Boreoeutheria	ANCESTRAL SPECIES	21	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Euarchontoglires	ANCESTRAL SPECIES	21	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Primates	ANCESTRAL SPECIES	29	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049	ENSGT00940000157443 #37
Haplorrhini	ANCESTRAL SPECIES	43	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.b.b	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37	ENSGT00940000157332
Simiiformes	ANCESTRAL SPECIES	22	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37	ENSGT00940000157332
Catarrhini	ANCESTRAL SPECIES	21	ENSGT00910000148031 #10	ENSGT00940000155349 #11	ENSGT00910000147174	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000153889.e.b.a.d.a ##15	ENSGT00910000147093	ENSGT00910000146937 #16	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00440000038159.p.b #19	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160.x	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37
Hominoidea	ANCESTRAL SPECIES	21	ENSGT00910000148031 #10	ENSGT00940000155349 #11	ENSGT00910000147174	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000153889.e.b.a.d.a ##15	ENSGT00910000147093	ENSGT00910000146937 #16	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00440000038159.p.b #19	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160.x	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37	ENSGT00940000157332
Hominidae	ANCESTRAL SPECIES	23	ENSGT00390000004952.b #9	ENSGT00910000148031 #10	ENSGT00940000155349 #11	ENSGT00910000147174	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000153889.f #15	ENSGT00910000146937 #16	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00440000038159.p.b #19	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160.x	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37	ENSGT00940000157332
Orangutan	MODERN SPECIES	4	ENSPPYG00000031030 #7	KATNAL1 (ENSPPYG00000005253) #8	UBL3 (ENSPPYG00000037129) #9	ENSPPYG00000034870 #10	SLC7A1 (ENSPPYG00000005250) #11	MTUS2 (ENSPPYG00000005249) #12	SLC46A3 (ENSPPYG00000005248) #13	POMP (ENSPPYG00000005247) #14	ENSPPYG00000038952 #15	ENSPPYG00000034417 #16	FLT1 (ENSPPYG00000005246) #17	PAN3 (ENSPPYG00000005245) #18	ENSPPYG00000040072 #19	FLT3 (ENSPPYG00000005244) #20	URAD (ENSPPYG00000005243) #21	CDX2 (ENSPPYG00000005242) #22	ENSPPYG00000005241 #23	PDX1 (ENSPPYG00000005240) #24	GSX1 (ENSPPYG00000005239) #25	ENSPPYG00000005238 #26	LNX2 (ENSPPYG00000005237) #27	MTIF3 (ENSPPYG00000005236) #28	GTF3A (ENSPPYG00000005235) #29	RASL11A (ENSPPYG00000005234) #30	RPL21 (ENSPPYG00000005233) #31	USP12 (ENSPPYG00000005232) #32	GPR12 (ENSPPYG00000005231) #33	WASF3 (ENSPPYG00000005230) #34	CDK8 (ENSPPYG00000005229) #35	RNF6 (ENSPPYG00000005228) #36	SHISA2 (ENSPPYG00000030544) #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	23	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00910000148031 #10	ENSGT00940000155349 #11	ENSGT00910000147174	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000153889.f #15	ENSGT00910000146937 #16	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160.x	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37	ENSGT00940000157332
Homo/Pan group	ANCESTRAL SPECIES	22	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00910000148031 #10	ENSGT00940000155349 #11	ENSGT00910000147174	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000153889.f #15	ENSGT00910000146937 #16	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160.x	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37	ENSGT00940000157332
Pan	ANCESTRAL SPECIES	22	ENSGT00390000004952.b #9	ENSGT00910000148031 #10	ENSGT00940000155349 #11	ENSGT00910000147174	ENSGT00950000183026.B #12	ENSGT00930000151026.f	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000153889.f #15	ENSGT00910000146937 #16	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00390000015470.z.b ##23	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160.x	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37
Chimpanzee	MODERN SPECIES	4	UBL3 (ENSPTRG00000005751) #9	ENSPTRG00000049804 #10	SLC7A1 (ENSPTRG00000005750) #11	ENSPTRG00000046056	MTUS2 (ENSPTRG00000005747) #12	ENSPTRG00000045489	SLC46A3 (ENSPTRG00000005746) #13	POMP (ENSPTRG00000005745) #14	ENSPTRG00000046663 #15	ENSPTRG00000045890 #16	FLT1 (ENSPTRG00000005743) #17	PAN3 (ENSPTRG00000005742) #18	ENSPTRG00000046829	FLT3 (ENSPTRG00000005740) #20	URAD (ENSPTRG00000005739) #21	CDX2 (ENSPTRG00000043330) #22	ENSPTRG00000005737 ##23	PDX1 (ENSPTRG00000005736) #24	GSX1 (ENSPTRG00000005735) #25	POLR1D (ENSPTRG00000005734)	LNX2 (ENSPTRG00000005733) #27	MTIF3 (ENSPTRG00000005732) #28	GTF3A (ENSPTRG00000005730) #29	RASL11A (ENSPTRG00000005729) #30	RPL21 (ENSPTRG00000005728) ##31	USP12 (ENSPTRG00000005727) ##32	GPR12 (ENSPTRG00000046989) #33	WASF3 (ENSPTRG00000005725) #34	CDK8 (ENSPTRG00000005724) #35	RNF6 (ENSPTRG00000005723) #36	SHISA2 (ENSPTRG00000047295) #37
Bonobo	MODERN SPECIES	4	ENSPPAG00000037440 #7	KATNAL1 (ENSPPAG00000033530) #8	UBL3 (ENSPPAG00000027496) #9	ENSPPAG00000015303 #10	SLC7A1 (ENSPPAG00000037016) #11	ENSPPAG00000034238	MTUS2 (ENSPPAG00000032687) #12	ENSPPAG00000027903	SLC46A3 (ENSPPAG00000035795) #13	POMP (ENSPPAG00000036286) #14	ENSPPAG00000027416 #16	ENSPPAG00000033250 #17	ENSPPAG00000030264	PAN3 (ENSPPAG00000027826) #18	FLT3 (ENSPPAG00000015701) #20	CDX2 (ENSPPAG00000032963) #22	ENSPPAG00000032440 ##23	ENSPPAG00000032720 #24	GSX1 (ENSPPAG00000032556) #25	ENSPPAG00000028138	LNX2 (ENSPPAG00000027444) #27	MTIF3 (ENSPPAG00000027304) #28	GTF3A (ENSPPAG00000034725) #29	RASL11A (ENSPPAG00000027996) #30	ENSPPAG00000042860 ##31	ENSPPAG00000007246 ##32	GPR12 (ENSPPAG00000007707) #33	WASF3 (ENSPPAG00000035699) #34	CDK8 (ENSPPAG00000035126) #35	RNF6 (ENSPPAG00000035870) #36	SHISA2 (ENSPPAG00000032206) #37
Human	MODERN SPECIES	4	MEDAG (ENSG00000102802)	ALOX5AP (ENSG00000132965)	USPL1 (ENSG00000132952)	HMGB1 (ENSG00000189403)	UBE2L5 (ENSG00000236444)	KATNAL1 (ENSG00000102781) #8	UBL3 (ENSG00000122042) #9	SLC7A1 (ENSG00000139514) #11	MTUS2 (ENSG00000132938) #12	SLC46A3 (ENSG00000139508) #13	POMP (ENSG00000132963) #14	FLT1 (ENSG00000102755) #17	PAN3 (ENSG00000152520) #18	FLT3 (ENSG00000122025) #20	URAD (ENSG00000183463) #21	CDX2 (ENSG00000165556) #22	PDX1 (ENSG00000139515) #24	GSX1 (ENSG00000169840) #25	POLR1D (ENSG00000186184)	LNX2 (ENSG00000139517) #27	MTIF3 (ENSG00000122033) #28	GTF3A (ENSG00000122034) #29	RASL11A (ENSG00000122035) #30	RPL21 (ENSG00000122026) #31	USP12 (ENSG00000152484) #32	GPR12 (ENSG00000132975) #33	WASF3 (ENSG00000132970) #34	CDK8 (ENSG00000132964) #35	RNF6 (ENSG00000127870) #36	SHISA2 (ENSG00000180730) #37	ATP8A2 (ENSG00000132932)
Gorilla	MODERN SPECIES	4	USPL1 (ENSGGOG00000004673)	HMGB1 (ENSGGOG00000026764)	UBE2L5 (ENSGGOG00000006857)	ENSGGOG00000024714 #7	KATNAL1 (ENSGGOG00000026875) #8	UBL3 (ENSGGOG00000023146) #9	ENSGGOG00000042729	SLC46A3 (ENSGGOG00000014254) #13	POMP (ENSGGOG00000015316) #14	ENSGGOG00000036780 #15	ENSGGOG00000036812 #16	FLT1 (ENSGGOG00000008750) #17	PAN3 (ENSGGOG00000016079) #18	FLT3 (ENSGGOG00000000882) #20	URAD (ENSGGOG00000005489) #21	CDX2 (ENSGGOG00000005487) #22	PDX1 (ENSGGOG00000002569) #24	GSX1 (ENSGGOG00000005011) #25	POLR1D (ENSGGOG00000004235)	LNX2 (ENSGGOG00000016167) #27	MTIF3 (ENSGGOG00000041079) #28	GTF3A (ENSGGOG00000008407) #29	RASL11A (ENSGGOG00000008785) #30	ENSGGOG00000003002 ##31	ENSGGOG00000011358 ##32	GPR12 (ENSGGOG00000000849) #33	WASF3 (ENSGGOG00000012518) #34	CDK8 (ENSGGOG00000006569) #35	RNF6 (ENSGGOG00000006568) #36	ENSGGOG00000025679 #37	ATP8A2 (ENSGGOG00000003045)
Gibbon	MODERN SPECIES	24	SLC7A1 (ENSNLEG00000000622) #11	ENSNLEG00000035615 #12	ENSNLEG00000033304	ENSNLEG00000000618 #12	SLC46A3 (ENSNLEG00000000599) #13	POMP (ENSNLEG00000000572) #14	ENSNLEG00000000571 ##15	ENSNLEG00000033802	ENSNLEG00000030098 #16	FLT1 (ENSNLEG00000000456) #17	PAN3 (ENSNLEG00000000388) #18	ENSNLEG00000029210	ENSNLEG00000035718 #19	FLT3 (ENSNLEG00000000372) #20	URAD (ENSNLEG00000000369) #21	CDX2 (ENSNLEG00000000365) #22	PDX1 (ENSNLEG00000000362) #24	GSX1 (ENSNLEG00000000360) #25	ENSNLEG00000000358	LNX2 (ENSNLEG00000000345) #27	MTIF3 (ENSNLEG00000000343) #28	GTF3A (ENSNLEG00000000331) #29	RASL11A (ENSNLEG00000000329) #30	ENSNLEG00000000327 ##31	ENSNLEG00000000323 ##32	ATP2B4 (ENSNLEG00000018117)	ENSNLEG00000033057	OPTC (ENSNLEG00000018116)	PRELP (ENSNLEG00000018115)	FMOD (ENSNLEG00000018114)	BTG2 (ENSNLEG00000034785)
Cercopithecidae	ANCESTRAL SPECIES	23	ENSGT00910000148031 #10	ENSGT00940000155349 #11	ENSGT00910000147174	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000153889.e.b.a.d.a ##15	ENSGT00910000147093	ENSGT00910000146937 #16	ENSGT00940000158713 #17	ENSGT00910000147887	ENSGT00390000001504 #18	ENSGT00440000038159.p.b #19	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000165378.d	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37
Cercopithecinae	ANCESTRAL SPECIES	20	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630 #8	ENSGT00940000155828.o.a #7	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00910000147174	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00910000147887	ENSGT00390000001504 #18	ENSGT00440000038159.p.b #19	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000165378.d	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37
Vervet Monkey	MODERN SPECIES	22	HSPH1 (ENSCSAG00000017943)	TEX26 (ENSCSAG00000017946)	MEDAG (ENSCSAG00000017948)	ALOX5AP (ENSCSAG00000017950)	USPL1 (ENSCSAG00000017953)	KATNAL1 (ENSCSAG00000017958) #8	UBL3 (ENSCSAG00000017959) #9	SLC7A1 (ENSCSAG00000017961) #11	MTUS2 (ENSCSAG00000017964) #12	SLC46A3 (ENSCSAG00000017966) #13	POMP (ENSCSAG00000017967) #14	FLT1 (ENSCSAG00000017969) #17	PAN3 (ENSCSAG00000017971) #18	FLT3 (ENSCSAG00000017973) #20	URAD (ENSCSAG00000017975) #21	CDX2 (ENSCSAG00000017976) #22	PDX1 (ENSCSAG00000017977) #24	GSX1 (ENSCSAG00000017979) #25	ENSCSAG00000017980 #26	LNX2 (ENSCSAG00000017981) #27	MTIF3 (ENSCSAG00000017982) #28	GTF3A (ENSCSAG00000017983) #29	RASL11A (ENSCSAG00000017985) #30	ENSCSAG00000017986 ##32	GPR12 (ENSCSAG00000018592) #33	WASF3 (ENSCSAG00000017987) #34	CDK8 (ENSCSAG00000017989) #35	RNF6 (ENSCSAG00000017991) #36	SHISA2 (ENSCSAG00000017992) #37	ATP8A2 (ENSCSAG00000017997)	NUP58 (ENSCSAG00000018000)
Cercopithecinae_a	ANCESTRAL SPECIES	19	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00910000147174	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000153783.a	ENSGT00910000147093	ENSGT00910000146937 #16	ENSGT00940000158713 #17	ENSGT00910000147887	ENSGT00390000001504 #18	ENSGT00440000038159.p.b #19	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00910000147903	ENSGT00550000075160.x	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a.m ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000165378.d	ENSGT00940000157104 #35
Cercopithecinae_b	ANCESTRAL SPECIES	28	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00910000147174	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000153783.a	ENSGT00910000147093	ENSGT00910000146937 #16	ENSGT00940000158713 #17	ENSGT00910000147887	ENSGT00390000001504 #18	ENSGT00440000038159.p.b #19	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00910000147903	ENSGT00550000075160.x	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a.m ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000165378.d	ENSGT00940000157104 #35	ENSGT00940000158530 #36
Olive baboon	MODERN SPECIES	6	ALOX5AP (ENSPANG00000020217)	USPL1 (ENSPANG00000005488)	HMGB1 (ENSPANG00000007200)	UBE2L5 (ENSPANG00000043221)	KATNAL1 (ENSPANG00000023364) #8	UBL3 (ENSPANG00000008471) #9	SLC7A1 (ENSPANG00000012138) #11	MTUS2 (ENSPANG00000013682) #12	SLC46A3 (ENSPANG00000020218) #13	POMP (ENSPANG00000046275) #14	ENSPANG00000044787	FLT1 (ENSPANG00000009892) #17	PAN3 (ENSPANG00000001988) #18	FLT3 (ENSPANG00000009315) #20	URAD (ENSPANG00000014018) #21	CDX2 (ENSPANG00000050183) #22	PDX1 (ENSPANG00000012683) #24	ENSPANG00000047094	GSX1 (ENSPANG00000017129) #25	ENSPANG00000038544	ENSPANG00000020259	LNX2 (ENSPANG00000012983) #27	MTIF3 (ENSPANG00000005047) #28	GTF3A (ENSPANG00000012593) #29	RASL11A (ENSPANG00000044196) #30	ENSPANG00000011984 ##31	USP12 (ENSPANG00000011533) #32	GPR12 (ENSPANG00000003061) #33	WASF3 (ENSPANG00000009058) #34	CDK8 (ENSPANG00000001990) #35	RNF6 (ENSPANG00000005719) #36
Cercopithecinae_d	ANCESTRAL SPECIES	93	ENSGT00910000148031 #10	ENSGT00940000155349 #11	ENSGT00910000147174	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000153783.a	ENSGT00910000147093	ENSGT00910000146937 #16	ENSGT00940000158713 #17	ENSGT00910000147887	ENSGT00390000001504 #18	ENSGT00440000038159.p.b #19	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00910000147903	ENSGT00550000075160.x	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a.m ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000165378.d	ENSGT00940000157104 #35	ENSGT00940000158530 #36
Drill	MODERN SPECIES	1324						ENSMLEG00000006158 ##12	SLC46A3 (ENSMLEG00000044293) #13	POMP (ENSMLEG00000039576) #14	ENSMLEG00000042438	ENSMLEG00000036390	ENSMLEG00000038076 #16	FLT1 (ENSMLEG00000034284) #17	ENSMLEG00000003098	PAN3 (ENSMLEG00000008619) #18	FLT3 (ENSMLEG00000037398) #20	CDX2 (ENSMLEG00000037430) #22	PDX1 (ENSMLEG00000032316) #24	ENSMLEG00000041805	ENSMLEG00000041048	LNX2 (ENSMLEG00000039062) #27	MTIF3 (ENSMLEG00000039110) #28	GTF3A (ENSMLEG00000039703) #29	RASL11A (ENSMLEG00000036089) #30	ENSMLEG00000024280 ##31	ENSMLEG00000033598 ##32	GPR12 (ENSMLEG00000002545) #33	WASF3 (ENSMLEG00000040168) #34	CDK8 (ENSMLEG00000040071) #35	RNF6 (ENSMLEG00000038569) #36	SHISA2 (ENSMLEG00000034103) #37	ENSMLEG00000036990
Sooty mangabey	MODERN SPECIES	255		ENSCATG00000034802	SLC7A1 (ENSCATG00000025899) #11	ENSCATG00000037549	MTUS2 (ENSCATG00000041831) #12	SLC46A3 (ENSCATG00000021488) #13	POMP (ENSCATG00000037462) #14	ENSCATG00000033485	ENSCATG00000028829	ENSCATG00000024438 #16	FLT1 (ENSCATG00000034541) #17	PAN3 (ENSCATG00000030893) #18	ENSCATG00000032726 #19	FLT3 (ENSCATG00000014529) #20	URAD (ENSCATG00000007826) #21	CDX2 (ENSCATG00000007363) #22	PDX1 (ENSCATG00000035793) #24	GSX1 (ENSCATG00000028004) #25	ENSCATG00000002488	ENSCATG00000030710	LNX2 (ENSCATG00000035354) #27	MTIF3 (ENSCATG00000007775) #28	GTF3A (ENSCATG00000032361) #29	RASL11A (ENSCATG00000033838) #30	ENSCATG00000032591 ##31	ENSCATG00000038452 ##32	ENSCATG00000018180	GPR12 (ENSCATG00000018217) #33	WASF3 (ENSCATG00000037570) #34	ENSCATG00000032759	CDK8 (ENSCATG00000021984) #35
Macaca	ANCESTRAL SPECIES	19	ENSGT00950000183120.e.b.a.b	ENSGT00940000155828.o.a #7	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000153783.a	ENSGT00910000147093	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00440000038159.p.b #19	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00910000147903	ENSGT00550000075160.x	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36
Pig-tailed macaque	MODERN SPECIES	165	ENSMNEG00000019179	ST6GAL2 (ENSMNEG00000036708)	ENSMNEG00000022050	SLC5A7 (ENSMNEG00000039266)	SLC7A1 (ENSMNEG00000044453) #11	MTUS2 (ENSMNEG00000039238) #12	SLC46A3 (ENSMNEG00000038996) #13	POMP (ENSMNEG00000031404) #14	ENSMNEG00000043904	ENSMNEG00000028177	FLT1 (ENSMNEG00000032149) #17	PAN3 (ENSMNEG00000032817) #18	ENSMNEG00000043801 #19	FLT3 (ENSMNEG00000032442) #20	URAD (ENSMNEG00000045421) #21	CDX2 (ENSMNEG00000043440) #22	PDX1 (ENSMNEG00000032095) #24	GSX1 (ENSMNEG00000032682) #25	ENSMNEG00000008630	ENSMNEG00000034652	LNX2 (ENSMNEG00000040860) #27	MTIF3 (ENSMNEG00000032443) #28	GTF3A (ENSMNEG00000043473) #29	RASL11A (ENSMNEG00000033345) #30	ENSMNEG00000034115 ##31	ENSMNEG00000039505 ##32	GPR12 (ENSMNEG00000010974) #33	WASF3 (ENSMNEG00000028711) #34	CDK8 (ENSMNEG00000031167) #35	RNF6 (ENSMNEG00000000673) #36	ATP8A2 (ENSMNEG00000037319)
Macaca_a	ANCESTRAL SPECIES	19	ENSGT00390000002316	ENSGT00950000183120.e.b.a.b	ENSGT00940000155828.o.a #7	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00910000147093	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00440000038159.p.b #19	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00940000158381 #27	ENSGT01100000263493.a.b.a.a.b.a.b.b	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a.m ##31	ENSGT01100000263493.a.b.a.a.b.b.a.b.a.a.a.a.a.b.a	ENSGT00940000153284.a.h.i.a #32	ENSGT00940000164709.a.b.b.b.b.a	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT01100000263539.b.a.a.a.b.b.a.a.a.a.b.a.a.b
Crab-eating macaque	MODERN SPECIES	8	UBE2L5 (ENSMFAG00000045697)	ENSMFAG00000053527 #7	KATNAL1 (ENSMFAG00000053013) #8	UBL3 (ENSMFAG00000044955) #9	SLC7A1 (ENSMFAG00000043457) #11	MTUS2 (ENSMFAG00000032200) #12	SLC46A3 (ENSMFAG00000030072) #13	POMP (ENSMFAG00000025369) #14	ENSMFAG00000039222	FLT1 (ENSMFAG00000035718) #17	PAN3 (ENSMFAG00000025538) #18	ENSMFAG00000063510 #19	ENSMFAG00000052223	FLT3 (ENSMFAG00000044854) #20	URAD (ENSMFAG00000043442) #21	CDX2 (ENSMFAG00000051158) #22	PDX1 (ENSMFAG00000063371) #24	GSX1 (ENSMFAG00000037158) #25	ENSMFAG00000045264 #26	LNX2 (ENSMFAG00000045245) #27	ENSMFAG00000050995	MTIF3 (ENSMFAG00000045045) #28	GTF3A (ENSMFAG00000044837) #29	RASL11A (ENSMFAG00000044628) #30	ENSMFAG00000053340 ##31	ENSMFAG00000062305	USP12 (ENSMFAG00000031734) #32	ENSMFAG00000050832	ENSMFAG00000058696	GPR12 (ENSMFAG00000033581) #33	WASF3 (ENSMFAG00000006706) #34
Rhesus	MODERN SPECIES	8	ENSMMUG00000052770	HMGB1 (ENSMMUG00000046615)	ENSMMUG00000058466	UBE2L5 (ENSMMUG00000008940)	KATNAL1 (ENSMMUG00000004922) #8	UBL3 (ENSMMUG00000003771) #9	SLC7A1 (ENSMMUG00000008661) #11	MTUS2 (ENSMMUG00000008658) #12	SLC46A3 (ENSMMUG00000013721) #13	POMP (ENSMMUG00000058998) #14	ENSMMUG00000063649	FLT1 (ENSMMUG00000021538) #17	PAN3 (ENSMMUG00000022522) #18	FLT3 (ENSMMUG00000016139) #20	URAD (ENSMMUG00000016138) #21	CDX2 (ENSMMUG00000052070) #22	PDX1 (ENSMMUG00000064615) #24	GSX1 (ENSMMUG00000004507) #25	POLR1D (ENSMMUG00000020386) #26	LNX2 (ENSMMUG00000058786) #27	ENSMMUG00000059867	MTIF3 (ENSMMUG00000009030) #28	GTF3A (ENSMMUG00000009029) #29	RASL11A (ENSMMUG00000049650) #30	ENSMMUG00000058755 ##31	ENSMMUG00000054994	USP12 (ENSMMUG00000021425) #32	ENSMMUG00000050226	ENSMMUG00000057481	GPR12 (ENSMMUG00000060819) #33	WASF3 (ENSMMUG00000005055) #34
Rhinopithecus	ANCESTRAL SPECIES	56	ENSGT00390000004952.b #9	ENSGT00910000148031 #10	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00910000147174	ENSGT00950000183026.A.b ##12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.i #14	ENSGT00940000153889.e.b.a.d.a ##15	ENSGT00910000147093	ENSGT00910000146937 #16	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160.x	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a.m ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000165378.d	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37
Black snub-nosed monkey	MODERN SPECIES	1391		UBL3 (ENSRBIG00000032584) #9	ENSRBIG00000024318 #10	SLC7A1 (ENSRBIG00000030519) #11	MTUS2 (ENSRBIG00000042717) #12	ENSRBIG00000043698	SLC46A3 (ENSRBIG00000039296) #13	ENSRBIG00000028141 #14	ENSRBIG00000040184 ##15	ENSRBIG00000017410	ENSRBIG00000034378 #16	FLT1 (ENSRBIG00000036952) #17	PAN3 (ENSRBIG00000036981) #18	FLT3 (ENSRBIG00000042399) #20	ENSRBIG00000030643	CDX2 (ENSRBIG00000038667) #22	PDX1 (ENSRBIG00000039353) #24	GSX1 (ENSRBIG00000032182) #25	ENSRBIG00000036378	LNX2 (ENSRBIG00000028850) #27	MTIF3 (ENSRBIG00000027271) #28	GTF3A (ENSRBIG00000044964) #29	RASL11A (ENSRBIG00000043749) #30	ENSRBIG00000036802 ##31	ENSRBIG00000041212 ##32	GPR12 (ENSRBIG00000001744) #33	WASF3 (ENSRBIG00000033396) #34	CDK8 (ENSRBIG00000040781) #35	ENSRBIG00000044340	RNF6 (ENSRBIG00000035200) #36	SHISA2 (ENSRBIG00000029204) #37
Golden snub-nosed monkey	MODERN SPECIES	603					ENSRROG00000029261 ##12	SLC46A3 (ENSRROG00000013197) #13	ENSRROG00000035051 #14	ENSRROG00000028953 ##15	ENSRROG00000036924	ENSRROG00000044673 #16	FLT1 (ENSRROG00000044082) #17	PAN3 (ENSRROG00000044835) #18	ENSRROG00000038089	FLT3 (ENSRROG00000032511) #20	URAD (ENSRROG00000032393) #21	CDX2 (ENSRROG00000036416) #22	PDX1 (ENSRROG00000038796) #24	GSX1 (ENSRROG00000032356) #25
Platyrrhini	ANCESTRAL SPECIES	23	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.b.b	ENSGT00950000183120.e.b.b.b	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00950000182965.a.b.b.b.g.a	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37	ENSGT00940000157332
Cebidae	ANCESTRAL SPECIES	26	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.b.b	ENSGT00950000183120.e.b.b.b	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00950000182965.a.b.b.b.g.a	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37	ENSGT00940000157332
Cebidae_a	ANCESTRAL SPECIES	28	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.b.b	ENSGT00940000156630 #8	ENSGT00390000011417.k.d	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00950000182965.a.b.b.b.g.a	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a ##31	ENSGT00940000153284.a.h.j ##32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37	ENSGT00940000157332
Capuchin	MODERN SPECIES	103	ENSCCAG00000032047	ENSCCAG00000028011	KATNA1 (ENSCCAG00000029984) #8	UBL3 (ENSCCAG00000021780) #9	CIAPIN1 (ENSCCAG00000020425)	SLC7A1 (ENSCCAG00000000822) #11	MTUS2 (ENSCCAG00000025313) #12	SLC46A3 (ENSCCAG00000025858) #13	POMP (ENSCCAG00000027871) #14	FLT1 (ENSCCAG00000035784) #17	ENSCCAG00000000468	PAN3 (ENSCCAG00000021218) #18	ENSCCAG00000027785	FLT3 (ENSCCAG00000022587) #20	ENSCCAG00000029430	CDX2 (ENSCCAG00000025801) #22	PDX1 (ENSCCAG00000036295) #24	GSX1 (ENSCCAG00000025929) #25	ENSCCAG00000021349	LNX2 (ENSCCAG00000020368) #27	ENSCCAG00000026568	MTIF3 (ENSCCAG00000036048) #28	GTF3A (ENSCCAG00000029730) #29	RASL11A (ENSCCAG00000021842) #30	ENSCCAG00000031101 ##31	USP12 (ENSCCAG00000023369) ##32	ENSCCAG00000021328	GPR12 (ENSCCAG00000020040) #33	WASF3 (ENSCCAG00000029799) #34	CDK8 (ENSCCAG00000037833) #35	RNF6 (ENSCCAG00000037182) #36
Bolivian squirrel monkey	MODERN SPECIES	42	ENSSBOG00000020013	UBL3 (ENSSBOG00000009211) #9	ENSSBOG00000028866	SLC7A1 (ENSSBOG00000020061) #11	MTUS2 (ENSSBOG00000026505) #12	ENSSBOG00000019071	SLC46A3 (ENSSBOG00000025396) #13	POMP (ENSSBOG00000032229) #14	FLT1 (ENSSBOG00000015766) #17	ENSSBOG00000020899	PAN3 (ENSSBOG00000020298) #18	ENSSBOG00000032374	FLT3 (ENSSBOG00000026666) #20	ENSSBOG00000020835	ENSSBOG00000027743	CDX2 (ENSSBOG00000031573) #22	PDX1 (ENSSBOG00000031436) #24	GSX1 (ENSSBOG00000026103) #25	ENSSBOG00000015416	ENSSBOG00000028482	ENSSBOG00000014497	LNX2 (ENSSBOG00000025148) #27	MTIF3 (ENSSBOG00000030469) #28	GTF3A (ENSSBOG00000002098) #29	RASL11A (ENSSBOG00000025363) #30	ENSSBOG00000031441 ##31	ENSSBOG00000023626 ##32	GPR12 (ENSSBOG00000015914) #33	WASF3 (ENSSBOG00000025202) #34	CDK8 (ENSSBOG00000031790) #35	RNF6 (ENSSBOG00000022531) #36
Marmoset	MODERN SPECIES	17	ENSCJAG00000079039	KATNAL1 (ENSCJAG00000021612) #8	UBL3 (ENSCJAG00000019517) #9	ENSCJAG00000058143	SLC7A1 (ENSCJAG00000019515) #11	ENSCJAG00000072801	MTUS2 (ENSCJAG00000019500) #12	SLC46A3 (ENSCJAG00000019491) #13	POMP (ENSCJAG00000019473) #14	ENSCJAG00000080582	FLT1 (ENSCJAG00000019447) #17	PAN3 (ENSCJAG00000019421) #18	ENSCJAG00000073991	FLT3 (ENSCJAG00000019405) #20	ENSCJAG00000019404	CDX2 (ENSCJAG00000019398) #22	ENSCJAG00000076582	PDX1 (ENSCJAG00000078316) #24	GSX1 (ENSCJAG00000080181) #25	POLR1D (ENSCJAG00000044669)	LNX2 (ENSCJAG00000019379) #27	MTIF3 (ENSCJAG00000019378) #28	GTF3A (ENSCJAG00000077697) #29	RASL11A (ENSCJAG00000019369) #30	ENSCJAG00000044684 ##31	ENSCJAG00000069611	ENSCJAG00000073678	USP12 (ENSCJAG00000019344) #32	ENSCJAG00000086732	GPR12 (ENSCJAG00000019338) #33	WASF3 (ENSCJAG00000019325) #34
Mas night monkey	MODERN SPECIES	331									ENSANAG00000035277 #14	FLT1 (ENSANAG00000027521) #17	ENSANAG00000028102	PAN3 (ENSANAG00000028419) #18	ENSANAG00000034890	FLT3 (ENSANAG00000025242) #20	URAD (ENSANAG00000029018) #21	CDX2 (ENSANAG00000030392) #22	PDX1 (ENSANAG00000033534) #24	GSX1 (ENSANAG00000020508) #25	POLR1D (ENSANAG00000024486)	LNX2 (ENSANAG00000028866) #27	ENSANAG00000024188	MTIF3 (ENSANAG00000031630) #28	GTF3A (ENSANAG00000019293) #29	RASL11A (ENSANAG00000027999) #30	ENSANAG00000023031 ##31	ENSANAG00000032118 ##32	NUP58 (ENSANAG00000023073)	MTMR6 (ENSANAG00000025737)	AMER2 (ENSANAG00000025607)
Tarsier	MODERN SPECIES	5212									OPN5 (ENSTSYG00000005962)	ADGRF4 (ENSTSYG00000002483)	ENSTSYG00000002476	CD2AP (ENSTSYG00000002464)	ENSTSYG00000034627	PAN3 (ENSTSYG00000011845) #18	FLT3 (ENSTSYG00000011237) #20	ENSTSYG00000029265 #22
Strepsirrhini	ANCESTRAL SPECIES	41	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00950000183120.e.b.a.a.b.b.a.b.b	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b ##31	ENSGT00950000182922.a.a.a.b.b.a.a.a ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Lemuriformes	ANCESTRAL SPECIES	18	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a ##31	ENSGT00940000153284.a.h #32	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b.d	ENSGT00950000183171.B	ENSGT00730000111659	ENSGT00940000154936.qb
Lemuriformes_a	ANCESTRAL SPECIES	218														ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b ##31	ENSGT00950000182922.a.a.a.b.b.a.a.a ##31	ENSGT00940000153284.a.h #32
Coquerels sifaka	MODERN SPECIES	436														FLT3 (ENSPCOG00000024372) #20	ENSPCOG00000024369	CDX2 (ENSPCOG00000017128) #22	PDX1 (ENSPCOG00000006631) #24	GSX1 (ENSPCOG00000018002) #25	POLR1D (ENSPCOG00000028175)	LNX2 (ENSPCOG00000027388) #27	MTIF3 (ENSPCOG00000025631) #28	GTF3A (ENSPCOG00000016742) #29	RASL11A (ENSPCOG00000009447) #30	ENSPCOG00000024417 ##31	USP12 (ENSPCOG00000027540) #32	SGCG (ENSPCOG00000024563)	SACS (ENSPCOG00000014915)	TNFRSF19 (ENSPCOG00000024171)	MIPEP (ENSPCOG00000022864)	ENSPCOG00000020115	ENSPCOG00000010750
Greater bamboo lemur	MODERN SPECIES	742														FLT3 (ENSPSMG00000023610) #20	URAD (ENSPSMG00000023629) #21	CDX2 (ENSPSMG00000023632) #22	PDX1 (ENSPSMG00000023637) #24	GSX1 (ENSPSMG00000023639) #25	ENSPSMG00000023644 #26	LNX2 (ENSPSMG00000023653) #27	MTIF3 (ENSPSMG00000023658) #28	GTF3A (ENSPSMG00000023668) #29	RASL11A (ENSPSMG00000023672) #30	ENSPSMG00000023677 ##31	ENSPSMG00000023686	USP12 (ENSPSMG00000023737) #32
Mouse lemur	MODERN SPECIES	4	ALOX5AP (ENSMICG00000001953)	USPL1 (ENSMICG00000045622)	ENSMICG00000007144	KATNAL1 (ENSMICG00000004250) #8	UBL3 (ENSMICG00000033508) #9	SLC7A1 (ENSMICG00000016312) #11	ENSMICG00000032922 #12	ENSMICG00000016299 #12	SLC46A3 (ENSMICG00000016295) #13	POMP (ENSMICG00000032068) #14	FLT1 (ENSMICG00000016251) #17	PAN3 (ENSMICG00000016237) #18	ENSMICG00000027752	FLT3 (ENSMICG00000016201) #20	ENSMICG00000032881	CDX2 (ENSMICG00000031345) #22	PDX1 (ENSMICG00000043487) #24	GSX1 (ENSMICG00000044124) #25	ENSMICG00000016883	LNX2 (ENSMICG00000016873) #27	MTIF3 (ENSMICG00000014777) #28	GTF3A (ENSMICG00000014763) #29	RASL11A (ENSMICG00000029724) #30	ENSMICG00000006269 #32	ENSMICG00000028275	SGCG (ENSMICG00000038162)	SACS (ENSMICG00000034895)	ENSMICG00000042745	MIPEP (ENSMICG00000036068)	ENSMICG00000047845	ENSMICG00000045668
Bushbaby	MODERN SPECIES	235	USPL1 (ENSOGAG00000015490)	ENSOGAG00000026314	ENSOGAG00000030054	ENSOGAG00000003205	KATNAL1 (ENSOGAG00000011308) #8	UBL3 (ENSOGAG00000004035) #9	SLC7A1 (ENSOGAG00000010813) #11	MTUS2 (ENSOGAG00000010807) #12	SLC46A3 (ENSOGAG00000006042) #13	POMP (ENSOGAG00000006044) #14	FLT1 (ENSOGAG00000014611) #17	PAN3 (ENSOGAG00000014604) #18	ENSOGAG00000031357	FLT3 (ENSOGAG00000016694) #20	ENSOGAG00000016692	CDX2 (ENSOGAG00000026117) #22	PDX1 (ENSOGAG00000016688) #24	GSX1 (ENSOGAG00000011242) #25	POLR1D (ENSOGAG00000014601)	LNX2 (ENSOGAG00000014599) #27	MTIF3 (ENSOGAG00000014597) #28	GTF3A (ENSOGAG00000014589) #29	RASL11A (ENSOGAG00000008177) #30	ENSOGAG00000008181 ##31	ENSOGAG00000030191	USP12 (ENSOGAG00000030639) #32	GPR12 (ENSOGAG00000006144) #33	WASF3 (ENSOGAG00000006728) #34	ENSOGAG00000026985	CDK8 (ENSOGAG00000006569) #35	RNF6 (ENSOGAG00000024893) #36
Euarchontoglires_A	ANCESTRAL SPECIES	21	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Tree shrew	MODERN SPECIES	7903															URAD (ENSTBEG00000005892) #21	CDX2 (ENSTBEG00000006155) #22
Glires	ANCESTRAL SPECIES	22	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j #36	ENSGT00940000165049
Lagomorpha	ANCESTRAL SPECIES	166								ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b ##31	ENSGT00940000153284.a.h #32
Rabbit	MODERN SPECIES	468							SLC7A1 (ENSOCUG00000013493) #11	ENSOCUG00000030839 #12	ENSOCUG00000013473 #12	SLC46A3 (ENSOCUG00000010129) #13	POMP (ENSOCUG00000010137) #14	FLT1 (ENSOCUG00000008523) #17	PAN3 (ENSOCUG00000008509) #18	FLT3 (ENSOCUG00000004897) #20	URAD (ENSOCUG00000026219) #21	CDX2 (ENSOCUG00000004893) #22	PDX1 (ENSOCUG00000004891) #24	GSX1 (ENSOCUG00000023424) #25	ENSOCUG00000015706 #26	LNX2 (ENSOCUG00000015683) #27	MTIF3 (ENSOCUG00000011721) #28	GTF3A (ENSOCUG00000011713) #29	ENSOCUG00000038419	RASL11A (ENSOCUG00000008121) #30	ENSOCUG00000002506 ##31	USP12 (ENSOCUG00000007088) #32
Pika	MODERN SPECIES	1637															URAD (ENSOPRG00000003060) #21	CDX2 (ENSOPRG00000003043) #22	ENSOPRG00000003035 #26	LNX2 (ENSOPRG00000003017) #27
Rodentia	ANCESTRAL SPECIES	22	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j #36	ENSGT00940000165049
Rodentia_B	ANCESTRAL SPECIES	25	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00950000182922.a.a.b ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j #36
Kangaroo rat	MODERN SPECIES	421	Medag (ENSDORG00000008557)	Alox5ap (ENSDORG00000006041)	Uspl1 (ENSDORG00000007790)	ENSDORG00000027930	Katnal1 (ENSDORG00000012794) #8	Ubl3 (ENSDORG00000026903) #9	ENSDORG00000026706	Slc7a1 (ENSDORG00000006086) #11	ENSDORG00000025782 #12	Slc46a3 (ENSDORG00000012433) #13	Pomp (ENSDORG00000012432) #14	Flt1 (ENSDORG00000014729) #17	Pan3 (ENSDORG00000014727) #18	Flt3 (ENSDORG00000010727) #20	Urad (ENSDORG00000025006)	Cdx2 (ENSDORG00000005495) #22	Pdx1 (ENSDORG00000008418) #24	Gsx1 (ENSDORG00000029182) #25	Polr1d (ENSDORG00000029155)	Lnx2 (ENSDORG00000013453) #27	ENSDORG00000006081 #28	Gtf3a (ENSDORG00000006079) #29	Rasl11a (ENSDORG00000026016) #30	ENSDORG00000002226 #31	ENSDORG00000002224	Usp12 (ENSDORG00000009137) #32	Gpr12 (ENSDORG00000011141) #33	Wasf3 (ENSDORG00000003345) #34	Cdk8 (ENSDORG00000011151) #35	Rnf6 (ENSDORG00000029431) #36
Myomorpha	ANCESTRAL SPECIES	46	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j #36
Muroidea	ANCESTRAL SPECIES	68	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j #36
Muroidea_A	ANCESTRAL SPECIES	27	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.d ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j #36	ENSGT00950000182958.a.b.b.j.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.a.a.b
Cricetidae	ANCESTRAL SPECIES	27	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.d ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j.a #36	ENSGT00950000182958.a.b.b.j.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.a.a.b
Cricetinae	ANCESTRAL SPECIES	19	ENSGT00940000162967	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.d ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j.a #36	ENSGT00950000182958.a.b.b.j.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.a.a.b.a
Golden Hamster	MODERN SPECIES	762	Medag (ENSMAUG00000009604)	Alox5ap (ENSMAUG00000012262)	ENSMAUG00000013736	ENSMAUG00000017646	Katnal1 (ENSMAUG00000007731) #8	Ubl3 (ENSMAUG00000016399) #9	Slc7a1 (ENSMAUG00000000359) #11	ENSMAUG00000018323 #12	ENSMAUG00000020285	Pomp (ENSMAUG00000006509) #14	Flt1 (ENSMAUG00000006859) #17	Pan3 (ENSMAUG00000021155) #18	Flt3 (ENSMAUG00000011952) #20	ENSMAUG00000001106	Urad (ENSMAUG00000019946)	Cdx2 (ENSMAUG00000020822) #22	Pdx1 (ENSMAUG00000021082) #24	Polr1d (ENSMAUG00000001946)	Lnx2 (ENSMAUG00000009457) #27	Mtif3 (ENSMAUG00000011167) #28	Gtf3a (ENSMAUG00000016253) #29	Rasl11a (ENSMAUG00000019356) #30	ENSMAUG00000006957 ##31	Usp12 (ENSMAUG00000010310) #32	ENSMAUG00000010877	Gpr12 (ENSMAUG00000015064) #33	Rfc3 (ENSMAUG00000016464)
Chinese hamster chok1gshd	MODERN SPECIES	130	ENSCGRG00001025063	Alox5ap (ENSCGRG00001018470)	ENSCGRG00001018342	Katnal1 (ENSCGRG00001024027) #8	Ubl3 (ENSCGRG00001002093) #9	Slc7a1 (ENSCGRG00001019393) #11	Mtus2 (ENSCGRG00001023648) #12	ENSCGRG00001001206	Slc46a3 (ENSCGRG00001023870) #13	Pomp (ENSCGRG00001000803) #14	Flt1 (ENSCGRG00001000764) #17	Pan3 (ENSCGRG00001024986) #18	ENSCGRG00001012489	Flt3 (ENSCGRG00001010328) #20	Urad (ENSCGRG00001021146)	Cdx2 (ENSCGRG00001024259) #22	Pdx1 (ENSCGRG00001024891) #24	Gsx1 (ENSCGRG00001017641) #25	Polr1d (ENSCGRG00001021251)	Lnx2 (ENSCGRG00001022751) #27	ENSCGRG00001024532	Mtif3 (ENSCGRG00001024612) #28	Gtf3a (ENSCGRG00001024969) #29	Rasl11a (ENSCGRG00001014752) #30	Rpl21 (ENSCGRG00001007602) ##31	ENSCGRG00001021742 #32	Gpr12 (ENSCGRG00001003285) #33	Wasf3 (ENSCGRG00001003303) #34	Cdk8 (ENSCGRG00001010747) #35	Rnf6 (ENSCGRG00001010459) #36	ENSCGRG00001020483
Cricetidae_B	ANCESTRAL SPECIES	49	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.d ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j.a #36	ENSGT00940000162113	ENSGT00950000182958.a.b.b.j.a.a.a.b
Prairie vole	MODERN SPECIES	7	Medag (ENSMOCG00000012447)	Alox5ap (ENSMOCG00000018258)	ENSMOCG00000018612	ENSMOCG00000018161	Katnal1 (ENSMOCG00000013914) #8	Ubl3 (ENSMOCG00000012896) #9	Slc7a1 (ENSMOCG00000022298) #11	Mtus2 (ENSMOCG00000013900) #12	Slc46a3 (ENSMOCG00000007090) #13	Pomp (ENSMOCG00000006131) #14	ENSMOCG00000000648	Flt1 (ENSMOCG00000019790) #17	Pan3 (ENSMOCG00000001443) #18	Flt3 (ENSMOCG00000015945) #20	Urad (ENSMOCG00000018154)	Cdx2 (ENSMOCG00000010222) #22	Pdx1 (ENSMOCG00000007886) #24	Gsx1 (ENSMOCG00000002374) #25	Polr1d (ENSMOCG00000021288)	Lnx2 (ENSMOCG00000022088) #27	Mtif3 (ENSMOCG00000017226) #28	Gtf3a (ENSMOCG00000004408) #29	ENSMOCG00000017124	Rasl11a (ENSMOCG00000000626) #30	Rpl21 (ENSMOCG00000003487) ##31	Usp12 (ENSMOCG00000001714) #32	Gpr12 (ENSMOCG00000009890) #33	ENSMOCG00000017944	Rnf6 (ENSMOCG00000006180) #36	ENSMOCG00000021837 #35	ENSMOCG00000014918
Northern American deer mouse	MODERN SPECIES	15	Medag (ENSPEMG00000000331)	Alox5ap (ENSPEMG00000000576)	Uspl1 (ENSPEMG00000003660)	ENSPEMG00000000834	Katnal1 (ENSPEMG00000009164) #8	Ubl3 (ENSPEMG00000010779) #9	Slc7a1 (ENSPEMG00000006808) #11	Mtus2 (ENSPEMG00000011863) #12	ENSPEMG00000024696	Slc46a3 (ENSPEMG00000014019) #13	ENSPEMG00000014341 #14	Flt1 (ENSPEMG00000019000) #17	Pan3 (ENSPEMG00000008992) #18	Flt3 (ENSPEMG00000012278) #20	Urad (ENSPEMG00000025423)	Cdx2 (ENSPEMG00000000632) #22	Pdx1 (ENSPEMG00000001176) #24	Gsx1 (ENSPEMG00000004992) #25	Polr1d (ENSPEMG00000006336)	Lnx2 (ENSPEMG00000008280) #27	Mtif3 (ENSPEMG00000000930) #28	Gtf3a (ENSPEMG00000003201) #29	Rasl11a (ENSPEMG00000004475) #30	Rpl21 (ENSPEMG00000006041) ##31	Usp12 (ENSPEMG00000008193) #32	Gpr12 (ENSPEMG00000010665) #33	ENSPEMG00000030961	Wasf3 (ENSPEMG00000011510) #34	Cdk8 (ENSPEMG00000012706) #35	ENSPEMG00000015454 #36	ENSPEMG00000027927
Murinae	ANCESTRAL SPECIES	28	ENSGT00390000018451	ENSGT00960000191336	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.c.c.b ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j #36	ENSGT00950000182958.a.b.b.j.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.a.a.b
Mus	ANCESTRAL SPECIES	17	ENSGT00390000018451	ENSGT00960000191336	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.c.c.b ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j #36	ENSGT00950000182958.a.b.b.j.a.a.a.a.c	ENSGT00950000182958.a.b.b.j.a.a.a.b
Mus_A	ANCESTRAL SPECIES	6	ENSGT00390000018451	ENSGT00960000191336	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.c.c.b ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j #36	ENSGT00950000182958.a.b.b.j.a.a.a.a.c	ENSGT00950000182958.a.b.b.j.a.a.a.b
Mus_B	ANCESTRAL SPECIES	4	ENSGT00390000018451	ENSGT00960000191336	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.c.c.b ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j #36	ENSGT00950000182958.a.b.b.j.a.a.a.a.c.a.a	ENSGT00950000182958.a.b.b.j.a.a.a.b.i.b
Mouse	MODERN SPECIES	14	Tex26 (ENSMUSG00000029660)	Medag (ENSMUSG00000029659)	Alox5ap (ENSMUSG00000060063)	Uspl1 (ENSMUSG00000041264)	Hmgb1 (ENSMUSG00000066551)	Katnal1 (ENSMUSG00000041298) #8	Ubl3 (ENSMUSG00000001687) #9	Slc7a1 (ENSMUSG00000041313) #11	Mtus2 (ENSMUSG00000029651) #12	Slc46a3 (ENSMUSG00000029650) #13	Pomp (ENSMUSG00000029649) #14	Flt1 (ENSMUSG00000029648) #17	Pan3 (ENSMUSG00000029647) #18	Flt3 (ENSMUSG00000042817) #20	Urad (ENSMUSG00000075543)	Cdx2 (ENSMUSG00000029646) #22	Pdx1 (ENSMUSG00000029644) #24	Gsx1 (ENSMUSG00000053129) #25	Polr1d (ENSMUSG00000029642)	Lnx2 (ENSMUSG00000016520) #27	Mtif3 (ENSMUSG00000016510) #28	Gtf3a (ENSMUSG00000016503) #29	Rasl11a (ENSMUSG00000029641) #30	Rpl21 (ENSMUSG00000041453) ##31	Usp12 (ENSMUSG00000029640) #32	Gpr12 (ENSMUSG00000041468) #33	Gm3415 (ENSMUSG00000095557)	Gm3409 (ENSMUSG00000096664)	Gm3404 (ENSMUSG00000079091)	Gm3402 (ENSMUSG00000041505)	4930449I24Rik (ENSMUSG00000079093)
Mus_C	ANCESTRAL SPECIES	4	ENSGT00390000018451	ENSGT00960000191336	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.c.c.b ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j #36	ENSGT00940000155423.e.b	ENSGT00940000162113
Steppe mouse	MODERN SPECIES	3364	Alox5ap (ENSMSIG00000023243)	Uspl1 (ENSMSIG00000023285)	ENSMSIG00000023332	Katnal1 (ENSMSIG00000023377) #8	Ubl3 (ENSMSIG00000023402) #9	Slc7a1 (ENSMSIG00000023421) #11	Mtus2 (ENSMSIG00000023484) #12	Slc46a3 (ENSMSIG00000023578) #13	Pomp (ENSMSIG00000023598) #14	ENSMSIG00000023628	Flt1 (ENSMSIG00000023642) #17	Pan3 (ENSMSIG00000023687) #18	Flt3 (ENSMSIG00000023851) #20	ENSMSIG00000023930	ENSMSIG00000023941 #21	Cdx2 (ENSMSIG00000023947) #22	Pdx1 (ENSMSIG00000023956) #24	Gsx1 (ENSMSIG00000023969) #25	ENSMSIG00000023978	Lnx2 (ENSMSIG00000023999) #27	Mtif3 (ENSMSIG00000024005) #28	Gtf3a (ENSMSIG00000024026) #29	Rasl11a (ENSMSIG00000024039) #30	ENSMSIG00000024049 ##31	Usp12 (ENSMSIG00000024096) #32	ENSMSIG00000024119	Gpr12 (ENSMSIG00000024129) #33	Wasf3 (ENSMSIG00000024134) #34	Cdk8 (ENSMSIG00000024179) #35	Rnf6 (ENSMSIG00000024340) #36	ENSMSIG00000024355
spretus	MODERN SPECIES	14	Medag (MGP_SPRETEiJ_G0029050)	Alox5ap (MGP_SPRETEiJ_G0029049)	Uspl1 (MGP_SPRETEiJ_G0029048)	MGP_SPRETEiJ_G0029047	MGP_SPRETEiJ_G0029046 #8	MGP_SPRETEiJ_G0029045 #8	Ubl3 (MGP_SPRETEiJ_G0029044) #9	Slc7a1 (MGP_SPRETEiJ_G0029043) #11	Mtus2 (MGP_SPRETEiJ_G0029042) #12	Slc46a3 (MGP_SPRETEiJ_G0029041) #13	Pomp (MGP_SPRETEiJ_G0029040) #14	Flt1 (MGP_SPRETEiJ_G0029039) #17	Pan3 (MGP_SPRETEiJ_G0029038) #18	Flt3 (MGP_SPRETEiJ_G0029037) #20	Urad (MGP_SPRETEiJ_G0029036)	Cdx2 (MGP_SPRETEiJ_G0029035) #22	Pdx1 (MGP_SPRETEiJ_G0029034) #24	Gsx1 (MGP_SPRETEiJ_G0029033) #25	Polr1d (MGP_SPRETEiJ_G0029032)	Lnx2 (MGP_SPRETEiJ_G0029031) #27	Mtif3 (MGP_SPRETEiJ_G0029030) #28	Gtf3a (MGP_SPRETEiJ_G0029029) #29	Rasl11a (MGP_SPRETEiJ_G0029028) #30	MGP_SPRETEiJ_G0029027 ##31	Usp12 (MGP_SPRETEiJ_G0029026) #32	Gpr12 (MGP_SPRETEiJ_G0029025) #33	Wasf3 (MGP_SPRETEiJ_G0029024) #34	Cdk8 (MGP_SPRETEiJ_G0029023) #35	Rnf6 (MGP_SPRETEiJ_G0029022) #36	MGP_SPRETEiJ_G0029021	MGP_SPRETEiJ_G0029020
Ryukyu mouse	MODERN SPECIES	14	Medag (MGP_CAROLIEiJ_G0028052)	MGP_CAROLIEiJ_G0028051	Uspl1 (MGP_CAROLIEiJ_G0028050)	MGP_CAROLIEiJ_G0028049	MGP_CAROLIEiJ_G0028048 #8	MGP_CAROLIEiJ_G0028047 #8	Ubl3 (MGP_CAROLIEiJ_G0028046) #9	Slc7a1 (MGP_CAROLIEiJ_G0028045) #11	Mtus2 (MGP_CAROLIEiJ_G0028044) #12	Slc46a3 (MGP_CAROLIEiJ_G0028043) #13	Pomp (MGP_CAROLIEiJ_G0028042) #14	Flt1 (MGP_CAROLIEiJ_G0028041) #17	Pan3 (MGP_CAROLIEiJ_G0028040) #18	Flt3 (MGP_CAROLIEiJ_G0028039) #20	Urad (MGP_CAROLIEiJ_G0028038)	Cdx2 (MGP_CAROLIEiJ_G0028037) #22	Pdx1 (MGP_CAROLIEiJ_G0028036) #24	Gsx1 (MGP_CAROLIEiJ_G0028035) #25	Polr1d (MGP_CAROLIEiJ_G0028034)	Lnx2 (MGP_CAROLIEiJ_G0028033) #27	Mtif3 (MGP_CAROLIEiJ_G0028032) #28	Gtf3a (MGP_CAROLIEiJ_G0028031) #29	Rasl11a (MGP_CAROLIEiJ_G0028030) #30	Rpl21 (MGP_CAROLIEiJ_G0028029) ##31	Usp12 (MGP_CAROLIEiJ_G0028028) #32	Gpr12 (MGP_CAROLIEiJ_G0028027) #33	Wasf3 (MGP_CAROLIEiJ_G0028026) #34	Cdk8 (MGP_CAROLIEiJ_G0028025) #35	Rnf6 (MGP_CAROLIEiJ_G0028024) #36	MGP_CAROLIEiJ_G0028023	MGP_CAROLIEiJ_G0028021
Shrew mouse	MODERN SPECIES	15	Medag (MGP_PahariEiJ_G0024618)	Alox5ap (MGP_PahariEiJ_G0024617)	Uspl1 (MGP_PahariEiJ_G0024616)	MGP_PahariEiJ_G0024615	MGP_PahariEiJ_G0024614 #8	MGP_PahariEiJ_G0024613 #8	Ubl3 (MGP_PahariEiJ_G0024612) #9	Slc7a1 (MGP_PahariEiJ_G0024611) #11	Mtus2 (MGP_PahariEiJ_G0024610) #12	Slc46a3 (MGP_PahariEiJ_G0024609) #13	MGP_PahariEiJ_G0024608	Flt1 (MGP_PahariEiJ_G0024607) #17	Pan3 (MGP_PahariEiJ_G0024606) #18	Flt3 (MGP_PahariEiJ_G0024605) #20	Urad (MGP_PahariEiJ_G0024604)	Cdx2 (MGP_PahariEiJ_G0024603) #22	Pdx1 (MGP_PahariEiJ_G0024602) #24	Gsx1 (MGP_PahariEiJ_G0024601) #25	Polr1d (MGP_PahariEiJ_G0024600)	Lnx2 (MGP_PahariEiJ_G0024599) #27	Mtif3 (MGP_PahariEiJ_G0024598) #28	Gtf3a (MGP_PahariEiJ_G0024597) #29	Rasl11a (MGP_PahariEiJ_G0024596) #30	MGP_PahariEiJ_G0024595 ##31	Usp12 (MGP_PahariEiJ_G0024594) #32	Gpr12 (MGP_PahariEiJ_G0024593) #33	Wasf3 (MGP_PahariEiJ_G0024592) #34	Cdk8 (MGP_PahariEiJ_G0024591) #35	Rnf6 (MGP_PahariEiJ_G0024590) #36	MGP_PahariEiJ_G0024588	MGP_PahariEiJ_G0024589
Rat	MODERN SPECIES	3	Medag (ENSRNOG00000000906)	AABR07035203.1 (ENSRNOG00000060198)	Alox5ap (ENSRNOG00000000907)	Uspl1 (ENSRNOG00000000909)	AABR07035218.1 (ENSRNOG00000029813)	Rpl35a-ps6 (ENSRNOG00000069961)	Katnal1 (ENSRNOG00000047618) #8	Slc7a1 (ENSRNOG00000000924) #11	Mtus2 (ENSRNOG00000032410) #12	Slc46a3 (ENSRNOG00000000937) #13	Pomp (ENSRNOG00000049229) ##14	Flt1 (ENSRNOG00000000940) #17	Pan3 (ENSRNOG00000000942) #18	Flt3 (ENSRNOG00000054764) #20	Urad (ENSRNOG00000050360)	Cdx2 (ENSRNOG00000032759) #22	Pdx1 (ENSRNOG00000046458) #24	Gsx1 (ENSRNOG00000000952) #25	Polr1d (ENSRNOG00000000954)	Lnx2 (ENSRNOG00000000955) #27	Mtif3 (ENSRNOG00000070811) #28	Gtf3a (ENSRNOG00000050016) #29	Rasl11a (ENSRNOG00000000956) #30	Rpl21 (ENSRNOG00000000957) ##31	Usp12 (ENSRNOG00000033411) #32	Gpr12 (ENSRNOG00000039832) #33	Wasf3 (ENSRNOG00000048898) #34	LOC120095889 (ENSRNOG00000050264)	LOC684427 (ENSRNOG00000069792)	AABR07035338.1 (ENSRNOG00000039819) #35	Rnf6 (ENSRNOG00000000968) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1878	Medag (ENSNGAG00000021713)	Alox5ap (ENSNGAG00000010455)	Uspl1 (ENSNGAG00000021450)	ENSNGAG00000020735	Katnal1 (ENSNGAG00000018344) #8	Ubl3 (ENSNGAG00000021531) #9	Slc7a1 (ENSNGAG00000011095) #11	ENSNGAG00000023043 #12	ENSNGAG00000011243 ##12	ENSNGAG00000022087	Slc46a3 (ENSNGAG00000023221) #13	ENSNGAG00000019389 #14	Flt1 (ENSNGAG00000022615) #17	Pan3 (ENSNGAG00000005671) #18	Flt3 (ENSNGAG00000022203) #20	Cdx2 (ENSNGAG00000019299) #22	Pdx1 (ENSNGAG00000024275) #24	ENSNGAG00000011527	Gsx1 (ENSNGAG00000013964) #25	ENSNGAG00000020643	ENSNGAG00000019459	Polr1d (ENSNGAG00000006014)	Lnx2 (ENSNGAG00000010972) #27	Mtif3 (ENSNGAG00000022911) #28	Gtf3a (ENSNGAG00000023691) #29	Rasl11a (ENSNGAG00000021721) #30	ENSNGAG00000022375 ##31	ENSNGAG00000012493	Usp12 (ENSNGAG00000023867) #32	ENSNGAG00000011492
Lesser Egyptian jerboa	MODERN SPECIES	73	Tex26 (ENSJJAG00000007098)	Medag (ENSJJAG00000017396)	Alox5ap (ENSJJAG00000004614)	ENSJJAG00000014544	ENSJJAG00000000696	Katnal1 (ENSJJAG00000011429) #8	Ubl3 (ENSJJAG00000016514) #9	Slc7a1 (ENSJJAG00000022034) #11	ENSJJAG00000008307 #12	Slc46a3 (ENSJJAG00000015117) #13	Pomp (ENSJJAG00000014017) #14	Flt1 (ENSJJAG00000009276) #17	Pan3 (ENSJJAG00000013560) #18	Flt3 (ENSJJAG00000004796) #20	Urad (ENSJJAG00000022682)	Cdx2 (ENSJJAG00000010229) #22	Pdx1 (ENSJJAG00000017468) #24	Gsx1 (ENSJJAG00000021574) #25	ENSJJAG00000009076	ENSJJAG00000022671	Lnx2 (ENSJJAG00000014998) #27	Mtif3 (ENSJJAG00000013006) #28	Gtf3a (ENSJJAG00000011501) #29	Rasl11a (ENSJJAG00000020910) #30	Usp12 (ENSJJAG00000019341) #32	Gpr12 (ENSJJAG00000012507) #33	Wasf3 (ENSJJAG00000018294) #34	Cdk8 (ENSJJAG00000009532) #35	Rnf6 (ENSJJAG00000023994) #36	Vstm2b (ENSJJAG00000022517)	Pop4 (ENSJJAG00000013376)
Rodentia_A	ANCESTRAL SPECIES	22	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j #36	ENSGT00940000165049
Sciuridae	ANCESTRAL SPECIES	34	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a.g.a ##32	ENSGT00950000182922.a.a.a.b.a.a.b.a ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33
Marmotini	ANCESTRAL SPECIES	29	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.b.b	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a.g.a ##32	ENSGT00950000182922.a.a.a.b.a.a.b.a ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00940000158453.a	ENSGT01050000244955.a.a	ENSGT01050000244897.a.b.b.b
Alpin marmot	MODERN SPECIES	13	TEX26 (ENSMMMG00000021931)	MEDAG (ENSMMMG00000021928)	ALOX5AP (ENSMMMG00000021924)	ENSMMMG00000021912	ENSMMMG00000021875	KATNAL1 (ENSMMMG00000021861) #8	UBL3 (ENSMMMG00000021836) #9	SLC7A1 (ENSMMMG00000021811) #11	ENSMMMG00000021777 #12	SLC46A3 (ENSMMMG00000021759) #13	POMP (ENSMMMG00000021745) #14	FLT1 (ENSMMMG00000021722) #17	PAN3 (ENSMMMG00000021592) #18	FLT3 (ENSMMMG00000021498) #20	ENSMMMG00000021485	CDX2 (ENSMMMG00000021482) #22	GSX1 (ENSMMMG00000021480) #25	POLR1D (ENSMMMG00000021469)	LNX2 (ENSMMMG00000021459) #27	MTIF3 (ENSMMMG00000021440) #28	GTF3A (ENSMMMG00000021436) #29	RASL11A (ENSMMMG00000021424) #30	RPL21 (ENSMMMG00000021415) #31	ENSMMMG00000021402 ##32	ENSMMMG00000021396	GPR12 (ENSMMMG00000021388) #33	SLITRK5 (ENSMMMG00000021362)	ENSMMMG00000021355	GPC5 (ENSMMMG00000021337)	GPC6 (ENSMMMG00000021294)	DCT (ENSMMMG00000021259)
Marmotini_b	ANCESTRAL SPECIES	39	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.a ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00940000158453.a	ENSGT01050000244955.a.a	ENSGT01050000244897.a.b.b.b	ENSGT00940000156856	ENSGT00940000159196
Arctic ground squirrel	MODERN SPECIES	58	MEDAG (ENSUPAG00010000596)	ALOX5AP (ENSUPAG00010000582)	USPL1 (ENSUPAG00010000537)	ENSUPAG00010000514	KATNAL1 (ENSUPAG00010000483) #8	UBL3 (ENSUPAG00010000449) #9	SLC7A1 (ENSUPAG00010000429) #11	ENSUPAG00010000338 #12	ENSUPAG00010000323	SLC46A3 (ENSUPAG00010000307) #13	POMP (ENSUPAG00010000279) #14	FLT1 (ENSUPAG00010000212) #17	PAN3 (ENSUPAG00010000039) #18	FLT3 (ENSUPAG00010018139) #20	ENSUPAG00010018133	CDX2 (ENSUPAG00010018125) #22	PDX1 (ENSUPAG00010018122) #24	GSX1 (ENSUPAG00010018112) #25	POLR1D (ENSUPAG00010018107)	LNX2 (ENSUPAG00010018096) #27	MTIF3 (ENSUPAG00010018090) #28	GTF3A (ENSUPAG00010018082) #29	RASL11A (ENSUPAG00010018073) #30	ENSUPAG00010018061 ##31	USP12 (ENSUPAG00010018049) #32	GPR12 (ENSUPAG00010018043) #33	SLITRK5 (ENSUPAG00010018031)
Squirrel	MODERN SPECIES	72	ENSSTOG00000020892	MEDAG (ENSSTOG00000003534)	ALOX5AP (ENSSTOG00000010915)	USPL1 (ENSSTOG00000028023)	ENSSTOG00000000443	KATNAL1 (ENSSTOG00000008802) #8	UBL3 (ENSSTOG00000012777) #9	SLC7A1 (ENSSTOG00000012771) #11	ENSSTOG00000022794 #12	SLC46A3 (ENSSTOG00000013694) #13	POMP (ENSSTOG00000013687) #14	FLT1 (ENSSTOG00000021178) #17	PAN3 (ENSSTOG00000009453) #18	FLT3 (ENSSTOG00000002925) #20	ENSSTOG00000028014	ENSSTOG00000002918 #22	PDX1 (ENSSTOG00000028173) #24	GSX1 (ENSSTOG00000029234) #25	POLR1D (ENSSTOG00000013877)	LNX2 (ENSSTOG00000013869) #27	MTIF3 (ENSSTOG00000013866) #28	GTF3A (ENSSTOG00000013853) #29	RASL11A (ENSSTOG00000023879) #30	ENSSTOG00000033637 ##31	USP12 (ENSSTOG00000011364) #32	ENSSTOG00000023839	GPR12 (ENSSTOG00000011362) #33	SLITRK5 (ENSSTOG00000022257)	ENSSTOG00000029870	GPC6 (ENSSTOG00000025649)	DCT (ENSSTOG00000010422)
Eurasian red squirrel	MODERN SPECIES	13	TEX26 (ENSSVLG00005022083)	MEDAG (ENSSVLG00005022152)	ALOX5AP (ENSSVLG00005022177)	USPL1 (ENSSVLG00005022232)	ENSSVLG00005022302	KATNAL1 (ENSSVLG00005022343) #8	UBL3 (ENSSVLG00005022374) #9	SLC7A1 (ENSSVLG00005022416) #11	MTUS2 (ENSSVLG00005022484) #12	SLC46A3 (ENSSVLG00005022784) #13	POMP (ENSSVLG00005022839) #14	FLT1 (ENSSVLG00005022893) #17	PAN3 (ENSSVLG00005022998) #18	FLT3 (ENSSVLG00005023095) #20	URAD (ENSSVLG00005023233) #21	CDX2 (ENSSVLG00005023249) #22	PDX1 (ENSSVLG00005023276) #24	GSX1 (ENSSVLG00005023295) #25	POLR1D (ENSSVLG00005023318)	LNX2 (ENSSVLG00005023366) #27	MTIF3 (ENSSVLG00005023396) #28	GTF3A (ENSSVLG00005023413) #29	RASL11A (ENSSVLG00005023466) #30	ENSSVLG00005000213 ##31	ENSSVLG00005000350 ##32	GPR12 (ENSSVLG00005000385) #33	ENSSVLG00005000420	ENSSVLG00005000440	SLITRK5 (ENSSVLG00005000517)	ENSSVLG00005000527	ENSSVLG00005000550
Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.p #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647.c #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j #36	ENSGT00940000165049
Naked mole-rat female	MODERN SPECIES	2	USPL1 (ENSHGLG00000036213)	ENSHGLG00000003352	KATNAL1 (ENSHGLG00000003538) #8	UBL3 (ENSHGLG00000040587) #9	ENSHGLG00000033244	ENSHGLG00000019220 #11	ENSHGLG00000013589 #12	ENSHGLG00000012383	ENSHGLG00000039882 ##14	SLC46A3 (ENSHGLG00000007999) #13	ENSHGLG00000008991 #14	FLT1 (ENSHGLG00000003643) #17	PAN3 (ENSHGLG00000018782) #18	FLT3 (ENSHGLG00000005717) #20	URAD (ENSHGLG00000008479) #21	CDX2 (ENSHGLG00000009166) #22	PDX1 (ENSHGLG00000010243) #24	GSX1 (ENSHGLG00000039858) #25	ENSHGLG00000003202 #26	POLR1D (ENSHGLG00000039229)	LNX2 (ENSHGLG00000003410) #27	MTIF3 (ENSHGLG00000003959) #28	ENSHGLG00000004173 #29	RASL11A (ENSHGLG00000005304) #30	ENSHGLG00000005660 ##31	ENSHGLG00000006711 #32	GPR12 (ENSHGLG00000042343) #33	WASF3 (ENSHGLG00000006350) #34	ENSHGLG00000006446	CDK8 (ENSHGLG00000007563) #35	RNF6 (ENSHGLG00000008194) #36
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.p #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647.c #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j #36	ENSGT00940000165049
Guinea pig	MODERN SPECIES	6	ENSCPOG00000035490	ENSCPOG00000007441	MEDAG (ENSCPOG00000003921)	ALOX5AP (ENSCPOG00000032690)	USPL1 (ENSCPOG00000009937)	HMGB1 (ENSCPOG00000031835)	KATNAL1 (ENSCPOG00000000804) #8	UBL3 (ENSCPOG00000036242) #9	SLC7A1 (ENSCPOG00000005590) #11	ENSCPOG00000005581 #12	SLC46A3 (ENSCPOG00000015460) #13	POMP (ENSCPOG00000001710) #14	FLT1 (ENSCPOG00000013357) #17	PAN3 (ENSCPOG00000013349) #18	FLT3 (ENSCPOG00000007285) #20	CDX2 (ENSCPOG00000007276) #22	PDX1 (ENSCPOG00000024534) #24	ENSCPOG00000026854	ENSCPOG00000033461 #26	LNX2 (ENSCPOG00000010152) #27	MTIF3 (ENSCPOG00000010148) #28	GTF3A (ENSCPOG00000010143) #29	RASL11A (ENSCPOG00000031264) #30	ENSCPOG00000008784 #31	USP12 (ENSCPOG00000005241) #32	ENSCPOG00000020112	WASF3 (ENSCPOG00000010156) #34	CDK8 (ENSCPOG00000040435) #35	RNF6 (ENSCPOG00000009120) #36	SHISA2 (ENSCPOG00000009049) #37	ATP8A2 (ENSCPOG00000032003)
Hystricomorpha_b	ANCESTRAL SPECIES	48	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.p #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647.c #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b ##31	ENSGT00940000153284.a.h #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530.j #36	ENSGT00940000165049
Degu	MODERN SPECIES	79	ENSODEG00000006120	KATNAL1 (ENSODEG00000005926) #8	UBL3 (ENSODEG00000005571) #9	ENSODEG00000005438	SLC7A1 (ENSODEG00000005306) #11	ENSODEG00000005871 #12	ENSODEG00000006635	SLC46A3 (ENSODEG00000006238) #13	ENSODEG00000005569	ENSODEG00000005111 #14	ENSODEG00000006274 #17	ENSODEG00000006016	PAN3 (ENSODEG00000005038) #18	FLT3 (ENSODEG00000007884) #20	ENSODEG00000007620	CDX2 (ENSODEG00000007340) #22	PDX1 (ENSODEG00000005235) #24	ENSODEG00000019134	GSX1 (ENSODEG00000005135) #25	ENSODEG00000006454	ENSODEG00000005294	LNX2 (ENSODEG00000006222) #27	MTIF3 (ENSODEG00000006818) #28	GTF3A (ENSODEG00000006725) #29	RASL11A (ENSODEG00000005775) #30	ENSODEG00000005022 ##31	USP12 (ENSODEG00000006744) #32	GPR12 (ENSODEG00000006388) #33	WASF3 (ENSODEG00000005353) #34	ENSODEG00000005140	ENSODEG00000006456 #35
Long-tailed chinchilla	MODERN SPECIES	204											SLC46A3 (ENSCLAG00000009379) #13	POMP (ENSCLAG00000008609) #14	FLT1 (ENSCLAG00000008187) #17	PAN3 (ENSCLAG00000007575) #18	FLT3 (ENSCLAG00000007093) #20	CDX2 (ENSCLAG00000006810) #22	PDX1 (ENSCLAG00000006652) #24	GSX1 (ENSCLAG00000004357) #25	ENSCLAG00000004320 #26	POLR1D (ENSCLAG00000017623)	LNX2 (ENSCLAG00000004148) #27	MTIF3 (ENSCLAG00000004080) #28	GTF3A (ENSCLAG00000003912) #29	RASL11A (ENSCLAG00000003867) #30	Rpl21 (ENSCLAG00000003656) ##31	USP12 (ENSCLAG00000003543) #32	GPR12 (ENSCLAG00000003409) #33	WASF3 (ENSCLAG00000003372) #34	CDK8 (ENSCLAG00000003311) #35	RNF6 (ENSCLAG00000003242) #36	ENSCLAG00000003030
Laurasiatheria	ANCESTRAL SPECIES	20	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00950000182922.a.a.b ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000161261 #22
Hedgehog	MODERN SPECIES	5979																CDX2 (ENSEEUG00000005045) #22
Laurasiatheria_a	ANCESTRAL SPECIES	21	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Artiodactyla	ANCESTRAL SPECIES	21	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Suina	ANCESTRAL SPECIES	29	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b ##31	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Pig	MODERN SPECIES	2	TEX26 (ENSSSCG00000046261)	MEDAG (ENSSSCG00000009331)	ALOX5AP (ENSSSCG00000009330)	USPL1 (ENSSSCG00000028065)	ENSSSCG00000009327	KATNAL1 (ENSSSCG00000009326) #8	ENSSSCG00000035992 #9	SLC7A1 (ENSSSCG00000029456) #11	MTUS2 (ENSSSCG00000025996) #12	SLC46A3 (ENSSSCG00000009322) #13	POMP (ENSSSCG00000037170) #14	FLT1 (ENSSSCG00000009320) #17	PAN3 (ENSSSCG00000009319) #18	FLT3 (ENSSSCG00000009314) #20	ENSSSCG00000009316	CDX2 (ENSSSCG00000009317) #22	PDX1 (ENSSSCG00000055811) #24	GSX1 (ENSSSCG00000009313) #25	POLR1D (ENSSSCG00000009310)	LNX2 (ENSSSCG00000009308) #27	MTIF3 (ENSSSCG00000037313) #28	GTF3A (ENSSSCG00000009305) #29	RASL11A (ENSSSCG00000039890) #30	ENSSSCG00000009303 ##31	USP12 (ENSSSCG00000009302) #32	GPR12 (ENSSSCG00000009301) #33	ENSSSCG00000042074	WASF3 (ENSSSCG00000009300) #34	CDK8 (ENSSSCG00000009298) #35	RNF6 (ENSSSCG00000024064) #36	ENSSSCG00000023771
Chacoan peccary	MODERN SPECIES	216	MEDAG (ENSCWAG00000017233)	ALOX5AP (ENSCWAG00000017261)	USPL1 (ENSCWAG00000017300)	HMGB1 (ENSCWAG00000017323)	KATNAL1 (ENSCWAG00000017366) #8	UBL3 (ENSCWAG00000017400) #9	SLC7A1 (ENSCWAG00000017449) #11	MTUS2 (ENSCWAG00000017501) #12	SLC46A3 (ENSCWAG00000017732) #13	POMP (ENSCWAG00000017771) #14	ENSCWAG00000017809	FLT1 (ENSCWAG00000017867) #17	PAN3 (ENSCWAG00000018033) #18	FLT3 (ENSCWAG00000018108) #20	URAD (ENSCWAG00000018244) #21	CDX2 (ENSCWAG00000018265) #22	PDX1 (ENSCWAG00000018319) #24	GSX1 (ENSCWAG00000018331) #25	POLR1D (ENSCWAG00000018355)	LNX2 (ENSCWAG00000018415) #27	MTIF3 (ENSCWAG00000018433) #28	GTF3A (ENSCWAG00000018454) #29	ENSCWAG00000018472	RASL11A (ENSCWAG00000018481) #30	RPL21 (ENSCWAG00000018513) #31	USP12 (ENSCWAG00000018548) #32	ENSCWAG00000018581	GPR12 (ENSCWAG00000018600) #33	WASF3 (ENSCWAG00000018614) #34	CDK8 (ENSCWAG00000018646) #35	ENSCWAG00000018769
Artiodactyla_a	ANCESTRAL SPECIES	22	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Camelidae	ANCESTRAL SPECIES	14	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00390000003643 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37
Arabian camel	MODERN SPECIES	5	MEDAG (ENSCDRG00005005141)	ALOX5AP (ENSCDRG00005005116)	USPL1 (ENSCDRG00005005085)	HMGB1 (ENSCDRG00005005045)	KATNAL1 (ENSCDRG00005005025) #8	UBL3 (ENSCDRG00005005011) #9	SLC7A1 (ENSCDRG00005004941) #11	ENSCDRG00005004898 #12	ENSCDRG00005004864 #12	SLC46A3 (ENSCDRG00005004813) #13	POMP (ENSCDRG00005004772) #14	FLT1 (ENSCDRG00005003978) #17	PAN3 (ENSCDRG00005003669) #18	FLT3 (ENSCDRG00005003607) #20	ENSCDRG00005003574	ENSCDRG00005003530 #22	PDX1 (ENSCDRG00005003496) #24	GSX1 (ENSCDRG00005003464) #25	POLR1D (ENSCDRG00005003401)	LNX2 (ENSCDRG00005003360) #27	MTIF3 (ENSCDRG00005003341) #28	GTF3A (ENSCDRG00005021807) #29	RASL11A (ENSCDRG00005021802) #30	ENSCDRG00005021795 ##31	USP12 (ENSCDRG00005021790) #32	GPR12 (ENSCDRG00005021787) #33	WASF3 (ENSCDRG00005021785) #34	CDK8 (ENSCDRG00005021779) #35	RNF6 (ENSCDRG00005021774) #36	SHISA2 (ENSCDRG00005021770) #37	ENSCDRG00005021765
Artiodactyla_b	ANCESTRAL SPECIES	22	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Cetacea	ANCESTRAL SPECIES	20	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00510000047760.j	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37
Odontoceti	ANCESTRAL SPECIES	21	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00510000047760.j	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b.i #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37
Odontoceti_a	ANCESTRAL SPECIES	24	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B.r #12	ENSGT00510000047760.j	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b.i #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37
Odontoceti_b	ANCESTRAL SPECIES	21	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B.r #12	ENSGT00510000047760.j	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b.i #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37
Monodontidae	ANCESTRAL SPECIES	15	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B.r #12	ENSGT00510000047760.j	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b.i #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37
Beluga whale	MODERN SPECIES	29	MEDAG (ENSDLEG00000005244)	ALOX5AP (ENSDLEG00000005233)	USPL1 (ENSDLEG00000005228)	HMGB1 (ENSDLEG00000005222)	KATNAL1 (ENSDLEG00000015700) #8	UBL3 (ENSDLEG00000015684) #9	SLC7A1 (ENSDLEG00000015661) #11	MTUS2 (ENSDLEG00000015621) #12	ENSDLEG00000015614	SLC46A3 (ENSDLEG00000015606) #13	ENSDLEG00000015594 #14	FLT1 (ENSDLEG00000015551) #17	PAN3 (ENSDLEG00000015462) #18	FLT3 (ENSDLEG00000014957) #20	ENSDLEG00000014887	CDX2 (ENSDLEG00000014871) #22	PDX1 (ENSDLEG00000014860) #24	GSX1 (ENSDLEG00000014854) #25	ENSDLEG00000014844 #26	POLR1D (ENSDLEG00000014833)	LNX2 (ENSDLEG00000014818) #27	MTIF3 (ENSDLEG00000014809) #28	GTF3A (ENSDLEG00000014795) #29	RASL11A (ENSDLEG00000014782) #30	RPL21 (ENSDLEG00000014757) ##31	USP12 (ENSDLEG00000014742) #32	GPR12 (ENSDLEG00000014734) #33	WASF3 (ENSDLEG00000014723) #34	CDK8 (ENSDLEG00000014684) #35	RNF6 (ENSDLEG00000014673) #36	SHISA2 (ENSDLEG00000014665) #37
Narwhal	MODERN SPECIES	315	HSPH1 (ENSMMNG00015020078)	MEDAG (ENSMMNG00015020156)	ALOX5AP (ENSMMNG00015020175)	USPL1 (ENSMMNG00015020212)	HMGB1 (ENSMMNG00015020245)	KATNAL1 (ENSMMNG00015020263) #8	UBL3 (ENSMMNG00015020289) #9	SLC7A1 (ENSMMNG00015020307) #11	MTUS2 (ENSMMNG00015020336) #12	SLC46A3 (ENSMMNG00015020455) #13	ENSMMNG00015020477 #14	FLT1 (ENSMMNG00015020525) #17	PAN3 (ENSMMNG00015020615) #18	FLT3 (ENSMMNG00015020792) #20	URAD (ENSMMNG00015020821) #21	CDX2 (ENSMMNG00015020842) #22	PDX1 (ENSMMNG00015020863) #24	GSX1 (ENSMMNG00015020877) #25	ENSMMNG00015020896 #26	LNX2 (ENSMMNG00015020919) #27	MTIF3 (ENSMMNG00015020934) #28	GTF3A (ENSMMNG00015020949) #29	ENSMMNG00015020968	RASL11A (ENSMMNG00015020985) #30	ENSMMNG00015020992 ##31	USP12 (ENSMMNG00015021025) #32	GPR12 (ENSMMNG00015021041) #33	WASF3 (ENSMMNG00015021063) #34	CDK8 (ENSMMNG00015021096) #35	RNF6 (ENSMMNG00015021148) #36	SHISA2 (ENSMMNG00015021160) #37
Vaquita	MODERN SPECIES	9	ALOX5AP (ENSPSNG00000012197)	USPL1 (ENSPSNG00000012125)	HMGB1 (ENSPSNG00000012042)	KATNAL1 (ENSPSNG00000011976) #8	UBL3 (ENSPSNG00000011923) #9	SLC7A1 (ENSPSNG00000011868) #11	ENSPSNG00000011712 #12	ENSPSNG00000011610	SLC46A3 (ENSPSNG00000011519) #13	ENSPSNG00000011451 #14	ENSPSNG00000011404	FLT1 (ENSPSNG00000010996) #17	PAN3 (ENSPSNG00000010591) #18	FLT3 (ENSPSNG00000009789) #20	URAD (ENSPSNG00000009637) #21	CDX2 (ENSPSNG00000009587) #22	PDX1 (ENSPSNG00000009545) #24	GSX1 (ENSPSNG00000009508) #25	ENSPSNG00000009434	LNX2 (ENSPSNG00000009360) #27	MTIF3 (ENSPSNG00000009318) #28	GTF3A (ENSPSNG00000009270) #29	RASL11A (ENSPSNG00000009220) #30	ENSPSNG00000009136 ##31	USP12 (ENSPSNG00000009102) #32	GPR12 (ENSPSNG00000009076) #33	ENSPSNG00000009063	WASF3 (ENSPSNG00000009017) #34	CDK8 (ENSPSNG00000008895) #35	RNF6 (ENSPSNG00000008824) #36	SHISA2 (ENSPSNG00000008758) #37
Sperm whale	MODERN SPECIES	4	MEDAG (ENSPCTG00005015216)	ALOX5AP (ENSPCTG00005015171)	USPL1 (ENSPCTG00005015111)	HMGB1 (ENSPCTG00005015034)	KATNAL1 (ENSPCTG00005014985) #8	UBL3 (ENSPCTG00005014919) #9	SLC7A1 (ENSPCTG00005014850) #11	MTUS2 (ENSPCTG00005014659) #12	ENSPCTG00005014618	SLC46A3 (ENSPCTG00005014585) #13	POMP (ENSPCTG00005014527) #14	FLT1 (ENSPCTG00005014294) #17	PAN3 (ENSPCTG00005014160) #18	FLT3 (ENSPCTG00005013790) #20	ENSPCTG00005013732	CDX2 (ENSPCTG00005013676) #22	PDX1 (ENSPCTG00005013620) #24	GSX1 (ENSPCTG00005013569) #25	POLR1D (ENSPCTG00005013390)	LNX2 (ENSPCTG00005013292) #27	MTIF3 (ENSPCTG00005013236) #28	GTF3A (ENSPCTG00005013180) #29	RASL11A (ENSPCTG00005013101) #30	RPL21 (ENSPCTG00005013013) ##31	USP12 (ENSPCTG00005012963) #32	ENSPCTG00005012908	GPR12 (ENSPCTG00005012894) #33	WASF3 (ENSPCTG00005012829) #34	CDK8 (ENSPCTG00005012757) #35	RNF6 (ENSPCTG00005012717) #36	SHISA2 (ENSPCTG00005012685) #37
Blue whale	MODERN SPECIES	9	MEDAG (ENSBMSG00010015612)	ALOX5AP (ENSBMSG00010015580)	USPL1 (ENSBMSG00010015554)	HMGB1 (ENSBMSG00010015522)	KATNAL1 (ENSBMSG00010015496) #8	UBL3 (ENSBMSG00010015451) #9	SLC7A1 (ENSBMSG00010015357) #11	ENSBMSG00010015247 #12	ENSBMSG00010015221	SLC46A3 (ENSBMSG00010015191) #13	ENSBMSG00010015155 #14	FLT1 (ENSBMSG00010014949) #17	PAN3 (ENSBMSG00010014764) #18	FLT3 (ENSBMSG00010014623) #20	URAD (ENSBMSG00010014592) #21	CDX2 (ENSBMSG00010014566) #22	PDX1 (ENSBMSG00010014538) #24	GSX1 (ENSBMSG00010014529) #25	ENSBMSG00010014466	LNX2 (ENSBMSG00010014414) #27	MTIF3 (ENSBMSG00010014375) #28	GTF3A (ENSBMSG00010014329) #29	ENSBMSG00010014311	RASL11A (ENSBMSG00010014298) #30	ENSBMSG00010014255 ##31	USP12 (ENSBMSG00010014225) #32	GPR12 (ENSBMSG00010014207) #33	WASF3 (ENSBMSG00010014112) #34	CDK8 (ENSBMSG00010014007) #35	RNF6 (ENSBMSG00010022445) #36	SHISA2 (ENSBMSG00010022444) #37
Pecora	ANCESTRAL SPECIES	23	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Percora_a	ANCESTRAL SPECIES	25	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Bovidae	ANCESTRAL SPECIES	25	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f.e.a.b ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Caprinae	ANCESTRAL SPECIES	28	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643.k #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424.g #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f.e.a.b ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Goat	MODERN SPECIES	3	TEX26 (ENSCHIG00000013376)	MEDAG (ENSCHIG00000019733)	ALOX5AP (ENSCHIG00000020532)	USPL1 (ENSCHIG00000025535)	HMGB1 (ENSCHIG00000018473)	KATNAL1 (ENSCHIG00000011417) #8	UBL3 (ENSCHIG00000005881) #9	SLC7A1 (ENSCHIG00000017131) #11	MTUS2 (ENSCHIG00000014951) #12	SLC46A3 (ENSCHIG00000006252) #13	ENSCHIG00000007021 #14	FLT1 (ENSCHIG00000019587) #17	PAN3 (ENSCHIG00000010876) #18	FLT3 (ENSCHIG00000006089) #20	ENSCHIG00000015696	CDX2 (ENSCHIG00000024755) #22	PDX1 (ENSCHIG00000016212) #24	GSX1 (ENSCHIG00000026107) #25	ENSCHIG00000014902 #26	POLR1D (ENSCHIG00000021910)	LNX2 (ENSCHIG00000024542) #27	ENSCHIG00000026996 #28	ENSCHIG00000021040 #29	RASL11A (ENSCHIG00000016902) #30	RPL21 (ENSCHIG00000021720) ##31	USP12 (ENSCHIG00000006817) #32	GPR12 (ENSCHIG00000007944) #33	WASF3 (ENSCHIG00000017657) #34	CDK8 (ENSCHIG00000006655) #35	RNF6 (ENSCHIG00000020161) #36	ENSCHIG00000018640
Rambouillet Sheep	MODERN SPECIES	1	ENSOARG00020008926	TEX26 (ENSOARG00020009149)	MEDAG (ENSOARG00020009224)	ALOX5AP (ENSOARG00020009284)	HMGB1 (ENSOARG00020009396)	KATNAL1 (ENSOARG00020009464) #8	UBL3 (ENSOARG00020009591) #9	SLC7A1 (ENSOARG00020009646) #11	ENSOARG00020009812 #12	SLC46A3 (ENSOARG00020009919) #13	ENSOARG00020010005 #14	FLT1 (ENSOARG00020010103) #17	PAN3 (ENSOARG00020010540) #18	FLT3 (ENSOARG00020011519) #20	URAD (ENSOARG00020011747) #21	CDX2 (ENSOARG00020011783) #22	PDX1 (ENSOARG00020011821) #24	GSX1 (ENSOARG00020011857) #25	POLR1D (ENSOARG00020011900)	LNX2 (ENSOARG00020012002) #27	MTIF3 (ENSOARG00020012058) #28	ENSOARG00020012106 #29	ENSOARG00020012160 #29	RASL11A (ENSOARG00020012287) #30	ENSOARG00020012335 ##31	ENSOARG00020012435 #35	USP12 (ENSOARG00020012488) #32	GPR12 (ENSOARG00020012619) #33	WASF3 (ENSOARG00020012645) #34	ENSOARG00020012817 #35	RNF6 (ENSOARG00020012931) #36
Bovinae	ANCESTRAL SPECIES	29	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f.e.a.a ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
American bison	MODERN SPECIES	3213										SLC46A3 (ENSBBBG00000012388) #13	POMP (ENSBBBG00000002357) #14	FLT1 (ENSBBBG00000012485) #17	PAN3 (ENSBBBG00000012554) #18	FLT3 (ENSBBBG00000012586) #20	URAD (ENSBBBG00000008107) #21	ENSBBBG00000012601 #22	PDX1 (ENSBBBG00000001839) #24	GSX1 (ENSBBBG00000001841) #25	ENSBBBG00000012613 #26	POLR1D (ENSBBBG00000012618)	LNX2 (ENSBBBG00000012639) #27	ENSBBBG00000012643 #28	GTF3A (ENSBBBG00000012669) #29	RASL11A (ENSBBBG00000007545) #30	ENSBBBG00000012692 ##31	USP12 (ENSBBBG00000002455) #32	GPR12 (ENSBBBG00000012732) #33	WASF3 (ENSBBBG00000002463) #34	CDK8 (ENSBBBG00000001797) #35	RNF6 (ENSBBBG00000012758) #36	ENSBBBG00000012975
Bos	ANCESTRAL SPECIES	28	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f.e.a.b ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Bos_b	ANCESTRAL SPECIES	33	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT01100000263481.n.a.b.b.a.b.b.a.a.b.a.b	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f.e.a.a ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Hybrid Bos Indicus	MODERN SPECIES	3	ALOX5AP (ENSBIXG00005000697)	USPL1 (ENSBIXG00005010560)	ENSBIXG00005010515	ENSBIXG00005006774	KATNAL1 (ENSBIXG00005000876) #8	ENSBIXG00005000793	UBL3 (ENSBIXG00005010348) #9	SLC7A1 (ENSBIXG00005006772) #11	MTUS2 (ENSBIXG00005010291) #12	SLC46A3 (ENSBIXG00005000810) #13	POMP (ENSBIXG00005010225) #14	FLT1 (ENSBIXG00005010159) #17	PAN3 (ENSBIXG00005005472) #18	FLT3 (ENSBIXG00005005466) #20	ENSBIXG00005000568	CDX2 (ENSBIXG00005000565) #22	PDX1 (ENSBIXG00005005368) #24	GSX1 (ENSBIXG00005009693) #25	POLR1D (ENSBIXG00005009666)	LNX2 (ENSBIXG00005009616) #27	ENSBIXG00005009581 #29	MTIF3 (ENSBIXG00005000533) #28	RASL11A (ENSBIXG00005009524) #30	ENSBIXG00005009506 ##31	USP12 (ENSBIXG00005000510) #32	GPR12 (ENSBIXG00005005366) #33	WASF3 (ENSBIXG00005009436) #34	CDK8 (ENSBIXG00005009401) #35	RNF6 (ENSBIXG00005009338) #36	ENSBIXG00005009305	ENSBIXG00005009251
Cow	MODERN SPECIES	3	TEX26 (ENSBTAG00000033386)	MEDAG (ENSBTAG00000008271)	ALOX5AP (ENSBTAG00000013201)	USPL1 (ENSBTAG00000001178)	HMGB1 (ENSBTAG00000018103)	KATNAL1 (ENSBTAG00000009340) #8	ENSBTAG00000052411	UBL3 (ENSBTAG00000012170) #9	SLC7A1 (ENSBTAG00000018577) #11	MTUS2 (ENSBTAG00000001094) #12	POMP (ENSBTAG00000014024) #14	FLT1 (ENSBTAG00000016915) #17	PAN3 (ENSBTAG00000009912) #18	FLT3 (ENSBTAG00000018572) #20	URAD (ENSBTAG00000013819)	CDX2 (ENSBTAG00000001819) #22	PDX1 (ENSBTAG00000010690) #24	GSX1 (ENSBTAG00000009166) #25	ENSBTAG00000048386 #26	POLR1D (ENSBTAG00000008642)	LNX2 (ENSBTAG00000015614) #27	MTIF3 (ENSBTAG00000020530) #28	GTF3A (ENSBTAG00000012600) #29	RASL11A (ENSBTAG00000005244) #30	RPL21 (ENSBTAG00000001648) ##31	USP12 (ENSBTAG00000017179) #32	GPR12 (ENSBTAG00000010769) #33	WASF3 (ENSBTAG00000014619) #34	ENSBTAG00000049013	CDK8 (ENSBTAG00000016737) #35	RNF6 (ENSBTAG00000005318) #36
Bos_a	ANCESTRAL SPECIES	19	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00390000003643 #26	ENSGT00940000154361.A #25	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f.e.a.b ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049	ENSGT00940000157443 #37
Domestic yak	MODERN SPECIES	6	ALOX5AP (ENSBGRG00000007328)	USPL1 (ENSBGRG00000007239)	ENSBGRG00000007221	ENSBGRG00000007092	KATNAL1 (ENSBGRG00000006924) #8	UBL3 (ENSBGRG00000006856) #9	SLC7A1 (ENSBGRG00000006751) #11	MTUS2 (ENSBGRG00000006670) #12	SLC46A3 (ENSBGRG00000006624) #13	POMP (ENSBGRG00000006553) #14	ENSBGRG00000006327 #17	ENSBGRG00000006167	PAN3 (ENSBGRG00000005813) #18	FLT3 (ENSBGRG00000005369) #20	ENSBGRG00000005297	CDX2 (ENSBGRG00000005271) #22	PDX1 (ENSBGRG00000005259) #24	ENSBGRG00000005252	ENSBGRG00000005241	GSX1 (ENSBGRG00000005224) #25	ENSBGRG00000005177 #26	LNX2 (ENSBGRG00000005122) #27	MTIF3 (ENSBGRG00000005098) #28	GTF3A (ENSBGRG00000004973) #29	RASL11A (ENSBGRG00000004923) #30	ENSBGRG00000004884 ##31	USP12 (ENSBGRG00000004775) #32	ENSBGRG00000004746	ENSBGRG00000004721	GPR12 (ENSBGRG00000004706) #33	WASF3 (ENSBGRG00000004578) #34
Wild yak	MODERN SPECIES	1372																ENSBMUG00000023200 #22	PDX1 (ENSBMUG00000023207) #24	ENSBMUG00000023232 #26
Siberian musk deer	MODERN SPECIES	18	TEX26 (ENSMMSG00000002369)	MEDAG (ENSMMSG00000002386)	ALOX5AP (ENSMMSG00000002405)	USPL1 (ENSMMSG00000002424)	ENSMMSG00000002453	KATNAL1 (ENSMMSG00000002485) #8	UBL3 (ENSMMSG00000002504) #9	SLC7A1 (ENSMMSG00000002527) #11	MTUS2 (ENSMMSG00000002573) #12	SLC46A3 (ENSMMSG00000002652) #13	ENSMMSG00000002681 #14	FLT1 (ENSMMSG00000002716) #17	PAN3 (ENSMMSG00000002825) #18	FLT3 (ENSMMSG00000002901) #20	URAD (ENSMMSG00000002960) #21	CDX2 (ENSMMSG00000002973) #22	PDX1 (ENSMMSG00000002992) #24	ENSMMSG00000003007	GSX1 (ENSMMSG00000003020) #25	POLR1D (ENSMMSG00000003040)	LNX2 (ENSMMSG00000003075) #27	MTIF3 (ENSMMSG00000003094) #28	ENSMMSG00000003107 #29	RASL11A (ENSMMSG00000003132) #30	ENSMMSG00000003141 ##31	USP12 (ENSMMSG00000003167) #32	GPR12 (ENSMMSG00000003186) #33	WASF3 (ENSMMSG00000003196) #34	CDK8 (ENSMMSG00000003210) #35	RNF6 (ENSMMSG00000003228) #36	ENSMMSG00000003239
Yarkand deer	MODERN SPECIES	23	ALOX5AP (ENSCHYG00000015250)	USPL1 (ENSCHYG00000015344)	ENSCHYG00000015436	KATNAL1 (ENSCHYG00000015536) #8	UBL3 (ENSCHYG00000015723) #9	SLC7A1 (ENSCHYG00000015804) #11	MTUS2 (ENSCHYG00000016049) #12	SLC46A3 (ENSCHYG00000016561) #13	ENSCHYG00000016630 #14	ENSCHYG00000016696	FLT1 (ENSCHYG00000016765) #17	PAN3 (ENSCHYG00000017249) #18	ENSCHYG00000017919 ##15	FLT3 (ENSCHYG00000017983) #20	URAD (ENSCHYG00000018294) #21	CDX2 (ENSCHYG00000018350) #22	PDX1 (ENSCHYG00000018394) #24	GSX1 (ENSCHYG00000018439) #25	ENSCHYG00000018475	ENSCHYG00000018627	LNX2 (ENSCHYG00000018648) #27	MTIF3 (ENSCHYG00000018756) #28	ENSCHYG00000018814 #29	RASL11A (ENSCHYG00000019009) #30	ENSCHYG00000019062 ##31	USP12 (ENSCHYG00000019156) #32	GPR12 (ENSCHYG00000019276) #33	WASF3 (ENSCHYG00000019331) #34	CDK8 (ENSCHYG00000019544) #35	RNF6 (ENSCHYG00000019809) #36	ENSCHYG00000019870
Laurasiatheria_b	ANCESTRAL SPECIES	21	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Carnivora	ANCESTRAL SPECIES	23	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Caniformia	ANCESTRAL SPECIES	24	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Canidae	ANCESTRAL SPECIES	31	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000153425.a.a.b.a	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.a.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00940000153229.A.b #21	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Canis_lupus	ANCESTRAL SPECIES	18	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000153425.a.a.b.a	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.a.b.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000011067.A.ib.b	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049	ENSGT00940000157443 #37
Dog	MODERN SPECIES	17	USPL1 (ENSCAFG00845021869)	HMGB1 (ENSCAFG00845021967)	KATNAL1 (ENSCAFG00845022093) #8	ENSCAFG00845022193	UBL3 (ENSCAFG00845022214) #9	ENSCAFG00845022280	SLC7A1 (ENSCAFG00845022314) #11	MTUS2 (ENSCAFG00845022435) #12	SLC46A3 (ENSCAFG00845022832) #13	POMP (ENSCAFG00845022887) #14	FLT1 (ENSCAFG00845023188) #17	PAN3 (ENSCAFG00845023866) #18	FLT3 (ENSCAFG00845024412) #20	ENSCAFG00845025235	ENSCAFG00845025288	CDX2 (ENSCAFG00845025357) #22	PDX1 (ENSCAFG00845025401) #24	GSX1 (ENSCAFG00845025440) #25	POLR1D (ENSCAFG00845025499) #26	LNX2 (ENSCAFG00845025569) #27	MTIF3 (ENSCAFG00845025671) #28	GTF3A (ENSCAFG00845025723) #29	RASL11A (ENSCAFG00845025821) #30	RPL21 (ENSCAFG00845025858) #31	USP12 (ENSCAFG00845025960) #32	ENSCAFG00845026031	GPR12 (ENSCAFG00845026068) #33	WASF3 (ENSCAFG00845026110) #34	CDK8 (ENSCAFG00845026285) #35	RNF6 (ENSCAFG00845026572) #36	ENSCAFG00845016412
Dingo	MODERN SPECIES	304	KATNAL1 (ENSCAFG00020025138) #8	ENSCAFG00020025145	UBL3 (ENSCAFG00020025147) #9	ENSCAFG00020025149	SLC7A1 (ENSCAFG00020025151) #11	MTUS2 (ENSCAFG00020025161) #12	SLC46A3 (ENSCAFG00020025168) #13	ENSCAFG00020025169	ENSCAFG00020025170	ENSCAFG00020025171 #17	ENSCAFG00020025175	PAN3 (ENSCAFG00020025181) #18	FLT3 (ENSCAFG00020025240) #20	ENSCAFG00020025290	ENSCAFG00020025291	CDX2 (ENSCAFG00020025296) #22	PDX1 (ENSCAFG00020025298) #24	GSX1 (ENSCAFG00020025299) #25	ENSCAFG00020025301	LNX2 (ENSCAFG00020025302) #27	MTIF3 (ENSCAFG00020025304) #28	ENSCAFG00020025306 #29	ENSCAFG00020025308 #29	ENSCAFG00020025311	RASL11A (ENSCAFG00020025312) #30	ENSCAFG00020025313 #31	USP12 (ENSCAFG00020025315) #32	GPR12 (ENSCAFG00020025316) #33	WASF3 (ENSCAFG00020025318) #34	CDK8 (ENSCAFG00020025319) #35	RNF6 (ENSCAFG00020025321) #36
Red fox	MODERN SPECIES	22	MEDAG (ENSVVUG00000009731)	ALOX5AP (ENSVVUG00000009718)	USPL1 (ENSVVUG00000009708)	HMGB1 (ENSVVUG00000009534)	KATNAL1 (ENSVVUG00000009499) #8	UBL3 (ENSVVUG00000009455) #9	ENSVVUG00000009450	SLC7A1 (ENSVVUG00000009439) #11	MTUS2 (ENSVVUG00000009413) #12	SLC46A3 (ENSVVUG00000009403) #13	POMP (ENSVVUG00000009398) #14	FLT1 (ENSVVUG00000009356) #17	PAN3 (ENSVVUG00000009313) #18	ENSVVUG00000009307 #21	FLT3 (ENSVVUG00000009247) #20	CDX2 (ENSVVUG00000009237) #22	PDX1 (ENSVVUG00000009234) #24	ENSVVUG00000009233	GSX1 (ENSVVUG00000009230) #25	ENSVVUG00000009220 #26	POLR1D (ENSVVUG00000009216)	LNX2 (ENSVVUG00000009209) #27	MTIF3 (ENSVVUG00000009207) #28	GTF3A (ENSVVUG00000009197) #29	RASL11A (ENSVVUG00000009191) #30	RPL21 (ENSVVUG00000009183) ##31	USP12 (ENSVVUG00000009179) #32	GPR12 (ENSVVUG00000009138) #33	WASF3 (ENSVVUG00000009124) #34	CDK8 (ENSVVUG00000009115) #35	RNF6 (ENSVVUG00000009109) #36
Caniformia_b	ANCESTRAL SPECIES	26	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Ursidae	ANCESTRAL SPECIES	27	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Giant Panda	MODERN SPECIES	17	ENSAMEG00000008833	TEX26 (ENSAMEG00000008839)	MEDAG (ENSAMEG00000008847)	ALOX5AP (ENSAMEG00000023710)	ENSAMEG00000008873	ENSAMEG00000008885 #8	UBL3 (ENSAMEG00000008894) #9	SLC7A1 (ENSAMEG00000008899) #11	MTUS2 (ENSAMEG00000008934) #12	SLC46A3 (ENSAMEG00000008953) #13	ENSAMEG00000008961 #14	FLT1 (ENSAMEG00000002209) #17	PAN3 (ENSAMEG00000002349) #18	FLT3 (ENSAMEG00000002354) #20	ENSAMEG00000031229	CDX2 (ENSAMEG00000029013) #22	PDX1 (ENSAMEG00000025378) #24	GSX1 (ENSAMEG00000030161) #25	ENSAMEG00000028974 #26	LNX2 (ENSAMEG00000015845) #27	MTIF3 (ENSAMEG00000015841) #28	GTF3A (ENSAMEG00000015824) #29	ENSAMEG00000029656	RASL11A (ENSAMEG00000015812) #30	RPL21 (ENSAMEG00000031074) ##31	USP12 (ENSAMEG00000001863) #32	ENSAMEG00000024690	GPR12 (ENSAMEG00000019402) #33	WASF3 (ENSAMEG00000001835) #34	CDK8 (ENSAMEG00000001794) #35	RNF6 (ENSAMEG00000001786) #36
Ursus	ANCESTRAL SPECIES	57	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
American black bear	MODERN SPECIES	663														FLT3 (ENSUAMG00000023222) #20	ENSUAMG00000023221	CDX2 (ENSUAMG00000023217) #22	PDX1 (ENSUAMG00000023216) #24	GSX1 (ENSUAMG00000023215) #25
Polar bear	MODERN SPECIES	177	TEX26 (ENSUMAG00000017213)	MEDAG (ENSUMAG00000017210)	ENSUMAG00000017201	USPL1 (ENSUMAG00000017198)	ENSUMAG00000017165	KATNAL1 (ENSUMAG00000017153) #8	UBL3 (ENSUMAG00000017145) #9	SLC7A1 (ENSUMAG00000017056) #11	ENSUMAG00000017046 #12	SLC46A3 (ENSUMAG00000017030) #13	POMP (ENSUMAG00000017026) #14	ENSUMAG00000017006 #17	ENSUMAG00000017000	PAN3 (ENSUMAG00000016986) #18	FLT3 (ENSUMAG00000016979) #20	ENSUMAG00000016976 #22	ENSUMAG00000016971 #26	POLR1D (ENSUMAG00000016968)	LNX2 (ENSUMAG00000016959) #27	MTIF3 (ENSUMAG00000016954) #28	GTF3A (ENSUMAG00000016941) #29	RASL11A (ENSUMAG00000016927) #30	ENSUMAG00000016908 ##31	ENSUMAG00000016903	ENSUMAG00000016901	USP12 (ENSUMAG00000016883) #32	GPR12 (ENSUMAG00000016877) #33	WASF3 (ENSUMAG00000016859) #34	CDK8 (ENSUMAG00000016849) #35	RNF6 (ENSUMAG00000016848) #36	ENSUMAG00000016800
Mustelinae	ANCESTRAL SPECIES	109	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26
American mink	MODERN SPECIES	346										S46A3 (ENSNVIG00000003179) #13	ENSNVIG00000003156 #14	FLT1 (ENSNVIG00000002982) #17	PAN3 (ENSNVIG00000002913) #18	FLT3 (ENSNVIG00000002880) #20	URAD (ENSNVIG00000002869) #21	CDX2 (ENSNVIG00000002864) #22	PDX1 (ENSNVIG00000002855) #24	GSX1 (ENSNVIG00000002846) #25	ENSNVIG00000002786 #26
Ferret	MODERN SPECIES	364	ALOX5AP (ENSMPUG00000004556)	USPL1 (ENSMPUG00000004564)	HMGB1 (ENSMPUG00000004579)	KATNAL1 (ENSMPUG00000004610) #8	ENSMPUG00000004620	UBL3 (ENSMPUG00000004638) #9	SLC7A1 (ENSMPUG00000004649) #11	MTUS2 (ENSMPUG00000004661) #12	ENSMPUG00000004676	SLC46A3 (ENSMPUG00000004680) #13	POMP (ENSMPUG00000004690) #14	FLT1 (ENSMPUG00000004699) #17	PAN3 (ENSMPUG00000004987) #18	FLT3 (ENSMPUG00000005073) #20	ENSMPUG00000005088	CDX2 (ENSMPUG00000005092) #22	PDX1 (ENSMPUG00000005147) #24	GSX1 (ENSMPUG00000005153) #25	ENSMPUG00000005164 #26
Felidae	ANCESTRAL SPECIES	23	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
Cat	MODERN SPECIES		TEX26 (ENSFCAG00000024146)	MEDAG (ENSFCAG00000007544)	ALOX5AP (ENSFCAG00000037195)	USPL1 (ENSFCAG00000022053)	HMGB1 (ENSFCAG00000000200)	KATNAL1 (ENSFCAG00000032001) #8	UBL3 (ENSFCAG00000027217) #9	SLC7A1 (ENSFCAG00000014326) #11	MTUS2 (ENSFCAG00000014322) #12	SLC46A3 (ENSFCAG00000008236) #13	POMP (ENSFCAG00000008235) #14	FLT1 (ENSFCAG00000013299) #17	PAN3 (ENSFCAG00000018643) #18	FLT3 (ENSFCAG00000004539) #20	ENSFCAG00000036126	CDX2 (ENSFCAG00000026699) #22	PDX1 (ENSFCAG00000034557) #24	GSX1 (ENSFCAG00000026793) #25	ENSFCAG00000030162 #26	LNX2 (ENSFCAG00000011821) #27	MTIF3 (ENSFCAG00000006985) #28	GTF3A (ENSFCAG00000006982) #29	RASL11A (ENSFCAG00000006749) #30	ENSFCAG00000006750 #31	USP12 (ENSFCAG00000026620) #32	GPR12 (ENSFCAG00000014524) #33	WASF3 (ENSFCAG00000009474) #34	CDK8 (ENSFCAG00000027073) #35	RNF6 (ENSFCAG00000011691) #36	ENSFCAG00000052429	SHISA2 (ENSFCAG00000043175) #37
Panthera	ANCESTRAL SPECIES	21	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b ##31	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36
Panthera_a	ANCESTRAL SPECIES	23	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b ##31	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104 #35	ENSGT00940000158530 #36	ENSGT00940000165049
lion	MODERN SPECIES	1	TEX26 (ENSPLOG00000019557)	MEDAG (ENSPLOG00000019748)	ALOX5AP (ENSPLOG00000019807)	USPL1 (ENSPLOG00000019841)	ENSPLOG00000019888	KATNAL1 (ENSPLOG00000019942) #8	UBL3 (ENSPLOG00000019992) #9	SLC7A1 (ENSPLOG00000020023) #11	ENSPLOG00000020066 #12	SLC46A3 (ENSPLOG00000020203) #13	POMP (ENSPLOG00000020240) #14	FLT1 (ENSPLOG00000020410) #17	PAN3 (ENSPLOG00000020895) #18	FLT3 (ENSPLOG00000021081) #20	URAD (ENSPLOG00000021175) #21	CDX2 (ENSPLOG00000021193) #22	PDX1 (ENSPLOG00000021216) #24	GSX1 (ENSPLOG00000021227) #25	ENSPLOG00000021249 #26	LNX2 (ENSPLOG00000021288) #27	MTIF3 (ENSPLOG00000021318) #28	GTF3A (ENSPLOG00000021339) #29	RASL11A (ENSPLOG00000021369) #30	ENSPLOG00000021394 ##31	USP12 (ENSPLOG00000004064) #32	GPR12 (ENSPLOG00000004075) #33	WASF3 (ENSPLOG00000004088) #34	CDK8 (ENSPLOG00000004108) #35	RNF6 (ENSPLOG00000004130) #36	ENSPLOG00000004137	SHISA2 (ENSPLOG00000004147) #37
leopard	MODERN SPECIES	14	MEDAG (ENSPPRG00000000734)	ALOX5AP (ENSPPRG00000000293)	USPL1 (ENSPPRG00000000053)	HMGB1 (ENSPPRG00000022869)	KATNAL1 (ENSPPRG00000022045) #8	UBL3 (ENSPPRG00000019662) #9	SLC7A1 (ENSPPRG00000017628) #11	ENSPPRG00000016401 #12	SLC46A3 (ENSPPRG00000015693) #13	POMP (ENSPPRG00000013840) #14	ENSPPRG00000013104 #17	ENSPPRG00000011363	PAN3 (ENSPPRG00000008505) #18	FLT3 (ENSPPRG00000005326) #20	ENSPPRG00000005097	CDX2 (ENSPPRG00000004823) #22	PDX1 (ENSPPRG00000004534) #24	GSX1 (ENSPPRG00000004333) #25	POLR1D (ENSPPRG00000003381)	LNX2 (ENSPPRG00000002783) #27	MTIF3 (ENSPPRG00000002497) #28	GTF3A (ENSPPRG00000002368) #29	RASL11A (ENSPPRG00000001350) #30	ENSPPRG00000001012 #31	USP12 (ENSPPRG00000000510) #32	GPR12 (ENSPPRG00000017596) #33	WASF3 (ENSPPRG00000022988) #34	CDK8 (ENSPPRG00000023432) #35	RNF6 (ENSPPRG00000024353) #36	ENSPPRG00000024460	ENSPPRG00000019469
Tiger	MODERN SPECIES	38	TEX26 (ENSPTIG00000017363)	MEDAG (ENSPTIG00000018319)	ALOX5AP (ENSPTIG00000019272)	USPL1 (ENSPTIG00000019771)	ENSPTIG00000020002	KATNAL1 (ENSPTIG00000020391) #8	UBL3 (ENSPTIG00000020762) #9	SLC7A1 (ENSPTIG00000021015) #11	ENSPTIG00000001385 #12	SLC46A3 (ENSPTIG00000005724) #13	POMP (ENSPTIG00000007181) #14	ENSPTIG00000007575 #17	ENSPTIG00000010147	PAN3 (ENSPTIG00000011675) #18	FLT3 (ENSPTIG00000013522) #20	ENSPTIG00000014998 #22	ENSPTIG00000016324	GSX1 (ENSPTIG00000016369) #25	ENSPTIG00000017320 #26	POLR1D (ENSPTIG00000018137)	LNX2 (ENSPTIG00000018500) #27	MTIF3 (ENSPTIG00000018642) #28	GTF3A (ENSPTIG00000018958) #29	RASL11A (ENSPTIG00000019926) #30	ENSPTIG00000020228 ##31	USP12 (ENSPTIG00000020368) #32	GPR12 (ENSPTIG00000005107) #33	WASF3 (ENSPTIG00000020649) #34	CDK8 (ENSPTIG00000021301) #35	RNF6 (ENSPTIG00000021628) #36	SHISA2 (ENSPTIG00000003520) #37
Laurasiatheria_c	ANCESTRAL SPECIES	22	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104.m.b #35	ENSGT00940000158530 #36	ENSGT00940000165049
Chiroptera	ANCESTRAL SPECIES	66	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104.m.a #35	ENSGT00940000157104.m.b #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37
Microchiroptera	ANCESTRAL SPECIES	46	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.f ##31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104.m.a #35	ENSGT00940000157104.m.b #35	ENSGT00940000158530 #36	ENSGT00940000157443 #37
Microbat	MODERN SPECIES	1164										SLC46A3 (ENSMLUG00000006699) #13	ENSMLUG00000010322 #14	FLT1 (ENSMLUG00000004358) #17	PAN3 (ENSMLUG00000004348) #18	FLT3 (ENSMLUG00000002582) #20	ENSMLUG00000002576	CDX2 (ENSMLUG00000002563) #22	PDX1 (ENSMLUG00000010639) #24	ENSMLUG00000025151 #26	LNX2 (ENSMLUG00000010946) #27	MTIF3 (ENSMLUG00000002161) #28	GTF3A (ENSMLUG00000002158) #29	RASL11A (ENSMLUG00000016335) #30	ENSMLUG00000010093 ##31	USP12 (ENSMLUG00000007510) #32	GPR12 (ENSMLUG00000002365) #33
Greater horseshoe bat	MODERN SPECIES	22	MEDAG (ENSRFEG00010000622)	ALOX5AP (ENSRFEG00010000601)	USPL1 (ENSRFEG00010000567)	HMGB1 (ENSRFEG00010000531)	KATNAL1 (ENSRFEG00010000476) #8	UBL3 (ENSRFEG00010000414) #9	SLC7A1 (ENSRFEG00010000293) #11	ENSRFEG00010004420	MTUS2 (ENSRFEG00010004361) #12	SLC46A3 (ENSRFEG00010004332) #13	ENSRFEG00010004318 #14	FLT1 (ENSRFEG00010004193) #17	PAN3 (ENSRFEG00010004077) #18	FLT3 (ENSRFEG00010004003) #20	ENSRFEG00010003975	CDX2 (ENSRFEG00010003965) #22	PDX1 (ENSRFEG00010003956) #24	GSX1 (ENSRFEG00010003946) #25	ENSRFEG00010003942	ENSRFEG00010003922	LNX2 (ENSRFEG00010003884) #27	MTIF3 (ENSRFEG00010003873) #28	GTF3A (ENSRFEG00010003845) #29	RASL11A (ENSRFEG00010003821) #30	ENSRFEG00010003789 #31	USP12 (ENSRFEG00010003775) #32	GPR12 (ENSRFEG00010003761) #33	ENSRFEG00010003754	WASF3 (ENSRFEG00010003718) #34	CDK8 (ENSRFEG00010003679) #35	RNF6 (ENSRFEG00010003644) #36
Megabat	MODERN SPECIES	906														FLT3 (ENSPVAG00000011525) #20	ENSPVAG00000011523	CDX2 (ENSPVAG00000011522) #22	PDX1 (ENSPVAG00000011521) #24
Equus	ANCESTRAL SPECIES	26	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a	ENSGT00940000156630 #8	ENSGT00390000004952.b #9	ENSGT00940000155349 #11	ENSGT00950000183026.B #12	ENSGT00950000183096.a.a.c.b #13	ENSGT00390000010734.j.b #14	ENSGT00940000158713 #17	ENSGT00940000164144	ENSGT00390000001504 #18	ENSGT00940000160575 #20	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542 #24	ENSGT00940000154361.A #25	ENSGT00390000003643 #26	ENSGT00550000075160	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b #31	ENSGT00940000153284.a #32	ENSGT01060000248564.b.a.b.a #33	ENSGT00950000182962.a.a #34	ENSGT00940000157104.m.b #35	ENSGT00940000158530 #36	ENSGT00940000165049
Donkey	MODERN SPECIES	29	ALOX5AP (ENSEASG00005022395)	USPL1 (ENSEASG00005022400)	HMGB1 (ENSEASG00005032345)	KATNAL1 (ENSEASG00005022416) #8	UBL3 (ENSEASG00005022423) #9	SLC7A1 (ENSEASG00005022432) #11	MTUS2 (ENSEASG00005022449) #12	SLC46A3 (ENSEASG00005022457) #13	ENSEASG00005029421 #14	ENSEASG00005022461 #17	ENSEASG00005029804	PAN3 (ENSEASG00005022467) #18	FLT3 (ENSEASG00005022471) #20	ENSEASG00005003450	ENSEASG00005028208	CDX2 (ENSEASG00005022479) #22	PDX1 (ENSEASG00005022482) #24	GSX1 (ENSEASG00005022483) #25	ENSEASG00005035501 #26	POLR1D (ENSEASG00005022487)	LNX2 (ENSEASG00005022490) #27	MTIF3 (ENSEASG00005022492) #28	ENSEASG00005022495 #29	RASL11A (ENSEASG00005034471) #30	ENSEASG00005022501 #31	USP12 (ENSEASG00005022511) #32	GPR12 (ENSEASG00005035884) #33	WASF3 (ENSEASG00005022517) #34	CDK8 (ENSEASG00005022522) #35	RNF6 (ENSEASG00005022526) #36	ENSEASG00005025996
Horse	MODERN SPECIES	8	ALOX5AP (ENSECAG00000012371)	USPL1 (ENSECAG00000011889)	HMGB1 (ENSECAG00000008439)	KATNAL1 (ENSECAG00000004830) #8	UBL3 (ENSECAG00000001318) #9	SLC7A1 (ENSECAG00000015413) #11	MTUS2 (ENSECAG00000013935) #12	SLC46A3 (ENSECAG00000011432) #13	ENSECAG00000048907	POMP (ENSECAG00000011951) #14	ENSECAG00000049171 #17	FLT1 (ENSECAG00000021700)	PAN3 (ENSECAG00000014810) #18	FLT3 (ENSECAG00000002171) #20	ENSECAG00000002049	CDX2 (ENSECAG00000027754) #22	PDX1 (ENSECAG00000000679) #24	GSX1 (ENSECAG00000035168) #25	ENSECAG00000021095 #26	LNX2 (ENSECAG00000017219) #27	MTIF3 (ENSECAG00000016697) #28	GTF3A (ENSECAG00000014803) #29	RASL11A (ENSECAG00000012858) #30	USP12 (ENSECAG00000006779) #32	ENSECAG00000045376	ENSECAG00000036907	GPR12 (ENSECAG00000059623) #33	WASF3 (ENSECAG00000000050) #34	CDK8 (ENSECAG00000015515) #35	RNF6 (ENSECAG00000013606) #36	SHISA2 (ENSECAG00000013207) #37