b	ENSGT00930000151016	ENSGT00950000183101.a.b.b.a.b
Zig-zag eel	MODERN SPECIES	3	ENSMAMG00000022619	SLC1A3 (ENSMAMG00000022626)	ENSMAMG00000022629	ENSMAMG00000022631	ENSMAMG00000022633	ENSMAMG00000022638	ENSMAMG00000022639	ENSMAMG00000022644	ENSMAMG00000022645	ENSMAMG00000022646	PIP5KL1 (ENSMAMG00000022647)	dpm2 (ENSMAMG00000022648)	eeig1b (ENSMAMG00000022649)	NAIF1 (ENSMAMG00000024944)	slc25a25b (ENSMAMG00000022651)	uap1l1 (ENSMAMG00000022652) ##22	ENSMAMG00000022654	setb (ENSMAMG00000022655)	dync2i2 (ENSMAMG00000022658)	sptan1 (ENSMAMG00000022659)	ODF2 (ENSMAMG00000022664)	ENSMAMG00000022666	ENSMAMG00000022668	ENSMAMG00000022669	ENSMAMG00000022671	ENSMAMG00000022672	ENSMAMG00000022674	ENSMAMG00000024754	ENSMAMG00000022679	ENSMAMG00000022682	CRB2 (ENSMAMG00000022685)
Anabantoidei	ANCESTRAL SPECIES	32	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000177239	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000157199	ENSGT00940000154412.A	ENSGT00390000003837	ENSGT00940000161073
Siamese fighting fish	MODERN SPECIES	3	macir (ENSBSLG00000004788)	skp2 (ENSBSLG00000004815)	nadk2 (ENSBSLG00000004864)	slc1a3b (ENSBSLG00000004994)	SPR (ENSBSLG00000005403)	smyd1a (ENSBSLG00000005418)	DQX1 (ENSBSLG00000005461)	thnsl2 (ENSBSLG00000005584)	TBC1D13 (ENSBSLG00000005628)	zer1 (ENSBSLG00000005752)	SH3GLB2 (ENSBSLG00000005922)	PIP5KL1 (ENSBSLG00000005983)	dpm2 (ENSBSLG00000005988)	naif1 (ENSBSLG00000005992)	slc25a25b (ENSBSLG00000006008)	uap1l1 (ENSBSLG00000006347) ##22	zdhhc12b (ENSBSLG00000006393)	ENSBSLG00000006801	setb (ENSBSLG00000007574)	dync2i2 (ENSBSLG00000007585)	SCAI (ENSBSLG00000007810)	ENSBSLG00000008025	BRCC3 (ENSBSLG00000008033)	RAB27B (ENSBSLG00000008042)	TCF4 (ENSBSLG00000008105)	ENSBSLG00000009210	ENSBSLG00000009217	ENSBSLG00000009220	ENSBSLG00000009233	ENSBSLG00000009240	ENSBSLG00000009247
Climbing perch	MODERN SPECIES	13	ENSATEG00000009252	SLC1A3 (ENSATEG00000009294)	ENSATEG00000009318	ENSATEG00000009333	ENSATEG00000009375	ENSATEG00000009386	TBC1D13 (ENSATEG00000009405)	ENSATEG00000009465	ENSATEG00000009529	ENSATEG00000027150	PIP5KL1 (ENSATEG00000009568)	dpm2 (ENSATEG00000025188)	eeig1b (ENSATEG00000009622)	NAIF1 (ENSATEG00000009671)	slc25a25b (ENSATEG00000028871)	uap1l1 (ENSATEG00000009749) ##22	zdhhc12b (ENSATEG00000029454)	ENSATEG00000009853	setb (ENSATEG00000009873)	dync2i2 (ENSATEG00000009904)	sptan1 (ENSATEG00000009938)	ODF2 (ENSATEG00000010104)	ENSATEG00000010138	ENSATEG00000010188	ENSATEG00000025171	ENSATEG00000010245	ENSATEG00000028789	ENSATEG00000010319	CTXN3 (ENSATEG00000010357)	ENSATEG00000010370	ENSATEG00000010405
Carangaria	ANCESTRAL SPECIES	17	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000177772	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000155946.c.b	ENSGT00940000154079.b	ENSGT00930000151016	ENSGT00950000183101.a.b.b.a.b
Pleuronectoidei	ANCESTRAL SPECIES	7	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000177772	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b	ENSGT00390000005989.b.b	ENSGT00940000154704.c.c	ENSGT00410000025802	ENSGT00940000155657	ENSGT00940000161915.b	ENSGT00940000156732.a.a
Tongue sole	MODERN SPECIES	5	ENSCSEG00000018702	PURG (ENSCSEG00000018750)	slc38a9 (ENSCSEG00000018757)	nrg1 (ENSCSEG00000018793)	thnsl2 (ENSCSEG00000018800)	TBC1D13 (ENSCSEG00000018804)	zer1 (ENSCSEG00000018807)	SH3GLB2 (ENSCSEG00000018823)	PIP5KL1 (ENSCSEG00000018827)	dpm2 (ENSCSEG00000018834)	eeig1b (ENSCSEG00000018847)	naif1 (ENSCSEG00000018859)	ENSCSEG00000018864	slc25a25b (ENSCSEG00000018870)	ENSCSEG00000018876	uap1l1 (ENSCSEG00000018880) ##22	zdhhc12b (ENSCSEG00000018890)	ENSCSEG00000018901	ENSCSEG00000018914	setb (ENSCSEG00000018916)	DQX1 (ENSCSEG00000018927)	smyd1a (ENSCSEG00000018953)	spra (ENSCSEG00000018960)	slc1a3b (ENSCSEG00000018965)	nadk2 (ENSCSEG00000018982)	skp2 (ENSCSEG00000018994)	ENSCSEG00000019026	ENSCSEG00000019051	macir (ENSCSEG00000019056)	phpt1 (ENSCSEG00000019061)	ENSCSEG00000019065
Turbot	MODERN SPECIES	7	ENSSMAG00000010679	SLC1A3 (ENSSMAG00000010635)	ENSSMAG00000010630	ENSSMAG00000010620	ENSSMAG00000010612	ENSSMAG00000010595	ENSSMAG00000010558	ENSSMAG00000010520	ENSSMAG00000010445	ENSSMAG00000010377	PIP5KL1 (ENSSMAG00000010364)	dpm2 (ENSSMAG00000031774)	eeig1b (ENSSMAG00000010278)	NAIF1 (ENSSMAG00000010261)	slc25a25b (ENSSMAG00000010217)	uap1l1 (ENSSMAG00000010208) ##22	zdhhc12b (ENSSMAG00000010199)	ENSSMAG00000010189	SET (ENSSMAG00000010018)	dync2i2 (ENSSMAG00000010007)	SPTAN1 (ENSSMAG00000009496)	ODF2 (ENSSMAG00000009452)	ENSSMAG00000009433	kctd9b (ENSSMAG00000009386)	ENSSMAG00000028483	ENSSMAG00000009342	stc1l (ENSSMAG00000009300)	ENSSMAG00000009265	ENSSMAG00000034455	wdr45 (ENSSMAG00000009227)	ENSSMAG00000009215
Carangaria_A	ANCESTRAL SPECIES	43	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000155946.c.b	ENSGT00940000154079.b	ENSGT00930000151016	ENSGT00950000183101.a.b.b.a.b
Barramundi perch	MODERN SPECIES	228	zer1 (ENSLCAG00010011470)	TBC1D13 (ENSLCAG00010011679)	thnsl2 (ENSLCAG00010011728)	DQX1 (ENSLCAG00010011740)	macir (ENSLCAG00010011742)	cdk9 (ENSLCAG00010011745)	sptlc1 (ENSLCAG00010011757)	ROR2 (ENSLCAG00010011848)	ENSLCAG00010011858	nfil3 (ENSLCAG00010011862)	auh (ENSLCAG00010011865)	syk (ENSLCAG00010011881)	chd1 (ENSLCAG00010012142)	reep5 (ENSLCAG00010013112)	slc25a25b (ENSLCAG00010013135)	uap1l1 (ENSLCAG00010013191) ##22	zdhhc12b (ENSLCAG00010013195)	ENSLCAG00010013196	setb (ENSLCAG00010013204)	dync2i2 (ENSLCAG00010013209)	sptan1 (ENSLCAG00010013217)	ENSLCAG00010013235	ODF2 (ENSLCAG00010013237)	SCAI (ENSLCAG00010013254)	ppp6c (ENSLCAG00010013388)	MMP11 (ENSLCAG00010013394)	smarcb1b (ENSLCAG00010013407)	derl2 (ENSLCAG00010013425)	ENSLCAG00010013447	ralgps1 (ENSLCAG00010013452)	angptl2a (ENSLCAG00010013457)
Seriola	ANCESTRAL SPECIES	33	ENSGT00390000007918	ENSGT00390000006320	ENSGT00940000155464.a.a	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000159579	ENSGT00940000158503	ENSGT00940000158674	ENSGT00530000063187.A	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b	ENSGT00450000040324.b.n	ENSGT00940000157207.a.a	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000153877.a.a.b	ENSGT00940000158483	ENSGT00940000156662.d.f	ENSGT00530000063497.a.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000156340.a.d	ENSGT00440000038585.c	ENSGT00530000063156.a.a.a	ENSGT00940000155946.c.b	ENSGT00940000154079.b	ENSGT00930000151016	ENSGT00950000183101.a.b.b.a.b
Greater amberjack	MODERN SPECIES	34	nadk2 (ENSSDUG00000020851)	slc1a3b (ENSSDUG00000020831)	spra (ENSSDUG00000020820)	SPR (ENSSDUG00000020797)	smyd1a (ENSSDUG00000020775)	DQX1 (ENSSDUG00000020759)	thnsl2 (ENSSDUG00000020743)	TBC1D13 (ENSSDUG00000020716)	zer1 (ENSSDUG00000020653)	sh3glb2b (ENSSDUG00000020624)	ENSSDUG00000020616	PIP5KL1 (ENSSDUG00000020594)	dpm2 (ENSSDUG00000020574)	eeig1b (ENSSDUG00000020536)	naif1 (ENSSDUG00000020525)	uap1l1 (ENSSDUG00000020442) ##22	zdhhc12b (ENSSDUG00000020411)	ENSSDUG00000020309	setb (ENSSDUG00000020263)	dync2i2 (ENSSDUG00000020218)	sptan1 (ENSSDUG00000020131)	ODF2 (ENSSDUG00000020101)	SCAI (ENSSDUG00000020037)	ppp6c (ENSSDUG00000020000)	MMP11 (ENSSDUG00000019979)	smarcb1b (ENSSDUG00000019943)	derl2 (ENSSDUG00000019927)	ENSSDUG00000019917	ENSSDUG00000019909	angptl2a (ENSSDUG00000019900)	ralgps1 (ENSSDUG00000019795)
Yellowtail amberjack	MODERN SPECIES	3288	skp2 (ENSSLDG00000022852)	nadk2 (ENSSLDG00000022818)	slc1a3b (ENSSLDG00000022764)	spra (ENSSLDG00000022750)	smyd1a (ENSSLDG00000022726)	DQX1 (ENSSLDG00000022712)	thnsl2 (ENSSLDG00000022667)	TBC1D13 (ENSSLDG00000022620)	zer1 (ENSSLDG00000022562)	sh3glb2b (ENSSLDG00000022495)	PIP5KL1 (ENSSLDG00000022435)	dpm2 (ENSSLDG00000022422)	eeig1b (ENSSLDG00000022396)	naif1 (ENSSLDG00000022387)	slc25a25b (ENSSLDG00000022345)	uap1l1 (ENSSLDG00000022312) ##22	zdhhc12b (ENSSLDG00000022302)	ENSSLDG00000022274	setb (ENSSLDG00000022255)	dync2i2 (ENSSLDG00000022199)	sptan1 (ENSSLDG00000022130)	ODF2 (ENSSLDG00000022094)	SCAI (ENSSLDG00000022050)	ppp6c (ENSSLDG00000022033)	MMP11 (ENSSLDG00000022020)	smarcb1b (ENSSLDG00000021986)	derl2 (ENSSLDG00000021972)	ENSSLDG00000021963	ENSSLDG00000021951	angptl2a (ENSSLDG00000021944)	ralgps1 (ENSSLDG00000021826)
Pinecone sodierfish	MODERN SPECIES	3	skp2 (ENSMMDG00005001483)	nadk2 (ENSMMDG00005001427)	slc1a3b (ENSMMDG00005001407)	spra (ENSMMDG00005001403)	smyd1a (ENSMMDG00005001394)	DQX1 (ENSMMDG00005001377)	thnsl2 (ENSMMDG00005001365)	TBC1D13 (ENSMMDG00005001336)	zer1 (ENSMMDG00005001304)	sh3glb2b (ENSMMDG00005001246)	PIP5KL1 (ENSMMDG00005001215)	dpm2 (ENSMMDG00005001197)	eeig1b (ENSMMDG00005025047)	naif1 (ENSMMDG00005025046)	slc25a25b (ENSMMDG00005025045)	uap1l1 (ENSMMDG00005025044) ##22	zdhhc12b (ENSMMDG00005025043)	ENSMMDG00005024910	setb (ENSMMDG00005024909)	dync2i2 (ENSMMDG00005024903)	sptan1 (ENSMMDG00005024759)	ODF2 (ENSMMDG00005024754)	SCAI (ENSMMDG00005024753)	ppp6c (ENSMMDG00005024752)	ENSMMDG00005024751	smarcb1b (ENSMMDG00005024750)	derl2 (ENSMMDG00005024749)	ENSMMDG00005024748	ENSMMDG00005024747	cfap53 (ENSMMDG00005024746)	myo5b (ENSMMDG00005023295)
Cod	MODERN SPECIES	17	ENSGMOG00000009024	SKP2 (ENSGMOG00000009001)	ENSGMOG00000008985	SLC1A3 (ENSGMOG00000008977)	ENSGMOG00000008971	ENSGMOG00000025503	ENSGMOG00000008923	ENSGMOG00000008912	ENSGMOG00000008899	ENSGMOG00000008881	ENSGMOG00000008863	PIP5KL1 (ENSGMOG00000008847)	dpm2 (ENSGMOG00000023612)	NAIF1 (ENSGMOG00000008831)	slc25a25b (ENSGMOG00000008812)	uap1l1 (ENSGMOG00000008793) ##22	zdhhc12b (ENSGMOG00000008781)	ENSGMOG00000008752	ENSGMOG00000008739	dync2i2 (ENSGMOG00000008718)	SPTAN1 (ENSGMOG00000008663)	ODF2 (ENSGMOG00000008644)	ENSGMOG00000008631	ENSGMOG00000008624	ENSGMOG00000008614	ENSGMOG00000008607	ENSGMOG00000006711	ENSGMOG00000006730	CRB2 (ENSGMOG00000006738)	ENSGMOG00000006766	PSMB7 (ENSGMOG00000006798)
Protacanthopterygii	ANCESTRAL SPECIES	17	ENSGT00940000158674	ENSGT00940000177481	ENSGT00940000153181	ENSGT00440000038585.d	ENSGT00530000063156.a.a.b	ENSGT00940000156340.a.c	ENSGT00440000038585.c.c	ENSGT00940000156340.a.d	ENSGT00940000161345	ENSGT00940000166931	ENSGT00940000178900	ENSGT00530000063497.a.a	ENSGT00940000156662.d	ENSGT00940000158483	ENSGT00940000153877.a.a.b	ENSGT00940000153464.A.a ##22	ENSGT00940000156902.b	ENSGT00940000164790.a	ENSGT00940000157207.a.a	ENSGT00450000040324.b	ENSGT00940000156811.b	ENSGT00390000001098	ENSGT00940000158633.a	ENSGT00940000155841.c.b	ENSGT00940000165164.f	ENSGT00950000183190.a.b.b	ENSGT00390000005742.x	ENSGT00390000004067	ENSGT00390000006287	ENSGT00940000154043.A.j.b	ENSGT00390000008220
Salmoninae	ANCESTRAL SPECIES	134	ENSGT00390000009566.g	ENSGT00550000074961.b.d	ENSGT00390000000224.j	ENSGT00530000063187.A.h	ENSGT00940000158674.h	ENSGT00940000153181.m.a	ENSGT00440000038585.c.c	ENSGT00940000156340.a.d.c	ENSGT00940000161345.c	ENSGT00940000166931.f	ENSGT00940000178900	ENSGT00530000063497.a.a.d	ENSGT00940000156662.d.h.a	ENSGT00940000158483	ENSGT00940000153877.a.a.b.d	ENSGT00940000153464.A.a ##22
Huchen	MODERN SPECIES	847	p2rx4a (ENSHHUG00000049607)	ENSHHUG00000049667	PTGES2 (ENSHHUG00000049673)	zer1 (ENSHHUG00000049684)	TBC1D13 (ENSHHUG00000049778)	RALGDS (ENSHHUG00000049819)	smarcb1b (ENSHHUG00000049941)	ENSHHUG00000050319	chchd10 (ENSHHUG00000050323)	ddt (ENSHHUG00000050326)	ENSHHUG00000050330	ODF2 (ENSHHUG00000050332)	sptan1 (ENSHHUG00000050349)	dync2i2 (ENSHHUG00000050771)	setb (ENSHHUG00000050779)	ENSHHUG00000050793 ##22
Salmoninae_a	ANCESTRAL SPECIES	7	ENSGT00550000074961.b.d	ENSGT00390000000224.j	ENSGT00530000063187.A.h	ENSGT00940000158674.h	ENSGT00940000153181.m.a	ENSGT01000000220495	ENSGT00440000038585.c.c	ENSGT00940000156340.a.d.c	ENSGT00940000161345.c	ENSGT00940000166931.f	ENSGT00940000178900	ENSGT00530000063497.a.a.d	ENSGT00940000156662.d.h.a	ENSGT00940000158483	ENSGT00940000153877.a.a.b.d	ENSGT00940000153464.A.a ##22	ENSGT00940000164790.a	ENSGT00940000157207.a.a.g	ENSGT00450000040324.b.k	ENSGT00940000156811.b.c.b	ENSGT00730000111912.C.c	ENSGT00390000001098.i	ENSGT00940000158633.a.c	ENSGT00940000155841.c.b	ENSGT00940000165164.f	ENSGT00950000183190.a.b.b.c.a	ENSGT00950000183190.a.b.b.d	ENSGT00390000005742.x	ENSGT00390000004067	ENSGT00390000006287	ENSGT00940000154043.A.j.b.e
Oncorhynchus	ANCESTRAL SPECIES	19	ENSGT00550000074961.b.d	ENSGT00390000000224.j	ENSGT00530000063187.A.h	ENSGT00940000158674.h	ENSGT00940000153181.m.a	ENSGT00940000161345.c	ENSGT00940000156340.a.d.c	ENSGT00440000038585.c.c	ENSGT01000000220495	ENSGT00940000166931.f	ENSGT00940000178900	ENSGT00530000063497.a.a.d	ENSGT00940000156662.d.h.a	ENSGT00940000158483	ENSGT00940000153877.a.a.b.d	ENSGT00940000153464.A.a ##22	ENSGT00940000164790.a	ENSGT00940000157207.a.a.g	ENSGT00450000040324.b.k	ENSGT00940000156811.b.c.b	ENSGT00730000111912.C.c	ENSGT00390000001098.i	ENSGT00940000158633.a.c	ENSGT00940000155841.c.b	ENSGT00950000183190.a.b.b.c.a	ENSGT00390000005742.x	ENSGT00390000004067	ENSGT00390000006287	ENSGT00940000154043.A.j.b.e	ENSGT00390000008220.g	ENSGT00940000154856.B.d.a.a
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000043620	ENSOMYG00000050466	ENSOMYG00000043168	chchd10 (ENSOMYG00000076774)	ENSOMYG00000043280	ENSOMYG00000071467	smarcb1b (ENSOMYG00000043291)	ENSOMYG00000049969	ENSOMYG00000043299	ENSOMYG00000056974	ENSOMYG00000043338	ODF2 (ENSOMYG00000043316)	sptan1 (ENSOMYG00000043696)	dync2i2 (ENSOMYG00000044330)	setb (ENSOMYG00000044338)	ENSOMYG00000044345 ##22	ENSOMYG00000044443	slc25a25b (ENSOMYG00000044841)	NAIF1 (ENSOMYG00000000050)	eeig1b (ENSOMYG00000000140)	ENSOMYG00000000180	dpm2 (ENSOMYG00000000196)	PIP5KL1 (ENSOMYG00000030188)	ENSOMYG00000069215	sh3glb2b (ENSOMYG00000000535)	ENSOMYG00000073284	ENSOMYG00000000751	NUP188 (ENSOMYG00000001135)	dolk (ENSOMYG00000001419)	phyhd1 (ENSOMYG00000001455)	lrrc8aa (ENSOMYG00000001481)
Oncorhynchus_a	ANCESTRAL SPECIES	12	ENSGT00550000074961.b.d	ENSGT00390000000224.j	ENSGT00530000063187.A.h	ENSGT00940000158674.h	ENSGT00940000153181.m.a	ENSGT00940000161345.c	ENSGT00940000156340.a.d.c	ENSGT00440000038585.c.c	ENSGT01000000220495	ENSGT00940000166931.f	ENSGT00940000178900	ENSGT00530000063497.a.a.d	ENSGT00940000156662.d.h.a	ENSGT00940000158483	ENSGT00940000153877.a.a.b.d	ENSGT00940000153464.A.a ##22	ENSGT00940000164790.a	ENSGT00940000157207.a.a.g	ENSGT00450000040324.b.k	ENSGT00940000156811.b.c.b	ENSGT00980000199742	ENSGT00730000111912.C.c	ENSGT00390000001098.i	ENSGT00940000158633.a.c	ENSGT00940000155841.c.b	ENSGT00950000183190.a.b.b.d	ENSGT00390000005742.x	ENSGT00390000004067	ENSGT00390000006287	ENSGT00940000154043.A.j.b.e	ENSGT00390000008220.h
Coho salmon	MODERN SPECIES	15	ENSOKIG00005034668	PTGES2 (ENSOKIG00005034633)	zer1 (ENSOKIG00005034579)	TBC1D13 (ENSOKIG00005034529)	RALGDS (ENSOKIG00005034410)	chchd10 (ENSOKIG00005034380)	MMP11 (ENSOKIG00005034371)	smarcb1b (ENSOKIG00005034261)	ENSOKIG00005034238	ddt (ENSOKIG00005034222)	ENSOKIG00005034213	ODF2 (ENSOKIG00005034144)	sptan1 (ENSOKIG00005032233)	dync2i2 (ENSOKIG00005032060)	setb (ENSOKIG00005031970)	uap1l1 (ENSOKIG00005031899) ##22	ENSOKIG00005031476	SLC25A25 (ENSOKIG00005030466)	naif1 (ENSOKIG00005030315)	eeig1b (ENSOKIG00005030005)	ENSOKIG00005029980	ENSOKIG00005029971	dpm2 (ENSOKIG00005029944)	PIP5KL1 (ENSOKIG00005029891)	sh3glb2b (ENSOKIG00005029183)	ENSOKIG00005029120	cdk5rap2 (ENSOKIG00005029031)	ENSOKIG00005029015	NUP188 (ENSOKIG00005028144)	dolk (ENSOKIG00005028101)	phyhd1 (ENSOKIG00005027983)
Chinook salmon	MODERN SPECIES	12	p2rx4a (ENSOTSG00005047749)	ENSOTSG00005047750	PTGES2 (ENSOTSG00005047751)	zer1 (ENSOTSG00005047752)	TBC1D13 (ENSOTSG00005047753)	RALGDS (ENSOTSG00005009545)	chchd10 (ENSOTSG00005009548)	ENSOTSG00005009550	smarcb1b (ENSOTSG00005009552)	ddt (ENSOTSG00005009587)	ENSOTSG00005009589	ODF2 (ENSOTSG00005009590)	sptan1 (ENSOTSG00005009605)	dync2i2 (ENSOTSG00005012168)	setb (ENSOTSG00005012169)	uap1l1 (ENSOTSG00005012170) ##22	ENSOTSG00005012173	slc25a25b (ENSOTSG00005012870)	naif1 (ENSOTSG00005012878)	eeig1b (ENSOTSG00005012881)	ENSOTSG00005013126	dpm2 (ENSOTSG00005013127)	PIP5KL1 (ENSOTSG00005013128)	sh3glb2b (ENSOTSG00005013130)	srp9 (ENSOTSG00005014487)	ephx1 (ENSOTSG00005014490)	ENSOTSG00005014492	slc5a6a (ENSOTSG00005014515)	rpl7l1 (ENSOTSG00005015201)	NCOA1 (ENSOTSG00005015206)	NTNG2 (ENSOTSG00005015209)
Salmo	ANCESTRAL SPECIES		ENSGT00390000000224.j	ENSGT00530000063187.A.h	ENSGT00940000158674.h	ENSGT00940000153181.m.a	ENSGT01100000263505.b.b.a.b.a.a.a.b.a	ENSGT01000000220495	ENSGT00440000038585.c.c	ENSGT00940000156340.a.d.c	ENSGT00940000161345.c	ENSGT00940000166931.f	ENSGT00940000178900	ENSGT00530000063497.a.a.d	ENSGT00940000156662.d.h.a	ENSGT00940000158483	ENSGT00940000153877.a.a.b.d	ENSGT00940000153464.A.a ##22	ENSGT00940000164790.a	ENSGT00940000157207.a.a.g	ENSGT00450000040324.b.k	ENSGT00940000156811.b.c.b	ENSGT00730000111912.C.c	ENSGT00390000001098.i	ENSGT00940000158633.a.c	ENSGT00940000155841.c.b	ENSGT00940000165164.f	ENSGT00950000183190.a.b.b.c.a	ENSGT00950000183190.a.b.b.d	ENSGT00390000005742.x.a	ENSGT00390000004067	ENSGT00390000006287	ENSGT00940000154043.A.j.b.e
River trout	MODERN SPECIES	15	p2rx4a (ENSSTUG00000010155)	PTGES2 (ENSSTUG00000010131)	zer1 (ENSSTUG00000010071)	TBC1D13 (ENSSTUG00000009725)	RALGDS (ENSSTUG00000009533)	ENSSTUG00000009512	smarcb1b (ENSSTUG00000009408)	ENSSTUG00000009373	chchd10 (ENSSTUG00000009366)	ddt (ENSSTUG00000009355)	ENSSTUG00000009351	ODF2 (ENSSTUG00000009332)	sptan1 (ENSSTUG00000007588)	dync2i2 (ENSSTUG00000007316)	setb (ENSSTUG00000007186)	uap1l1 (ENSSTUG00000007122) ##22	ENSSTUG00000007108	ENSSTUG00000006984	slc25a25b (ENSSTUG00000006529)	naif1 (ENSSTUG00000006494)	ENSSTUG00000006491	eeig1b (ENSSTUG00000006445)	ENSSTUG00000006420	dpm2 (ENSSTUG00000006398)	PIP5KL1 (ENSSTUG00000006343)	sh3glb2b (ENSSTUG00000005677)	ENSSTUG00000005563	ENSSTUG00000005556	ENSSTUG00000005539	cdk5rap2 (ENSSTUG00000005443)	NUP188 (ENSSTUG00000004750)
Atlantic salmon	MODERN SPECIES		ENSSSAG00000114149	gnds (ENSSSAG00000063710)	ENSSSAG00000084890	ENSSSAG00000063690	ENSSSAG00000063684	smarcb1b (ENSSSAG00000063620)	ENSSSAG00000063600	chchd10 (ENSSSAG00000063591)	ENSSSAG00000110058	ddt (ENSSSAG00000063583)	ODF2 (ENSSSAG00000063563)	ENSSSAG00000085437	sptan1 (ENSSSAG00000056139)	dync2i2 (ENSSSAG00000056027)	setb (ENSSSAG00000071236)	ENSSSAG00000055850 ##22	ENSSSAG00000050742	slc25a25b (ENSSSAG00000067692)	NAIF1 (ENSSSAG00000086186)	ENSSSAG00000085653	eeig1b (ENSSSAG00000088028)	ENSSSAG00000047449	DPM2 (ENSSSAG00000047417)	PIP5KL1 (ENSSSAG00000116681)	ENSSSAG00000047400	sh3glb2b (ENSSSAG00000096134)	ENSSSAG00000117881	ENSSSAG00000046803	dolk (ENSSSAG00000086677)	nup188 (ENSSSAG00000040336)	ENSSSAG00000046753
Northern pike	MODERN SPECIES	13	gstt1 (ENSELUG00000020605)	zer1 (ENSELUG00000020710)	TBC1D13 (ENSELUG00000020798)	RALGDS (ENSELUG00000020865)	ENSELUG00000026357	ENSELUG00000027151	smarcb1b (ENSELUG00000020934)	MMP11 (ENSELUG00000020945)	chchd10 (ENSELUG00000020960)	ddt (ENSELUG00000032496)	ENSELUG00000020963	ODF2 (ENSELUG00000021056)	sptan1 (ENSELUG00000021139)	dync2i2 (ENSELUG00000021173)	setb (ENSELUG00000021202)	uap1l1 (ENSELUG00000021217) ##22	zdhhc12b (ENSELUG00000021228)	ENSELUG00000021353	slc25a25b (ENSELUG00000001110)	naif1 (ENSELUG00000021476)	eeig1b (ENSELUG00000021521)	dpm2 (ENSELUG00000021540)	PIP5KL1 (ENSELUG00000021638)	sh3glb2b (ENSELUG00000021863)	ENSELUG00000028060	cdk5rap2 (ENSELUG00000021996)	NUP188 (ENSELUG00000022080)	dolk (ENSELUG00000022101)	phyhd1 (ENSELUG00000022238)	lrrc8aa (ENSELUG00000034186)	dnlz (ENSELUG00000022274)
Spotted gar	MODERN SPECIES	660	ENSLOCG00000006369	ENSLOCG00000006357	aif1l (ENSLOCG00000006343)	NUP214 (ENSLOCG00000006323)	fam78ab (ENSLOCG00000006312)	plpp7a (ENSLOCG00000006288)	PRRC2B (ENSLOCG00000006253)	pomt1 (ENSLOCG00000006233)	uck1 (ENSLOCG00000006214)	sh3glb2b (ENSLOCG00000006193)	PIP5KL1 (ENSLOCG00000006176)	dpm2 (ENSLOCG00000006158)	eeig1b (ENSLOCG00000006144)	naif1 (ENSLOCG00000006120)	slc25a25a (ENSLOCG00000006102)	uap1l1 (ENSLOCG00000006083) ##22	zdhhc12a (ENSLOCG00000006071)	ENSLOCG00000006047	setb (ENSLOCG00000006027)	si:ch211-51h9.7 (ENSLOCG00000006014)	dync2i2 (ENSLOCG00000005989)	dync2i2 (ENSLOCG00000005978)	sptan1 (ENSLOCG00000005929)	gle1 (ENSLOCG00000005909)	odf2b (ENSLOCG00000005870)	ptgesl (ENSLOCG00000005855)	zer1 (ENSLOCG00000005833)	TBC1D13 (ENSLOCG00000005818)	ralgds (ENSLOCG00000005803)	cel.1 (ENSLOCG00000005785)	GTF3C5 (ENSLOCG00000005767)
Reedfish	MODERN SPECIES	17	phf19 (ENSECRG00000009173)	traf1 (ENSECRG00000009160)	fibcd1b (ENSECRG00000009083)	ENSECRG00000009055	PLPP7 (ENSECRG00000009044)	ENSECRG00000009034	pomt1 (ENSECRG00000008998)	uck1 (ENSECRG00000008969)	PRRT1B (ENSECRG00000008954)	sh3glb2b (ENSECRG00000008916)	PIP5KL1 (ENSECRG00000008873)	dpm2 (ENSECRG00000008853)	eeig1b (ENSECRG00000008830)	naif1 (ENSECRG00000008813)	slc25a23b (ENSECRG00000008759)	uap1l1 (ENSECRG00000008710) ##22	zdhhc12a (ENSECRG00000008689)	ENSECRG00000008621	setb (ENSECRG00000008570)	dync2i2 (ENSECRG00000008558)	sptan1 (ENSECRG00000008483)	ENSECRG00000008436	odf2b (ENSECRG00000008409)	ptgesl (ENSECRG00000008395)	zer1 (ENSECRG00000008379)	TBC1D13 (ENSECRG00000008362)	ENSECRG00000008346	ralgds (ENSECRG00000008311)	cel.1 (ENSECRG00000008266)	GTF3C5 (ENSECRG00000008234)	GFI1B (ENSECRG00000008218)
Sarcopterygii	ANCESTRAL SPECIES	74	ENSGT00390000016127	ENSGT00940000164889	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00510000050587	ENSGT00950000182888.b	ENSGT00940000154842.a.a ##23	ENSGT00390000020276.qb.a	ENSGT00940000154394.b.a.b	ENSGT00730000111343	ENSGT00620000089226	ENSGT00950000183177.a.a.a.b	ENSGT00940000164907	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721	ENSGT00390000012665	ENSGT01080000257442	ENSGT00940000164772	ENSGT00940000159652	ENSGT00940000156002.b	ENSGT00940000155275.d	ENSGT00940000166112	ENSGT00940000161928	ENSGT00950000186109	ENSGT00390000006843	ENSGT00530000063843.a
Tetrapoda	ANCESTRAL SPECIES	65	ENSGT00940000160908	ENSGT00940000153116.D	ENSGT00390000016002	ENSGT00390000016543	ENSGT00390000002738.a	ENSGT00940000162046	ENSGT00390000008519	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000170043.B	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000164721	ENSGT00940000163282	ENSGT00940000159838	ENSGT00390000012665	ENSGT01080000257442	ENSGT00940000164772	ENSGT00940000159652	ENSGT00940000156002.b	ENSGT00940000155275.d	ENSGT00940000166112	ENSGT00940000161928	ENSGT00950000186109	ENSGT00390000006843
Anura	ANCESTRAL SPECIES	57	ENSGT00390000016002	ENSGT00390000016543	ENSGT00390000002738.a	ENSGT00940000162046	ENSGT00390000008519	ENSGT00390000003828	ENSGT00940000156773	ENSGT01040000242397	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000170043.B	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000164721	ENSGT00940000163282.f.a	ENSGT00940000157531	ENSGT00940000163282.e.b.b	ENSGT00390000012665	ENSGT00940000164772.d	ENSGT00940000159652	ENSGT00940000156002.b	ENSGT00940000155275.d	ENSGT00940000166112
Frog	MODERN SPECIES	8	mrpl41 (ENSXETG00000044525)	dph7 (ENSXETG00000041554)	zmynd19 (ENSXETG00000046409)	edf1 (ENSXETG00000003971)	coq4 (ENSXETG00000003972)	trub2 (ENSXETG00000044187)	paxx (ENSXETG00000038269)	clic3 (ENSXETG00000003974)	abca2 (ENSXETG00000003978)	pou5f3.3 (ENSXETG00000026475)	pou5f3.2 (ENSXETG00000048336)	NPDC1 (ENSXETG00000045221)	entpd2 (ENSXETG00000019612)	SAPCD2 (ENSXETG00000042650)	ENSXETG00000037695	uap1l1 (ENSXETG00000041715) ##22	man1b1 (ENSXETG00000000402)	ENSXETG00000049371	tesk1 (ENSXETG00000047050)	ENSXETG00000041506	ENSXETG00000000396	ENSXETG00000001807	XB5954422 (ENSXETG00000031757)	ENSXETG00000024910	ENSXETG00000039145	col11a2 (ENSXETG00000000395)	XB5814630 [provisional:inmt] (ENSXETG00000042344)	ENSXETG00000042375	ENSXETG00000044890	ENSXETG00000046274	ENSXETG00000042435
Leishan spiny toad	MODERN SPECIES	12	PHPT1 (ENSLLEG00000025435)	ENSLLEG00000025134	COQ4 (ENSLLEG00000025030)	TRUB2 (ENSLLEG00000024945)	ENSLLEG00000024863	CLIC3 (ENSLLEG00000023733)	ABCA2 (ENSLLEG00000023074)	FUT7 (ENSLLEG00000023039)	ENSLLEG00000022982	ENSLLEG00000022913	ENSLLEG00000022749	ENTPD2 (ENSLLEG00000022667)	SAPCD2 (ENSLLEG00000022608)	ENSLLEG00000022575	ENSLLEG00000022472	UAP1L1 (ENSLLEG00000022405) ##22	MAN1B1 (ENSLLEG00000022062)	ENSLLEG00000021925	ENSLLEG00000021837	ENSLLEG00000021128	ENSLLEG00000021045	ENSLLEG00000020923	ENSLLEG00000020821	ENSLLEG00000020803	ENSLLEG00000020768	ENSLLEG00000020547	ENSLLEG00000030922	ENSLLEG00000030902	ENSLLEG00000030895	ENSLLEG00000030886	ENSLLEG00000030879
Amniota	ANCESTRAL SPECIES	36	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a	ENSGT01050000244868.a.a.a	ENSGT00940000153116.C.a	ENSGT00940000153116.D	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721	ENSGT00940000163282	ENSGT00940000157531	ENSGT00390000012665	ENSGT01080000257442	ENSGT00940000164772	ENSGT00940000159652	ENSGT00940000156002.b	ENSGT00940000155275.d	ENSGT00940000166112	ENSGT00940000160109	ENSGT00940000161928
Sauria	ANCESTRAL SPECIES	22	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a	ENSGT01050000244868.a.a.a	ENSGT00940000153116.D	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721	ENSGT00940000163282	ENSGT00390000012665	ENSGT01080000257442	ENSGT00940000164772	ENSGT00940000159652	ENSGT00940000156002.b	ENSGT00940000155275.d	ENSGT00940000166112	ENSGT00940000165673	ENSGT00940000159996	ENSGT00940000154149.a
Lepidosauria	ANCESTRAL SPECIES	50	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a	ENSGT00940000153116.D	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721
Episquamata	ANCESTRAL SPECIES	15	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a	ENSGT00940000153116.D	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721	ENSGT00950000182858.B	ENSGT00940000155853	ENSGT00940000156689	ENSGT00940000164999	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868	ENSGT00390000013765	ENSGT00910000145076	ENSGT00390000005084	ENSGT00390000010743.b
Laterata	ANCESTRAL SPECIES	20	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a	ENSGT00940000153116.D	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721	ENSGT00950000182858.B	ENSGT00940000155853	ENSGT00940000156689	ENSGT00940000164999	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868	ENSGT00390000013765	ENSGT00910000145076	ENSGT00390000005084	ENSGT00390000010743.b
Common wall lizard	MODERN SPECIES	419	SLC27A4 (ENSPMRG00000023568)	COQ4 (ENSPMRG00000023567)	ENSPMRG00000023566	TRUB2 (ENSPMRG00000023565)	ENSPMRG00000023564	ENSPMRG00000023562	DNM1 (ENSPMRG00000023474)	ENSPMRG00000023444	PTGES2 (ENSPMRG00000023439)	ODF2 (ENSPMRG00000023433)	FUT7 (ENSPMRG00000023431)	ABCA2 (ENSPMRG00000023312)	ENSPMRG00000023231	ENTPD2 (ENSPMRG00000023220)	SAPCD2 (ENSPMRG00000023214)	UAP1L1 (ENSPMRG00000023207) ##22	MAN1B1 (ENSPMRG00000023196)	ENSPMRG00000023188	DPP7 (ENSPMRG00000023182)	ENSPMRG00000023179	ENSPMRG00000023176	GLT6D1 (ENSPMRG00000023173)	ENSPMRG00000023170	DAB2IP (ENSPMRG00000023161)	TTLL11 (ENSPMRG00000023154)	ENSPMRG00000023149	ENSPMRG00000023148	ENSPMRG00000023144	LHX6 (ENSPMRG00000023138)	RBM18 (ENSPMRG00000023130)	ENSPMRG00000023128
Argentine black and white tegu	MODERN SPECIES	52	PHPT1 (ENSSMRG00000011632)	MAMDC4 (ENSSMRG00000011631)	EDF1 (ENSSMRG00000011630)	TRAF2 (ENSSMRG00000011628)	FBXW5 (ENSSMRG00000011616)	PTGDS (ENSSMRG00000011614)	ENSSMRG00000011612	TMEM141 (ENSSMRG00000011600)	PAXX (ENSSMRG00000011599)	CLIC3 (ENSSMRG00000011597)	ABCA2 (ENSSMRG00000011587)	FUT7 (ENSSMRG00000011585)	ENSSMRG00000011580	ENTPD2 (ENSSMRG00000011579)	SAPCD2 (ENSSMRG00000011577)	UAP1L1 (ENSSMRG00000011576) ##22	MAN1B1 (ENSSMRG00000011572)	ENSSMRG00000011538	DPP7 (ENSSMRG00000011535)	ENSSMRG00000011531	FCN1 (ENSSMRG00000011526)	GLT6D1 (ENSSMRG00000011525)	DAB2IP (ENSSMRG00000011519)	TTLL11 (ENSSMRG00000011516)	ENSSMRG00000011514	NDUFA8 (ENSSMRG00000011511)	MORN5 (ENSSMRG00000011506)	LHX6 (ENSSMRG00000011499)	RBM18 (ENSSMRG00000011491)	MRRF (ENSSMRG00000011490)	PTGS1 (ENSSMRG00000011488)
Toxicofera	ANCESTRAL SPECIES	46	ENSGT00390000002738.a	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a	ENSGT01010000225451	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000166451	ENSGT00940000164721	ENSGT00950000182858.B	ENSGT00940000155853	ENSGT00940000156689	ENSGT00940000164999	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868	ENSGT00390000013765	ENSGT00390000005084
Elapidae	ANCESTRAL SPECIES	18	ENSGT00390000002738.a	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a	ENSGT01010000225451	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000166451	ENSGT00940000164721	ENSGT00950000182858.B	ENSGT00940000155853	ENSGT00940000156689	ENSGT00940000164999	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000159734	ENSGT00940000160316
Indian cobra	MODERN SPECIES	8	ENSNNAG00000009345	RABL6 (ENSNNAG00000009380)	AJM1 (ENSNNAG00000009447)	PHPT1 (ENSNNAG00000009487)	TRAF2 (ENSNNAG00000009505)	FBXW5 (ENSNNAG00000009552)	C8G (ENSNNAG00000009579)	PTGDS (ENSNNAG00000009605)	ENSNNAG00000009664	CLIC3 (ENSNNAG00000009718)	ABCA2 (ENSNNAG00000010443)	FUT7 (ENSNNAG00000016759)	NPDC1 (ENSNNAG00000016764)	ENTPD2 (ENSNNAG00000016777)	DPP7 (ENSNNAG00000016792)	UAP1L1 (ENSNNAG00000016826) ##22	MAN1B1 (ENSNNAG00000016836)	ENSNNAG00000016860	ENSNNAG00000016870	GLT6D1 (ENSNNAG00000016882)	DAB2IP (ENSNNAG00000016897)	TTLL11 (ENSNNAG00000016934)	ENSNNAG00000016947	NDUFA8 (ENSNNAG00000016957)	ENSNNAG00000016968	ENSNNAG00000016970	LHX6 (ENSNNAG00000016976)	RBM18 (ENSNNAG00000016989)	MRRF (ENSNNAG00000016994)	QSOX2 (ENSNNAG00000017008)	ENSNNAG00000017032
Elapidae_a	ANCESTRAL SPECIES	26									ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000166451	ENSGT00940000164721	ENSGT00950000182858.B	ENSGT00940000155853	ENSGT00940000156689	ENSGT00940000164999	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000159734	ENSGT00940000160316
Acanthophiinae	ANCESTRAL SPECIES	48	ENSGT00390000016002	ENSGT00390000016543	ENSGT00390000002738.a	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT01030000237906	ENSGT01010000225451	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000166451	ENSGT00940000164721	ENSGT00950000182858.B
Eastern brown snake	MODERN SPECIES	54	ENSPTXG00000008005	RABL6 (ENSPTXG00000008006)	AJM1 (ENSPTXG00000008007)	PHPT1 (ENSPTXG00000008009)	MAMDC4 (ENSPTXG00000008011)	EDF1 (ENSPTXG00000008012)	TRAF2 (ENSPTXG00000008013)	FBXW5 (ENSPTXG00000008014)	ENSPTXG00000008015	ENSPTXG00000008016	CLIC3 (ENSPTXG00000008020)	ABCA2 (ENSPTXG00000008231)	FUT7 (ENSPTXG00000008232)	NPDC1 (ENSPTXG00000008233)	ENTPD2 (ENSPTXG00000008234)	UAP1L1 (ENSPTXG00000008244) ##22	MAN1B1 (ENSPTXG00000008245)	DPP7 (ENSPTXG00000008249)	ENSPTXG00000008250	ENSPTXG00000008254	GLT6D1 (ENSPTXG00000008256)	DAB2IP (ENSPTXG00000008262)	TTLL11 (ENSPTXG00000008265)	ENSPTXG00000008267	NDUFA8 (ENSPTXG00000008269)	ENSPTXG00000008270	LHX6 (ENSPTXG00000008272)	RBM18 (ENSPTXG00000008275)	MRRF (ENSPTXG00000008276)	QSOX2 (ENSPTXG00000008277)	LHX3 (ENSPTXG00000014125)
Mainland tiger snake	MODERN SPECIES	269			RABL6 (ENSNSUG00000003149)	AJM1 (ENSNSUG00000003146)	EDF1 (ENSNSUG00000003140)	TRAF2 (ENSNSUG00000003134)	FBXW5 (ENSNSUG00000003132)	ENSNSUG00000003131	PAXX (ENSNSUG00000003121)	CLIC3 (ENSNSUG00000003117)	ABCA2 (ENSNSUG00000003110)	FUT7 (ENSNSUG00000003109)	NPDC1 (ENSNSUG00000003108)	ENTPD2 (ENSNSUG00000003107)	SAPCD2 (ENSNSUG00000003105)	UAP1L1 (ENSNSUG00000003104) ##22	MAN1B1 (ENSNSUG00000003100)	ENSNSUG00000003098	DPP7 (ENSNSUG00000003096)	GLT6D1 (ENSNSUG00000003095)	DAB2IP (ENSNSUG00000002997)	ENSNSUG00000002996	ENSNSUG00000002995	ENSNSUG00000002994	NDUFA8 (ENSNSUG00000002993)	MORN5 (ENSNSUG00000002992)	LHX6 (ENSNSUG00000002991)	RBM18 (ENSNSUG00000002990)	MRRF (ENSNSUG00000002988)	QSOX2 (ENSNSUG00000002966)	TMEM250 (ENSNSUG00000002964)
Blue-lipped sea krait	MODERN SPECIES	2336																UAP1L1 (ENSLLTG00000002765) ##22	MAN1B1 (ENSLLTG00000002780)	DPP7 (ENSLLTG00000002792)	ENSLLTG00000002800	ENSLLTG00000002807	GLT6D1 (ENSLLTG00000002814)
Lizard	MODERN SPECIES	2135																ENSACAG00000001493 ##22	ENSACAG00000035965
tuatara	MODERN SPECIES	740										FUT7 (ENSSPUG00000011762)	ENSSPUG00000011770	NPDC1 (ENSSPUG00000011786)	ENTPD2 (ENSSPUG00000011801)	ENSSPUG00000011828	SAPCD2 (ENSSPUG00000011927)	UAP1L1 (ENSSPUG00000011963) ##22	MAN1B1 (ENSSPUG00000012044)	DPP7 (ENSSPUG00000012058)	ENSSPUG00000012075	ENSSPUG00000012090	ENSSPUG00000012099	ENSSPUG00000012109	ENSSPUG00000012118	ENSSPUG00000012125	ENSSPUG00000012133	ENSSPUG00000012144	ENSSPUG00000012152	ENSSPUG00000012164	ENSSPUG00000012169	ENSSPUG00000012175
Archelosauria	ANCESTRAL SPECIES	28	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.a.a.b.a	ENSGT01050000244868.a.a.a	ENSGT01100000263580	ENSGT00440000038604	ENSGT00960000191818	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00390000000543	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721	ENSGT00940000163282.i.a	ENSGT00960000189446	ENSGT01100000263542.B.b.h	ENSGT00390000012665	ENSGT01080000257442	ENSGT00940000164772	ENSGT00940000159652	ENSGT00940000156002.b	ENSGT00940000155275.d	ENSGT00940000166112	ENSGT00940000165673
Archosauria	ANCESTRAL SPECIES	39	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a	ENSGT01050000244868.a.a.a	ENSGT00440000038604	ENSGT00960000191818	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00390000000543	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721	ENSGT00940000163282.i.a	ENSGT00960000189446
Aves	ANCESTRAL SPECIES	21	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a	ENSGT01050000244868.a.a.a	ENSGT00440000038604	ENSGT00960000191818	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00390000000543	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721	ENSGT00940000163282.i.a	ENSGT00960000189446	ENSGT00460000041630
Neognathae	ANCESTRAL SPECIES	20	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a	ENSGT01050000244868.a.a.a	ENSGT00440000038604	ENSGT00960000191818	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00390000000543	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721	ENSGT00940000163282.i.a	ENSGT00960000189446	ENSGT00460000041630
Galloanserae	ANCESTRAL SPECIES	22	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a	ENSGT01050000244868.a.a.a	ENSGT00440000038604	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00390000000543	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721	ENSGT00940000163282.i.a	ENSGT00960000189446
Anatidae	ANCESTRAL SPECIES	13	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a	ENSGT01050000244868.a.a.a	ENSGT01100000263561.A	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00390000000543	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721	ENSGT00940000163282.i.a	ENSGT00960000189446
Pink-footed goose	MODERN SPECIES	8	TRAF2 (ENSABRG00000018453)	FBXW5 (ENSABRG00000018446)	ENSABRG00000018441	PTGDS (ENSABRG00000018435)	ENSABRG00000018430	ENSABRG00000018425	ENSABRG00000018420	ENSABRG00000018415	NPDC1 (ENSABRG00000018406)	ENSABRG00000018401	ABCA2 (ENSABRG00000018369)	CLIC3 (ENSABRG00000018357)	PAXX (ENSABRG00000018351)	TMEM141 (ENSABRG00000018348)	ENTPD2 (ENSABRG00000018341)	UAP1L1 (ENSABRG00000018322) ##22	MAN1B1 (ENSABRG00000018315)	ENSABRG00000018296	DPP7 (ENSABRG00000018278)	ENSABRG00000018275	ENSABRG00000018273	ENSABRG00000018270
Duck	MODERN SPECIES	35																UAP1L1 (ENSAPLG00000005633) ##22	ENSAPLG00000020451	MAN1B1 (ENSAPLG00000006155)	DPP7 (ENSAPLG00000006425)	ENSAPLG00000028103	ENSAPLG00000007334	ENSAPLG00000007558	ENSAPLG00000007625
Phasianidae	ANCESTRAL SPECIES	20	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a	ENSGT01050000244868.a.a.a	ENSGT01060000248581.E	ENSGT00440000038604	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT01070000255926	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721	ENSGT00940000163282.i.a	ENSGT00960000189446	ENSGT00940000154323.a	ENSGT00530000063725.j
Japanese quail	MODERN SPECIES	8	FBXW5 (ENSCJPG00005015805)	ENSCJPG00005015804	C8G (ENSCJPG00005015803)	PTGDS (ENSCJPG00005015802)	ENSCJPG00005015800	ENSCJPG00005015798	ENSCJPG00005015796	NPDC1 (ENSCJPG00005015789)	ENSCJPG00005015786	FUT7 (ENSCJPG00005015784)	ABCA2 (ENSCJPG00005015782)	CLIC3 (ENSCJPG00005015781)	TMEM141 (ENSCJPG00005015779)	ENTPD2 (ENSCJPG00005015778)	SAPCD2 (ENSCJPG00005015777)	UAP1L1 (ENSCJPG00005015776) ##22	MAN1B1 (ENSCJPG00005015772)	DPP7 (ENSCJPG00005015771)	ENSCJPG00005015770	ENSCJPG00005015769	ENSCJPG00005015768
Phasianidae_b	ANCESTRAL SPECIES	19	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a	ENSGT01050000244868.a.a.a	ENSGT01060000248581.E	ENSGT00440000038604	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT01070000255926	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721	ENSGT00940000163282.i.a	ENSGT00960000189446	ENSGT00460000041630	ENSGT00940000154323.a	ENSGT00530000063725.j
Chicken	MODERN SPECIES	8	FBXW5 (ENSGALG00010028456)	C8G (ENSGALG00010028454)	PTGDS (ENSGALG00010028450)	LCN15 (ENSGALG00010027808)	EXFABP (ENSGALG00010028912)	ENSGALG00010028928	NPDC1 (ENSGALG00010029140)	Pou5f3 (ENSGALG00010027377)	CFTII (ENSGALG00010027375)	ABCA2 (ENSGALG00010028002)	CLIC3 (ENSGALG00010027993)	ENSGALG00010027989	TMEM141 (ENSGALG00010027987)	ENTPD2 (ENSGALG00010027982)	SAPCD2 (ENSGALG00010027803)	UAP1L1 (ENSGALG00010027789) ##22	MAN1B1 (ENSGALG00010028049)	ENSGALG00010028045	DPP7 (ENSGALG00010028042)	ENSGALG00010028037	ENSGALG00010028033	ANKMY1 (ENSGALG00010028026)	ENSGALG00010028020	PRF1 (ENSGALG00010028016)	ENSGALG00010028908	ENSGALG00010028907	ENSGALG00010028927	ENSGALG00010028926	ENSGALG00010028906	COLGALT1 (ENSGALG00010028905)
Turkey	MODERN SPECIES	10	TRAF2 (ENSMGAG00000000859)	FBXW5 (ENSMGAG00000000845)	C8G (ENSMGAG00000000833)	ENSMGAG00000000770	ENSMGAG00000000767	ENSMGAG00000000761	ENSMGAG00000019929	ENSMGAG00000000742	ENSMGAG00000000739	ENSMGAG00000001168	ENSMGAG00000001109	ENSMGAG00000001100	ENSMGAG00000017767	ENTPD2 (ENSMGAG00000001070)	SAPCD2 (ENSMGAG00000001034)	UAP1L1 (ENSMGAG00000000988) ##22	MAN1B1 (ENSMGAG00000000931)	ENSMGAG00000000920	DPP7 (ENSMGAG00000000894)	ENSMGAG00000000824	ENSMGAG00000000784	ENSMGAG00000020344	ENSMGAG00000000743	ENSMGAG00000000923	ENSMGAG00000000912	ENSMGAG00000017670	ENSMGAG00000019359	ENSMGAG00000000752	ENSMGAG00000018270
Neognathae_b	ANCESTRAL SPECIES	21	ENSGT00990000203858	ENSGT00440000034309	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a	ENSGT01050000244868.a.a.a	ENSGT00440000038604	ENSGT00960000191818	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT01070000255926	ENSGT00390000000543	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000166451	ENSGT00940000164721	ENSGT00940000163282.i.a	ENSGT00960000189446	ENSGT00460000041630
Neognathae_c	ANCESTRAL SPECIES	25	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a	ENSGT01050000244868.a.a.a	ENSGT01100000263561.A	ENSGT00440000038604	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT01070000255926	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000166451	ENSGT00940000164721	ENSGT00940000163282.i.a	ENSGT00960000189446
Golden eagle	MODERN SPECIES	16	ENSACCG00020013797	C8G (ENSACCG00020013782)	ENSACCG00020013739	ENSACCG00020013723	ENSACCG00020013706	NPDC1 (ENSACCG00020013674)	ENSACCG00020013630	ENSACCG00020013611	FUT7 (ENSACCG00020013600)	ABCA2 (ENSACCG00020013487)	CLIC3 (ENSACCG00020013370)	ENSACCG00020013360	ENSACCG00020013350	ENTPD2 (ENSACCG00020013326)	SAPCD2 (ENSACCG00020013306)	UAP1L1 (ENSACCG00020013290) ##22	MAN1B1 (ENSACCG00020013269)	ENSACCG00020013244	DPP7 (ENSACCG00020013228)	ENSACCG00020013204	ENSACCG00020013151	ENSACCG00020013139	ENSACCG00020013126	CACNA1S (ENSACCG00020013047)	KIF21B (ENSACCG00020011854)	ELF3 (ENSACCG00020010963)	GPR37L1 (ENSACCG00020010948)	ARL8A (ENSACCG00020010931)	PTPN7 (ENSACCG00020010920)	ENSACCG00020010909	LGR6 (ENSACCG00020010867)
Kakapo	MODERN SPECIES	9	C8G (ENSSHBG00005010164)	PTGDS (ENSSHBG00005010194)	ENSSHBG00005010219	ENSSHBG00005010262	ENSSHBG00005010279	NPDC1 (ENSSHBG00005010309)	ENSSHBG00005010333	FUT7 (ENSSHBG00005010349)	ABCA2 (ENSSHBG00005010693)	ENSSHBG00005011598	CLIC3 (ENSSHBG00005011615)	ENSSHBG00005011639	TMEM141 (ENSSHBG00005011657)	ENTPD2 (ENSSHBG00005011671)	SAPCD2 (ENSSHBG00005011695)	UAP1L1 (ENSSHBG00005011728) ##22	MAN1B1 (ENSSHBG00005011749)	DPP7 (ENSSHBG00005011773)	ENSSHBG00005011795	ENSSHBG00005011810	ENSSHBG00005011839	ENSSHBG00005011857
Passeriformes	ANCESTRAL SPECIES	20	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01100000263580	ENSGT00960000190092	ENSGT01050000244868.a.a.a	ENSGT00440000038604	ENSGT00960000191818	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00390000000543	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000163282.i.a	ENSGT00960000189446
Passeriformes_d	ANCESTRAL SPECIES	20	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.a.a.b.a	ENSGT01100000263580	ENSGT00960000190092	ENSGT01050000244868.a.a.a	ENSGT00440000038604	ENSGT00960000191818	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000163282.i.a	ENSGT00960000189446
Passeriformes_g	ANCESTRAL SPECIES	21	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01100000263580	ENSGT00960000190092	ENSGT01050000244868.a.a.a	ENSGT00440000038604	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000163282.i.a	ENSGT00960000189446
Medium ground finch	MODERN SPECIES	61	EDF1 (ENSGFOG00000011531)	TRAF2 (ENSGFOG00000011518)	FBXW5 (ENSGFOG00000011508)	C8G (ENSGFOG00000011489)	PTGDS (ENSGFOG00000011479)	ENSGFOG00000011473	ENSGFOG00000011467	NPDC1 (ENSGFOG00000011462)	ENSGFOG00000011457	FUT7 (ENSGFOG00000011444)	ABCA2 (ENSGFOG00000009926)	CLIC3 (ENSGFOG00000009831)	ENSGFOG00000009824	ENTPD2 (ENSGFOG00000009812)	SAPCD2 (ENSGFOG00000009802)	UAP1L1 (ENSGFOG00000009798) ##22	MAN1B1 (ENSGFOG00000009790)	DPP7 (ENSGFOG00000009780)	ENSGFOG00000009774	ENSGFOG00000009768
Passeroidea	ANCESTRAL SPECIES	21	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01100000263580	ENSGT00960000190092	ENSGT01050000244868.a.a.a	ENSGT00440000038604	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000163282.i.a
Zebra finch	MODERN SPECIES	8	MAMDC4 (ENSTGUG00000002460)	TRAF2 (ENSTGUG00000002428)	FBXW5 (ENSTGUG00000002426)	ENSTGUG00000024513	C8G (ENSTGUG00000002420)	ENSTGUG00000002419	ENSTGUG00000021879	NPDC1 (ENSTGUG00000002413)	ENSTGUG00000002412	EDF1 (ENSTGUG00000002446)	ABCA2 (ENSTGUG00000002344)	CLIC3 (ENSTGUG00000025951)	ENTPD2 (ENSTGUG00000002332)	ENSTGUG00000002339	SAPCD2 (ENSTGUG00000002330)	UAP1L1 (ENSTGUG00000002318) ##22	MAN1B1 (ENSTGUG00000002313)	DPP7 (ENSTGUG00000002295)	ENSTGUG00000027713
Common canary	MODERN SPECIES	22	MAMDC4 (ENSSCAG00000010610)	EDF1 (ENSSCAG00000010625)	TRAF2 (ENSSCAG00000010636)	FBXW5 (ENSSCAG00000010648)	C8G (ENSSCAG00000010662)	PTGDS (ENSSCAG00000010673)	ENSSCAG00000010678	NPDC1 (ENSSCAG00000010688)	ENSSCAG00000010701	FUT7 (ENSSCAG00000010709)	ABCA2 (ENSSCAG00000010900)	CLIC3 (ENSSCAG00000011810)	ENSSCAG00000011813	ENTPD2 (ENSSCAG00000011816)	SAPCD2 (ENSSCAG00000011823)	UAP1L1 (ENSSCAG00000011831) ##22	MAN1B1 (ENSSCAG00000011852)	DPP7 (ENSSCAG00000011859)	ENSSCAG00000011863
Great tit	MODERN SPECIES	7	TRAF2 (ENSPMJG00000015149)	FBXW5 (ENSPMJG00000015150)	C8G (ENSPMJG00000015151)	PTGDS (ENSPMJG00000015152)	ENSPMJG00000015153	ENSPMJG00000015154	NPDC1 (ENSPMJG00000015155)	ENSPMJG00000015156	FUT7 (ENSPMJG00000015157)	ENSPMJG00000015158	ABCA2 (ENSPMJG00000015159)	ENSPMJG00000015160	ENSPMJG00000015161	ENTPD2 (ENSPMJG00000015162)	SAPCD2 (ENSPMJG00000015163)	UAP1L1 (ENSPMJG00000015164) ##22	MAN1B1 (ENSPMJG00000015165)
Australian saltwater crocodile	MODERN SPECIES	44	MAMDC4 (ENSCPRG00005011092)	EDF1 (ENSCPRG00005011089)	TRAF2 (ENSCPRG00005011079)	FBXW5 (ENSCPRG00005011077)	ENSCPRG00005011067	PTGDS (ENSCPRG00005011064)	NPDC1 (ENSCPRG00005011060)	ENSCPRG00005011059	FUT7 (ENSCPRG00005011058)	ABCA2 (ENSCPRG00005010727)	CLIC3 (ENSCPRG00005010668)	ENSCPRG00005010659	ENSCPRG00005010658	ENTPD2 (ENSCPRG00005010655)	SAPCD2 (ENSCPRG00005010651)	UAP1L1 (ENSCPRG00005010639) ##22	MAN1B1 (ENSCPRG00005010635)	ENSCPRG00005010632	DPP7 (ENSCPRG00005010623)	ENSCPRG00005010618
Cryptodira	ANCESTRAL SPECIES	42						ENSGT00940000154394.b.a.b	ENSGT00440000038604	ENSGT00960000191818	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00390000000543	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000164721	ENSGT00940000163282.i.a.a.a.b	ENSGT00940000166451	ENSGT00940000163282.i.a.a.b	ENSGT00940000157531.j.b	ENSGT01100000263542.B.b.h	ENSGT00390000012665	ENSGT01080000257442	ENSGT00940000164772	ENSGT00940000159652	ENSGT00940000156002.b	ENSGT00940000155275.d	ENSGT00940000166112
Testudinoidea	ANCESTRAL SPECIES	41	ENSGT00390000016127	ENSGT00950000182888.b	ENSGT00960000189388	ENSGT00940000154842.a.a ##23	ENSGT00730000111343	ENSGT00940000161436	ENSGT00440000038604	ENSGT00960000191818	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00390000000543	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000164721	ENSGT00940000163282.i.a.a.a.b	ENSGT00940000166451
Emydidae	ANCESTRAL SPECIES	60	ENSGT00390000016127	ENSGT00950000182888.b	ENSGT00960000189388	ENSGT00940000154842.a.a ##23	ENSGT00730000111343	ENSGT00940000161436	ENSGT00440000038604	ENSGT00960000191818	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00390000000543	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000164721	ENSGT00940000163282.i.a.a.a.b	ENSGT00940000166451	ENSGT00960000189446.a	ENSGT00940000163282.i.a.b.a.b	ENSGT00940000157531.j.a.b.c	ENSGT00940000163282.i.a.b.a.a
Three-toed box turtle	MODERN SPECIES	210	TOR4A (ENSTMTG00000005577)	ENSTMTG00000005587	ENSTMTG00000005608	ENSTMTG00000005638 ##23	ENSTMTG00000005707	ENSTMTG00000005731	NPDC1 (ENSTMTG00000005803)	ENSTMTG00000005821	FUT7 (ENSTMTG00000005831)	ABCA2 (ENSTMTG00000005858)	CLIC3 (ENSTMTG00000006067)	PAXX (ENSTMTG00000006133)	TMEM141 (ENSTMTG00000006156)	ENTPD2 (ENSTMTG00000006172)	SAPCD2 (ENSTMTG00000006212)	UAP1L1 (ENSTMTG00000006257) ##22	MAN1B1 (ENSTMTG00000006276)	DPP7 (ENSTMTG00000006324)	ENSTMTG00000006540	ENSTMTG00000006552	ENSTMTG00000006590	ENSTMTG00000006624	ENSTMTG00000006631	FCN1 (ENSTMTG00000006635)	ENSTMTG00000006653	ENSTMTG00000006667	ENSTMTG00000006716	ENSTMTG00000003334	ENSTMTG00000003348
painted turtle	MODERN SPECIES	953							ENSCPBG00000010763	ENSCPBG00000010760	FUT7 (ENSCPBG00000010756)	ABCA2 (ENSCPBG00000010737)	CLIC3 (ENSCPBG00000010728)	PAXX (ENSCPBG00000010725)	TMEM141 (ENSCPBG00000010716)	ENTPD2 (ENSCPBG00000010710)	SAPCD2 (ENSCPBG00000010706)	UAP1L1 (ENSCPBG00000010700) ##22	MAN1B1 (ENSCPBG00000010690)	DPP7 (ENSCPBG00000010681)	ENSCPBG00000010676	ENSCPBG00000010663	ENSCPBG00000010659
Testudinidae	ANCESTRAL SPECIES	64	ENSGT00390000016127	ENSGT00950000182888.b	ENSGT00960000189388	ENSGT00940000154842.a.a ##23	ENSGT00730000111343	ENSGT00940000161436	ENSGT00440000038604	ENSGT00940000162208	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00390000000543	ENSGT00940000153116.D	ENSGT01100000263542.B.b.g	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000166451
Goode s thornscrub tortoise	MODERN SPECIES	7	ENSGEVG00005011193	ANAPC2 (ENSGEVG00005011230)	TOR4A (ENSGEVG00005011262)	ENSGEVG00005011305 ##23	ENSGEVG00005011439	ENSGEVG00005011522	NPDC1 (ENSGEVG00005011676)	ENSGEVG00005011823	FUT7 (ENSGEVG00005011931)	ABCA2 (ENSGEVG00005012013)	CLIC3 (ENSGEVG00005013318)	PAXX (ENSGEVG00005013377)	TMEM141 (ENSGEVG00005013420)	ENTPD2 (ENSGEVG00005013461)	SAPCD2 (ENSGEVG00005013615)	UAP1L1 (ENSGEVG00005013729) ##22	MAN1B1 (ENSGEVG00005014141)	DPP7 (ENSGEVG00005014187)	ENSGEVG00005014218	ENSGEVG00005014257	ENSGEVG00005014319	ENSGEVG00005014710	ENSGEVG00005015252	ENSGEVG00005009912	ENSGEVG00005010026	ENSGEVG00005010356	ENSGEVG00005010397	ENSGEVG00005010463	NELFB (ENSGEVG00005010663)	ENSGEVG00005010709	ARRDC1 (ENSGEVG00005010739)
Abingdon island giant tortoise	MODERN SPECIES	568															SAPCD2 (ENSCABG00000012861)	UAP1L1 (ENSCABG00000012851) ##22	MAN1B1 (ENSCABG00000012844)	ENSCABG00000012841	DPP7 (ENSCABG00000012838)	ENSCABG00000012830	ENSCABG00000012828	ENSCABG00000012702	ENSCABG00000012693
Chinese turtle	MODERN SPECIES	206														ENSPSIG00000009188	ENSPSIG00000010469	UAP1L1 (ENSPSIG00000010809) ##22	MAN1B1 (ENSPSIG00000011310)	ENSPSIG00000014691	ENSPSIG00000016244	ENSPSIG00000016801	ENSPSIG00000016976
Mammalia	ANCESTRAL SPECIES	98	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721
Theria	ANCESTRAL SPECIES	23	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721
Eutheria	ANCESTRAL SPECIES	7	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Atlantogenata	ANCESTRAL SPECIES	83	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b.c	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422.y	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b	ENSGT00730000111343
Xenarthra	ANCESTRAL SPECIES	475									ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422.y	ENSGT00940000159838
Armadillo	MODERN SPECIES	4365							ENSDNOG00000049640	ENSDNOG00000047419	ENSDNOG00000035633	PAXX (ENSDNOG00000030696)	CLIC3 (ENSDNOG00000032624)	ENSDNOG00000044837	ENSDNOG00000047119	ENTPD2 (ENSDNOG00000043403)	ENSDNOG00000034765	UAP1L1 (ENSDNOG00000037400) ##22	MAN1B1 (ENSDNOG00000040197)	DPP7 (ENSDNOG00000025818)
Sloth	MODERN SPECIES	7248																ENSCHOG00000009763 ##22
Afrotheria	ANCESTRAL SPECIES	125											ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422.y	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b	ENSGT00730000111343	ENSGT00390000009524
Afrotheria_a	ANCESTRAL SPECIES	129											ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422.y	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b	ENSGT00730000111343	ENSGT00390000009524
Elephant	MODERN SPECIES	259							ENSLAFG00000028177	ENSLAFG00000026961	ENSLAFG00000031055	ENSLAFG00000005661	ABCA2 (ENSLAFG00000022620)	ENSLAFG00000015156	NPDC1 (ENSLAFG00000011092)	ENTPD2 (ENSLAFG00000011099)	SAPCD2 (ENSLAFG00000008741)	UAP1L1 (ENSLAFG00000009977) ##22	ENSLAFG00000027675	DPP7 (ENSLAFG00000025640)	ENSLAFG00000025622	ENSLAFG00000031097
Hyrax	MODERN SPECIES	8915															SAPCD2 (ENSPCAG00000001783)	UAP1L1 (ENSPCAG00000001733) ##22
Boreoeutheria	ANCESTRAL SPECIES	10	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Laurasiatheria	ANCESTRAL SPECIES	9	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000153464.A.a ##22
Hedgehog	MODERN SPECIES	15453																UAP1L1 (ENSEEUG00000005423) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	11	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Suina	ANCESTRAL SPECIES	47	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01050000244868.a.a.b.a.a	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Pig	MODERN SPECIES	286	EDF1 (ENSSSCG00000038203)	TRAF2 (ENSSSCG00000005838)	ENSSSCG00000032001	FBXW5 (ENSSSCG00000005839)	C8G (ENSSSCG00000005840)	ENSSSCG00000040164	PTGDS (ENSSSCG00000040080)	ENSSSCG00000053158	PAXX (ENSSSCG00000038428)	CLIC3 (ENSSSCG00000037395)	ABCA2 (ENSSSCG00000039264)	FUT7 (ENSSSCG00000037554)	NPDC1 (ENSSSCG00000034566)	ENTPD2 (ENSSSCG00000032303)	SAPCD2 (ENSSSCG00000032279)	UAP1L1 (ENSSSCG00000040003) ##22	ENSSSCG00000039830	DPP7 (ENSSSCG00000033991)	ENSSSCG00000027526	GRIN1 (ENSSSCG00000039834)	LRRC26 (ENSSSCG00000032509)	ANAPC2 (ENSSSCG00000032828)	SSNA1 (ENSSSCG00000040396)	ENSSSCG00000036027	TMEM203 (ENSSSCG00000034562)	NDOR1 (ENSSSCG00000005859)	RNF208 (ENSSSCG00000005858)	CYSRT1 (ENSSSCG00000005857)	RNF224 (ENSSSCG00000005856)	SLC34A3 (ENSSSCG00000040105)	TUBB4B (ENSSSCG00000037046)
Chacoan peccary	MODERN SPECIES	794			TRAF2 (ENSCWAG00000015060)	FBXW5 (ENSCWAG00000015332)	ENSCWAG00000015368	C8G (ENSCWAG00000015413)	ENSCWAG00000015490	PTGDS (ENSCWAG00000015570)	PAXX (ENSCWAG00000015628)	CLIC3 (ENSCWAG00000015657)	ENSCWAG00000015716	FUT7 (ENSCWAG00000015840)	NPDC1 (ENSCWAG00000015856)	ENTPD2 (ENSCWAG00000015883)	SAPCD2 (ENSCWAG00000015989)	UAP1L1 (ENSCWAG00000016046) ##22	MAN1B1 (ENSCWAG00000016126)	DPP7 (ENSCWAG00000016154)	ENSCWAG00000016244	ENSCWAG00000016334	LRRC26 (ENSCWAG00000016371)	TMEM210 (ENSCWAG00000016398)	ANAPC2 (ENSCWAG00000016433)	SSNA1 (ENSCWAG00000016461)	ENSCWAG00000016496	TMEM203 (ENSCWAG00000016507)	NDOR1 (ENSCWAG00000016522)	RNF208 (ENSCWAG00000016647)	CYSRT1 (ENSCWAG00000016658)	RNF224 (ENSCWAG00000016669)	SLC34A3 (ENSCWAG00000016682)
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Cetacea	ANCESTRAL SPECIES	9	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT00940000169457	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00940000166200	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510.i	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00390000002738.a.f	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01100000263580	ENSGT00940000166200	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510.i	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Odontoceti_a	ANCESTRAL SPECIES	19	ENSGT00390000002738.a.f	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01100000263580	ENSGT00940000166200	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510.i	ENSGT00930000151050	ENSGT00680000100126	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b	ENSGT00730000111343
Dolphin	MODERN SPECIES	2650									ENSTTRG00000002072	ENSTTRG00000021357	PAXX (ENSTTRG00000002075)	CLIC3 (ENSTTRG00000002077)	ABCA2 (ENSTTRG00000002078)	ENTPD2 (ENSTTRG00000002088)	SAPCD2 (ENSTTRG00000002090)	UAP1L1 (ENSTTRG00000002092) ##22	DPP7 (ENSTTRG00000002095)	GRIN1 (ENSTTRG00000002098)	LRRC26 (ENSTTRG00000002102)	TMEM210 (ENSTTRG00000002104)	ANAPC2 (ENSTTRG00000002105)	SSNA1 (ENSTTRG00000002112)
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00390000002738.a.f	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01100000263580	ENSGT00940000166200	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510.i	ENSGT00930000151050	ENSGT00680000100126	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b	ENSGT00730000111343
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00390000002738.a.f	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01100000263580	ENSGT00940000166200	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510.i	ENSGT00930000151050	ENSGT00680000100126	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b	ENSGT00730000111343	ENSGT00390000012665
Narwhal	MODERN SPECIES	312	RABL6 (ENSMMNG00015019023)	AJM1 (ENSMMNG00015019084)	ENSMMNG00015019093	MAMDC4 (ENSMMNG00015019122)	EDF1 (ENSMMNG00015019204)	TRAF2 (ENSMMNG00015019230)	FBXW5 (ENSMMNG00015019281)	C8G (ENSMMNG00015019320)	PTGDS (ENSMMNG00015019351)	PAXX (ENSMMNG00015019378)	CLIC3 (ENSMMNG00015019407)	FUT7 (ENSMMNG00015019751)	NPDC1 (ENSMMNG00015019790)	ENTPD2 (ENSMMNG00015019902)	SAPCD2 (ENSMMNG00015019948)	UAP1L1 (ENSMMNG00015019976) ##22	MAN1B1 (ENSMMNG00015020010)	DPP7 (ENSMMNG00015020061)	GRIN1 (ENSMMNG00015020191)	LRRC26 (ENSMMNG00015020364)	ANAPC2 (ENSMMNG00015020394)	SSNA1 (ENSMMNG00015020461)	TPRN (ENSMMNG00015020480)	ENSMMNG00015020488	NDOR1 (ENSMMNG00015020511)	RNF208 (ENSMMNG00015020573)	RNF224 (ENSMMNG00015020580)	ENSMMNG00015020595	TUBB4B (ENSMMNG00015020624)	FAM166A (ENSMMNG00015020649)	NELFB (ENSMMNG00015013996)
Beluga whale	MODERN SPECIES	19	CUNH9orf172 (ENSDLEG00000015531)	ENSDLEG00000015526	MAMDC4 (ENSDLEG00000015426)	EDF1 (ENSDLEG00000015396)	TRAF2 (ENSDLEG00000015358)	FBXW5 (ENSDLEG00000015343)	C8G (ENSDLEG00000015332)	PTGDS (ENSDLEG00000015309)	ENSDLEG00000015295	PAXX (ENSDLEG00000015266)	ABCA2 (ENSDLEG00000014944)	FUT7 (ENSDLEG00000014892)	NPDC1 (ENSDLEG00000014877)	ENTPD2 (ENSDLEG00000014672)	SAPCD2 (ENSDLEG00000014642)	UAP1L1 (ENSDLEG00000014607) ##22	MAN1B1 (ENSDLEG00000014568)	DPP7 (ENSDLEG00000014534)	GRIN1 (ENSDLEG00000014499)	ANAPC2 (ENSDLEG00000014473)	SSNA1 (ENSDLEG00000014448)	TPRN (ENSDLEG00000014441)	TMEM203 (ENSDLEG00000014439)	NDOR1 (ENSDLEG00000014392)	RNF208 (ENSDLEG00000014374)	RNF224 (ENSDLEG00000014360)	ENSDLEG00000014343	TUBB4B (ENSDLEG00000014334)	FAM166A (ENSDLEG00000014318)	NELFB (ENSDLEG00000014292)	TOR4A (ENSDLEG00000014280)
Vaquita	MODERN SPECIES	17	TMEM141 (ENSPSNG00000002634)	ENSPSNG00000002607	ENSPSNG00000002512	PHPT1 (ENSPSNG00000002382)	EDF1 (ENSPSNG00000002285)	TRAF2 (ENSPSNG00000002244)	FBXW5 (ENSPSNG00000002217)	ENSPSNG00000002179	PTGDS (ENSPSNG00000002147)	PAXX (ENSPSNG00000002121)	ABCA2 (ENSPSNG00000001646)	FUT7 (ENSPSNG00000001491)	NPDC1 (ENSPSNG00000001472)	ENTPD2 (ENSPSNG00000001445)	SAPCD2 (ENSPSNG00000001421)	UAP1L1 (ENSPSNG00000001388) ##22	ENSPSNG00000001359	DPP7 (ENSPSNG00000001337)	GRIN1 (ENSPSNG00000000703)	LRRC26 (ENSPSNG00000000354)	TMEM210 (ENSPSNG00000000329)	ANAPC2 (ENSPSNG00000000278)	SSNA1 (ENSPSNG00000000224)	ENSPSNG00000000175	NDOR1 (ENSPSNG00000000131)	RNF208 (ENSPSNG00000000079)	RNF224 (ENSPSNG00000000071)	ENSPSNG00000005867	ENSPSNG00000005831	FAM166A (ENSPSNG00000005807)	NELFB (ENSPSNG00000005776)
Sperm whale	MODERN SPECIES	4	ENSPCTG00005009085	LCN8 (ENSPCTG00005008995)	ENSPCTG00005008947	ENSPCTG00005008909	ENSPCTG00005008876	CCDC183 (ENSPCTG00005008792)	RABL6 (ENSPCTG00005008721)	AJM1 (ENSPCTG00005008687)	PHPT1 (ENSPCTG00005008655)	MAMDC4 (ENSPCTG00005008346)	FBXW5 (ENSPCTG00005008288)	TRAF2 (ENSPCTG00005008255)	LCNL1 (ENSPCTG00005008230)	PTGDS (ENSPCTG00005008209)	SAPCD2 (ENSPCTG00005008182)	UAP1L1 (ENSPCTG00005008156) ##22	ENSPCTG00005008108	DPP7 (ENSPCTG00005008071)	ENSPCTG00005008034	ENSPCTG00005008020	GRIN1 (ENSPCTG00005007612)	LRRC26 (ENSPCTG00005007520)	TMEM210 (ENSPCTG00005007504)	ANAPC2 (ENSPCTG00005007477)	SSNA1 (ENSPCTG00005007440)	ENSPCTG00005007417	TMEM203 (ENSPCTG00005007410)	NDOR1 (ENSPCTG00005007372)	RNF208 (ENSPCTG00005007323)	CYSRT1 (ENSPCTG00005007306)	RNF224 (ENSPCTG00005007288)
Blue whale	MODERN SPECIES	17	MAMDC4 (ENSBMSG00010006817)	EDF1 (ENSBMSG00010006887)	TRAF2 (ENSBMSG00010006905)	FBXW5 (ENSBMSG00010006925)	ENSBMSG00010006946	ENSBMSG00010006972	PTGDS (ENSBMSG00010006983)	PAXX (ENSBMSG00010007022)	CLIC3 (ENSBMSG00010007038)	ENSBMSG00010007062	ENSBMSG00010007094	FUT7 (ENSBMSG00010007113)	NPDC1 (ENSBMSG00010007128)	ENTPD2 (ENSBMSG00010007144)	SAPCD2 (ENSBMSG00010007159)	UAP1L1 (ENSBMSG00010007180) ##22	MAN1B1 (ENSBMSG00010007207)	DPP7 (ENSBMSG00010007230)	ENSBMSG00010007240	GRIN1 (ENSBMSG00010007304)	TMEM210 (ENSBMSG00010007400)	ANAPC2 (ENSBMSG00010007415)	SSNA1 (ENSBMSG00010007431)	TPRN (ENSBMSG00010003782)	ENSBMSG00010003797	NDOR1 (ENSBMSG00010003823)	RNF208 (ENSBMSG00010003851)	CYSRT1 (ENSBMSG00010003867)	RNF224 (ENSBMSG00010003878)	SLC34A3 (ENSBMSG00010003897)	TUBB4B (ENSBMSG00010003932)
Pecora	ANCESTRAL SPECIES	5	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Percora_a	ANCESTRAL SPECIES	27	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Bovidae	ANCESTRAL SPECIES	5	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422.g	ENSGT00940000159838	ENSGT00940000155422.h	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Bovinae	ANCESTRAL SPECIES	4	ENSGT00390000002738.a	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00940000169457	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422.g	ENSGT00940000159838	ENSGT00940000155422.h	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Bos	ANCESTRAL SPECIES	5	ENSGT00390000002738.a	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00940000169457	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422.g	ENSGT00940000159838	ENSGT00940000155422.h.a	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Bos_a	ANCESTRAL SPECIES	23	ENSGT00940000162046	ENSGT00390000002738.a	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00940000169457	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422.h.b	ENSGT00940000159838	ENSGT00940000155422.h.a	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Domestic yak	MODERN SPECIES	28	RABL6 (ENSBGRG00000006950)	AJM1 (ENSBGRG00000007013)	PHPT1 (ENSBGRG00000007028)	EDF1 (ENSBGRG00000007569)	TRAF2 (ENSBGRG00000007742)	FBXW5 (ENSBGRG00000007884)	ENSBGRG00000007955	LCN12 (ENSBGRG00000008098)	ENSBGRG00000008193	ENSBGRG00000008335	PAXX (ENSBGRG00000008372)	FUT7 (ENSBGRG00000008735)	NPDC1 (ENSBGRG00000008757)	ENTPD2 (ENSBGRG00000008803)	SAPCD2 (ENSBGRG00000009015)	UAP1L1 (ENSBGRG00000009106) ##22	ENSBGRG00000009244	DPP7 (ENSBGRG00000009515)	ENSBGRG00000009709	GRIN1 (ENSBGRG00000009802)	LRRC26 (ENSBGRG00000010173)	TMEM210 (ENSBGRG00000010218)	ANAPC2 (ENSBGRG00000010293)	SSNA1 (ENSBGRG00000010372)	TPRN (ENSBGRG00000010421)	TMEM203 (ENSBGRG00000010550)	NDOR1 (ENSBGRG00000010563)	CYSRT1 (ENSBGRG00000010876)	ENSBGRG00000010906	SLC34A3 (ENSBGRG00000010934)	ENSBGRG00000011047
Bos_b	ANCESTRAL SPECIES	16	ENSGT00390000016543	ENSGT00390000002738.a	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00940000169457	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422.g	ENSGT00940000159838	ENSGT00940000155422.h.a	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Hybrid Bos Indicus	MODERN SPECIES	2	AJM1 (ENSBIXG00005005128)	PHPT1 (ENSBIXG00005029030)	EDF1 (ENSBIXG00005005090)	TRAF2 (ENSBIXG00005005083)	FBXW5 (ENSBIXG00005005055)	ENSBIXG00005005030	ENSBIXG00005028821	PTGDS (ENSBIXG00005028691)	ENSBIXG00005028678	PAXX (ENSBIXG00005028665)	CLIC3 (ENSBIXG00005002415)	FUT7 (ENSBIXG00005006621)	NPDC1 (ENSBIXG00005027511)	ENTPD2 (ENSBIXG00005027498)	ENSBIXG00005027468	UAP1L1 (ENSBIXG00005004725) ##22	ENSBIXG00005027411	DPP7 (ENSBIXG00005027398)	ENSBIXG00005027383	GRIN1 (ENSBIXG00005027297)	LRRC26 (ENSBIXG00005027183)	TMEM210 (ENSBIXG00005027173)	ANAPC2 (ENSBIXG00005027150)	SSNA1 (ENSBIXG00005004655)	ENSBIXG00005027093	TMEM203 (ENSBIXG00005006939)	NDOR1 (ENSBIXG00005004640)	RNF208 (ENSBIXG00005026984)	SLC34A3 (ENSBIXG00005026970)	TUBB4B (ENSBIXG00005026939)	FAM166A (ENSBIXG00005026905)
Cow	MODERN SPECIES	2	PHPT1 (ENSBTAG00000050722)	EDF1 (ENSBTAG00000030302)	TRAF2 (ENSBTAG00000010497)	FBXW5 (ENSBTAG00000010515)	C8G (ENSBTAG00000052909)	LCN12 (ENSBTAG00000039531)	PTGDS (ENSBTAG00000015074)	ENSBTAG00000030296	ENSBTAG00000049497	CLIC3 (ENSBTAG00000015085)	PAXX (ENSBTAG00000015081)	FUT7 (ENSBTAG00000046516)	NPDC1 (ENSBTAG00000046140)	ENTPD2 (ENSBTAG00000048125)	SAPCD2 (ENSBTAG00000047807)	UAP1L1 (ENSBTAG00000048054) ##22	MAN1B1 (ENSBTAG00000046775)	DPP7 (ENSBTAG00000047958)	ENSBTAG00000053827	GRIN1 (ENSBTAG00000047202)	ENSBTAG00000049029	LRRC26 (ENSBTAG00000045734)	TMEM210 (ENSBTAG00000047964)	ANAPC2 (ENSBTAG00000046223)	SSNA1 (ENSBTAG00000046415)	TPRN (ENSBTAG00000047715)	TMEM203 (ENSBTAG00000053425)	NDOR1 (ENSBTAG00000047061)	RNF208 (ENSBTAG00000047357)	CYSRT1 (ENSBTAG00000045711)	RNF224 (ENSBTAG00000046418)
Caprinae	ANCESTRAL SPECIES	27	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422.g	ENSGT00940000159838	ENSGT00940000155422.h	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Goat	MODERN SPECIES	2											ABCA2 (ENSCHIG00000024025)	FUT7 (ENSCHIG00000010111)	NPDC1 (ENSCHIG00000020198)	ENTPD2 (ENSCHIG00000010567)	SAPCD2 (ENSCHIG00000021112)	UAP1L1 (ENSCHIG00000012172) ##22	ENSCHIG00000026566	DPP7 (ENSCHIG00000018221)	ENSCHIG00000016373	GRIN1 (ENSCHIG00000016229)	LRRC26 (ENSCHIG00000013005)	TMEM210 (ENSCHIG00000020970)	ANAPC2 (ENSCHIG00000004602)	SSNA1 (ENSCHIG00000016829)	TPRN (ENSCHIG00000024492)	TMEM203 (ENSCHIG00000008657)	NDOR1 (ENSCHIG00000009768)	RNF208 (ENSCHIG00000016054)	CYSRT1 (ENSCHIG00000025664)	RNF224 (ENSCHIG00000008161)	SLC34A3 (ENSCHIG00000009232)
Rambouillet Sheep	MODERN SPECIES	19	PHPT1 (ENSOARG00020000451)	EDF1 (ENSOARG00020000401)	TRAF2 (ENSOARG00020000385)	FBXW5 (ENSOARG00020000375)	C8G (ENSOARG00020000344)	ENSOARG00020000295	PTGDS (ENSOARG00020000264)	ENSOARG00020000226	PAXX (ENSOARG00020000208)	CLIC3 (ENSOARG00020025212)	ENSOARG00020025152	FUT7 (ENSOARG00020025139)	NPDC1 (ENSOARG00020025118)	ENTPD2 (ENSOARG00020025101)	SAPCD2 (ENSOARG00020025078)	UAP1L1 (ENSOARG00020025053) ##22	ENSOARG00020025034	DPP7 (ENSOARG00020024989)	ENSOARG00020024966	GRIN1 (ENSOARG00020023258)	LRRC26 (ENSOARG00020023178)	TMEM210 (ENSOARG00020023135)	ANAPC2 (ENSOARG00020023059)	SSNA1 (ENSOARG00020023026)	TMEM203 (ENSOARG00020023013)	NDOR1 (ENSOARG00020022952)	RNF208 (ENSOARG00020022906)	SLC34A3 (ENSOARG00020022823)	TUBB4B (ENSOARG00020022799)	FAM166A (ENSOARG00020022733)	STPG3 (ENSOARG00020022596)
Siberian musk deer	MODERN SPECIES	1177							PTGDS (ENSMMSG00000010740)	ENSMMSG00000010795	PAXX (ENSMMSG00000010824)	ENSMMSG00000010885	ENSMMSG00000010929	FUT7 (ENSMMSG00000010967)	NPDC1 (ENSMMSG00000010986)	ENTPD2 (ENSMMSG00000011022)	SAPCD2 (ENSMMSG00000011052)	UAP1L1 (ENSMMSG00000011082) ##22	MAN1B1 (ENSMMSG00000011119)	DPP7 (ENSMMSG00000011172)	LRRC26 (ENSMMSG00000011365)	ANAPC2 (ENSMMSG00000011398)	SSNA1 (ENSMMSG00000011460)	TPRN (ENSMMSG00000011485)	TMEM203 (ENSMMSG00000011512)	NDOR1 (ENSMMSG00000011552)	RNF208 (ENSMMSG00000012074)	CYSRT1 (ENSMMSG00000012085)	RNF224 (ENSMMSG00000012095)	SLC34A3 (ENSMMSG00000012120)	TUBB4B (ENSMMSG00000012157)	FAM166A (ENSMMSG00000012227)	STPG3 (ENSMMSG00000012254)
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	2	ENSCHYG00000021520	ENSCHYG00000020912	ENSCHYG00000020665	ENSCHYG00000020519	ENSCHYG00000020201	ENSCHYG00000020088	ENSCHYG00000020041	ENSCHYG00000019947	ENSCHYG00000019872	ENSCHYG00000019701	ENSCHYG00000019619	ENSCHYG00000019549	ENSCHYG00000019369	ENSCHYG00000019336	ENSCHYG00000019109	ENSCHYG00000019007 ##22	ENSCHYG00000018903	ENSCHYG00000016970	ENSCHYG00000016909	ENSCHYG00000016865	ENSCHYG00000016744	TUBB4B (ENSCHYG00000016588)	ENSCHYG00000016490	ENSCHYG00000016401	ENSCHYG00000016350	ENSCHYG00000016322	ENSCHYG00000016287	ENSCHYG00000016086	ENSCHYG00000015910	ENSCHYG00000015858	ENSCHYG00000015756
Yarkand deer	MODERN SPECIES	2	ENSCHYG00000018699	ENSCHYG00000018311	ENSCHYG00000018151	ENSCHYG00000018107	ENSCHYG00000018072	ENSCHYG00000017539	ENSCHYG00000017439	ENSCHYG00000017343	C8G (ENSCHYG00000017265)	ENSCHYG00000017133	ENSCHYG00000017000	ENSCHYG00000016923	ENSCHYG00000016848	ENSCHYG00000016157	ENSCHYG00000016005	ENSCHYG00000015892 ##22	ENSCHYG00000015656	ENSCHYG00000015336	ENSCHYG00000015280	ENSCHYG00000015251	ENSCHYG00000015152	ENSCHYG00000015091	ENSCHYG00000014973	ENSCHYG00000014805	ENSCHYG00000014381	ENSCHYG00000014334	ENSCHYG00000014308	ENSCHYG00000014124	ENSCHYG00000014017	ENSCHYG00000013939	ENSCHYG00000013672
Camelidae	ANCESTRAL SPECIES	65	ENSGT00940000153116.D	ENSGT00940000163544	ENSGT00390000016002	ENSGT00390000016543	ENSGT00390000002738.a	ENSGT00390000008519	ENSGT00940000156621	ENSGT00440000034309	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Arabian camel	MODERN SPECIES	30	TMEM141 (ENSCDRG00005022285)	CCDC183 (ENSCDRG00005022283)	RABL6 (ENSCDRG00005022282)	AJM1 (ENSCDRG00005022281)	PHPT1 (ENSCDRG00005022280)	EDF1 (ENSCDRG00005022278)	TRAF2 (ENSCDRG00005022277)	C8G (ENSCDRG00005022275)	ENSCDRG00005022274	PAXX (ENSCDRG00005022271)	CLIC3 (ENSCDRG00005022270)	FUT7 (ENSCDRG00005022268)	NPDC1 (ENSCDRG00005022267)	ENTPD2 (ENSCDRG00005022266)	SAPCD2 (ENSCDRG00005022265)	UAP1L1 (ENSCDRG00005022264) ##22	ENSCDRG00005022263	DPP7 (ENSCDRG00005022261)	ENSCDRG00005022260	ENSCDRG00005022259	GRIN1 (ENSCDRG00005022254)	ENSCDRG00005022252	TMEM210 (ENSCDRG00005022250)	ANAPC2 (ENSCDRG00005022249)	SSNA1 (ENSCDRG00005022248)	ENSCDRG00005022247	TMEM203 (ENSCDRG00005022246)	ENSCDRG00005022245	ENSCDRG00005022244	RNF208 (ENSCDRG00005022243)	CYSRT1 (ENSCDRG00005022242)
Laurasiatheria_b	ANCESTRAL SPECIES	11	ENSGT00940000154394.b.a.b	ENSGT00950000183177.a.a.a.b	ENSGT00510000050587	ENSGT00390000003233	ENSGT00680000100126	ENSGT00730000114714	ENSGT00930000151050	ENSGT00510000049510	ENSGT00530000064035.b	ENSGT00390000012318	ENSGT00390000016127	ENSGT00390000008939	ENSGT00940000162780	ENSGT00940000158016.d	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT01100000263542.B.b	ENSGT00440000038604	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00390000000543	ENSGT01050000244868.a.a.b.a.a	ENSGT01100000263580	ENSGT01050000244868.b.b	ENSGT00440000034309	ENSGT00990000203858	ENSGT00730000111276	ENSGT00940000156621
Carnivora	ANCESTRAL SPECIES	18	ENSGT00940000154394.b.a.b	ENSGT00950000183177.a.a.a.b	ENSGT00510000050587	ENSGT00390000003233	ENSGT00680000100126	ENSGT00730000114714	ENSGT00930000151050	ENSGT00510000049510	ENSGT00530000064035.b	ENSGT00390000012318	ENSGT00390000016127	ENSGT00390000008939	ENSGT00940000162780	ENSGT00940000158016.d	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT01100000263542.B.b	ENSGT00440000038604	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00390000000543	ENSGT01050000244868.a.a.b.a.a	ENSGT01100000263580	ENSGT01050000244868.b.b	ENSGT00440000034309	ENSGT00990000203858	ENSGT00730000111276	ENSGT00940000156621
Felidae	ANCESTRAL SPECIES	16	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Panthera	ANCESTRAL SPECIES	55	ENSGT00730000111343	ENSGT00940000154394.b.a.b	ENSGT00950000183177.a.a.a.b	ENSGT00510000050587	ENSGT00390000003233	ENSGT00680000100126	ENSGT00730000114714	ENSGT00930000151050	ENSGT00510000049510	ENSGT00530000064035.b	ENSGT00390000012318	ENSGT00390000016127	ENSGT00390000008939	ENSGT00940000162780	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838
Panthera_a	ANCESTRAL SPECIES	10	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b	ENSGT00730000111343
lion	MODERN SPECIES	204	PHPT1 (ENSPLOG00000017259)	EDF1 (ENSPLOG00000017929)	TRAF2 (ENSPLOG00000018020)	FBXW5 (ENSPLOG00000018088)	C8G (ENSPLOG00000018124)	LCN12 (ENSPLOG00000018194)	PTGDS (ENSPLOG00000018248)	PAXX (ENSPLOG00000018387)	CLIC3 (ENSPLOG00000018419)	ENSPLOG00000018480	ENSPLOG00000018508	FUT7 (ENSPLOG00000018564)	NPDC1 (ENSPLOG00000018593)	ENTPD2 (ENSPLOG00000018686)	SAPCD2 (ENSPLOG00000018833)	UAP1L1 (ENSPLOG00000018898) ##22	MAN1B1 (ENSPLOG00000018970)	LRRC26 (ENSPLOG00000019310)	TMEM210 (ENSPLOG00000019339)	ANAPC2 (ENSPLOG00000019390)	SSNA1 (ENSPLOG00000019532)	TPRN (ENSPLOG00000019575)	TMEM203 (ENSPLOG00000019589)	NDOR1 (ENSPLOG00000019642)	ENSPLOG00000019981	RNF208 (ENSPLOG00000019999)	CYSRT1 (ENSPLOG00000020009)	RNF224 (ENSPLOG00000020021)	SLC34A3 (ENSPLOG00000020050)	TUBB4B (ENSPLOG00000020120)	FAM166A (ENSPLOG00000020170)
leopard	MODERN SPECIES	185	AJM1 (ENSPPRG00000012136)	PHPT1 (ENSPPRG00000006500)	EDF1 (ENSPPRG00000006727)	TRAF2 (ENSPPRG00000006753)	FBXW5 (ENSPPRG00000006770)	ENSPPRG00000006789	C8G (ENSPPRG00000006812)	PTGDS (ENSPPRG00000006844)	LCNL1 (ENSPPRG00000006855)	PAXX (ENSPPRG00000006865)	CLIC3 (ENSPPRG00000006876)	FUT7 (ENSPPRG00000007382)	NPDC1 (ENSPPRG00000007396)	ENTPD2 (ENSPPRG00000007423)	SAPCD2 (ENSPPRG00000007437)	UAP1L1 (ENSPPRG00000007491) ##22
Cat	MODERN SPECIES	244	PHPT1 (ENSFCAG00000022658)	MAMDC4 (ENSFCAG00000025055)	EDF1 (ENSFCAG00000000388)	TRAF2 (ENSFCAG00000000389)	FBXW5 (ENSFCAG00000000391)	C8G (ENSFCAG00000000392)	ENSFCAG00000045771	LCNL1 (ENSFCAG00000027915)	PAXX (ENSFCAG00000000394)	CLIC3 (ENSFCAG00000000395)	ENSFCAG00000049271	FUT7 (ENSFCAG00000044182)	NPDC1 (ENSFCAG00000000398)	ENTPD2 (ENSFCAG00000000399)	SAPCD2 (ENSFCAG00000010490)	UAP1L1 (ENSFCAG00000000401) ##22	ENSFCAG00000038731	DPP7 (ENSFCAG00000008256)	ENSFCAG00000042440	GRIN1 (ENSFCAG00000010251)	LRRC26 (ENSFCAG00000037371)	ANAPC2 (ENSFCAG00000010255)	SSNA1 (ENSFCAG00000026913)	TPRN (ENSFCAG00000031169)	TMEM203 (ENSFCAG00000045552)	NDOR1 (ENSFCAG00000028006)	FAM166A (ENSFCAG00000010270)	ENSFCAG00000049930	CYSRT1 (ENSFCAG00000010266)	SLC34A3 (ENSFCAG00000022972)	RNF224 (ENSFCAG00000042344)
Caniformia	DUPLICATION
Caniformia	DUPLICATION
Caniformia	ANCESTRAL SPECIES	75															ENSGT00390000008072	ENSGT00940000153464.A.a.g.a ##22
Canidae	ANCESTRAL SPECIES	2	ENSGT00390000002738.a	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a.g.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000153464.A.a.g.b ##22	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00390000002738.a	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a.g.a ##22	ENSGT00940000155422.p	ENSGT00940000159838	ENSGT00940000155422.o	ENSGT00940000153464.A.a.g.b ##22	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587
Dingo	MODERN SPECIES	327	PHPT1 (ENSCAFG00020002736)	EDF1 (ENSCAFG00020002800)	TRAF2 (ENSCAFG00020002801)	FBXW5 (ENSCAFG00020002809)	ENSCAFG00020002821	C8G (ENSCAFG00020002826)	LCN12 (ENSCAFG00020002838)	PTGDS (ENSCAFG00020002853)	ENSCAFG00020002860	PAXX (ENSCAFG00020002865)	CLIC3 (ENSCAFG00020002871)	FUT7 (ENSCAFG00020002975)	NPDC1 (ENSCAFG00020002980)	ENTPD2 (ENSCAFG00020002995)	SAPCD2 (ENSCAFG00020003000)	ENSCAFG00020003008 ##22	ENSCAFG00020003019	DPP7 (ENSCAFG00020003061)	ENSCAFG00020003087	ENSCAFG00020003092 ##22	ENSCAFG00020003094	LRRC26 (ENSCAFG00020003097)	ANAPC2 (ENSCAFG00020003103)	SSNA1 (ENSCAFG00020003106)	ENSCAFG00020003108	TMEM203 (ENSCAFG00020003112)	NDOR1 (ENSCAFG00020003114)	RNF208 (ENSCAFG00020003120)	CYSRT1 (ENSCAFG00020003125)	RNF224 (ENSCAFG00020003128)	SLC34A3 (ENSCAFG00020003131)
Dog	MODERN SPECIES	37	PHPT1 (ENSCAFG00845005276)	EDF1 (ENSCAFG00845005198)	TRAF2 (ENSCAFG00845005186)	ENSCAFG00845005180	FBXW5 (ENSCAFG00845005172)	C8G (ENSCAFG00845005165)	LCN12 (ENSCAFG00845005154)	PTGDS (ENSCAFG00845005146)	ENSCAFG00845005131	PAXX (ENSCAFG00845005121)	CLIC3 (ENSCAFG00845025553)	FUT7 (ENSCAFG00845025345)	NPDC1 (ENSCAFG00845025281)	ENTPD2 (ENSCAFG00845025213)	SAPCD2 (ENSCAFG00845025161)	ENSCAFG00845025076 ##22	ENSCAFG00845024994	ENSCAFG00845024843	ENSCAFG00845024757	ENSCAFG00845024688 ##22	ENSCAFG00845024533	ANAPC2 (ENSCAFG00845024357)	SSNA1 (ENSCAFG00845024303)	ANAPC2 (ENSCAFG00845024228)	TMEM203 (ENSCAFG00845024091)	NDOR1 (ENSCAFG00845023868)	ENSCAFG00845023809	RNF208 (ENSCAFG00845023785)	CYSRT1 (ENSCAFG00845023754)	RNF224 (ENSCAFG00845023716)	SLC34A3 (ENSCAFG00845023641)
Caniformia	ANCESTRAL SPECIES	16	ENSGT00730000111343	ENSGT00940000154394.b.a.b	ENSGT00950000183177.a.a.a.b	ENSGT00510000050587	ENSGT00390000003233	ENSGT00680000100126	ENSGT00730000114714	ENSGT00930000151050	ENSGT00510000049510	ENSGT00530000064035.b	ENSGT00390000012318	ENSGT00390000016127	ENSGT00390000008939	ENSGT00940000162780	ENSGT00940000158016.d	ENSGT00940000153464.A.a.g.b ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000153464.A.a.h ##22	ENSGT01100000263542.B.b	ENSGT00440000038604	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00390000000543	ENSGT01050000244868.a.a.b.a.a	ENSGT01100000263580	ENSGT01050000244868.b.b	ENSGT00440000034309	ENSGT00990000203858	ENSGT00730000111276
Canidae	ANCESTRAL SPECIES	2	ENSGT00730000111343	ENSGT00940000154394.b.a.b	ENSGT00950000183177.a.a.a.b	ENSGT00510000050587	ENSGT00390000003233	ENSGT00680000100126	ENSGT00730000114714	ENSGT00930000151050	ENSGT00510000049510	ENSGT00530000064035.b	ENSGT00390000012318	ENSGT00390000016127	ENSGT00390000008939	ENSGT00940000162780	ENSGT00940000158016.d	ENSGT00940000153464.A.a.g.b ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000153464.A.a.g.a ##22	ENSGT00390000008072	ENSGT01100000263542.B.b	ENSGT00440000038604	ENSGT00940000161618	ENSGT00940000161243	ENSGT00390000000543	ENSGT01050000244868.a.a.b.a.a	ENSGT01100000263580	ENSGT01050000244868.b.b	ENSGT00440000034309	ENSGT00990000203858	ENSGT00730000111276
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00390000009524	ENSGT00730000111343	ENSGT00940000154394.b.a.b	ENSGT00950000183177.a.a.a.b	ENSGT00510000050587	ENSGT00390000003233	ENSGT00680000100126	ENSGT00730000114714	ENSGT00930000151050	ENSGT00510000049510	ENSGT00530000064035.b	ENSGT00390000012318	ENSGT00390000016127	ENSGT00940000162780	ENSGT00940000158016.d	ENSGT00940000153464.A.a.g.b ##22	ENSGT00940000155422.o	ENSGT00940000159838	ENSGT00940000155422.p	ENSGT00940000153464.A.a.g.a ##22	ENSGT00390000008072	ENSGT01100000263542.B.b	ENSGT00440000038604	ENSGT00940000161618	ENSGT00940000161243	ENSGT00390000000543	ENSGT01050000244868.a.a.b.a.a	ENSGT01100000263580	ENSGT01050000244868.b.b	ENSGT00440000034309	ENSGT00990000203858
Dingo	MODERN SPECIES	327	NELFB (ENSCAFG00020003154)	STPG3 (ENSCAFG00020003150)	FAM166A (ENSCAFG00020003143)	TUBB4B (ENSCAFG00020003141)	SLC34A3 (ENSCAFG00020003131)	RNF224 (ENSCAFG00020003128)	CYSRT1 (ENSCAFG00020003125)	RNF208 (ENSCAFG00020003120)	NDOR1 (ENSCAFG00020003114)	TMEM203 (ENSCAFG00020003112)	ENSCAFG00020003108	SSNA1 (ENSCAFG00020003106)	ANAPC2 (ENSCAFG00020003103)	LRRC26 (ENSCAFG00020003097)	ENSCAFG00020003094	ENSCAFG00020003092 ##22	ENSCAFG00020003087	DPP7 (ENSCAFG00020003061)	ENSCAFG00020003019	ENSCAFG00020003008 ##22	SAPCD2 (ENSCAFG00020003000)	ENTPD2 (ENSCAFG00020002995)	NPDC1 (ENSCAFG00020002980)	FUT7 (ENSCAFG00020002975)	CLIC3 (ENSCAFG00020002871)	PAXX (ENSCAFG00020002865)	ENSCAFG00020002860	PTGDS (ENSCAFG00020002853)	LCN12 (ENSCAFG00020002838)	C8G (ENSCAFG00020002826)	ENSCAFG00020002821
Dog	MODERN SPECIES	37	NRARP (ENSCAFG00845023292)	STPG3 (ENSCAFG00845023332)	TUBB4B (ENSCAFG00845023509)	FAM166A (ENSCAFG00845023580)	SLC34A3 (ENSCAFG00845023641)	RNF224 (ENSCAFG00845023716)	CYSRT1 (ENSCAFG00845023754)	RNF208 (ENSCAFG00845023785)	ENSCAFG00845023809	NDOR1 (ENSCAFG00845023868)	TMEM203 (ENSCAFG00845024091)	ANAPC2 (ENSCAFG00845024228)	SSNA1 (ENSCAFG00845024303)	ANAPC2 (ENSCAFG00845024357)	ENSCAFG00845024533	ENSCAFG00845024688 ##22	ENSCAFG00845024757	ENSCAFG00845024843	ENSCAFG00845024994	ENSCAFG00845025076 ##22	SAPCD2 (ENSCAFG00845025161)	ENTPD2 (ENSCAFG00845025213)	NPDC1 (ENSCAFG00845025281)	FUT7 (ENSCAFG00845025345)	CLIC3 (ENSCAFG00845025553)	PAXX (ENSCAFG00845005121)	ENSCAFG00845005131	PTGDS (ENSCAFG00845005146)	LCN12 (ENSCAFG00845005154)	C8G (ENSCAFG00845005165)	FBXW5 (ENSCAFG00845005172)
Red fox	MODERN SPECIES	260	STPG3 (ENSVVUG00000029407)	FAM166A (ENSVVUG00000029409)	TUBB4B (ENSVVUG00000029411)	SLC34A3 (ENSVVUG00000029420)	RNF224 (ENSVVUG00000029421)	CYSRT1 (ENSVVUG00000029422)	RNF208 (ENSVVUG00000029423)	NDOR1 (ENSVVUG00000029424)	TMEM203 (ENSVVUG00000029425)	ENSVVUG00000029426	ANAPC2 (ENSVVUG00000029427)	SSNA1 (ENSVVUG00000029453)	TMEM210 (ENSVVUG00000029455)	LRRC26 (ENSVVUG00000029457)	GRIN1 (ENSVVUG00000029460)	UAP1L1 (ENSVVUG00000029468) ##22	MAN1B1 (ENSVVUG00000029474)	DPP7 (ENSVVUG00000029481)
Caniformia_b	ANCESTRAL SPECIES	12	ENSGT00390000009524	ENSGT00730000111343	ENSGT00940000154394.b.a.b	ENSGT00950000183177.a.a.a.b	ENSGT00510000050587	ENSGT00390000003233	ENSGT00680000100126	ENSGT00730000114714	ENSGT00930000151050	ENSGT00510000049510	ENSGT00530000064035.b	ENSGT00390000012318	ENSGT00390000016127	ENSGT00940000162780	ENSGT00940000158016.d	ENSGT00940000153464.A.a.g.b ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000153464.A.a.h ##22	ENSGT00390000008072	ENSGT01100000263542.B.b	ENSGT00440000038604.b	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000161243	ENSGT00390000000543	ENSGT01050000244868.a.a.b.a.a	ENSGT01100000263580	ENSGT01050000244868.b.b	ENSGT00440000034309	ENSGT00990000203858
Ursidae	ANCESTRAL SPECIES	6	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604.b	ENSGT01100000263542.B.b	ENSGT00940000153464.A.a.h ##22	ENSGT00940000153464.A.a.g.b ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Ursus	ANCESTRAL SPECIES	165																ENSGT00940000153464.A.a.g.b ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b	ENSGT00730000111343
Polar bear	MODERN SPECIES	258	LCN8 (ENSUMAG00000023179)	ENSUMAG00000023184	ENSUMAG00000023190	ENSUMAG00000023193	ENSUMAG00000023195	RABL6 (ENSUMAG00000023196)	EDF1 (ENSUMAG00000023197)	TRAF2 (ENSUMAG00000023199)	FBXW5 (ENSUMAG00000023210)	ENSUMAG00000023211	ENSUMAG00000023212	PTGDS (ENSUMAG00000023215)	ENSUMAG00000023216	ENSUMAG00000023221	ENTPD2 (ENSUMAG00000023227)	ENSUMAG00000023237 ##22	ENSUMAG00000023239	ENSUMAG00000023247	ANAPC2 (ENSUMAG00000023248)	SSNA1 (ENSUMAG00000023257)	ENSUMAG00000023258	TMEM203 (ENSUMAG00000023262)	NDOR1 (ENSUMAG00000023264)	RNF208 (ENSUMAG00000023266)	CYSRT1 (ENSUMAG00000023267)	TUBB4B (ENSUMAG00000023274)	FAM166A (ENSUMAG00000023283)	NELFB (ENSUMAG00000023286)	ENSUMAG00000023289	ENSUMAG00000023305	ENTPD8 (ENSUMAG00000023309)
Caniformia	ANCESTRAL SPECIES	16	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00940000153464.A.a.h ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000153464.A.a.g.b ##22	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587
Caniformia_b	ANCESTRAL SPECIES	12	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604.b	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a.h ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000153464.A.a.g.b ##22	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Ursidae	ANCESTRAL SPECIES	6	ENSGT00390000002738.a	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604.b	ENSGT01100000263542.B.b	ENSGT00940000153464.A.a.h ##22	ENSGT00940000153464.A.a.g.b ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Ursus	ANCESTRAL SPECIES	118	ENSGT00390000002738.a	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT00940000169457	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604.b	ENSGT01100000263542.B.b	ENSGT00940000153464.A.a.h ##22
American black bear	MODERN SPECIES	2439									ENSUAMG00000022647	PAXX (ENSUAMG00000022645)	CLIC3 (ENSUAMG00000022644)	ABCA2 (ENSUAMG00000022643)	FUT7 (ENSUAMG00000022642)	NPDC1 (ENSUAMG00000022641)	ENTPD2 (ENSUAMG00000022600)	UAP1L1 (ENSUAMG00000022595) ##22
Mustelinae	ANCESTRAL SPECIES	12	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604.b	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a.h ##22
Ferret	MODERN SPECIES	218	ENSMPUG00000010998	TRAF2 (ENSMPUG00000010992)	FBXW5 (ENSMPUG00000010965)	C8G (ENSMPUG00000010958)	LCN12 (ENSMPUG00000010941)	PTGDS (ENSMPUG00000010878)	ENSMPUG00000010867	PAXX (ENSMPUG00000010856)	CLIC3 (ENSMPUG00000010834)	ABCA2 (ENSMPUG00000010820)	FUT7 (ENSMPUG00000010818)	NPDC1 (ENSMPUG00000010771)	ENTPD2 (ENSMPUG00000010766)	ENSMPUG00000010761	ENSMPUG00000010757	UAP1L1 (ENSMPUG00000010756) ##22
Laurasiatheria_c	ANCESTRAL SPECIES	11	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Equus	ANCESTRAL SPECIES	30	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422.x	ENSGT00940000155422.w.b	ENSGT00940000159838	ENSGT00940000155422.w.a	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587
Horse	MODERN SPECIES	17	LCN15 (ENSECAG00000039055)	CCDC183 (ENSECAG00000018838)	EDF1 (ENSECAG00000012630)	AJM1 (ENSECAG00000034885)	MAMDC4 (ENSECAG00000041933)	TRAF2 (ENSECAG00000013192)	FBXW5 (ENSECAG00000017033)	PTGDS (ENSECAG00000009262)	ENSECAG00000042990	CLIC3 (ENSECAG00000010895)	ABCA2 (ENSECAG00000015652)	FUT7 (ENSECAG00000016839)	NPDC1 (ENSECAG00000028703)	ENTPD2 (ENSECAG00000016865)	SAPCD2 (ENSECAG00000031808)	UAP1L1 (ENSECAG00000021012) ##22	ENSECAG00000022237	DPP7 (ENSECAG00000016273)	ENSECAG00000044290	ENSECAG00000012141	GRIN1 (ENSECAG00000024535)	ANAPC2 (ENSECAG00000019216)	SSNA1 (ENSECAG00000053580)	TPRN (ENSECAG00000023506)	TMEM203 (ENSECAG00000030806)	NDOR1 (ENSECAG00000023940)	CYSRT1 (ENSECAG00000003725)	RNF208 (ENSECAG00000039651)	RNF224 (ENSECAG00000037788)	SLC34A3 (ENSECAG00000000515)	TUBB4B (ENSECAG00000013659)
Donkey	MODERN SPECIES	1	PHPT1 (ENSEASG00005026031)	MAMDC4 (ENSEASG00005017483)	EDF1 (ENSEASG00005017476)	TRAF2 (ENSEASG00005017474)	FBXW5 (ENSEASG00005017472)	ENSEASG00005017470	ENSEASG00005017467	PTGDS (ENSEASG00005017465)	ENSEASG00005017463	PAXX (ENSEASG00005017459)	CLIC3 (ENSEASG00005017451)	ENSEASG00005028238	FUT7 (ENSEASG00005017390)	ENTPD2 (ENSEASG00005017379)	SAPCD2 (ENSEASG00005017376)	UAP1L1 (ENSEASG00005017365) ##22	ENSEASG00005029578	ENSEASG00005017350	ENSEASG00005017354	ENSEASG00005017344	GRIN1 (ENSEASG00005016289)	LRRC26 (ENSEASG00005016252)	ENSEASG00005027656	ANAPC2 (ENSEASG00005016245)	ENSEASG00005025493	ENSEASG00005016238	TMEM203 (ENSEASG00005030909)	NDOR1 (ENSEASG00005016229)	ENSEASG00005036314	RNF208 (ENSEASG00005026612)	RNF224 (ENSEASG00005016225)
Chiroptera	ANCESTRAL SPECIES	8	ENSGT00390000002738.a	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Microchiroptera	ANCESTRAL SPECIES	7	ENSGT00390000002738.a	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Greater horseshoe bat	MODERN SPECIES	3	PHPT1 (ENSRFEG00010005276)	MAMDC4 (ENSRFEG00010005305)	EDF1 (ENSRFEG00010005371)	TRAF2 (ENSRFEG00010005402)	FBXW5 (ENSRFEG00010005451)	C8G (ENSRFEG00010005489)	ENSRFEG00010005554	ENSRFEG00010005623	PAXX (ENSRFEG00010005669)	CLIC3 (ENSRFEG00010005695)	ENSRFEG00010005737	FUT7 (ENSRFEG00010005819)	NPDC1 (ENSRFEG00010005856)	ENTPD2 (ENSRFEG00010005901)	SAPCD2 (ENSRFEG00010005937)	UAP1L1 (ENSRFEG00010005976) ##22	MAN1B1 (ENSRFEG00010006032)	DPP7 (ENSRFEG00010006115)	GRIN1 (ENSRFEG00010006502)	LRRC26 (ENSRFEG00010007590)	TMEM210 (ENSRFEG00010007616)	ANAPC2 (ENSRFEG00010007676)	SSNA1 (ENSRFEG00010007700)	TPRN (ENSRFEG00010007750)	TMEM203 (ENSRFEG00010007781)	NDOR1 (ENSRFEG00010007800)	ENSRFEG00010007881	RNF208 (ENSRFEG00010007900)	CYSRT1 (ENSRFEG00010007918)	RNF224 (ENSRFEG00010007935)	SLC34A3 (ENSRFEG00010007986)
Megabat	MODERN SPECIES	1636					ENSPVAG00000002025	C8G (ENSPVAG00000002029)	ENSPVAG00000002031	ENSPVAG00000002033	ENSPVAG00000002034	PAXX (ENSPVAG00000002040)	CLIC3 (ENSPVAG00000002044)	ABCA2 (ENSPVAG00000002047)	ENSPVAG00000002054	NPDC1 (ENSPVAG00000002057)	SAPCD2 (ENSPVAG00000002061)	ENSPVAG00000002063 ##22	DPP7 (ENSPVAG00000002065)
Euarchontoglires	ANCESTRAL SPECIES	10	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Primates	ANCESTRAL SPECIES	9	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Haplorrhini	ANCESTRAL SPECIES	47	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Simiiformes	ANCESTRAL SPECIES	11	ENSGT00390000008519.x	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Catarrhini	ANCESTRAL SPECIES	13	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00910000147630	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072.f	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00860000136271	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587
Hominoidea	ANCESTRAL SPECIES	19	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00910000147630	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072.f	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00860000136271	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587
Hominidae	ANCESTRAL SPECIES	10	ENSGT00390000008519.x	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072.f	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00860000136271	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	10	ENSGT00390000008519.x	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072.f	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00860000136271	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587
Homo/Pan group	ANCESTRAL SPECIES	16	ENSGT00390000008519.x	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072.f	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00860000136271	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587
Pan	ANCESTRAL SPECIES	18	ENSGT00390000008519.x	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072.f	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00860000136271	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Chimpanzee	MODERN SPECIES	22	EDF1 (ENSPTRG00000021577)	TRAF2 (ENSPTRG00000021578)	FBXW5 (ENSPTRG00000021579)	ENSPTRG00000043752	C8G (ENSPTRG00000021580)	LCN12 (ENSPTRG00000021581)	PTGDS (ENSPTRG00000021582)	ENSPTRG00000051506	PAXX (ENSPTRG00000028979)	CLIC3 (ENSPTRG00000021584)	ABCA2 (ENSPTRG00000044781)	FUT7 (ENSPTRG00000043250)	NPDC1 (ENSPTRG00000021587)	ENTPD2 (ENSPTRG00000021588)	SAPCD2 (ENSPTRG00000047923)	UAP1L1 (ENSPTRG00000021590) ##22	MAN1B1 (ENSPTRG00000021591)	DPP7 (ENSPTRG00000021592)	GRIN1 (ENSPTRG00000021594)	LRRC26 (ENSPTRG00000021595)	TMEM210 (ENSPTRG00000052326)	ANAPC2 (ENSPTRG00000021597)	SSNA1 (ENSPTRG00000021599)	TPRN (ENSPTRG00000021600)	ENSPTRG00000043788	TMEM203 (ENSPTRG00000052099)	NDOR1 (ENSPTRG00000024013)	RNF208 (ENSPTRG00000044389)	CYSRT1 (ENSPTRG00000024338)	RNF224 (ENSPTRG00000039335)	SLC34A3 (ENSPTRG00000023766)
Bonobo	MODERN SPECIES	22	EDF1 (ENSPPAG00000028843)	TRAF2 (ENSPPAG00000002032)	FBXW5 (ENSPPAG00000030876)	ENSPPAG00000040511	C8G (ENSPPAG00000005584)	LCN12 (ENSPPAG00000040460)	PTGDS (ENSPPAG00000041634)	LCNL1 (ENSPPAG00000030939)	PAXX (ENSPPAG00000033365)	CLIC3 (ENSPPAG00000041120)	ABCA2 (ENSPPAG00000042459)	FUT7 (ENSPPAG00000036563)	ENSPPAG00000040449	ENTPD2 (ENSPPAG00000042388)	ENSPPAG00000032210	UAP1L1 (ENSPPAG00000039168) ##22	MAN1B1 (ENSPPAG00000039110)	ENSPPAG00000041221	GRIN1 (ENSPPAG00000030948)	LRRC26 (ENSPPAG00000026790)	TMEM210 (ENSPPAG00000034325)	ANAPC2 (ENSPPAG00000043226)	SSNA1 (ENSPPAG00000025725)	ENSPPAG00000037138	ENSPPAG00000010872	TMEM203 (ENSPPAG00000014126)	NDOR1 (ENSPPAG00000038650)	RNF208 (ENSPPAG00000002712)	ENSPPAG00000040826	RNF224 (ENSPPAG00000016694)	SLC34A3 (ENSPPAG00000027312)
Human	MODERN SPECIES	21	EDF1 (ENSG00000107223)	TRAF2 (ENSG00000127191)	FBXW5 (ENSG00000159069)	C8G (ENSG00000176919)	LCN12 (ENSG00000184925)	PTGDS (ENSG00000107317)	LCNL1 (ENSG00000214402)	PAXX (ENSG00000148362)	CLIC3 (ENSG00000169583)	ABCA2 (ENSG00000107331)	FUT7 (ENSG00000180549)	ENSG00000279073	NPDC1 (ENSG00000107281)	ENTPD2 (ENSG00000054179)	SAPCD2 (ENSG00000186193)	UAP1L1 (ENSG00000197355) ##22	MAN1B1 (ENSG00000177239)	DPP7 (ENSG00000176978)	GRIN1 (ENSG00000176884)	LRRC26 (ENSG00000184709)	ENSG00000261793	TMEM210 (ENSG00000185863)	ANAPC2 (ENSG00000176248)	SSNA1 (ENSG00000176101)	TPRN (ENSG00000176058)	TMEM203 (ENSG00000187713)	NDOR1 (ENSG00000188566)	ENSG00000284976	RNF208 (ENSG00000212864)	CYSRT1 (ENSG00000197191)	RNF224 (ENSG00000233198)
Gorilla	MODERN SPECIES	22	EDF1 (ENSGGOG00000014750)	TRAF2 (ENSGGOG00000007150)	FBXW5 (ENSGGOG00000004350)	ENSGGOG00000043105	C8G (ENSGGOG00000004352)	ENSGGOG00000025961	PTGDS (ENSGGOG00000004362)	LCNL1 (ENSGGOG00000040429)	PAXX (ENSGGOG00000011640)	CLIC3 (ENSGGOG00000011649)	ABCA2 (ENSGGOG00000011658)	FUT7 (ENSGGOG00000011697)	ENSGGOG00000011705	ENTPD2 (ENSGGOG00000011714)	ENSGGOG00000025996	UAP1L1 (ENSGGOG00000007133) ##22	MAN1B1 (ENSGGOG00000001613)	ENSGGOG00000008823	GRIN1 (ENSGGOG00000001780)	LRRC26 (ENSGGOG00000004926)	TMEM210 (ENSGGOG00000001782)	ANAPC2 (ENSGGOG00000011686)	SSNA1 (ENSGGOG00000011694)	TPRN (ENSGGOG00000011700)	ENSGGOG00000038743	TMEM203 (ENSGGOG00000007410)	NDOR1 (ENSGGOG00000026994)	RNF208 (ENSGGOG00000023691)	ENSGGOG00000007405	RNF224 (ENSGGOG00000023355)	SLC34A3 (ENSGGOG00000001886)
Orangutan	MODERN SPECIES	22	AJM1 (ENSPPYG00000032469)	PHPT1 (ENSPPYG00000019787)	ENSPPYG00000019789	TRAF2 (ENSPPYG00000019790)	C8G (ENSPPYG00000019792)	LCN12 (ENSPPYG00000019793)	PTGDS (ENSPPYG00000019795)	LCNL1 (ENSPPYG00000019796)	PAXX (ENSPPYG00000019797)	CLIC3 (ENSPPYG00000019798)	ENSPPYG00000031211	FUT7 (ENSPPYG00000019800)	NPDC1 (ENSPPYG00000019802)	ENTPD2 (ENSPPYG00000019803)	SAPCD2 (ENSPPYG00000019804)	UAP1L1 (ENSPPYG00000019805) ##22	MAN1B1 (ENSPPYG00000019806)	DPP7 (ENSPPYG00000019807)	GRIN1 (ENSPPYG00000019809)	LRRC26 (ENSPPYG00000019810)	TMEM210 (ENSPPYG00000019811)	ANAPC2 (ENSPPYG00000019812)	ENSPPYG00000035048	TPRN (ENSPPYG00000019814)	ENSPPYG00000019815	TMEM203 (ENSPPYG00000019816)	NDOR1 (ENSPPYG00000019817)	ENSPPYG00000032379	RNF208 (ENSPPYG00000019818)	ENSPPYG00000019820	RNF224 (ENSPPYG00000033655)
Gibbon	MODERN SPECIES	23	EDF1 (ENSNLEG00000008605)	TRAF2 (ENSNLEG00000008615)	FBXW5 (ENSNLEG00000008632)	C8G (ENSNLEG00000008662)	LCN12 (ENSNLEG00000008680)	PTGDS (ENSNLEG00000008707)	ENSNLEG00000031130	ENSNLEG00000008746	CLIC3 (ENSNLEG00000008759)	ENSNLEG00000028412	ABCA2 (ENSNLEG00000008770)	FUT7 (ENSNLEG00000008851)	NPDC1 (ENSNLEG00000008855)	ENTPD2 (ENSNLEG00000008893)	SAPCD2 (ENSNLEG00000008908)	UAP1L1 (ENSNLEG00000008911) ##22	MAN1B1 (ENSNLEG00000008929)	DPP7 (ENSNLEG00000008967)	GRIN1 (ENSNLEG00000009062)	LRRC26 (ENSNLEG00000009100)	TMEM210 (ENSNLEG00000009102)	ANAPC2 (ENSNLEG00000009105)	SSNA1 (ENSNLEG00000009118)	ENSNLEG00000009121	TMEM203 (ENSNLEG00000032750)	NDOR1 (ENSNLEG00000009137)	CYSRT1 (ENSNLEG00000018696)	RNF224 (ENSNLEG00000030401)	SLC34A3 (ENSNLEG00000009144)	TUBB4B (ENSNLEG00000028312)	FAM166A (ENSNLEG00000009167)
Cercopithecidae	ANCESTRAL SPECIES	9	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00940000166200	ENSGT00390000000543	ENSGT00940000161243	ENSGT00910000147630	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072.f	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00860000136271	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Cercopithecinae	ANCESTRAL SPECIES	12	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00940000166200	ENSGT00390000000543	ENSGT00940000161243	ENSGT00910000147630	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072.f	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Vervet Monkey	MODERN SPECIES	3	PHPT1 (ENSCSAG00000016037)	MAMDC4 (ENSCSAG00000016066)	EDF1 (ENSCSAG00000016077)	TRAF2 (ENSCSAG00000016084)	FBXW5 (ENSCSAG00000016087)	C8G (ENSCSAG00000016093)	LCN12 (ENSCSAG00000016096)	PTGDS (ENSCSAG00000016116)	PAXX (ENSCSAG00000016133)	CLIC3 (ENSCSAG00000016143)	ABCA2 (ENSCSAG00000016316)	FUT7 (ENSCSAG00000019683)	NPDC1 (ENSCSAG00000016430)	ENTPD2 (ENSCSAG00000016437)	SAPCD2 (ENSCSAG00000016450)	UAP1L1 (ENSCSAG00000016457) ##22	MAN1B1 (ENSCSAG00000016484)	DPP7 (ENSCSAG00000016487)	GRIN1 (ENSCSAG00000016511)	LRRC26 (ENSCSAG00000016505)	TMEM210 (ENSCSAG00000016514)	ANAPC2 (ENSCSAG00000016520)	SSNA1 (ENSCSAG00000016524)	TPRN (ENSCSAG00000016532)	TMEM203 (ENSCSAG00000019682)	NDOR1 (ENSCSAG00000016571)	RNF208 (ENSCSAG00000019681)	CYSRT1 (ENSCSAG00000019680)	SLC34A3 (ENSCSAG00000016602)	TUBB4B (ENSCSAG00000016610)	FAM166A (ENSCSAG00000016618)
Cercopithecinae_a	ANCESTRAL SPECIES	12	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00940000166200	ENSGT00390000000543	ENSGT00940000161243	ENSGT00910000147630	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072.f.d	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Cercopithecinae_b	ANCESTRAL SPECIES	7	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00940000166200	ENSGT00390000000543	ENSGT00940000161243	ENSGT00910000147630	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072.f.d	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Olive baboon	MODERN SPECIES	4	RABL6 (ENSPANG00000026165)	AJM1 (ENSPANG00000051433)	ENSPANG00000042007	ENSPANG00000026162	TRAF2 (ENSPANG00000026161)	FBXW5 (ENSPANG00000026160)	C8G (ENSPANG00000026258)	LCN12 (ENSPANG00000026259)	PTGDS (ENSPANG00000026267)	PAXX (ENSPANG00000026266)	CLIC3 (ENSPANG00000026265)	FUT7 (ENSPANG00000043249)	NPDC1 (ENSPANG00000026262)	ENTPD2 (ENSPANG00000026261)	ENSPANG00000026260	UAP1L1 (ENSPANG00000026288) ##22	ENSPANG00000047739	GRIN1 (ENSPANG00000026295)	LRRC26 (ENSPANG00000026294)	TMEM210 (ENSPANG00000026293)	ANAPC2 (ENSPANG00000026291)	SSNA1 (ENSPANG00000026290)	ENSPANG00000037616	TMEM203 (ENSPANG00000019792)	ENSPANG00000041143	RNF208 (ENSPANG00000014062)	CYSRT1 (ENSPANG00000001583)	SLC34A3 (ENSPANG00000026343)	TUBB4B (ENSPANG00000016083)	FAM166A (ENSPANG00000026341)	STPG3 (ENSPANG00000026340)
Cercopithecinae_d	ANCESTRAL SPECIES	59	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00940000166200	ENSGT00390000000543	ENSGT00940000161243	ENSGT00910000147630	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072.f.d	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Sooty mangabey	MODERN SPECIES	572	TRAF2 (ENSCATG00000000039)	FBXW5 (ENSCATG00000007828)	ENSCATG00000033500	C8G (ENSCATG00000033528)	ENSCATG00000043845	PTGDS (ENSCATG00000020005)	ENSCATG00000038562	PAXX (ENSCATG00000042889)	CLIC3 (ENSCATG00000045375)	ENSCATG00000007111	ABCA2 (ENSCATG00000042617)	FUT7 (ENSCATG00000037235)	NPDC1 (ENSCATG00000029068)	ENTPD2 (ENSCATG00000039126)	SAPCD2 (ENSCATG00000045112)	UAP1L1 (ENSCATG00000033693) ##22	MAN1B1 (ENSCATG00000032737)	DPP7 (ENSCATG00000041366)	GRIN1 (ENSCATG00000041954)	LRRC26 (ENSCATG00000045338)	TMEM210 (ENSCATG00000039079)	ANAPC2 (ENSCATG00000040018)	SSNA1 (ENSCATG00000029507)	TPRN (ENSCATG00000044806)	TMEM203 (ENSCATG00000018034)	NDOR1 (ENSCATG00000022392)	RNF208 (ENSCATG00000014151)	CYSRT1 (ENSCATG00000040023)	RNF224 (ENSCATG00000040152)	SLC34A3 (ENSCATG00000045084)	TUBB4B (ENSCATG00000036347)
Drill	MODERN SPECIES	918	FBXW5 (ENSMLEG00000003995)	C8G (ENSMLEG00000041653)	ENSMLEG00000017866	LCN12 (ENSMLEG00000019326)	PTGDS (ENSMLEG00000034396)	ENSMLEG00000022907	PAXX (ENSMLEG00000042499)	CLIC3 (ENSMLEG00000032408)	ENSMLEG00000000769	ENSMLEG00000031764	ENSMLEG00000031642	FUT7 (ENSMLEG00000041992)	NPDC1 (ENSMLEG00000038231)	ENTPD2 (ENSMLEG00000042300)	SAPCD2 (ENSMLEG00000031929)	UAP1L1 (ENSMLEG00000040116) ##22	MAN1B1 (ENSMLEG00000011326)	ENSMLEG00000034409	ENSMLEG00000033661	ENSMLEG00000003923	TMEM210 (ENSMLEG00000040784)	ANAPC2 (ENSMLEG00000005040)	SSNA1 (ENSMLEG00000042628)	TPRN (ENSMLEG00000036328)	NDOR1 (ENSMLEG00000035151)	TMEM203 (ENSMLEG00000016017)	RNF208 (ENSMLEG00000027821)	CYSRT1 (ENSMLEG00000025831)	RNF224 (ENSMLEG00000032575)	SLC34A3 (ENSMLEG00000043317)	ENSMLEG00000008939
Macaca	ANCESTRAL SPECIES	10	ENSGT00940000162046	ENSGT00390000008519.x	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072.f.c.a	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Macaca_a	ANCESTRAL SPECIES	10	ENSGT00390000002738.a.i.a	ENSGT00940000162046	ENSGT00390000008519.x	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072.f.c.a	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Crab-eating macaque	MODERN SPECIES	6	CCDC183 (ENSMFAG00000007280)	ENSMFAG00000065092	ENSMFAG00000056778	ENSMFAG00000043136	PHPT1 (ENSMFAG00000000240)	MAMDC4 (ENSMFAG00000000794)	ENSMFAG00000003426	PTGDS (ENSMFAG00000003811)	CLIC3 (ENSMFAG00000063525)	FUT7 (ENSMFAG00000031638)	PAXX (ENSMFAG00000029287)	NPDC1 (ENSMFAG00000003246)	ENTPD2 (ENSMFAG00000043619)	ENSMFAG00000063821	ENSMFAG00000065691	ENSMFAG00000031392 ##22	MAN1B1 (ENSMFAG00000042595)	DPP7 (ENSMFAG00000042206)	ENSMFAG00000060355	GRIN1 (ENSMFAG00000030914)	LRRC26 (ENSMFAG00000059441)	TMEM210 (ENSMFAG00000037356)	ANAPC2 (ENSMFAG00000039218)	SSNA1 (ENSMFAG00000003411)	TMEM203 (ENSMFAG00000060923)	NDOR1 (ENSMFAG00000039422)	CYSRT1 (ENSMFAG00000040805)	RNF224 (ENSMFAG00000001161)	SLC34A3 (ENSMFAG00000040546)	TUBB4B (ENSMFAG00000021762)	FAM166A (ENSMFAG00000033692)
Rhesus	MODERN SPECIES	6	AJM1 (ENSMMUG00000005046)	PHPT1 (ENSMMUG00000005047)	EDF1 (ENSMMUG00000005051)	TRAF2 (ENSMMUG00000011527)	FBXW5 (ENSMMUG00000011528)	C8G (ENSMMUG00000032142)	LCN12 (ENSMMUG00000021428)	PTGDS (ENSMMUG00000052688)	PAXX (ENSMMUG00000021432)	CLIC3 (ENSMMUG00000021431)	ABCA2 (ENSMMUG00000021434)	FUT7 (ENSMMUG00000040671)	NPDC1 (ENSMMUG00000017860)	ENTPD2 (ENSMMUG00000005056)	SAPCD2 (ENSMMUG00000056519)	UAP1L1 (ENSMMUG00000047506) ##22	MAN1B1 (ENSMMUG00000008036)	DPP7 (ENSMMUG00000022750)	GRIN1 (ENSMMUG00000001661)	LRRC26 (ENSMMUG00000063598)	TMEM210 (ENSMMUG00000001667)	ANAPC2 (ENSMMUG00000001669)	SSNA1 (ENSMMUG00000047902)	TPRN (ENSMMUG00000001677)	TMEM203 (ENSMMUG00000046202)	NDOR1 (ENSMMUG00000018107)	RNF208 (ENSMMUG00000023185)	CYSRT1 (ENSMMUG00000050131)	SLC34A3 (ENSMMUG00000060673)	FAM166A (ENSMMUG00000060507)	STPG3 (ENSMMUG00000032151)
Pig-tailed macaque	MODERN SPECIES	490	MAMDC4 (ENSMNEG00000033930)	EDF1 (ENSMNEG00000036130)	TRAF2 (ENSMNEG00000020681)	FBXW5 (ENSMNEG00000032355)	ENSMNEG00000039377	C8G (ENSMNEG00000029073)	LCN12 (ENSMNEG00000029550)	PTGDS (ENSMNEG00000034581)	CLIC3 (ENSMNEG00000033341)	PAXX (ENSMNEG00000038986)	ABCA2 (ENSMNEG00000036389)	FUT7 (ENSMNEG00000029936)	NPDC1 (ENSMNEG00000039804)	ENTPD2 (ENSMNEG00000042679)	SAPCD2 (ENSMNEG00000030414)	UAP1L1 (ENSMNEG00000037452) ##22	MAN1B1 (ENSMNEG00000044728)	DPP7 (ENSMNEG00000029772)	GRIN1 (ENSMNEG00000031771)	LRRC26 (ENSMNEG00000045226)	ANAPC2 (ENSMNEG00000028093)	TMEM210 (ENSMNEG00000015555)	SSNA1 (ENSMNEG00000044192)	TPRN (ENSMNEG00000038162)	TMEM203 (ENSMNEG00000024232)	NDOR1 (ENSMNEG00000000380)	RNF208 (ENSMNEG00000016264)	CYSRT1 (ENSMNEG00000037699)	RNF224 (ENSMNEG00000033270)	SLC34A3 (ENSMNEG00000043166)	TUBB4B (ENSMNEG00000038300)
Rhinopithecus	ANCESTRAL SPECIES	2	ENSGT00390000002738.a.i.b	ENSGT00940000162046	ENSGT00390000008519.x	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072.f.b	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00860000136271	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Golden snub-nosed monkey	MODERN SPECIES	1695	ENSRROG00000011056	MAMDC4 (ENSRROG00000028994)	EDF1 (ENSRROG00000036689)	TRAF2 (ENSRROG00000033044)	FBXW5 (ENSRROG00000029663)	C8G (ENSRROG00000042966)	LCN12 (ENSRROG00000038709)	PTGDS (ENSRROG00000036556)	PAXX (ENSRROG00000044963)	CLIC3 (ENSRROG00000042809)	ABCA2 (ENSRROG00000045181)	FUT7 (ENSRROG00000039808)	NPDC1 (ENSRROG00000014333)	ENTPD2 (ENSRROG00000040483)	SAPCD2 (ENSRROG00000039152)	ENSRROG00000039065 ##22	MAN1B1 (ENSRROG00000044497)	DPP7 (ENSRROG00000030437)	GRIN1 (ENSRROG00000034371)	LRRC26 (ENSRROG00000044845)	TMEM210 (ENSRROG00000042134)	ANAPC2 (ENSRROG00000035823)	SSNA1 (ENSRROG00000030836)	TPRN (ENSRROG00000039355)	ENSRROG00000038803	TMEM203 (ENSRROG00000011174)	NDOR1 (ENSRROG00000033862)	RNF208 (ENSRROG00000001430)	CYSRT1 (ENSRROG00000036230)	RNF224 (ENSRROG00000017119)	SLC34A3 (ENSRROG00000033517)
Black snub-nosed monkey	MODERN SPECIES	1117	ENSRBIG00000031349	MAMDC4 (ENSRBIG00000038570)	EDF1 (ENSRBIG00000028839)	TRAF2 (ENSRBIG00000039392)	FBXW5 (ENSRBIG00000028436)	C8G (ENSRBIG00000007301)	LCN12 (ENSRBIG00000041425)	PTGDS (ENSRBIG00000031470)	PAXX (ENSRBIG00000041701)	CLIC3 (ENSRBIG00000043941)	ABCA2 (ENSRBIG00000043665)	FUT7 (ENSRBIG00000027396)	NPDC1 (ENSRBIG00000032097)	ENTPD2 (ENSRBIG00000032585)	SAPCD2 (ENSRBIG00000017086)	ENSRBIG00000036004 ##22	MAN1B1 (ENSRBIG00000041575)	DPP7 (ENSRBIG00000014433)	GRIN1 (ENSRBIG00000042946)	LRRC26 (ENSRBIG00000040178)	TMEM210 (ENSRBIG00000041900)	ANAPC2 (ENSRBIG00000041051)	SSNA1 (ENSRBIG00000010941)	TPRN (ENSRBIG00000043110)	ENSRBIG00000014667	TMEM203 (ENSRBIG00000004461)	NDOR1 (ENSRBIG00000035758)	ENSRBIG00000033883	RNF224 (ENSRBIG00000043650)	SLC34A3 (ENSRBIG00000037164)	ENSRBIG00000038236
Platyrrhini	ANCESTRAL SPECIES	8	ENSGT00390000008519.x	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00940000166200	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Cebidae	ANCESTRAL SPECIES	7	ENSGT00940000162046	ENSGT00390000008519.x	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Cebidae_a	ANCESTRAL SPECIES	50	ENSGT00940000162046	ENSGT00390000008519.x	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000159838	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Capuchin	MODERN SPECIES	339	MAMDC4 (ENSCCAG00000022947)	EDF1 (ENSCCAG00000020655)	TRAF2 (ENSCCAG00000027650)	ENSCCAG00000022896	FBXW5 (ENSCCAG00000021144)	C8G (ENSCCAG00000029043)	LCN12 (ENSCCAG00000037477)	PTGDS (ENSCCAG00000027009)	PAXX (ENSCCAG00000030296)	CLIC3 (ENSCCAG00000029545)	ABCA2 (ENSCCAG00000034401)	FUT7 (ENSCCAG00000030820)	NPDC1 (ENSCCAG00000026896)	ENTPD2 (ENSCCAG00000027749)	SAPCD2 (ENSCCAG00000024653)	UAP1L1 (ENSCCAG00000022093) ##22	MAN1B1 (ENSCCAG00000036958)	DPP7 (ENSCCAG00000030515)	GRIN1 (ENSCCAG00000021626)	LRRC26 (ENSCCAG00000031945)	TMEM210 (ENSCCAG00000029675)	ANAPC2 (ENSCCAG00000035434)	SSNA1 (ENSCCAG00000023438)	TPRN (ENSCCAG00000023747)	TMEM203 (ENSCCAG00000018771)	NDOR1 (ENSCCAG00000023502)	RNF208 (ENSCCAG00000012897)	CYSRT1 (ENSCCAG00000019773)	RNF224 (ENSCCAG00000035489)	SLC34A3 (ENSCCAG00000036657)	FAM166A (ENSCCAG00000036261)
Bolivian squirrel monkey	MODERN SPECIES	186	MAMDC4 (ENSSBOG00000035516)	EDF1 (ENSSBOG00000021626)	TRAF2 (ENSSBOG00000028404)	FBXW5 (ENSSBOG00000033854)	ENSSBOG00000027471	C8G (ENSSBOG00000026427)	LCN12 (ENSSBOG00000034929)	PTGDS (ENSSBOG00000026927)	PAXX (ENSSBOG00000027322)	CLIC3 (ENSSBOG00000024337)	ABCA2 (ENSSBOG00000024701)	FUT7 (ENSSBOG00000034082)	NPDC1 (ENSSBOG00000027848)	ENTPD2 (ENSSBOG00000021811)	ENSSBOG00000030449	UAP1L1 (ENSSBOG00000018978) ##22	MAN1B1 (ENSSBOG00000019561)	DPP7 (ENSSBOG00000024015)	GRIN1 (ENSSBOG00000035050)	TMEM210 (ENSSBOG00000026440)	ANAPC2 (ENSSBOG00000029954)	SSNA1 (ENSSBOG00000028556)	TPRN (ENSSBOG00000028335)	TMEM203 (ENSSBOG00000010685)	NDOR1 (ENSSBOG00000025055)	RNF208 (ENSSBOG00000019713)	CYSRT1 (ENSSBOG00000029686)	RNF224 (ENSSBOG00000023099)	SLC34A3 (ENSSBOG00000023135)	TUBB4B (ENSSBOG00000024919)	FAM166A (ENSSBOG00000029134)
Marmoset	MODERN SPECIES		TRAF2 (ENSCJAG00000011179)	PHPT1 (ENSCJAG00000011097)	MAMDC4 (ENSCJAG00000011117)	ENSCJAG00000011166	FBXW5 (ENSCJAG00000048064)	C8G (ENSCJAG00000011199)	LCN12 (ENSCJAG00000011213)	ENSCJAG00000011224	PAXX (ENSCJAG00000052807)	CLIC3 (ENSCJAG00000012814)	FUT7 (ENSCJAG00000012851)	NPDC1 (ENSCJAG00000012859)	TUBB4B (ENSCJAG00000041742)	ENTPD2 (ENSCJAG00000037121)	SAPCD2 (ENSCJAG00000012905)	UAP1L1 (ENSCJAG00000012920) ##22	MAN1B1 (ENSCJAG00000012934)	DPP7 (ENSCJAG00000012949)	GRIN1 (ENSCJAG00000012981)	LRRC26 (ENSCJAG00000013014)	TMEM210 (ENSCJAG00000013022)	ANAPC2 (ENSCJAG00000013025)	SSNA1 (ENSCJAG00000080463)	TPRN (ENSCJAG00000070096)	TMEM203 (ENSCJAG00000002165)	NDOR1 (ENSCJAG00000013075)	RNF208 (ENSCJAG00000013109)	CYSRT1 (ENSCJAG00000013115)	RNF224 (ENSCJAG00000023024)	FAM166A (ENSCJAG00000013129)	STPG3 (ENSCJAG00000013136)
Mas night monkey	MODERN SPECIES	540	EDF1 (ENSANAG00000004851)	TRAF2 (ENSANAG00000034527)	FBXW5 (ENSANAG00000038194)	ENSANAG00000024923	C8G (ENSANAG00000023297)	ENSANAG00000034930	PTGDS (ENSANAG00000035287)	ENSANAG00000021710	PAXX (ENSANAG00000021834)	CLIC3 (ENSANAG00000021998)	ABCA2 (ENSANAG00000028378)	FUT7 (ENSANAG00000030157)	NPDC1 (ENSANAG00000032327)	ENTPD2 (ENSANAG00000038128)	SAPCD2 (ENSANAG00000021517)	UAP1L1 (ENSANAG00000023579) ##22	MAN1B1 (ENSANAG00000020480)	DPP7 (ENSANAG00000033637)	GRIN1 (ENSANAG00000029032)	LRRC26 (ENSANAG00000028967)	TMEM210 (ENSANAG00000029890)	ANAPC2 (ENSANAG00000032034)	SSNA1 (ENSANAG00000029404)	TPRN (ENSANAG00000037684)	TMEM203 (ENSANAG00000019915)	NDOR1 (ENSANAG00000027780)	ENSANAG00000019678	CYSRT1 (ENSANAG00000033756)	RNF224 (ENSANAG00000033789)	SLC34A3 (ENSANAG00000026188)	ENSANAG00000037571
Tarsier	MODERN SPECIES	1643																UAP1L1 (ENSTSYG00000028074) ##22
Strepsirrhini	ANCESTRAL SPECIES	8	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Lemuriformes	ANCESTRAL SPECIES	12	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Lemuriformes_a	ANCESTRAL SPECIES	2	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00390000016760	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587
Coquerels sifaka	MODERN SPECIES	599	MAMDC4 (ENSPCOG00000027334)	EDF1 (ENSPCOG00000009350)	TRAF2 (ENSPCOG00000019294)	FBXW5 (ENSPCOG00000017416)	C8G (ENSPCOG00000022183)	LCN12 (ENSPCOG00000018067)	PTGDS (ENSPCOG00000026041)	LCNL1 (ENSPCOG00000020674)	PAXX (ENSPCOG00000019383)	CLIC3 (ENSPCOG00000015177)	ABCA2 (ENSPCOG00000021211)	FUT7 (ENSPCOG00000022422)	NPDC1 (ENSPCOG00000015086)	ENTPD2 (ENSPCOG00000024523)	SAPCD2 (ENSPCOG00000009183)	UAP1L1 (ENSPCOG00000022537) ##22	DPP7 (ENSPCOG00000015154)	MAN1B1 (ENSPCOG00000023379)	GRIN1 (ENSPCOG00000022220)	LRRC26 (ENSPCOG00000025803)	TMEM210 (ENSPCOG00000005239)	ANAPC2 (ENSPCOG00000016551)	SSNA1 (ENSPCOG00000022436)	TPRN (ENSPCOG00000021944)	TMEM203 (ENSPCOG00000011268)	NDOR1 (ENSPCOG00000017736)	RNF208 (ENSPCOG00000026627)	CYSRT1 (ENSPCOG00000025629)	RNF224 (ENSPCOG00000014998)	SLC34A3 (ENSPCOG00000015740)	TUBB4B (ENSPCOG00000021987)
Greater bamboo lemur	MODERN SPECIES	293	PHPT1 (ENSPSMG00000006952)	EDF1 (ENSPSMG00000006917)	TRAF2 (ENSPSMG00000006893)	FBXW5 (ENSPSMG00000006883)	C8G (ENSPSMG00000006875)	LCN12 (ENSPSMG00000006863)	PTGDS (ENSPSMG00000006847)	PAXX (ENSPSMG00000006835)	CLIC3 (ENSPSMG00000006804)	ENSPSMG00000006793	ENSPSMG00000006787	FUT7 (ENSPSMG00000006780)	ENSPSMG00000006750	ENTPD2 (ENSPSMG00000006743)	SAPCD2 (ENSPSMG00000006725)	UAP1L1 (ENSPSMG00000006715) ##22	DPP7 (ENSPSMG00000006685)	MAN1B1 (ENSPSMG00000006650)	ENSPSMG00000006623	ENSPSMG00000006616	ENSPSMG00000006611	LRRC26 (ENSPSMG00000006604)	TMEM210 (ENSPSMG00000006598)	ANAPC2 (ENSPSMG00000006596)	SSNA1 (ENSPSMG00000006574)	ENSPSMG00000006571	TMEM203 (ENSPSMG00000006569)	NDOR1 (ENSPSMG00000006547)	ENSPSMG00000006512	RNF208 (ENSPSMG00000006509)	CYSRT1 (ENSPSMG00000006502)
Mouse lemur	MODERN SPECIES	1	ENSMICG00000016476	MAMDC4 (ENSMICG00000016485)	EDF1 (ENSMICG00000016498)	TRAF2 (ENSMICG00000045680)	FBXW5 (ENSMICG00000033952)	C8G (ENSMICG00000029632)	LCN12 (ENSMICG00000043817)	PTGDS (ENSMICG00000034872)	PAXX (ENSMICG00000043009)	CLIC3 (ENSMICG00000029042)	ABCA2 (ENSMICG00000033228)	FUT7 (ENSMICG00000030899)	NPDC1 (ENSMICG00000033933)	ENTPD2 (ENSMICG00000008859)	SAPCD2 (ENSMICG00000046803)	UAP1L1 (ENSMICG00000036839) ##22	DPP7 (ENSMICG00000006205)	MAN1B1 (ENSMICG00000037275)	GRIN1 (ENSMICG00000035705)	LRRC26 (ENSMICG00000042486)	TMEM210 (ENSMICG00000006065)	ANAPC2 (ENSMICG00000006069)	SSNA1 (ENSMICG00000046295)	TPRN (ENSMICG00000006079)	TMEM203 (ENSMICG00000033917)	NDOR1 (ENSMICG00000006082)	RNF208 (ENSMICG00000037815)	CYSRT1 (ENSMICG00000045827)	RNF224 (ENSMICG00000043812)	SLC34A3 (ENSMICG00000010933)	TUBB4B (ENSMICG00000031249)
Bushbaby	MODERN SPECIES	202	PHPT1 (ENSOGAG00000032005)	MAMDC4 (ENSOGAG00000016460)	TRAF2 (ENSOGAG00000013187)	FBXW5 (ENSOGAG00000013190)	C8G (ENSOGAG00000013195)	LCN12 (ENSOGAG00000030577)	PTGDS (ENSOGAG00000013197)	ENSOGAG00000025651	PAXX (ENSOGAG00000013200)	CLIC3 (ENSOGAG00000013205)	ABCA2 (ENSOGAG00000032674)	FUT7 (ENSOGAG00000031745)	NPDC1 (ENSOGAG00000002689)	ENTPD2 (ENSOGAG00000002692)	SAPCD2 (ENSOGAG00000034370)	UAP1L1 (ENSOGAG00000004161) ##22	DPP7 (ENSOGAG00000014568)	ENSOGAG00000029815	GRIN1 (ENSOGAG00000026952)	LRRC26 (ENSOGAG00000025893)	TMEM210 (ENSOGAG00000005906)	ANAPC2 (ENSOGAG00000005908)	SSNA1 (ENSOGAG00000005914)	TPRN (ENSOGAG00000033258)	TMEM203 (ENSOGAG00000028885)	NDOR1 (ENSOGAG00000005920)	RNF208 (ENSOGAG00000005922)	CYSRT1 (ENSOGAG00000028170)	SLC34A3 (ENSOGAG00000005923)	TUBB4B (ENSOGAG00000005927)	FAM166A (ENSOGAG00000005930)
Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Glires	ANCESTRAL SPECIES	9	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Rodentia	ANCESTRAL SPECIES	9	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Hystricomorpha	ANCESTRAL SPECIES	7	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	5	ENSGT00390000002738.a	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Guinea pig	MODERN SPECIES	18	ENSCPOG00000033948	PHPT1 (ENSCPOG00000032818)	EDF1 (ENSCPOG00000020393)	TRAF2 (ENSCPOG00000004243)	FBXW5 (ENSCPOG00000002830)	C8G (ENSCPOG00000002834)	ENSCPOG00000022323	PTGDS (ENSCPOG00000033226)	PAXX (ENSCPOG00000019861)	CLIC3 (ENSCPOG00000036472)	ABCA2 (ENSCPOG00000014498)	FUT7 (ENSCPOG00000032043)	NPDC1 (ENSCPOG00000014094)	ENTPD2 (ENSCPOG00000023108)	SAPCD2 (ENSCPOG00000009347)	UAP1L1 (ENSCPOG00000009344) ##22	DPP7 (ENSCPOG00000019270)	MAN1B1 (ENSCPOG00000023581)	GRIN1 (ENSCPOG00000012581)	LRRC26 (ENSCPOG00000031975)	TMEM210 (ENSCPOG00000019860)	ANAPC2 (ENSCPOG00000009756)	SSNA1 (ENSCPOG00000034909)	TPRN (ENSCPOG00000034478)	TMEM203 (ENSCPOG00000023800)	NDOR1 (ENSCPOG00000009779)	RNF208 (ENSCPOG00000036003)	CYSRT1 (ENSCPOG00000026441)	SLC34A3 (ENSCPOG00000009791)	TUBB4B (ENSCPOG00000031843)	FAM166A (ENSCPOG00000009796)
Hystricomorpha_b	ANCESTRAL SPECIES	36	ENSGT00390000016543	ENSGT00390000002738.a	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Degu	MODERN SPECIES	164	AJM1 (ENSODEG00000015654)	PHPT1 (ENSODEG00000015162)	MAMDC4 (ENSODEG00000014929)	ENSODEG00000015447	TRAF2 (ENSODEG00000015533)	ENSODEG00000014724	LCN12 (ENSODEG00000014923)	PTGDS (ENSODEG00000015463)	PAXX (ENSODEG00000015128)	CLIC3 (ENSODEG00000014543)	ABCA2 (ENSODEG00000015251)	FUT7 (ENSODEG00000020269)	NPDC1 (ENSODEG00000014632)	ENTPD2 (ENSODEG00000014369)	SAPCD2 (ENSODEG00000015491)	UAP1L1 (ENSODEG00000014947) ##22	DPP7 (ENSODEG00000014505)	MAN1B1 (ENSODEG00000014488)	GRIN1 (ENSODEG00000016112)	LRRC26 (ENSODEG00000013944)	TMEM210 (ENSODEG00000014471)	ANAPC2 (ENSODEG00000015025)	SSNA1 (ENSODEG00000015066)	TPRN (ENSODEG00000014622)	NDOR1 (ENSODEG00000015210)	ENSODEG00000020361	SLC34A3 (ENSODEG00000014187)	TUBB4B (ENSODEG00000015427)	FAM166A (ENSODEG00000014315)	STPG3 (ENSODEG00000014179)	NELFB (ENSODEG00000015049)
Long-tailed chinchilla	MODERN SPECIES	220	RABL6 (ENSCLAG00000005796)	AJM1 (ENSCLAG00000006750)	PHPT1 (ENSCLAG00000006935)	MAMDC4 (ENSCLAG00000007572)	ENSCLAG00000009894	TRAF2 (ENSCLAG00000010303)	FBXW5 (ENSCLAG00000006688)	LCN12 (ENSCLAG00000006537)	PTGDS (ENSCLAG00000006819)	PAXX (ENSCLAG00000007451)	CLIC3 (ENSCLAG00000007954)	ABCA2 (ENSCLAG00000008162)	FUT7 (ENSCLAG00000013275)	NPDC1 (ENSCLAG00000004406)	ENTPD2 (ENSCLAG00000006261)	UAP1L1 (ENSCLAG00000008188) ##22	DPP7 (ENSCLAG00000008918)	MAN1B1 (ENSCLAG00000013391)	GRIN1 (ENSCLAG00000008386)	LRRC26 (ENSCLAG00000004796)	TMEM210 (ENSCLAG00000004973)	ANAPC2 (ENSCLAG00000005987)	SSNA1 (ENSCLAG00000004612)	TPRN (ENSCLAG00000007574)	TMEM203 (ENSCLAG00000017753)	NDOR1 (ENSCLAG00000006332)	RNF208 (ENSCLAG00000017701)	CYSRT1 (ENSCLAG00000007413)	RNF224 (ENSCLAG00000007639)	SLC34A3 (ENSCLAG00000005009)	TUBB4B (ENSCLAG00000007043)
Naked mole-rat female	MODERN SPECIES	3	ENSHGLG00000040961	MAMDC4 (ENSHGLG00000014599)	EDF1 (ENSHGLG00000014528)	TRAF2 (ENSHGLG00000014367)	FBXW5 (ENSHGLG00000018459)	C8G (ENSHGLG00000012991)	ENSHGLG00000012411	ENSHGLG00000048876	ENSHGLG00000048674	CLIC3 (ENSHGLG00000019357)	ABCA2 (ENSHGLG00000010424)	FUT7 (ENSHGLG00000019096)	NPDC1 (ENSHGLG00000016494)	ENTPD2 (ENSHGLG00000013712)	SAPCD2 (ENSHGLG00000013081)	UAP1L1 (ENSHGLG00000014350) ##22	DPP7 (ENSHGLG00000012051)	GRIN1 (ENSHGLG00000009960)	ANAPC2 (ENSHGLG00000012889)	SSNA1 (ENSHGLG00000012331)	TPRN (ENSHGLG00000011593)	ENSHGLG00000020656
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Marmotini	ANCESTRAL SPECIES	1	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00730000114714	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b
Marmotini_b	ANCESTRAL SPECIES	2	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Arctic ground squirrel	MODERN SPECIES	156	PHPT1 (ENSUPAG00010006497)	MAMDC4 (ENSUPAG00010006442)	EDF1 (ENSUPAG00010006437)	TRAF2 (ENSUPAG00010006407)	FBXW5 (ENSUPAG00010006399)	C8G (ENSUPAG00010006391)	LCN12 (ENSUPAG00010006378)	PTGDS (ENSUPAG00010006372)	ENSUPAG00010006364	CLIC3 (ENSUPAG00010006357)	ENSUPAG00010006296	FUT7 (ENSUPAG00010006288)	NPDC1 (ENSUPAG00010006257)	ENTPD2 (ENSUPAG00010006251)	SAPCD2 (ENSUPAG00010006246)	UAP1L1 (ENSUPAG00010006239) ##22	DPP7 (ENSUPAG00010006226)	MAN1B1 (ENSUPAG00010006185)	ENSUPAG00010006176	ENSUPAG00010006171	LRRC26 (ENSUPAG00010006170)	TMEM210 (ENSUPAG00010006162)	ANAPC2 (ENSUPAG00010006139)	SSNA1 (ENSUPAG00010006131)	TPRN (ENSUPAG00010006122)	TMEM203 (ENSUPAG00010006119)	NDOR1 (ENSUPAG00010006072)	RNF208 (ENSUPAG00010006067)	CYSRT1 (ENSUPAG00010006061)	RNF224 (ENSUPAG00010006059)	SLC34A3 (ENSUPAG00010006039)
Squirrel	MODERN SPECIES	269	MAMDC4 (ENSSTOG00000015455)	EDF1 (ENSSTOG00000025154)	TRAF2 (ENSSTOG00000012096)	FBXW5 (ENSSTOG00000021979)	C8G (ENSSTOG00000014108)	LCN12 (ENSSTOG00000024098)	PTGDS (ENSSTOG00000019805)	ENSSTOG00000019684	PAXX (ENSSTOG00000025601)	CLIC3 (ENSSTOG00000023657)	ABCA2 (ENSSTOG00000013825)	FUT7 (ENSSTOG00000013862)	NPDC1 (ENSSTOG00000019775)	ENTPD2 (ENSSTOG00000010778)	SAPCD2 (ENSSTOG00000010785)	UAP1L1 (ENSSTOG00000010790) ##22	DPP7 (ENSSTOG00000008730)	MAN1B1 (ENSSTOG00000021513)	GRIN1 (ENSSTOG00000026607)	LRRC26 (ENSSTOG00000027229)	TMEM210 (ENSSTOG00000003550)	ANAPC2 (ENSSTOG00000004113)	SSNA1 (ENSSTOG00000004137)	TPRN (ENSSTOG00000027939)	TMEM203 (ENSSTOG00000020912)	NDOR1 (ENSSTOG00000004178)	CYSRT1 (ENSSTOG00000033064)	SLC34A3 (ENSSTOG00000014451)	TUBB4B (ENSSTOG00000021231)	FAM166A (ENSSTOG00000014459)	STPG3 (ENSSTOG00000014467)
Alpin marmot	MODERN SPECIES	106	RABL6 (ENSMMMG00000009622)	PHPT1 (ENSMMMG00000009614)	EDF1 (ENSMMMG00000009463)	TRAF2 (ENSMMMG00000009429)	FBXW5 (ENSMMMG00000009406)	C8G (ENSMMMG00000009391)	LCN12 (ENSMMMG00000009372)	PTGDS (ENSMMMG00000009339)	PAXX (ENSMMMG00000009327)	CLIC3 (ENSMMMG00000009308)	ENSMMMG00000009264	FUT7 (ENSMMMG00000009252)	NPDC1 (ENSMMMG00000008941)	ENTPD2 (ENSMMMG00000008921)	SAPCD2 (ENSMMMG00000008899)	UAP1L1 (ENSMMMG00000008871) ##22	DPP7 (ENSMMMG00000008858)	MAN1B1 (ENSMMMG00000008828)	ENSMMMG00000008815	ENSMMMG00000008804	LRRC26 (ENSMMMG00000008800)	TMEM210 (ENSMMMG00000008792)	ANAPC2 (ENSMMMG00000008771)	SSNA1 (ENSMMMG00000008759)	ENSMMMG00000008756	TMEM203 (ENSMMMG00000008754)	NDOR1 (ENSMMMG00000008644)	ENSMMMG00000008639	RNF208 (ENSMMMG00000008635)	CYSRT1 (ENSMMMG00000008629)	RNF224 (ENSMMMG00000008626)
Eurasian red squirrel	MODERN SPECIES	6	AJM1 (ENSSVLG00005016763)	PHPT1 (ENSSVLG00005016779)	ENSSVLG00005017849	TRAF2 (ENSSVLG00005017919)	FBXW5 (ENSSVLG00005017960)	C8G (ENSSVLG00005017987)	LCN12 (ENSSVLG00005018084)	PTGDS (ENSSVLG00005018156)	PAXX (ENSSVLG00005018285)	CLIC3 (ENSSVLG00005018309)	ENSSVLG00005018392	FUT7 (ENSSVLG00005018791)	NPDC1 (ENSSVLG00005018818)	ENTPD2 (ENSSVLG00005018860)	SAPCD2 (ENSSVLG00005018916)	UAP1L1 (ENSSVLG00005019001) ##22	DPP7 (ENSSVLG00005019137)	MAN1B1 (ENSSVLG00005019401)	ENSSVLG00005019495	ENSSVLG00005019547	LRRC26 (ENSSVLG00005019594)	TMEM210 (ENSSVLG00005019652)	ANAPC2 (ENSSVLG00005019762)	SSNA1 (ENSSVLG00005019908)	TPRN (ENSSVLG00005019950)	TMEM203 (ENSSVLG00005019990)	NDOR1 (ENSSVLG00005020031)	ENSSVLG00005020114	RNF208 (ENSSVLG00005020130)	CYSRT1 (ENSSVLG00005020147)	RNF224 (ENSSVLG00005020170)
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Muroidea	ANCESTRAL SPECIES	1	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Murinae	ANCESTRAL SPECIES	1	ENSGT00390000002738.a	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Mus	ANCESTRAL SPECIES	1	ENSGT00390000002738.a	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Mus_A	ANCESTRAL SPECIES		ENSGT00390000002738.a	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000002738.a	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Mouse	MODERN SPECIES	11	Phpt1 (ENSMUSG00000036504)	Mamdc4 (ENSMUSG00000026941)	Edf1 (ENSMUSG00000015092)	Traf2 (ENSMUSG00000026942)	Fbxw5 (ENSMUSG00000015095)	C8g (ENSMUSG00000015083)	Lcn12 (ENSMUSG00000026943)	Ptgds (ENSMUSG00000015090)	Clic3 (ENSMUSG00000015093)	Paxx (ENSMUSG00000047617)	Abca2 (ENSMUSG00000026944)	Fut7 (ENSMUSG00000036587)	Npdc1 (ENSMUSG00000015094)	Entpd2 (ENSMUSG00000015085)	Sapcd2 (ENSMUSG00000026955)	Uap1l1 (ENSMUSG00000026956) ##22	Dpp7 (ENSMUSG00000026958)	Man1b1 (ENSMUSG00000036646)	Grin1 (ENSMUSG00000026959)	Lrrc26 (ENSMUSG00000026961)	Tmem210 (ENSMUSG00000026963)	Anapc2 (ENSMUSG00000026965)	Ssna1 (ENSMUSG00000026966)	Tprn (ENSMUSG00000048707)	Tmem203 (ENSMUSG00000078201)	Ndor1 (ENSMUSG00000115074)	Ndor1 (ENSMUSG00000006471)	Ndor1 (ENSMUSG00000115018)	Rnf208 (ENSMUSG00000044628)	Cysrt1 (ENSMUSG00000036731)	Rnf224 (ENSMUSG00000089953)
Mus_C	ANCESTRAL SPECIES		ENSGT00390000002738.a	ENSGT00940000162046	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Steppe mouse	MODERN SPECIES	2889	Ajm1 (ENSMSIG00000022471)	Phpt1 (ENSMSIG00000022477)	Edf1 (ENSMSIG00000022614)	Traf2 (ENSMSIG00000022633)	Fbxw5 (ENSMSIG00000022664)	C8g (ENSMSIG00000022687)	Lcn12 (ENSMSIG00000022732)	Ptgds (ENSMSIG00000022773)	Paxx (ENSMSIG00000022794)	Clic3 (ENSMSIG00000022819)	Abca2 (ENSMSIG00000022845)	Fut7 (ENSMSIG00000022998)	Npdc1 (ENSMSIG00000023008)	Entpd2 (ENSMSIG00000023052)	Sapcd2 (ENSMSIG00000023070)	Uap1l1 (ENSMSIG00000023104) ##22	Dpp7 (ENSMSIG00000023133)	Man1b1 (ENSMSIG00000023173)	Grin1 (ENSMSIG00000023294)	Lrrc26 (ENSMSIG00000023364)	Tmem210 (ENSMSIG00000023378)	Anapc2 (ENSMSIG00000023390)	Ssna1 (ENSMSIG00000023430)	Tprn (ENSMSIG00000023447)	Tmem203 (ENSMSIG00000023470)	Ndor1 (ENSMSIG00000023474)	Rnf208 (ENSMSIG00000023530)	Cysrt1 (ENSMSIG00000023536)	Rnf224 (ENSMSIG00000023541)	Slc34a3 (ENSMSIG00000023551)	Tubb4b (ENSMSIG00000023582)
spretus	MODERN SPECIES	11	Phpt1 (MGP_SPRETEiJ_G0024201)	Mamdc4 (MGP_SPRETEiJ_G0024200)	Edf1 (MGP_SPRETEiJ_G0024199)	Traf2 (MGP_SPRETEiJ_G0024198)	Fbxw5 (MGP_SPRETEiJ_G0024197)	C8g (MGP_SPRETEiJ_G0024196)	Lcn12 (MGP_SPRETEiJ_G0024195)	Ptgds (MGP_SPRETEiJ_G0024194)	Clic3 (MGP_SPRETEiJ_G0024193)	Paxx (MGP_SPRETEiJ_G0024192)	Abca2 (MGP_SPRETEiJ_G0024191)	Fut7 (MGP_SPRETEiJ_G0024190)	Npdc1 (MGP_SPRETEiJ_G0024189)	Entpd2 (MGP_SPRETEiJ_G0024188)	Sapcd2 (MGP_SPRETEiJ_G0024187)	Uap1l1 (MGP_SPRETEiJ_G0024186) ##22	Dpp7 (MGP_SPRETEiJ_G0024185)	Man1b1 (MGP_SPRETEiJ_G0024184)	Lrrc26 (MGP_SPRETEiJ_G0024183)	Tmem210 (MGP_SPRETEiJ_G0024182)	Grin1 (MGP_SPRETEiJ_G0024181)	Anapc2 (MGP_SPRETEiJ_G0024180)	Ssna1 (MGP_SPRETEiJ_G0024179)	Tprn (MGP_SPRETEiJ_G0024178)	Tmem203 (MGP_SPRETEiJ_G0024177)	Ndor1 (MGP_SPRETEiJ_G0024176)	Rnf208 (MGP_SPRETEiJ_G0024175)	Cysrt1 (MGP_SPRETEiJ_G0024174)	Rnf224 (MGP_SPRETEiJ_G0024173)	Slc34a3 (MGP_SPRETEiJ_G0024172)	MGP_SPRETEiJ_G0024171
Ryukyu mouse	MODERN SPECIES	11	Phpt1 (MGP_CAROLIEiJ_G0023284)	Mamdc4 (MGP_CAROLIEiJ_G0023283)	Edf1 (MGP_CAROLIEiJ_G0023282)	Traf2 (MGP_CAROLIEiJ_G0023281)	Fbxw5 (MGP_CAROLIEiJ_G0023280)	C8g (MGP_CAROLIEiJ_G0023279)	Lcn12 (MGP_CAROLIEiJ_G0023278)	Ptgds (MGP_CAROLIEiJ_G0023277)	Clic3 (MGP_CAROLIEiJ_G0023276)	Paxx (MGP_CAROLIEiJ_G0023275)	Abca2 (MGP_CAROLIEiJ_G0023274)	Fut7 (MGP_CAROLIEiJ_G0023273)	Npdc1 (MGP_CAROLIEiJ_G0023272)	Entpd2 (MGP_CAROLIEiJ_G0023271)	MGP_CAROLIEiJ_G0023270	Uap1l1 (MGP_CAROLIEiJ_G0023269) ##22	Dpp7 (MGP_CAROLIEiJ_G0023268)	Man1b1 (MGP_CAROLIEiJ_G0023267)	Grin1 (MGP_CAROLIEiJ_G0023266)	Lrrc26 (MGP_CAROLIEiJ_G0023265)	Tmem210 (MGP_CAROLIEiJ_G0023264)	Anapc2 (MGP_CAROLIEiJ_G0023263)	Ssna1 (MGP_CAROLIEiJ_G0023262)	Tprn (MGP_CAROLIEiJ_G0023261)	Tmem203 (MGP_CAROLIEiJ_G0023260)	Ndor1 (MGP_CAROLIEiJ_G0023259)	Rnf208 (MGP_CAROLIEiJ_G0023258)	Cysrt1 (MGP_CAROLIEiJ_G0023257)	Rnf224 (MGP_CAROLIEiJ_G0023256)	Slc34a3 (MGP_CAROLIEiJ_G0023255)	Tubb4b (MGP_CAROLIEiJ_G0023254)
Shrew mouse	MODERN SPECIES	16	Ajm1 (MGP_PahariEiJ_G0024743)	Phpt1 (MGP_PahariEiJ_G0024742)	Mamdc4 (MGP_PahariEiJ_G0024741)	Traf2 (MGP_PahariEiJ_G0024739)	Fbxw5 (MGP_PahariEiJ_G0024738)	C8g (MGP_PahariEiJ_G0024737)	Lcn12 (MGP_PahariEiJ_G0024736)	Ptgds (MGP_PahariEiJ_G0024735)	Clic3 (MGP_PahariEiJ_G0024734)	Paxx (MGP_PahariEiJ_G0024733)	Abca2 (MGP_PahariEiJ_G0024732)	Fut7 (MGP_PahariEiJ_G0024731)	Npdc1 (MGP_PahariEiJ_G0024730)	Entpd2 (MGP_PahariEiJ_G0024729)	Sapcd2 (MGP_PahariEiJ_G0024728)	Uap1l1 (MGP_PahariEiJ_G0024727) ##22	Dpp7 (MGP_PahariEiJ_G0024726)	Man1b1 (MGP_PahariEiJ_G0024725)	Grin1 (MGP_PahariEiJ_G0024724)	Lrrc26 (MGP_PahariEiJ_G0024723)	Tmem210 (MGP_PahariEiJ_G0024722)	Anapc2 (MGP_PahariEiJ_G0024721)	Ssna1 (MGP_PahariEiJ_G0024720)	Tprn (MGP_PahariEiJ_G0024719)	Tmem203 (MGP_PahariEiJ_G0024718)	Ndor1 (MGP_PahariEiJ_G0024717)	Rnf208 (MGP_PahariEiJ_G0024716)	Cysrt1 (MGP_PahariEiJ_G0024715)	Rnf224 (MGP_PahariEiJ_G0024714)	Slc34a3 (MGP_PahariEiJ_G0024713)	Tubb4b (MGP_PahariEiJ_G0024712)
Rat	MODERN SPECIES	13	Tmem141 (ENSRNOG00000028254)	Ccdc183 (ENSRNOG00000017044)	Rabl6 (ENSRNOG00000016795)	Ajm1 (ENSRNOG00000033863)	Edf1 (ENSRNOG00000016272)	Traf2 (ENSRNOG00000006238)	Fbxw5 (ENSRNOG00000028674)	C8g (ENSRNOG00000028701)	Ptgds (ENSRNOG00000015550)	Paxx (ENSRNOG00000015294)	Clic3 (ENSRNOG00000015184)	Abca2 (ENSRNOG00000014268)	Fut7 (ENSRNOG00000014156)	Npdc1 (ENSRNOG00000013102)	Sapcd2 (ENSRNOG00000013069)	Uap1l1 (ENSRNOG00000012960) ##22	Dpp7 (ENSRNOG00000012640)	Man1b1 (ENSRNOG00000012559)	Grin1 (ENSRNOG00000011726)	Lrrc26 (ENSRNOG00000011457)	Tmem210 (ENSRNOG00000040275)	Anapc2 (ENSRNOG00000011295)	Ssna1 (ENSRNOG00000011093)	Tprn (ENSRNOG00000010896)	Tmem203 (ENSRNOG00000010894)	Ndor1 (ENSRNOG00000010616)	Cysrt1 (ENSRNOG00000010600)	Rnf224 (ENSRNOG00000040284)	Slc34a3 (ENSRNOG00000010451)	Rnf208 (ENSRNOG00000010607)	Tubb4b (ENSRNOG00000010170)
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00940000162046	ENSGT00390000008519.lb	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00390000002738.a	ENSGT00940000162046	ENSGT00390000008519.lb	ENSGT00940000156621	ENSGT00730000111276	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Golden Hamster	MODERN SPECIES	771	Phpt1 (ENSMAUG00000016521)	Mamdc4 (ENSMAUG00000018382)	ENSMAUG00000013857	Traf2 (ENSMAUG00000000898)	Fbxw5 (ENSMAUG00000016532)	C8g (ENSMAUG00000017627)	Lcn12 (ENSMAUG00000003344)	Ptgds (ENSMAUG00000003427)	Paxx (ENSMAUG00000003458)	Clic3 (ENSMAUG00000013703)	Abca2 (ENSMAUG00000000733)	Fut7 (ENSMAUG00000020724)	Npdc1 (ENSMAUG00000001234)	Entpd2 (ENSMAUG00000013094)	Sapcd2 (ENSMAUG00000019171)	Uap1l1 (ENSMAUG00000015530) ##22	Dpp7 (ENSMAUG00000010547)	Man1b1 (ENSMAUG00000014662)	Grin1 (ENSMAUG00000019825)	Lrrc26 (ENSMAUG00000015545)	Tmem210 (ENSMAUG00000014833)	Anapc2 (ENSMAUG00000011413)	Ssna1 (ENSMAUG00000015044)	Tprn (ENSMAUG00000002634)	Tmem203 (ENSMAUG00000009023)	Cysrt1 (ENSMAUG00000018797)	Rnf224 (ENSMAUG00000008755)	Slc34a3 (ENSMAUG00000001635)	Tubb4b (ENSMAUG00000004730)	Fam166a (ENSMAUG00000010869)	Stpg3 (ENSMAUG00000019445)
Chinese hamster chok1gshd	MODERN SPECIES	188	Phpt1 (ENSCGRG00001009448)	Mamdc4 (ENSCGRG00001011748)	Edf1 (ENSCGRG00001010405)	Traf2 (ENSCGRG00001016324)	Fbxw5 (ENSCGRG00001006453)	C8g (ENSCGRG00001002546)	Lcn12 (ENSCGRG00001009091)	Ptgds (ENSCGRG00001005190)	Paxx (ENSCGRG00001004092)	Clic3 (ENSCGRG00001016510)	Abca2 (ENSCGRG00001008128)	Fut7 (ENSCGRG00001005263)	Npdc1 (ENSCGRG00001017154)	Entpd2 (ENSCGRG00001016211)	Sapcd2 (ENSCGRG00001017804)	Uap1l1 (ENSCGRG00001011921) ##22	Dpp7 (ENSCGRG00001009351)	Man1b1 (ENSCGRG00001012772)	Grin1 (ENSCGRG00001010223)	Lrrc26 (ENSCGRG00001013084)	Tmem210 (ENSCGRG00001012766)	Anapc2 (ENSCGRG00001019671)	Ssna1 (ENSCGRG00001012373)	Tprn (ENSCGRG00001012035)	Tmem203 (ENSCGRG00001007727)	NDOR1 (ENSCGRG00001008788)	Rnf208 (ENSCGRG00001007346)	Cysrt1 (ENSCGRG00001006292)	Rnf224 (ENSCGRG00001008988)	Slc34a3 (ENSCGRG00001014537)	Tubb4b (ENSCGRG00001012850)
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00940000162046	ENSGT00390000008519.lb	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.b	ENSGT01100000263580	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000159838	ENSGT00940000155422	ENSGT00940000158016.d	ENSGT00940000162780	ENSGT00390000008939	ENSGT00390000016127	ENSGT00390000012318	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00930000151050	ENSGT00680000100126	ENSGT00390000003233	ENSGT00510000050587	ENSGT00950000183177.a.a.a.b	ENSGT00940000154394.b.a.b
Northern American deer mouse	MODERN SPECIES	17	Edf1 (ENSPEMG00000018336)	Traf2 (ENSPEMG00000011629)	Fbxw5 (ENSPEMG00000011944)	ENSPEMG00000028250	C8g (ENSPEMG00000005092)	Lcn12 (ENSPEMG00000013508)	Ptgds (ENSPEMG00000008581)	Paxx (ENSPEMG00000018798)	Clic3 (ENSPEMG00000010344)	ENSPEMG00000026866	ENSPEMG00000018604	Fut7 (ENSPEMG00000014626)	Npdc1 (ENSPEMG00000018080)	Entpd2 (ENSPEMG00000016585)	Sapcd2 (ENSPEMG00000010207)	Uap1l1 (ENSPEMG00000002939) ##22	Dpp7 (ENSPEMG00000014332)	Man1b1 (ENSPEMG00000008520)	Grin1 (ENSPEMG00000012505)	Lrrc26 (ENSPEMG00000028885)	Tmem210 (ENSPEMG00000009158)	Anapc2 (ENSPEMG00000011204)	Ssna1 (ENSPEMG00000025496)	Tprn (ENSPEMG00000018046)	Tmem203 (ENSPEMG00000006262)	Ndor1 (ENSPEMG00000009089)	Rnf208 (ENSPEMG00000031408)	Cysrt1 (ENSPEMG00000030113)	Rnf224 (ENSPEMG00000005243)	Slc34a3 (ENSPEMG00000016827)	Tubb4b (ENSPEMG00000030881)
Prairie vole	MODERN SPECIES	12	Mamdc4 (ENSMOCG00000013367)	Edf1 (ENSMOCG00000007658)	ENSMOCG00000013973	Traf2 (ENSMOCG00000019498)	Fbxw5 (ENSMOCG00000017562)	C8g (ENSMOCG00000021565)	Lcn12 (ENSMOCG00000003650)	Ptgds (ENSMOCG00000010316)	Paxx (ENSMOCG00000013243)	Clic3 (ENSMOCG00000015074)	Abca2 (ENSMOCG00000021438)	Fut7 (ENSMOCG00000017536)	Npdc1 (ENSMOCG00000008064)	Entpd2 (ENSMOCG00000010488)	Sapcd2 (ENSMOCG00000016720)	Uap1l1 (ENSMOCG00000020526) ##22	Dpp7 (ENSMOCG00000022857)	Man1b1 (ENSMOCG00000022250)	Grin1 (ENSMOCG00000001739)	Lrrc26 (ENSMOCG00000000776)	Tmem210 (ENSMOCG00000022497)	Anapc2 (ENSMOCG00000018370)	Ssna1 (ENSMOCG00000000672)	Tprn (ENSMOCG00000002526)	Tmem203 (ENSMOCG00000002237)	Ndor1 (ENSMOCG00000014853)	Rnf208 (ENSMOCG00000017277)	Cysrt1 (ENSMOCG00000018383)	Rnf224 (ENSMOCG00000001015)	Slc34a3 (ENSMOCG00000020019)	Tubb4b (ENSMOCG00000001389)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1179	Phpt1 (ENSNGAG00000007744)	Mamdc4 (ENSNGAG00000018162)	Edf1 (ENSNGAG00000017082)	Traf2 (ENSNGAG00000020956)	Fbxw5 (ENSNGAG00000018210)	C8g (ENSNGAG00000002560)	Lcn12 (ENSNGAG00000018066)	Ptgds (ENSNGAG00000017471)	Paxx (ENSNGAG00000016660)	Clic3 (ENSNGAG00000012949)	Abca2 (ENSNGAG00000019981)	Fut7 (ENSNGAG00000020762)	Npdc1 (ENSNGAG00000008893)	Entpd2 (ENSNGAG00000002496)	Sapcd2 (ENSNGAG00000019600)	Uap1l1 (ENSNGAG00000020472) ##22	Dpp7 (ENSNGAG00000020456)
Lesser Egyptian jerboa	MODERN SPECIES	53	Phpt1 (ENSJJAG00000021278)	Mamdc4 (ENSJJAG00000010818)	ENSJJAG00000022999	Traf2 (ENSJJAG00000021847)	Fbxw5 (ENSJJAG00000021184)	C8g (ENSJJAG00000020577)	Lcn12 (ENSJJAG00000000327)	Ptgds (ENSJJAG00000017263)	Paxx (ENSJJAG00000006997)	Clic3 (ENSJJAG00000022037)	Abca2 (ENSJJAG00000016080)	Fut7 (ENSJJAG00000019986)	Npdc1 (ENSJJAG00000008582)	Entpd2 (ENSJJAG00000019539)	Sapcd2 (ENSJJAG00000021677)	Uap1l1 (ENSJJAG00000011506) ##22	Dpp7 (ENSJJAG00000023901)	Man1b1 (ENSJJAG00000009593)	Grin1 (ENSJJAG00000021930)	Lrrc26 (ENSJJAG00000022399)	Tmem210 (ENSJJAG00000022174)	Anapc2 (ENSJJAG00000020552)	Ssna1 (ENSJJAG00000015805)	Tprn (ENSJJAG00000018406)	Ndor1 (ENSJJAG00000023469)	Rnf208 (ENSJJAG00000003202)	Cysrt1 (ENSJJAG00000000597)	Rnf224 (ENSJJAG00000012529)	Slc34a3 (ENSJJAG00000009730)	Tubb4b (ENSJJAG00000021854)	Fam166a (ENSJJAG00000015910)
Kangaroo rat	MODERN SPECIES	437	Rabl6 (ENSDORG00000012727)	Phpt1 (ENSDORG00000005100)	Mamdc4 (ENSDORG00000005098)	ENSDORG00000005097	Traf2 (ENSDORG00000004160)	Fbxw5 (ENSDORG00000004161)	C8g (ENSDORG00000026220)	ENSDORG00000028372	Paxx (ENSDORG00000010003)	Clic3 (ENSDORG00000010004)	Abca2 (ENSDORG00000010005)	Fut7 (ENSDORG00000027166)	Npdc1 (ENSDORG00000025278)	Entpd2 (ENSDORG00000003428)	ENSDORG00000004965	Uap1l1 (ENSDORG00000001214) ##22	Dpp7 (ENSDORG00000001210)	Man1b1 (ENSDORG00000024703)	Grin1 (ENSDORG00000025069)	Tmem210 (ENSDORG00000009420)	Anapc2 (ENSDORG00000009421)	Ssna1 (ENSDORG00000024926)	Tmem203 (ENSDORG00000009424)	Ndor1 (ENSDORG00000009425)	ENSDORG00000024457	Cysrt1 (ENSDORG00000029637)	Rnf224 (ENSDORG00000024963)	Slc34a3 (ENSDORG00000009429)	Tubb4b (ENSDORG00000029897)	Fam166a (ENSDORG00000009433)	Stpg3 (ENSDORG00000009435)
Lagomorpha	ANCESTRAL SPECIES	758																ENSGT00940000153464.A.a ##22	ENSGT00940000159838
Pika	MODERN SPECIES	4392																ENSOPRG00000015771 ##22	DPP7 (ENSOPRG00000015792)
Marsupialia	ANCESTRAL SPECIES	18	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721
Marsupialia_b	ANCESTRAL SPECIES	5	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.c	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721
Diprotodontia	ANCESTRAL SPECIES	4	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.c	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721
Diprotodontia_a	ANCESTRAL SPECIES	5	ENSGT00390000008519	ENSGT00940000156621	ENSGT00730000111276	ENSGT00990000203858	ENSGT00440000034309	ENSGT01050000244868.b.c	ENSGT01100000263580	ENSGT01050000244868.a.a.b.a.a	ENSGT00390000000543	ENSGT00940000161243	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604	ENSGT01100000263542.B.b	ENSGT00390000008072	ENSGT00940000153464.A.a ##22	ENSGT00940000155422	ENSGT00940000166451	ENSGT00940000159838	ENSGT00940000164721
Common wonbat	MODERN SPECIES	35	MAMDC4 (ENSVURG00010005821)	EDF1 (ENSVURG00010005862)	TRAF2 (ENSVURG00010005894)	FBXW5 (ENSVURG00010005915)	C8G (ENSVURG00010005926)	ENSVURG00010005937	PTGDS (ENSVURG00010005951)	ENSVURG00010005961	ENSVURG00010005979	CLIC3 (ENSVURG00010006001)	ENSVURG00010006222	FUT7 (ENSVURG00010006238)	ENSVURG00010006241	ENTPD2 (ENSVURG00010006248)	SAPCD2 (ENSVURG00010006257)	UAP1L1 (ENSVURG00010006263) ##22	MAN1B1 (ENSVURG00010006266)	DPP7 (ENSVURG00010006289)	ENSVURG00010006308	ENTPD8 (ENSVURG00010006336)	ENSVURG00010006348	ENSVURG00010006375	NRARP (ENSVURG00010006411)	TOR4A (ENSVURG00010006421)	NELFB (ENSVURG00010006429)	ENSVURG00010006438	FAM166A (ENSVURG00010006445)	TUBB4B (ENSVURG00010006457)	SLC34A3 (ENSVURG00010006487)	RNF224 (ENSVURG00010006514)	CYSRT1 (ENSVURG00010006520)
koala	MODERN SPECIES	11	MAMDC4 (ENSPCIG00000023743)	EDF1 (ENSPCIG00000023737)	TRAF2 (ENSPCIG00000023754)	FBXW5 (ENSPCIG00000023766)	ENSPCIG00000036756	C8G (ENSPCIG00000023769)	ENSPCIG00000023774	ENSPCIG00000000066	PAXX (ENSPCIG00000000225)	CLIC3 (ENSPCIG00000000338)	ABCA2 (ENSPCIG00000000925)	ENSPCIG00000006169	ENSPCIG00000000166	ENTPD2 (ENSPCIG00000006170)	SAPCD2 (ENSPCIG00000036025)	UAP1L1 (ENSPCIG00000006172) ##22	MAN1B1 (ENSPCIG00000006173)	ENSPCIG00000035165	DPP7 (ENSPCIG00000006174)	ENSPCIG00000008555	ENTPD8 (ENSPCIG00000006178)	ENSPCIG00000006179	ENSPCIG00000006180	NRARP (ENSPCIG00000031393)	TOR4A (ENSPCIG00000006184)	NELFB (ENSPCIG00000006188)	ENSPCIG00000006190	FAM166A (ENSPCIG00000006192)	TUBB4B (ENSPCIG00000006193)	RNF224 (ENSPCIG00000006195)	ENSPCIG00000006196
Wallaby	MODERN SPECIES	12149																ENSMEUG00000007068 ##22
Tasmanian devil	MODERN SPECIES	1	TRAF2 (ENSSHAG00000028753)	FBXW5 (ENSSHAG00000007964)	ENSSHAG00000008097	ENSSHAG00000029489	ENSSHAG00000008440	ENSSHAG00000008790	ENSSHAG00000008635	ENSSHAG00000030699	CLIC3 (ENSSHAG00000008953)	ABCA2 (ENSSHAG00000008998)	FUT7 (ENSSHAG00000030571)	ENSSHAG00000009840	ENSSHAG00000026515	ENTPD2 (ENSSHAG00000010029)	SAPCD2 (ENSSHAG00000027493)	UAP1L1 (ENSSHAG00000010429) ##22	MAN1B1 (ENSSHAG00000010698)	ENSSHAG00000010922	ENSSHAG00000011135	ENSSHAG00000011745	ENSSHAG00000011919	ENSSHAG00000001276	NRARP (ENSSHAG00000007125)	TOR4A (ENSSHAG00000031816)	NELFB (ENSSHAG00000007641)	STPG3 (ENSSHAG00000020947)	FAM166A (ENSSHAG00000008094)	TUBB4B (ENSSHAG00000027647)	SLC34A3 (ENSSHAG00000008341)	RNF224 (ENSSHAG00000008546)	RNF208 (ENSSHAG00000029357)
Opossum	MODERN SPECIES		MAMDC4 (ENSMODG00000017335)	EDF1 (ENSMODG00000017329)	TRAF2 (ENSMODG00000017325)	FBXW5 (ENSMODG00000017319)	C8G (ENSMODG00000017317)	ENSMODG00000017313	ENSMODG00000038827	ENSMODG00000028812	ENSMODG00000017300	CLIC3 (ENSMODG00000017298)	ABCA2 (ENSMODG00000017289)	FUT7 (ENSMODG00000017272)	ENSMODG00000017269	ENTPD2 (ENSMODG00000017256)	SAPCD2 (ENSMODG00000039583)	UAP1L1 (ENSMODG00000038921) ##22	MAN1B1 (ENSMODG00000017244)	DPP7 (ENSMODG00000017239)	ENSMODG00000017235	ENTPD8 (ENSMODG00000017231)	ENSMODG00000017225	ENSMODG00000029650	ENSMODG00000028091	NRARP (ENSMODG00000023284)	TOR4A (ENSMODG00000017221)	NELFB (ENSMODG00000017220)	ENSMODG00000017218	FAM166A (ENSMODG00000017217)	ENSMODG00000017213	SLC34A3 (ENSMODG00000017206)	RNF224 (ENSMODG00000023283)
Platypus	MODERN SPECIES	87	MAMDC4 (ENSOANG00000010204)	PHPT1 (ENSOANG00000049298)	ENSOANG00000045023	ENSOANG00000041480	ENSOANG00000036222	ENSOANG00000036983	ENSOANG00000039329	ENSOANG00000045787	ENSOANG00000003710	ABCA2 (ENSOANG00000042447)	ENSOANG00000038402	FUT7 (ENSOANG00000010141)	ENSOANG00000045539	ENTPD2 (ENSOANG00000008774)	ENSOANG00000030715	UAP1L1 (ENSOANG00000036980) ##22	MAN1B1 (ENSOANG00000014254)	ENSOANG00000044155	ENSOANG00000045805	ENSOANG00000004060	ENSOANG00000039427	TUBB4B (ENSOANG00000049857)	ENSOANG00000050669	RNF208 (ENSOANG00000049153)	NDOR1 (ENSOANG00000042015)	ENSOANG00000043569	TMEM203 (ENSOANG00000036424)	ANAPC2 (ENSOANG00000043132)	ENSOANG00000049140	GRIN1 (ENSOANG00000013344)	NRARP (ENSOANG00000036574)
Coelacanth	MODERN SPECIES	227	ENSLACG00000018528	SYS1 (ENSLACG00000018501)	ACSS2 (ENSLACG00000018459)	SOGA1 (ENSLACG00000018371)	samhd1 (ENSLACG00000018309)	GSS (ENSLACG00000018278)	ENSLACG00000018133	TRPC4AP (ENSLACG00000018091)	EDEM2 (ENSLACG00000018064)	NDRG3 (ENSLACG00000017979)	SLA2 (ENSLACG00000017924)	PHF20 (ENSLACG00000017789)	ENSLACG00000017763	ENSLACG00000017595	ZNF335 (ENSLACG00000017487)	UAP1L1 (ENSLACG00000017391) ##22	MAN1B1 (ENSLACG00000017270)	ENSLACG00000017137	ENSLACG00000017065	zgc:113162 (ENSLACG00000016875)	ENSLACG00000016759	ENSLACG00000022269	NELFB (ENSLACG00000016663)	ENSLACG00000016545	ENSLACG00000016482	HELLS (ENSLACG00000016314)	CYP4F8 (ENSLACG00000016275)	entpd2a.1 (ENSLACG00000016053)	SAPCD2 (ENSLACG00000015864)	ENSLACG00000015683	ENSLACG00000015318
Elephant shark	MODERN SPECIES	1585	ENSCMIG00000014272	ENSCMIG00000014263	rpl28 (ENSCMIG00000014253)	pdcl (ENSCMIG00000014250)	ENSCMIG00000014247	ENSCMIG00000014246	ptgs1 (ENSCMIG00000014238)	ENSCMIG00000014236	mrrf (ENSCMIG00000014234)	rbm18 (ENSCMIG00000014232)	lhx6a (ENSCMIG00000014229)	morn5 (ENSCMIG00000014227)	ndufa8 (ENSCMIG00000014224)	ENSCMIG00000014221	edf1 (ENSCMIG00000014217)	uap1l1 (ENSCMIG00000014206) ##22	ENSCMIG00000014197	ENTPD2 (ENSCMIG00000014180)	ENSCMIG00000014173	PPIL3 (ENSCMIG00000014171)	zdhhc12a (ENSCMIG00000014170)	zer1 (ENSCMIG00000014168)	TBC1D13 (ENSCMIG00000014164)	lrrc8aa (ENSCMIG00000014161)	ENSCMIG00000014160	ENSCMIG00000014159	phyhd1 (ENSCMIG00000014157)	dolk (ENSCMIG00000014155)	NUP188 (ENSCMIG00000014081)	rapgef1b (ENSCMIG00000013944)	med27 (ENSCMIG00000013855)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153464.A.a ##22
Hagfish	MODERN SPECIES	54																uap1l1 (ENSEBUG00000002598) ##22	ENSEBUG00000007387	ENSEBUG00000003724	ENSEBUG00000011340	dctd (ENSEBUG00000007299)	ndor1 (ENSEBUG00000006362)	ENSEBUG00000009729	ENSEBUG00000004116	ENSEBUG00000014711	ENSEBUG00000008816	ENSEBUG00000013281	ENSEBUG00000012726	ENSEBUG00000010630	ENSEBUG00000013708	ENSEBUG00000016078	ENSEBUG00000015647
Lamprey	MODERN SPECIES	468																UAP1L1 (ENSPMAG00000009044) ##22
Ciona	ANCESTRAL SPECIES																	ENSGT00940000153464.A #22
Ciona intestinalis	MODERN SPECIES	13	ENSCING00000022126	ENSCING00000025143	ENSCING00000001309	ENSCING00000022846	ENSCING00000003482	ENSCING00000019829	ENSCING00000003502	n (ENSCING00000003521)	ENSCING00000023555	ENSCING00000012970	ENSCING00000012971	ENSCING00000018163	ENSCING00000009441	ENSCING00000009442	ENSCING00000009443	ENSCING00000009444 #22	ENSCING00000023522	ENSCING00000022239	ENSCING00000009445	ENSCING00000021488	ENSCING00000024370	ENSCING00000012967	ENSCING00000020364	ENSCING00000018932	ENSCING00000022178	ENSCING00000021075	ENSCING00000022068	ENSCING00000012968	ENSCING00000009439	ENSCING00000021370	ENSCING00000012969
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00940000153464.A #22
Fruitfly	MODERN SPECIES	16	COX5BL (FBgn0031831)	CG9596 (FBgn0031832)	COX5B (FBgn0031830)	IFT52 (FBgn0031829)	eya (FBgn0000320)	CG31637 (FBgn0051637)	CG9550 (FBgn0031826)	CG9547 (FBgn0031824)	CG31638 (FBgn0051638)	Phf5a (FBgn0031822)	epsilonCOP (FBgn0027496)	KFase (FBgn0287695)	Daxx (FBgn0031820)	Sec61alpha (FBgn0086357)	CG9536 (FBgn0031818)	mmy (FBgn0259749) #22	HemK1 (FBgn0031817)	Rchy1 (FBgn0031816)	frj (FBgn0031815)	retm (FBgn0031814)	Acox3 (FBgn0031813)	Fic (FBgn0263278)	Tig (FBgn0011722)	CG13982 (FBgn0031811)	CG42369 (FBgn0259715)	Nepl6 (FBgn0259716)	Nepl5 (FBgn0031808)	DIP-epsilon (FBgn0259714)	slam (FBgn0043854)	Nepl4 (FBgn0031805)	CG9500 (FBgn0031804)
Caenorhabditis elegans	MODERN SPECIES	2	F37A8.2 (WBGene00009502)	F37A8.1 (WBGene00009501)	ZK1058.9 (WBGene00014207)	nit-1 (WBGene00014206)	metl-6 (WBGene00014205)	ZK1058.3 (WBGene00014203)	ccdc-47 (WBGene00014204)	pat-3 (WBGene00003930)	mmcm-1 (WBGene00014202)	tir-1 (WBGene00006575)	rpl-3 (WBGene00004414)	acs-19 (WBGene00007969)	brc-1 (WBGene00000264)	cyp-25A4 (WBGene00007967)	maph-1.3 (WBGene00007966)	C36A4.4 (WBGene00007965) #22	C36A4.11 (WBGene00044167)	cyp-25A3 (WBGene00014697)	cyp-25A2 (WBGene00007964)	cyp-25A1 (WBGene00007963)	C36A4.10 (WBGene00007970)	cnnm-5 (WBGene00011260)	amx-1 (WBGene00000137)	dpy-27 (WBGene00001086)	toh-1 (WBGene00006591)	xbx-5 (WBGene00011974)	mtm-3 (WBGene00003476)	acy-3 (WBGene00000070)	lec-4 (WBGene00002267)	gmeb-3 (WBGene00008092)	C44F1.1 (WBGene00008091)
Yeast	MODERN SPECIES	3	ASM4 (YDL088C)	NUR1 (YDL089W)	RAM1 (YDL090C)	UBX3 (YDL091C)	SRP14 (YDL092W)	PMT5 (YDL093W)	YDL094C	PMT1 (YDL095W)	OPI6 (YDL096C)	RPN6 (YDL097C)	SNU23 (YDL098C)	BUG1 (YDL099W)	GET3 (YDL100C)	DUN1 (YDL101C)	POL3 (YDL102W)	QRI1 (YDL103C) #22	QRI7 (YDL104C)	NSE4 (YDL105W)	PHO2 (YDL106C)	MSS2 (YDL107W)	KIN28 (YDL108W)	YDL109C	TMA17 (YDL110C)	RRP42 (YDL111C)	TRM3 (YDL112W)	ATG20 (YDL113C)	YDL114W	YDL114W-A	IWR1 (YDL115C)	NUP84 (YDL116W)	CYK3 (YDL117W)