Euarchontoglires	ANCESTRAL SPECIES	21	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.a.n ##11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00390000003643	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000165049
Euarchontoglires_A	ANCESTRAL SPECIES	21	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.a.n ##11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00390000003643	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000165049
Glires	ANCESTRAL SPECIES	22	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.a.n ##11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00390000003643	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j #35	ENSGT00940000165049
Rodentia	ANCESTRAL SPECIES	22	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00390000003643	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j #35	ENSGT00940000165049
Rodentia_B	ANCESTRAL SPECIES	25	ENSGT00390000009484 #7	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b	ENSGT00950000182922.a.a.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j #35
Myomorpha	ANCESTRAL SPECIES	46	ENSGT00390000009484 #7	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j #35
Lesser Egyptian jerboa	MODERN SPECIES	73	Tex26 (ENSJJAG00000007098) #7	Medag (ENSJJAG00000017396) #8	Alox5ap (ENSJJAG00000004614) #9	ENSJJAG00000014544 #10	ENSJJAG00000000696 #11	Katnal1 (ENSJJAG00000011429) #12	Ubl3 (ENSJJAG00000016514) #13	Slc7a1 (ENSJJAG00000022034) #14	ENSJJAG00000008307 #15	Slc46a3 (ENSJJAG00000015117) #16	Pomp (ENSJJAG00000014017) #17	Flt1 (ENSJJAG00000009276) #18	Pan3 (ENSJJAG00000013560) #19	Flt3 (ENSJJAG00000004796) #20	Urad (ENSJJAG00000022682) #21	Cdx2 (ENSJJAG00000010229) #22	Pdx1 (ENSJJAG00000017468) #23	Gsx1 (ENSJJAG00000021574) #24	ENSJJAG00000009076 #25	ENSJJAG00000022671 #26	Lnx2 (ENSJJAG00000014998) #27	Mtif3 (ENSJJAG00000013006) #28	Gtf3a (ENSJJAG00000011501) #29	Rasl11a (ENSJJAG00000020910) #30	Usp12 (ENSJJAG00000019341) #31	Gpr12 (ENSJJAG00000012507) #32	Wasf3 (ENSJJAG00000018294) #33	Cdk8 (ENSJJAG00000009532) #34	Rnf6 (ENSJJAG00000023994) #35	Vstm2b (ENSJJAG00000022517) #36	Pop4 (ENSJJAG00000013376) #37
Muroidea	ANCESTRAL SPECIES	68	ENSGT00390000009484 #7	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j #35
Muroidea_A	ANCESTRAL SPECIES	27	ENSGT00390000009484 #7	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.d	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j #35	ENSGT00950000182958.a.b.b.j.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.a.a.b
Cricetidae	ANCESTRAL SPECIES	27	ENSGT00390000009484 #7	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.d	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j.a #35	ENSGT00950000182958.a.b.b.j.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.a.a.b
Cricetinae	ANCESTRAL SPECIES	19	ENSGT00940000162967	ENSGT00390000009484 #7	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.d	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j.a #35	ENSGT00950000182958.a.b.b.j.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.a.a.b.a
Golden Hamster	MODERN SPECIES	762	Medag (ENSMAUG00000009604) #8	Alox5ap (ENSMAUG00000012262) #9	ENSMAUG00000013736 #10	ENSMAUG00000017646	Katnal1 (ENSMAUG00000007731) #12	Ubl3 (ENSMAUG00000016399) #13	Slc7a1 (ENSMAUG00000000359) #14	ENSMAUG00000018323 #15	ENSMAUG00000020285	Pomp (ENSMAUG00000006509) #17	Flt1 (ENSMAUG00000006859) #18	Pan3 (ENSMAUG00000021155) #19	Flt3 (ENSMAUG00000011952) #20	ENSMAUG00000001106	Urad (ENSMAUG00000019946) #21	Cdx2 (ENSMAUG00000020822) #22	Pdx1 (ENSMAUG00000021082) #23	Polr1d (ENSMAUG00000001946) #26	Lnx2 (ENSMAUG00000009457) #27	Mtif3 (ENSMAUG00000011167) #28	Gtf3a (ENSMAUG00000016253) #29	Rasl11a (ENSMAUG00000019356) #30	ENSMAUG00000006957	Usp12 (ENSMAUG00000010310) #31	ENSMAUG00000010877	Gpr12 (ENSMAUG00000015064) #32	Rfc3 (ENSMAUG00000016464)
Chinese hamster chok1gshd	MODERN SPECIES	130	ENSCGRG00001025063	Alox5ap (ENSCGRG00001018470) #9	ENSCGRG00001018342 #10	Katnal1 (ENSCGRG00001024027) #12	Ubl3 (ENSCGRG00001002093) #13	Slc7a1 (ENSCGRG00001019393) #14	Mtus2 (ENSCGRG00001023648) #15	ENSCGRG00001001206	Slc46a3 (ENSCGRG00001023870) #16	Pomp (ENSCGRG00001000803) #17	Flt1 (ENSCGRG00001000764) #18	Pan3 (ENSCGRG00001024986) #19	ENSCGRG00001012489	Flt3 (ENSCGRG00001010328) #20	Urad (ENSCGRG00001021146) #21	Cdx2 (ENSCGRG00001024259) #22	Pdx1 (ENSCGRG00001024891) #23	Gsx1 (ENSCGRG00001017641) #24	Polr1d (ENSCGRG00001021251) #26	Lnx2 (ENSCGRG00001022751) #27	ENSCGRG00001024532	Mtif3 (ENSCGRG00001024612) #28	Gtf3a (ENSCGRG00001024969) #29	Rasl11a (ENSCGRG00001014752) #30	Rpl21 (ENSCGRG00001007602)	ENSCGRG00001021742 #31	Gpr12 (ENSCGRG00001003285) #32	Wasf3 (ENSCGRG00001003303) #33	Cdk8 (ENSCGRG00001010747) #34	Rnf6 (ENSCGRG00001010459) #35	ENSCGRG00001020483
Cricetidae_B	ANCESTRAL SPECIES	49	ENSGT00390000009484 #7	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.d	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j.a #35	ENSGT00940000162113	ENSGT00950000182958.a.b.b.j.a.a.a.b
Prairie vole	MODERN SPECIES	7	Medag (ENSMOCG00000012447) #8	Alox5ap (ENSMOCG00000018258) #9	ENSMOCG00000018612 #10	ENSMOCG00000018161 ##11	Katnal1 (ENSMOCG00000013914) #12	Ubl3 (ENSMOCG00000012896) #13	Slc7a1 (ENSMOCG00000022298) #14	Mtus2 (ENSMOCG00000013900) #15	Slc46a3 (ENSMOCG00000007090) #16	Pomp (ENSMOCG00000006131) #17	ENSMOCG00000000648	Flt1 (ENSMOCG00000019790) #18	Pan3 (ENSMOCG00000001443) #19	Flt3 (ENSMOCG00000015945) #20	Urad (ENSMOCG00000018154) #21	Cdx2 (ENSMOCG00000010222) #22	Pdx1 (ENSMOCG00000007886) #23	Gsx1 (ENSMOCG00000002374) #24	Polr1d (ENSMOCG00000021288) #26	Lnx2 (ENSMOCG00000022088) #27	Mtif3 (ENSMOCG00000017226) #28	Gtf3a (ENSMOCG00000004408) #29	ENSMOCG00000017124	Rasl11a (ENSMOCG00000000626) #30	Rpl21 (ENSMOCG00000003487)	Usp12 (ENSMOCG00000001714) #31	Gpr12 (ENSMOCG00000009890) #32	ENSMOCG00000017944	Rnf6 (ENSMOCG00000006180) #35	ENSMOCG00000021837 #34	ENSMOCG00000014918
Northern American deer mouse	MODERN SPECIES	15	Medag (ENSPEMG00000000331) #8	Alox5ap (ENSPEMG00000000576) #9	Uspl1 (ENSPEMG00000003660) #10	ENSPEMG00000000834 #11	Katnal1 (ENSPEMG00000009164) #12	Ubl3 (ENSPEMG00000010779) #13	Slc7a1 (ENSPEMG00000006808) #14	Mtus2 (ENSPEMG00000011863) #15	ENSPEMG00000024696	Slc46a3 (ENSPEMG00000014019) #16	ENSPEMG00000014341 #17	Flt1 (ENSPEMG00000019000) #18	Pan3 (ENSPEMG00000008992) #19	Flt3 (ENSPEMG00000012278) #20	Urad (ENSPEMG00000025423) #21	Cdx2 (ENSPEMG00000000632) #22	Pdx1 (ENSPEMG00000001176) #23	Gsx1 (ENSPEMG00000004992) #24	Polr1d (ENSPEMG00000006336) #26	Lnx2 (ENSPEMG00000008280) #27	Mtif3 (ENSPEMG00000000930) #28	Gtf3a (ENSPEMG00000003201) #29	Rasl11a (ENSPEMG00000004475) #30	Rpl21 (ENSPEMG00000006041)	Usp12 (ENSPEMG00000008193) #31	Gpr12 (ENSPEMG00000010665) #32	ENSPEMG00000030961	Wasf3 (ENSPEMG00000011510) #33	Cdk8 (ENSPEMG00000012706) #34	ENSPEMG00000015454 #35	ENSPEMG00000027927
Murinae	ANCESTRAL SPECIES	28	ENSGT00390000018451 #8	ENSGT00960000191336	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.c.c.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j #35	ENSGT00950000182958.a.b.b.j.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.a.a.b
Mus	ANCESTRAL SPECIES	17	ENSGT00390000018451 #8	ENSGT00960000191336	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.c.c.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j #35	ENSGT00950000182958.a.b.b.j.a.a.a.a.c	ENSGT00950000182958.a.b.b.j.a.a.a.b
Mus_A	ANCESTRAL SPECIES	6	ENSGT00390000018451 #8	ENSGT00960000191336	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.c.c.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j #35	ENSGT00950000182958.a.b.b.j.a.a.a.a.c	ENSGT00950000182958.a.b.b.j.a.a.a.b
Mus_B	ANCESTRAL SPECIES	4	ENSGT00390000018451 #8	ENSGT00960000191336	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.a.n ##11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.c.c.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j #35	ENSGT00950000182958.a.b.b.j.a.a.a.a.c.a.a	ENSGT00950000182958.a.b.b.j.a.a.a.b.i.b
Mouse	MODERN SPECIES	14	Tex26 (ENSMUSG00000029660) #7	Medag (ENSMUSG00000029659) #8	Alox5ap (ENSMUSG00000060063) #9	Uspl1 (ENSMUSG00000041264) #10	Hmgb1 (ENSMUSG00000066551) ##11	Katnal1 (ENSMUSG00000041298) #12	Ubl3 (ENSMUSG00000001687) #13	Slc7a1 (ENSMUSG00000041313) #14	Mtus2 (ENSMUSG00000029651) #15	Slc46a3 (ENSMUSG00000029650) #16	Pomp (ENSMUSG00000029649) #17	Flt1 (ENSMUSG00000029648) #18	Pan3 (ENSMUSG00000029647) #19	Flt3 (ENSMUSG00000042817) #20	Urad (ENSMUSG00000075543) #21	Cdx2 (ENSMUSG00000029646) #22	Pdx1 (ENSMUSG00000029644) #23	Gsx1 (ENSMUSG00000053129) #24	Polr1d (ENSMUSG00000029642) #26	Lnx2 (ENSMUSG00000016520) #27	Mtif3 (ENSMUSG00000016510) #28	Gtf3a (ENSMUSG00000016503) #29	Rasl11a (ENSMUSG00000029641) #30	Rpl21 (ENSMUSG00000041453)	Usp12 (ENSMUSG00000029640) #31	Gpr12 (ENSMUSG00000041468) #32	Gm3415 (ENSMUSG00000095557)	Gm3409 (ENSMUSG00000096664)	Gm3404 (ENSMUSG00000079091)	Gm3402 (ENSMUSG00000041505)	4930449I24Rik (ENSMUSG00000079093)
Mus_C	ANCESTRAL SPECIES	4	ENSGT00390000018451 #8	ENSGT00960000191336	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.a.n ##11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.b.c.c.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j #35	ENSGT00940000155423.e.b	ENSGT00940000162113
Steppe mouse	MODERN SPECIES	3364	Alox5ap (ENSMSIG00000023243) #9	Uspl1 (ENSMSIG00000023285) #10	ENSMSIG00000023332 ##11	Katnal1 (ENSMSIG00000023377) #12	Ubl3 (ENSMSIG00000023402) #13	Slc7a1 (ENSMSIG00000023421) #14	Mtus2 (ENSMSIG00000023484) #15	Slc46a3 (ENSMSIG00000023578) #16	Pomp (ENSMSIG00000023598) #17	ENSMSIG00000023628	Flt1 (ENSMSIG00000023642) #18	Pan3 (ENSMSIG00000023687) #19	Flt3 (ENSMSIG00000023851) #20	ENSMSIG00000023930	ENSMSIG00000023941	Cdx2 (ENSMSIG00000023947) #22	Pdx1 (ENSMSIG00000023956) #23	Gsx1 (ENSMSIG00000023969) #24	ENSMSIG00000023978 #26	Lnx2 (ENSMSIG00000023999) #27	Mtif3 (ENSMSIG00000024005) #28	Gtf3a (ENSMSIG00000024026) #29	Rasl11a (ENSMSIG00000024039) #30	ENSMSIG00000024049	Usp12 (ENSMSIG00000024096) #31	ENSMSIG00000024119	Gpr12 (ENSMSIG00000024129) #32	Wasf3 (ENSMSIG00000024134) #33	Cdk8 (ENSMSIG00000024179) #34	Rnf6 (ENSMSIG00000024340) #35	ENSMSIG00000024355
spretus	MODERN SPECIES	14	Medag (MGP_SPRETEiJ_G0029050) #8	Alox5ap (MGP_SPRETEiJ_G0029049) #9	Uspl1 (MGP_SPRETEiJ_G0029048) #10	MGP_SPRETEiJ_G0029047 #11	MGP_SPRETEiJ_G0029046 #12	MGP_SPRETEiJ_G0029045 #12	Ubl3 (MGP_SPRETEiJ_G0029044) #13	Slc7a1 (MGP_SPRETEiJ_G0029043) #14	Mtus2 (MGP_SPRETEiJ_G0029042) #15	Slc46a3 (MGP_SPRETEiJ_G0029041) #16	Pomp (MGP_SPRETEiJ_G0029040) #17	Flt1 (MGP_SPRETEiJ_G0029039) #18	Pan3 (MGP_SPRETEiJ_G0029038) #19	Flt3 (MGP_SPRETEiJ_G0029037) #20	Urad (MGP_SPRETEiJ_G0029036) #21	Cdx2 (MGP_SPRETEiJ_G0029035) #22	Pdx1 (MGP_SPRETEiJ_G0029034) #23	Gsx1 (MGP_SPRETEiJ_G0029033) #24	Polr1d (MGP_SPRETEiJ_G0029032) #26	Lnx2 (MGP_SPRETEiJ_G0029031) #27	Mtif3 (MGP_SPRETEiJ_G0029030) #28	Gtf3a (MGP_SPRETEiJ_G0029029) #29	Rasl11a (MGP_SPRETEiJ_G0029028) #30	MGP_SPRETEiJ_G0029027	Usp12 (MGP_SPRETEiJ_G0029026) #31	Gpr12 (MGP_SPRETEiJ_G0029025) #32	Wasf3 (MGP_SPRETEiJ_G0029024) #33	Cdk8 (MGP_SPRETEiJ_G0029023) #34	Rnf6 (MGP_SPRETEiJ_G0029022) #35	MGP_SPRETEiJ_G0029021	MGP_SPRETEiJ_G0029020
Ryukyu mouse	MODERN SPECIES	14	Medag (MGP_CAROLIEiJ_G0028052) #8	MGP_CAROLIEiJ_G0028051 #9	Uspl1 (MGP_CAROLIEiJ_G0028050) #10	MGP_CAROLIEiJ_G0028049 #11	MGP_CAROLIEiJ_G0028048 #12	MGP_CAROLIEiJ_G0028047 #12	Ubl3 (MGP_CAROLIEiJ_G0028046) #13	Slc7a1 (MGP_CAROLIEiJ_G0028045) #14	Mtus2 (MGP_CAROLIEiJ_G0028044) #15	Slc46a3 (MGP_CAROLIEiJ_G0028043) #16	Pomp (MGP_CAROLIEiJ_G0028042) #17	Flt1 (MGP_CAROLIEiJ_G0028041) #18	Pan3 (MGP_CAROLIEiJ_G0028040) #19	Flt3 (MGP_CAROLIEiJ_G0028039) #20	Urad (MGP_CAROLIEiJ_G0028038) #21	Cdx2 (MGP_CAROLIEiJ_G0028037) #22	Pdx1 (MGP_CAROLIEiJ_G0028036) #23	Gsx1 (MGP_CAROLIEiJ_G0028035) #24	Polr1d (MGP_CAROLIEiJ_G0028034) #26	Lnx2 (MGP_CAROLIEiJ_G0028033) #27	Mtif3 (MGP_CAROLIEiJ_G0028032) #28	Gtf3a (MGP_CAROLIEiJ_G0028031) #29	Rasl11a (MGP_CAROLIEiJ_G0028030) #30	Rpl21 (MGP_CAROLIEiJ_G0028029)	Usp12 (MGP_CAROLIEiJ_G0028028) #31	Gpr12 (MGP_CAROLIEiJ_G0028027) #32	Wasf3 (MGP_CAROLIEiJ_G0028026) #33	Cdk8 (MGP_CAROLIEiJ_G0028025) #34	Rnf6 (MGP_CAROLIEiJ_G0028024) #35	MGP_CAROLIEiJ_G0028023	MGP_CAROLIEiJ_G0028021
Shrew mouse	MODERN SPECIES	15	Medag (MGP_PahariEiJ_G0024618) #8	Alox5ap (MGP_PahariEiJ_G0024617) #9	Uspl1 (MGP_PahariEiJ_G0024616) #10	MGP_PahariEiJ_G0024615 #11	MGP_PahariEiJ_G0024614 #12	MGP_PahariEiJ_G0024613 #12	Ubl3 (MGP_PahariEiJ_G0024612) #13	Slc7a1 (MGP_PahariEiJ_G0024611) #14	Mtus2 (MGP_PahariEiJ_G0024610) #15	Slc46a3 (MGP_PahariEiJ_G0024609) #16	MGP_PahariEiJ_G0024608	Flt1 (MGP_PahariEiJ_G0024607) #18	Pan3 (MGP_PahariEiJ_G0024606) #19	Flt3 (MGP_PahariEiJ_G0024605) #20	Urad (MGP_PahariEiJ_G0024604) #21	Cdx2 (MGP_PahariEiJ_G0024603) #22	Pdx1 (MGP_PahariEiJ_G0024602) #23	Gsx1 (MGP_PahariEiJ_G0024601) #24	Polr1d (MGP_PahariEiJ_G0024600) #26	Lnx2 (MGP_PahariEiJ_G0024599) #27	Mtif3 (MGP_PahariEiJ_G0024598) #28	Gtf3a (MGP_PahariEiJ_G0024597) #29	Rasl11a (MGP_PahariEiJ_G0024596) #30	MGP_PahariEiJ_G0024595	Usp12 (MGP_PahariEiJ_G0024594) #31	Gpr12 (MGP_PahariEiJ_G0024593) #32	Wasf3 (MGP_PahariEiJ_G0024592) #33	Cdk8 (MGP_PahariEiJ_G0024591) #34	Rnf6 (MGP_PahariEiJ_G0024590) #35	MGP_PahariEiJ_G0024588	MGP_PahariEiJ_G0024589
Rat	MODERN SPECIES	3	Medag (ENSRNOG00000000906) #8	AABR07035203.1 (ENSRNOG00000060198)	Alox5ap (ENSRNOG00000000907) #9	Uspl1 (ENSRNOG00000000909) #10	AABR07035218.1 (ENSRNOG00000029813) ##11	Rpl35a-ps6 (ENSRNOG00000069961)	Katnal1 (ENSRNOG00000047618) #12	Slc7a1 (ENSRNOG00000000924) #14	Mtus2 (ENSRNOG00000032410) #15	Slc46a3 (ENSRNOG00000000937) #16	Pomp (ENSRNOG00000049229) ##17	Flt1 (ENSRNOG00000000940) #18	Pan3 (ENSRNOG00000000942) #19	Flt3 (ENSRNOG00000054764) #20	Urad (ENSRNOG00000050360) #21	Cdx2 (ENSRNOG00000032759) #22	Pdx1 (ENSRNOG00000046458) #23	Gsx1 (ENSRNOG00000000952) #24	Polr1d (ENSRNOG00000000954) #26	Lnx2 (ENSRNOG00000000955) #27	Mtif3 (ENSRNOG00000070811) #28	Gtf3a (ENSRNOG00000050016) #29	Rasl11a (ENSRNOG00000000956) #30	Rpl21 (ENSRNOG00000000957)	Usp12 (ENSRNOG00000033411) #31	Gpr12 (ENSRNOG00000039832) #32	Wasf3 (ENSRNOG00000048898) #33	LOC120095889 (ENSRNOG00000050264)	LOC684427 (ENSRNOG00000069792)	AABR07035338.1 (ENSRNOG00000039819) #34	Rnf6 (ENSRNOG00000000968) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1878	Medag (ENSNGAG00000021713) #8	Alox5ap (ENSNGAG00000010455) #9	Uspl1 (ENSNGAG00000021450) #10	ENSNGAG00000020735 ##11	Katnal1 (ENSNGAG00000018344) #12	Ubl3 (ENSNGAG00000021531) #13	Slc7a1 (ENSNGAG00000011095) #14	ENSNGAG00000023043 #15	ENSNGAG00000011243 ##15	ENSNGAG00000022087	Slc46a3 (ENSNGAG00000023221) #16	ENSNGAG00000019389 #17	Flt1 (ENSNGAG00000022615) #18	Pan3 (ENSNGAG00000005671) #19	Flt3 (ENSNGAG00000022203) #20	Cdx2 (ENSNGAG00000019299) #22	Pdx1 (ENSNGAG00000024275) #23	ENSNGAG00000011527	Gsx1 (ENSNGAG00000013964) #24	ENSNGAG00000020643	ENSNGAG00000019459 #25	Polr1d (ENSNGAG00000006014) #26	Lnx2 (ENSNGAG00000010972) #27	Mtif3 (ENSNGAG00000022911) #28	Gtf3a (ENSNGAG00000023691) #29	Rasl11a (ENSNGAG00000021721) #30	ENSNGAG00000022375	ENSNGAG00000012493	Usp12 (ENSNGAG00000023867) #31	ENSNGAG00000011492
Kangaroo rat	MODERN SPECIES	421	Medag (ENSDORG00000008557) #8	Alox5ap (ENSDORG00000006041) #9	Uspl1 (ENSDORG00000007790) #10	ENSDORG00000027930 #11	Katnal1 (ENSDORG00000012794) #12	Ubl3 (ENSDORG00000026903) #13	ENSDORG00000026706	Slc7a1 (ENSDORG00000006086) #14	ENSDORG00000025782 #15	Slc46a3 (ENSDORG00000012433) #16	Pomp (ENSDORG00000012432) #17	Flt1 (ENSDORG00000014729) #18	Pan3 (ENSDORG00000014727) #19	Flt3 (ENSDORG00000010727) #20	Urad (ENSDORG00000025006) #21	Cdx2 (ENSDORG00000005495) #22	Pdx1 (ENSDORG00000008418) #23	Gsx1 (ENSDORG00000029182) #24	Polr1d (ENSDORG00000029155) #26	Lnx2 (ENSDORG00000013453) #27	ENSDORG00000006081 #28	Gtf3a (ENSDORG00000006079) #29	Rasl11a (ENSDORG00000026016) #30	ENSDORG00000002226	ENSDORG00000002224	Usp12 (ENSDORG00000009137) #31	Gpr12 (ENSDORG00000011141) #32	Wasf3 (ENSDORG00000003345) #33	Cdk8 (ENSDORG00000011151) #34	Rnf6 (ENSDORG00000029431) #35
Rodentia_A	ANCESTRAL SPECIES	22	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.a.n ##11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00390000003643	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j #35	ENSGT00940000165049
Sciuridae	ANCESTRAL SPECIES	34	ENSGT00390000009484 #7	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.a.n ##11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b	ENSGT00940000153284.a.g.a ##31	ENSGT00950000182922.a.a.a.b.a.a.b.a	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32
Marmotini	ANCESTRAL SPECIES	29	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.b.b.b.b ##11	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b	ENSGT00940000153284.a.g.a ##31	ENSGT00950000182922.a.a.a.b.a.a.b.a	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00940000158453.a	ENSGT01050000244955.a.a	ENSGT01050000244897.a.b.b.b
Alpin marmot	MODERN SPECIES	13	TEX26 (ENSMMMG00000021931) #7	MEDAG (ENSMMMG00000021928) #8	ALOX5AP (ENSMMMG00000021924) #9	ENSMMMG00000021912 #10	ENSMMMG00000021875 ##11	KATNAL1 (ENSMMMG00000021861) #12	UBL3 (ENSMMMG00000021836) #13	SLC7A1 (ENSMMMG00000021811) #14	ENSMMMG00000021777 #15	SLC46A3 (ENSMMMG00000021759) #16	POMP (ENSMMMG00000021745) #17	FLT1 (ENSMMMG00000021722) #18	PAN3 (ENSMMMG00000021592) #19	FLT3 (ENSMMMG00000021498) #20	ENSMMMG00000021485 #21	CDX2 (ENSMMMG00000021482) #22	GSX1 (ENSMMMG00000021480) #24	POLR1D (ENSMMMG00000021469) #26	LNX2 (ENSMMMG00000021459) #27	MTIF3 (ENSMMMG00000021440) #28	GTF3A (ENSMMMG00000021436) #29	RASL11A (ENSMMMG00000021424) #30	RPL21 (ENSMMMG00000021415)	ENSMMMG00000021402 ##31	ENSMMMG00000021396	GPR12 (ENSMMMG00000021388) #32	SLITRK5 (ENSMMMG00000021362)	ENSMMMG00000021355	GPC5 (ENSMMMG00000021337)	GPC6 (ENSMMMG00000021294)	DCT (ENSMMMG00000021259)
Marmotini_b	ANCESTRAL SPECIES	39	ENSGT00390000009484 #7	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q #11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.a	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00940000158453.a	ENSGT01050000244955.a.a	ENSGT01050000244897.a.b.b.b	ENSGT00940000156856	ENSGT00940000159196
Arctic ground squirrel	MODERN SPECIES	58	MEDAG (ENSUPAG00010000596) #8	ALOX5AP (ENSUPAG00010000582) #9	USPL1 (ENSUPAG00010000537) #10	ENSUPAG00010000514 ##11	KATNAL1 (ENSUPAG00010000483) #12	UBL3 (ENSUPAG00010000449) #13	SLC7A1 (ENSUPAG00010000429) #14	ENSUPAG00010000338 #15	ENSUPAG00010000323	SLC46A3 (ENSUPAG00010000307) #16	POMP (ENSUPAG00010000279) #17	FLT1 (ENSUPAG00010000212) #18	PAN3 (ENSUPAG00010000039) #19	FLT3 (ENSUPAG00010018139) #20	ENSUPAG00010018133 #21	CDX2 (ENSUPAG00010018125) #22	PDX1 (ENSUPAG00010018122) #23	GSX1 (ENSUPAG00010018112) #24	POLR1D (ENSUPAG00010018107) #26	LNX2 (ENSUPAG00010018096) #27	MTIF3 (ENSUPAG00010018090) #28	GTF3A (ENSUPAG00010018082) #29	RASL11A (ENSUPAG00010018073) #30	ENSUPAG00010018061	USP12 (ENSUPAG00010018049) #31	GPR12 (ENSUPAG00010018043) #32	SLITRK5 (ENSUPAG00010018031)
Squirrel	MODERN SPECIES	72	ENSSTOG00000020892	MEDAG (ENSSTOG00000003534) #8	ALOX5AP (ENSSTOG00000010915) #9	USPL1 (ENSSTOG00000028023) #10	ENSSTOG00000000443 #11	KATNAL1 (ENSSTOG00000008802) #12	UBL3 (ENSSTOG00000012777) #13	SLC7A1 (ENSSTOG00000012771) #14	ENSSTOG00000022794 #15	SLC46A3 (ENSSTOG00000013694) #16	POMP (ENSSTOG00000013687) #17	FLT1 (ENSSTOG00000021178) #18	PAN3 (ENSSTOG00000009453) #19	FLT3 (ENSSTOG00000002925) #20	ENSSTOG00000028014 #21	ENSSTOG00000002918 #22	PDX1 (ENSSTOG00000028173) #23	GSX1 (ENSSTOG00000029234) #24	POLR1D (ENSSTOG00000013877) #26	LNX2 (ENSSTOG00000013869) #27	MTIF3 (ENSSTOG00000013866) #28	GTF3A (ENSSTOG00000013853) #29	RASL11A (ENSSTOG00000023879) #30	ENSSTOG00000033637	USP12 (ENSSTOG00000011364) #31	ENSSTOG00000023839	GPR12 (ENSSTOG00000011362) #32	SLITRK5 (ENSSTOG00000022257)	ENSSTOG00000029870	GPC6 (ENSSTOG00000025649)	DCT (ENSSTOG00000010422)
Eurasian red squirrel	MODERN SPECIES	13	TEX26 (ENSSVLG00005022083) #7	MEDAG (ENSSVLG00005022152) #8	ALOX5AP (ENSSVLG00005022177) #9	USPL1 (ENSSVLG00005022232) #10	ENSSVLG00005022302 ##11	KATNAL1 (ENSSVLG00005022343) #12	UBL3 (ENSSVLG00005022374) #13	SLC7A1 (ENSSVLG00005022416) #14	MTUS2 (ENSSVLG00005022484) #15	SLC46A3 (ENSSVLG00005022784) #16	POMP (ENSSVLG00005022839) #17	FLT1 (ENSSVLG00005022893) #18	PAN3 (ENSSVLG00005022998) #19	FLT3 (ENSSVLG00005023095) #20	URAD (ENSSVLG00005023233)	CDX2 (ENSSVLG00005023249) #22	PDX1 (ENSSVLG00005023276) #23	GSX1 (ENSSVLG00005023295) #24	POLR1D (ENSSVLG00005023318) #26	LNX2 (ENSSVLG00005023366) #27	MTIF3 (ENSSVLG00005023396) #28	GTF3A (ENSSVLG00005023413) #29	RASL11A (ENSSVLG00005023466) #30	ENSSVLG00005000213	ENSSVLG00005000350 ##31	GPR12 (ENSSVLG00005000385) #32	ENSSVLG00005000420	ENSSVLG00005000440	SLITRK5 (ENSSVLG00005000517)	ENSSVLG00005000527	ENSSVLG00005000550
Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.a.n ##11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j.p #17	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00390000003643	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647.c #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j #35	ENSGT00940000165049
Naked mole-rat female	MODERN SPECIES	2	USPL1 (ENSHGLG00000036213) #10	ENSHGLG00000003352 ##11	KATNAL1 (ENSHGLG00000003538) #12	UBL3 (ENSHGLG00000040587) #13	ENSHGLG00000033244	ENSHGLG00000019220 #14	ENSHGLG00000013589 #15	ENSHGLG00000012383	ENSHGLG00000039882 ##17	SLC46A3 (ENSHGLG00000007999) #16	ENSHGLG00000008991 #17	FLT1 (ENSHGLG00000003643) #18	PAN3 (ENSHGLG00000018782) #19	FLT3 (ENSHGLG00000005717) #20	URAD (ENSHGLG00000008479)	CDX2 (ENSHGLG00000009166) #22	PDX1 (ENSHGLG00000010243) #23	GSX1 (ENSHGLG00000039858) #24	ENSHGLG00000003202	POLR1D (ENSHGLG00000039229) #26	LNX2 (ENSHGLG00000003410) #27	MTIF3 (ENSHGLG00000003959) #28	ENSHGLG00000004173 #29	RASL11A (ENSHGLG00000005304) #30	ENSHGLG00000005660	ENSHGLG00000006711 #31	GPR12 (ENSHGLG00000042343) #32	WASF3 (ENSHGLG00000006350) #33	ENSHGLG00000006446	CDK8 (ENSHGLG00000007563) #34	RNF6 (ENSHGLG00000008194) #35
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.a.n ##11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j.p #17	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00390000003643	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647.c #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.b.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j #35	ENSGT00940000165049
Guinea pig	MODERN SPECIES	6	ENSCPOG00000035490	ENSCPOG00000007441	MEDAG (ENSCPOG00000003921) #8	ALOX5AP (ENSCPOG00000032690) #9	USPL1 (ENSCPOG00000009937) #10	HMGB1 (ENSCPOG00000031835) ##11	KATNAL1 (ENSCPOG00000000804) #12	UBL3 (ENSCPOG00000036242) #13	SLC7A1 (ENSCPOG00000005590) #14	ENSCPOG00000005581 #15	SLC46A3 (ENSCPOG00000015460) #16	POMP (ENSCPOG00000001710) #17	FLT1 (ENSCPOG00000013357) #18	PAN3 (ENSCPOG00000013349) #19	FLT3 (ENSCPOG00000007285) #20	CDX2 (ENSCPOG00000007276) #22	PDX1 (ENSCPOG00000024534) #23	ENSCPOG00000026854	ENSCPOG00000033461	LNX2 (ENSCPOG00000010152) #27	MTIF3 (ENSCPOG00000010148) #28	GTF3A (ENSCPOG00000010143) #29	RASL11A (ENSCPOG00000031264) #30	ENSCPOG00000008784	USP12 (ENSCPOG00000005241) #31	ENSCPOG00000020112	WASF3 (ENSCPOG00000010156) #33	CDK8 (ENSCPOG00000040435) #34	RNF6 (ENSCPOG00000009120) #35	SHISA2 (ENSCPOG00000009049)	ATP8A2 (ENSCPOG00000032003)
Hystricomorpha_b	ANCESTRAL SPECIES	48	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.a.n ##11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j.p #17	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00390000003643	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647.c #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530.j #35	ENSGT00940000165049
Degu	MODERN SPECIES	79	ENSODEG00000006120 ##11	KATNAL1 (ENSODEG00000005926) #12	UBL3 (ENSODEG00000005571) #13	ENSODEG00000005438	SLC7A1 (ENSODEG00000005306) #14	ENSODEG00000005871 #15	ENSODEG00000006635	SLC46A3 (ENSODEG00000006238) #16	ENSODEG00000005569	ENSODEG00000005111 #17	ENSODEG00000006274 #18	ENSODEG00000006016	PAN3 (ENSODEG00000005038) #19	FLT3 (ENSODEG00000007884) #20	ENSODEG00000007620 #21	CDX2 (ENSODEG00000007340) #22	PDX1 (ENSODEG00000005235) #23	ENSODEG00000019134	GSX1 (ENSODEG00000005135) #24	ENSODEG00000006454	ENSODEG00000005294 #26	LNX2 (ENSODEG00000006222) #27	MTIF3 (ENSODEG00000006818) #28	GTF3A (ENSODEG00000006725) #29	RASL11A (ENSODEG00000005775) #30	ENSODEG00000005022	USP12 (ENSODEG00000006744) #31	GPR12 (ENSODEG00000006388) #32	WASF3 (ENSODEG00000005353) #33	ENSODEG00000005140	ENSODEG00000006456 #34
Long-tailed chinchilla	MODERN SPECIES	204											SLC46A3 (ENSCLAG00000009379) #16	POMP (ENSCLAG00000008609) #17	FLT1 (ENSCLAG00000008187) #18	PAN3 (ENSCLAG00000007575) #19	FLT3 (ENSCLAG00000007093) #20	CDX2 (ENSCLAG00000006810) #22	PDX1 (ENSCLAG00000006652) #23	GSX1 (ENSCLAG00000004357) #24	ENSCLAG00000004320	POLR1D (ENSCLAG00000017623) #26	LNX2 (ENSCLAG00000004148) #27	MTIF3 (ENSCLAG00000004080) #28	GTF3A (ENSCLAG00000003912) #29	RASL11A (ENSCLAG00000003867) #30	Rpl21 (ENSCLAG00000003656)	USP12 (ENSCLAG00000003543) #31	GPR12 (ENSCLAG00000003409) #32	WASF3 (ENSCLAG00000003372) #33	CDK8 (ENSCLAG00000003311) #34	RNF6 (ENSCLAG00000003242) #35	ENSCLAG00000003030
Lagomorpha	ANCESTRAL SPECIES	166								ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00940000153229.A.b	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00390000003643	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h #31
Rabbit	MODERN SPECIES	468							SLC7A1 (ENSOCUG00000013493) #14	ENSOCUG00000030839 #15	ENSOCUG00000013473 #15	SLC46A3 (ENSOCUG00000010129) #16	POMP (ENSOCUG00000010137) #17	FLT1 (ENSOCUG00000008523) #18	PAN3 (ENSOCUG00000008509) #19	FLT3 (ENSOCUG00000004897) #20	URAD (ENSOCUG00000026219)	CDX2 (ENSOCUG00000004893) #22	PDX1 (ENSOCUG00000004891) #23	GSX1 (ENSOCUG00000023424) #24	ENSOCUG00000015706	LNX2 (ENSOCUG00000015683) #27	MTIF3 (ENSOCUG00000011721) #28	GTF3A (ENSOCUG00000011713) #29	ENSOCUG00000038419	RASL11A (ENSOCUG00000008121) #30	ENSOCUG00000002506	USP12 (ENSOCUG00000007088) #31
Pika	MODERN SPECIES	1637															URAD (ENSOPRG00000003060)	CDX2 (ENSOPRG00000003043) #22	ENSOPRG00000003035	LNX2 (ENSOPRG00000003017) #27
Tree shrew	MODERN SPECIES	7903															URAD (ENSTBEG00000005892)	CDX2 (ENSTBEG00000006155) #22
Primates	ANCESTRAL SPECIES	29	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.a.n ##11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000165049	ENSGT00940000157443
Strepsirrhini	ANCESTRAL SPECIES	41	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.a.n ##11	ENSGT00950000183120.e.b.a.a.b.b.a.b.b #11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00950000182922.a.a.a.b.b.a.a.a	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000165049
Lemuriformes	ANCESTRAL SPECIES	18	ENSGT00390000009484 #7	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.a.n ##11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a	ENSGT00940000153284.a.h #31	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b.d	ENSGT00950000183171.B	ENSGT00730000111659	ENSGT00940000154936.qb
Lemuriformes_a	ANCESTRAL SPECIES	218														ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00390000003643	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00950000182922.a.a.a.b.b.a.a.a	ENSGT00940000153284.a.h #31
Coquerels sifaka	MODERN SPECIES	436														FLT3 (ENSPCOG00000024372) #20	ENSPCOG00000024369 #21	CDX2 (ENSPCOG00000017128) #22	PDX1 (ENSPCOG00000006631) #23	GSX1 (ENSPCOG00000018002) #24	POLR1D (ENSPCOG00000028175) #26	LNX2 (ENSPCOG00000027388) #27	MTIF3 (ENSPCOG00000025631) #28	GTF3A (ENSPCOG00000016742) #29	RASL11A (ENSPCOG00000009447) #30	ENSPCOG00000024417	USP12 (ENSPCOG00000027540) #31	SGCG (ENSPCOG00000024563)	SACS (ENSPCOG00000014915)	TNFRSF19 (ENSPCOG00000024171)	MIPEP (ENSPCOG00000022864)	ENSPCOG00000020115	ENSPCOG00000010750
Greater bamboo lemur	MODERN SPECIES	742														FLT3 (ENSPSMG00000023610) #20	URAD (ENSPSMG00000023629)	CDX2 (ENSPSMG00000023632) #22	PDX1 (ENSPSMG00000023637) #23	GSX1 (ENSPSMG00000023639) #24	ENSPSMG00000023644	LNX2 (ENSPSMG00000023653) #27	MTIF3 (ENSPSMG00000023658) #28	GTF3A (ENSPSMG00000023668) #29	RASL11A (ENSPSMG00000023672) #30	ENSPSMG00000023677	ENSPSMG00000023686	USP12 (ENSPSMG00000023737) #31
Mouse lemur	MODERN SPECIES	4	ALOX5AP (ENSMICG00000001953) #9	USPL1 (ENSMICG00000045622) #10	ENSMICG00000007144 #11	KATNAL1 (ENSMICG00000004250) #12	UBL3 (ENSMICG00000033508) #13	SLC7A1 (ENSMICG00000016312) #14	ENSMICG00000032922 #15	ENSMICG00000016299 #15	SLC46A3 (ENSMICG00000016295) #16	POMP (ENSMICG00000032068) #17	FLT1 (ENSMICG00000016251) #18	PAN3 (ENSMICG00000016237) #19	ENSMICG00000027752	FLT3 (ENSMICG00000016201) #20	ENSMICG00000032881 #21	CDX2 (ENSMICG00000031345) #22	PDX1 (ENSMICG00000043487) #23	GSX1 (ENSMICG00000044124) #24	ENSMICG00000016883 #26	LNX2 (ENSMICG00000016873) #27	MTIF3 (ENSMICG00000014777) #28	GTF3A (ENSMICG00000014763) #29	RASL11A (ENSMICG00000029724) #30	ENSMICG00000006269 #31	ENSMICG00000028275	SGCG (ENSMICG00000038162)	SACS (ENSMICG00000034895)	ENSMICG00000042745	MIPEP (ENSMICG00000036068)	ENSMICG00000047845	ENSMICG00000045668
Bushbaby	MODERN SPECIES	235	USPL1 (ENSOGAG00000015490) #10	ENSOGAG00000026314	ENSOGAG00000030054	ENSOGAG00000003205 #11	KATNAL1 (ENSOGAG00000011308) #12	UBL3 (ENSOGAG00000004035) #13	SLC7A1 (ENSOGAG00000010813) #14	MTUS2 (ENSOGAG00000010807) #15	SLC46A3 (ENSOGAG00000006042) #16	POMP (ENSOGAG00000006044) #17	FLT1 (ENSOGAG00000014611) #18	PAN3 (ENSOGAG00000014604) #19	ENSOGAG00000031357	FLT3 (ENSOGAG00000016694) #20	ENSOGAG00000016692 #21	CDX2 (ENSOGAG00000026117) #22	PDX1 (ENSOGAG00000016688) #23	GSX1 (ENSOGAG00000011242) #24	POLR1D (ENSOGAG00000014601) #26	LNX2 (ENSOGAG00000014599) #27	MTIF3 (ENSOGAG00000014597) #28	GTF3A (ENSOGAG00000014589) #29	RASL11A (ENSOGAG00000008177) #30	ENSOGAG00000008181	ENSOGAG00000030191	USP12 (ENSOGAG00000030639) #31	GPR12 (ENSOGAG00000006144) #32	WASF3 (ENSOGAG00000006728) #33	ENSOGAG00000026985	CDK8 (ENSOGAG00000006569) #34	RNF6 (ENSOGAG00000024893) #35
Haplorrhini	ANCESTRAL SPECIES	43	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.b.b.b.b ##11	ENSGT00950000183120.e.b.a.a.a.n ##11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00940000153229.A.b	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000157443	ENSGT00940000157332
Simiiformes	ANCESTRAL SPECIES	22	ENSGT00390000018451 #8	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.a.n ##11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00940000153229.A.b	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000157443	ENSGT00940000157332
Platyrrhini	ANCESTRAL SPECIES	23	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.b.b.b.b ##11	ENSGT00950000183120.e.b.b.b ##11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00950000182965.a.b.b.b.g.a	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000157443	ENSGT00940000157332
Cebidae	ANCESTRAL SPECIES	26	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.a.b.b.b.b ##11	ENSGT00950000183120.e.b.b.b ##11	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00950000182965.a.b.b.b.g.a	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000157443	ENSGT00940000157332
Cebidae_a	ANCESTRAL SPECIES	28	ENSGT00940000158706 #9	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.b.b ##11	ENSGT00940000156630 #12	ENSGT00390000011417.k.d	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00950000182965.a.b.b.b.g.a	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160 #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000157443	ENSGT00940000157332
Capuchin	MODERN SPECIES	103	ENSCCAG00000032047	ENSCCAG00000028011 ##11	KATNA1 (ENSCCAG00000029984) #12	UBL3 (ENSCCAG00000021780) #13	CIAPIN1 (ENSCCAG00000020425)	SLC7A1 (ENSCCAG00000000822) #14	MTUS2 (ENSCCAG00000025313) #15	SLC46A3 (ENSCCAG00000025858) #16	POMP (ENSCCAG00000027871) #17	FLT1 (ENSCCAG00000035784) #18	ENSCCAG00000000468	PAN3 (ENSCCAG00000021218) #19	ENSCCAG00000027785	FLT3 (ENSCCAG00000022587) #20	ENSCCAG00000029430 #21	CDX2 (ENSCCAG00000025801) #22	PDX1 (ENSCCAG00000036295) #23	GSX1 (ENSCCAG00000025929) #24	ENSCCAG00000021349 #26	LNX2 (ENSCCAG00000020368) #27	ENSCCAG00000026568	MTIF3 (ENSCCAG00000036048) #28	GTF3A (ENSCCAG00000029730) #29	RASL11A (ENSCCAG00000021842) #30	ENSCCAG00000031101	USP12 (ENSCCAG00000023369) #31	ENSCCAG00000021328	GPR12 (ENSCCAG00000020040) #32	WASF3 (ENSCCAG00000029799) #33	CDK8 (ENSCCAG00000037833) #34	RNF6 (ENSCCAG00000037182) #35
Bolivian squirrel monkey	MODERN SPECIES	42	ENSSBOG00000020013	UBL3 (ENSSBOG00000009211) #13	ENSSBOG00000028866	SLC7A1 (ENSSBOG00000020061) #14	MTUS2 (ENSSBOG00000026505) #15	ENSSBOG00000019071	SLC46A3 (ENSSBOG00000025396) #16	POMP (ENSSBOG00000032229) #17	FLT1 (ENSSBOG00000015766) #18	ENSSBOG00000020899	PAN3 (ENSSBOG00000020298) #19	ENSSBOG00000032374	FLT3 (ENSSBOG00000026666) #20	ENSSBOG00000020835	ENSSBOG00000027743 #21	CDX2 (ENSSBOG00000031573) #22	PDX1 (ENSSBOG00000031436) #23	GSX1 (ENSSBOG00000026103) #24	ENSSBOG00000015416	ENSSBOG00000028482 #26	ENSSBOG00000014497	LNX2 (ENSSBOG00000025148) #27	MTIF3 (ENSSBOG00000030469) #28	GTF3A (ENSSBOG00000002098) #29	RASL11A (ENSSBOG00000025363) #30	ENSSBOG00000031441	ENSSBOG00000023626 #31	GPR12 (ENSSBOG00000015914) #32	WASF3 (ENSSBOG00000025202) #33	CDK8 (ENSSBOG00000031790) #34	RNF6 (ENSSBOG00000022531) #35
Marmoset	MODERN SPECIES	17	ENSCJAG00000079039	KATNAL1 (ENSCJAG00000021612) #12	UBL3 (ENSCJAG00000019517) #13	ENSCJAG00000058143	SLC7A1 (ENSCJAG00000019515) #14	ENSCJAG00000072801	MTUS2 (ENSCJAG00000019500) #15	SLC46A3 (ENSCJAG00000019491) #16	POMP (ENSCJAG00000019473) #17	ENSCJAG00000080582	FLT1 (ENSCJAG00000019447) #18	PAN3 (ENSCJAG00000019421) #19	ENSCJAG00000073991	FLT3 (ENSCJAG00000019405) #20	ENSCJAG00000019404 #21	CDX2 (ENSCJAG00000019398) #22	ENSCJAG00000076582	PDX1 (ENSCJAG00000078316) #23	GSX1 (ENSCJAG00000080181) #24	POLR1D (ENSCJAG00000044669) #26	LNX2 (ENSCJAG00000019379) #27	MTIF3 (ENSCJAG00000019378) #28	GTF3A (ENSCJAG00000077697) #29	RASL11A (ENSCJAG00000019369) #30	ENSCJAG00000044684	ENSCJAG00000069611	ENSCJAG00000073678	USP12 (ENSCJAG00000019344) #31	ENSCJAG00000086732	GPR12 (ENSCJAG00000019338) #32	WASF3 (ENSCJAG00000019325) #33
Mas night monkey	MODERN SPECIES	331									ENSANAG00000035277 #17	FLT1 (ENSANAG00000027521) #18	ENSANAG00000028102	PAN3 (ENSANAG00000028419) #19	ENSANAG00000034890	FLT3 (ENSANAG00000025242) #20	URAD (ENSANAG00000029018)	CDX2 (ENSANAG00000030392) #22	PDX1 (ENSANAG00000033534) #23	GSX1 (ENSANAG00000020508) #24	POLR1D (ENSANAG00000024486) #26	LNX2 (ENSANAG00000028866) #27	ENSANAG00000024188	MTIF3 (ENSANAG00000031630) #28	GTF3A (ENSANAG00000019293) #29	RASL11A (ENSANAG00000027999) #30	ENSANAG00000023031	ENSANAG00000032118 #31	NUP58 (ENSANAG00000023073)	MTMR6 (ENSANAG00000025737)	AMER2 (ENSANAG00000025607)
Catarrhini	ANCESTRAL SPECIES	21	ENSGT00910000148031	ENSGT00940000155349 #14	ENSGT00910000147174	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000153889.e.b.a.d.a	ENSGT00910000147093	ENSGT00910000146937	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00440000038159.p.b	ENSGT00940000160575 #20	ENSGT00940000153229.A.b	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00390000003643	ENSGT00550000075160.x #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000157443
Hominoidea	ANCESTRAL SPECIES	21	ENSGT00910000148031	ENSGT00940000155349 #14	ENSGT00910000147174	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000153889.e.b.a.d.a	ENSGT00910000147093	ENSGT00910000146937	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00440000038159.p.b	ENSGT00940000160575 #20	ENSGT00940000153229.A.b	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160.x #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000157443	ENSGT00940000157332
Hominidae	ANCESTRAL SPECIES	23	ENSGT00390000004952.b #13	ENSGT00910000148031	ENSGT00940000155349 #14	ENSGT00910000147174	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000153889.f	ENSGT00910000146937	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00440000038159.p.b	ENSGT00940000160575 #20	ENSGT00940000153229.A.b	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160.x #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000157443	ENSGT00940000157332
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	23	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00910000148031	ENSGT00940000155349 #14	ENSGT00910000147174	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000153889.f	ENSGT00910000146937	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00940000153229.A.b	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160.x #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000157443	ENSGT00940000157332
Homo/Pan group	ANCESTRAL SPECIES	22	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00910000148031	ENSGT00940000155349 #14	ENSGT00910000147174	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000153889.f	ENSGT00910000146937	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00940000153229.A.b	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160.x #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000157443	ENSGT00940000157332
Pan	ANCESTRAL SPECIES	22	ENSGT00390000004952.b #13	ENSGT00910000148031	ENSGT00940000155349 #14	ENSGT00910000147174	ENSGT00950000183026.B #15	ENSGT00930000151026.f	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000153889.f	ENSGT00910000146937	ENSGT00940000158713 #18	ENSGT00940000164144	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00940000153229.A.b	ENSGT00940000161261 #22	ENSGT00390000015470.z.b	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160.x #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000157443
Chimpanzee	MODERN SPECIES	4	UBL3 (ENSPTRG00000005751) #13	ENSPTRG00000049804	SLC7A1 (ENSPTRG00000005750) #14	ENSPTRG00000046056	MTUS2 (ENSPTRG00000005747) #15	ENSPTRG00000045489	SLC46A3 (ENSPTRG00000005746) #16	POMP (ENSPTRG00000005745) #17	ENSPTRG00000046663	ENSPTRG00000045890	FLT1 (ENSPTRG00000005743) #18	PAN3 (ENSPTRG00000005742) #19	ENSPTRG00000046829	FLT3 (ENSPTRG00000005740) #20	URAD (ENSPTRG00000005739)	CDX2 (ENSPTRG00000043330) #22	ENSPTRG00000005737	PDX1 (ENSPTRG00000005736) #23	GSX1 (ENSPTRG00000005735) #24	POLR1D (ENSPTRG00000005734) #26	LNX2 (ENSPTRG00000005733) #27	MTIF3 (ENSPTRG00000005732) #28	GTF3A (ENSPTRG00000005730) #29	RASL11A (ENSPTRG00000005729) #30	RPL21 (ENSPTRG00000005728)	USP12 (ENSPTRG00000005727) #31	GPR12 (ENSPTRG00000046989) #32	WASF3 (ENSPTRG00000005725) #33	CDK8 (ENSPTRG00000005724) #34	RNF6 (ENSPTRG00000005723) #35	SHISA2 (ENSPTRG00000047295)
Bonobo	MODERN SPECIES	4	ENSPPAG00000037440	KATNAL1 (ENSPPAG00000033530) #12	UBL3 (ENSPPAG00000027496) #13	ENSPPAG00000015303	SLC7A1 (ENSPPAG00000037016) #14	ENSPPAG00000034238	MTUS2 (ENSPPAG00000032687) #15	ENSPPAG00000027903	SLC46A3 (ENSPPAG00000035795) #16	POMP (ENSPPAG00000036286) #17	ENSPPAG00000027416	ENSPPAG00000033250 #18	ENSPPAG00000030264	PAN3 (ENSPPAG00000027826) #19	FLT3 (ENSPPAG00000015701) #20	CDX2 (ENSPPAG00000032963) #22	ENSPPAG00000032440	ENSPPAG00000032720 #23	GSX1 (ENSPPAG00000032556) #24	ENSPPAG00000028138 #26	LNX2 (ENSPPAG00000027444) #27	MTIF3 (ENSPPAG00000027304) #28	GTF3A (ENSPPAG00000034725) #29	RASL11A (ENSPPAG00000027996) #30	ENSPPAG00000042860	ENSPPAG00000007246 #31	GPR12 (ENSPPAG00000007707) #32	WASF3 (ENSPPAG00000035699) #33	CDK8 (ENSPPAG00000035126) #34	RNF6 (ENSPPAG00000035870) #35	SHISA2 (ENSPPAG00000032206)
Human	MODERN SPECIES	4	MEDAG (ENSG00000102802) #8	ALOX5AP (ENSG00000132965) #9	USPL1 (ENSG00000132952) #10	HMGB1 (ENSG00000189403) ##11	UBE2L5 (ENSG00000236444)	KATNAL1 (ENSG00000102781) #12	UBL3 (ENSG00000122042) #13	SLC7A1 (ENSG00000139514) #14	MTUS2 (ENSG00000132938) #15	SLC46A3 (ENSG00000139508) #16	POMP (ENSG00000132963) #17	FLT1 (ENSG00000102755) #18	PAN3 (ENSG00000152520) #19	FLT3 (ENSG00000122025) #20	URAD (ENSG00000183463)	CDX2 (ENSG00000165556) #22	PDX1 (ENSG00000139515) #23	GSX1 (ENSG00000169840) #24	POLR1D (ENSG00000186184) #26	LNX2 (ENSG00000139517) #27	MTIF3 (ENSG00000122033) #28	GTF3A (ENSG00000122034) #29	RASL11A (ENSG00000122035) #30	RPL21 (ENSG00000122026)	USP12 (ENSG00000152484) #31	GPR12 (ENSG00000132975) #32	WASF3 (ENSG00000132970) #33	CDK8 (ENSG00000132964) #34	RNF6 (ENSG00000127870) #35	SHISA2 (ENSG00000180730)	ATP8A2 (ENSG00000132932)
Gorilla	MODERN SPECIES	4	USPL1 (ENSGGOG00000004673) #10	HMGB1 (ENSGGOG00000026764) ##11	UBE2L5 (ENSGGOG00000006857)	ENSGGOG00000024714	KATNAL1 (ENSGGOG00000026875) #12	UBL3 (ENSGGOG00000023146) #13	ENSGGOG00000042729	SLC46A3 (ENSGGOG00000014254) #16	POMP (ENSGGOG00000015316) #17	ENSGGOG00000036780	ENSGGOG00000036812	FLT1 (ENSGGOG00000008750) #18	PAN3 (ENSGGOG00000016079) #19	FLT3 (ENSGGOG00000000882) #20	URAD (ENSGGOG00000005489)	CDX2 (ENSGGOG00000005487) #22	PDX1 (ENSGGOG00000002569) #23	GSX1 (ENSGGOG00000005011) #24	POLR1D (ENSGGOG00000004235) #26	LNX2 (ENSGGOG00000016167) #27	MTIF3 (ENSGGOG00000041079) #28	GTF3A (ENSGGOG00000008407) #29	RASL11A (ENSGGOG00000008785) #30	ENSGGOG00000003002	ENSGGOG00000011358 #31	GPR12 (ENSGGOG00000000849) #32	WASF3 (ENSGGOG00000012518) #33	CDK8 (ENSGGOG00000006569) #34	RNF6 (ENSGGOG00000006568) #35	ENSGGOG00000025679	ATP8A2 (ENSGGOG00000003045)
Orangutan	MODERN SPECIES	4	ENSPPYG00000031030	KATNAL1 (ENSPPYG00000005253) #12	UBL3 (ENSPPYG00000037129) #13	ENSPPYG00000034870	SLC7A1 (ENSPPYG00000005250) #14	MTUS2 (ENSPPYG00000005249) #15	SLC46A3 (ENSPPYG00000005248) #16	POMP (ENSPPYG00000005247) #17	ENSPPYG00000038952	ENSPPYG00000034417	FLT1 (ENSPPYG00000005246) #18	PAN3 (ENSPPYG00000005245) #19	ENSPPYG00000040072	FLT3 (ENSPPYG00000005244) #20	URAD (ENSPPYG00000005243)	CDX2 (ENSPPYG00000005242) #22	ENSPPYG00000005241	PDX1 (ENSPPYG00000005240) #23	GSX1 (ENSPPYG00000005239) #24	ENSPPYG00000005238	LNX2 (ENSPPYG00000005237) #27	MTIF3 (ENSPPYG00000005236) #28	GTF3A (ENSPPYG00000005235) #29	RASL11A (ENSPPYG00000005234) #30	RPL21 (ENSPPYG00000005233)	USP12 (ENSPPYG00000005232) #31	GPR12 (ENSPPYG00000005231) #32	WASF3 (ENSPPYG00000005230) #33	CDK8 (ENSPPYG00000005229) #34	RNF6 (ENSPPYG00000005228) #35	SHISA2 (ENSPPYG00000030544)
Gibbon	MODERN SPECIES	24	SLC7A1 (ENSNLEG00000000622) #14	ENSNLEG00000035615 #15	ENSNLEG00000033304	ENSNLEG00000000618 #15	SLC46A3 (ENSNLEG00000000599) #16	POMP (ENSNLEG00000000572) #17	ENSNLEG00000000571	ENSNLEG00000033802	ENSNLEG00000030098	FLT1 (ENSNLEG00000000456) #18	PAN3 (ENSNLEG00000000388) #19	ENSNLEG00000029210	ENSNLEG00000035718	FLT3 (ENSNLEG00000000372) #20	URAD (ENSNLEG00000000369)	CDX2 (ENSNLEG00000000365) #22	PDX1 (ENSNLEG00000000362) #23	GSX1 (ENSNLEG00000000360) #24	ENSNLEG00000000358 #26	LNX2 (ENSNLEG00000000345) #27	MTIF3 (ENSNLEG00000000343) #28	GTF3A (ENSNLEG00000000331) #29	RASL11A (ENSNLEG00000000329) #30	ENSNLEG00000000327	ENSNLEG00000000323 #31	ATP2B4 (ENSNLEG00000018117)	ENSNLEG00000033057	OPTC (ENSNLEG00000018116)	PRELP (ENSNLEG00000018115)	FMOD (ENSNLEG00000018114)	BTG2 (ENSNLEG00000034785)
Cercopithecidae	ANCESTRAL SPECIES	23	ENSGT00910000148031	ENSGT00940000155349 #14	ENSGT00910000147174	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000153889.e.b.a.d.a	ENSGT00910000147093	ENSGT00910000146937	ENSGT00940000158713 #18	ENSGT00910000147887	ENSGT00390000001504 #19	ENSGT00440000038159.p.b	ENSGT00940000160575 #20	ENSGT00940000153229.A.b	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00390000003643	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000165378.d	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000157443
Cercopithecinae	ANCESTRAL SPECIES	20	ENSGT00950000183120.e.b.a.a.a.n ##11	ENSGT00940000156630 #12	ENSGT00940000155828.o.a	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00910000147174	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000158713 #18	ENSGT00910000147887	ENSGT00390000001504 #19	ENSGT00440000038159.p.b	ENSGT00940000160575 #20	ENSGT00940000153229.A.b	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00390000003643	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000165378.d	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000157443
Vervet Monkey	MODERN SPECIES	22	HSPH1 (ENSCSAG00000017943)	TEX26 (ENSCSAG00000017946) #7	MEDAG (ENSCSAG00000017948) #8	ALOX5AP (ENSCSAG00000017950) #9	USPL1 (ENSCSAG00000017953) #10	KATNAL1 (ENSCSAG00000017958) #12	UBL3 (ENSCSAG00000017959) #13	SLC7A1 (ENSCSAG00000017961) #14	MTUS2 (ENSCSAG00000017964) #15	SLC46A3 (ENSCSAG00000017966) #16	POMP (ENSCSAG00000017967) #17	FLT1 (ENSCSAG00000017969) #18	PAN3 (ENSCSAG00000017971) #19	FLT3 (ENSCSAG00000017973) #20	URAD (ENSCSAG00000017975)	CDX2 (ENSCSAG00000017976) #22	PDX1 (ENSCSAG00000017977) #23	GSX1 (ENSCSAG00000017979) #24	ENSCSAG00000017980	LNX2 (ENSCSAG00000017981) #27	MTIF3 (ENSCSAG00000017982) #28	GTF3A (ENSCSAG00000017983) #29	RASL11A (ENSCSAG00000017985) #30	ENSCSAG00000017986 #31	GPR12 (ENSCSAG00000018592) #32	WASF3 (ENSCSAG00000017987) #33	CDK8 (ENSCSAG00000017989) #34	RNF6 (ENSCSAG00000017991) #35	SHISA2 (ENSCSAG00000017992)	ATP8A2 (ENSCSAG00000017997)	NUP58 (ENSCSAG00000018000)
Cercopithecinae_a	ANCESTRAL SPECIES	19	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00910000147174	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000153783.a	ENSGT00910000147093	ENSGT00910000146937	ENSGT00940000158713 #18	ENSGT00910000147887	ENSGT00390000001504 #19	ENSGT00440000038159.p.b	ENSGT00940000160575 #20	ENSGT00940000153229.A.b	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00390000003643	ENSGT00910000147903	ENSGT00550000075160.x #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a.m	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000165378.d	ENSGT00940000157104 #34
Cercopithecinae_b	ANCESTRAL SPECIES	28	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00910000147174	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000153783.a	ENSGT00910000147093	ENSGT00910000146937	ENSGT00940000158713 #18	ENSGT00910000147887	ENSGT00390000001504 #19	ENSGT00440000038159.p.b	ENSGT00940000160575 #20	ENSGT00940000153229.A.b	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00910000147903	ENSGT00550000075160.x #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a.m	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000165378.d	ENSGT00940000157104 #34	ENSGT00940000158530 #35
Olive baboon	MODERN SPECIES	6	ALOX5AP (ENSPANG00000020217) #9	USPL1 (ENSPANG00000005488) #10	HMGB1 (ENSPANG00000007200) ##11	UBE2L5 (ENSPANG00000043221)	KATNAL1 (ENSPANG00000023364) #12	UBL3 (ENSPANG00000008471) #13	SLC7A1 (ENSPANG00000012138) #14	MTUS2 (ENSPANG00000013682) #15	SLC46A3 (ENSPANG00000020218) #16	POMP (ENSPANG00000046275) #17	ENSPANG00000044787	FLT1 (ENSPANG00000009892) #18	PAN3 (ENSPANG00000001988) #19	FLT3 (ENSPANG00000009315) #20	URAD (ENSPANG00000014018)	CDX2 (ENSPANG00000050183) #22	PDX1 (ENSPANG00000012683) #23	ENSPANG00000047094	GSX1 (ENSPANG00000017129) #24	ENSPANG00000038544	ENSPANG00000020259 #26	LNX2 (ENSPANG00000012983) #27	MTIF3 (ENSPANG00000005047) #28	GTF3A (ENSPANG00000012593) #29	RASL11A (ENSPANG00000044196) #30	ENSPANG00000011984	USP12 (ENSPANG00000011533) #31	GPR12 (ENSPANG00000003061) #32	WASF3 (ENSPANG00000009058) #33	CDK8 (ENSPANG00000001990) #34	RNF6 (ENSPANG00000005719) #35
Cercopithecinae_d	ANCESTRAL SPECIES	93	ENSGT00910000148031	ENSGT00940000155349 #14	ENSGT00910000147174	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000153783.a	ENSGT00910000147093	ENSGT00910000146937	ENSGT00940000158713 #18	ENSGT00910000147887	ENSGT00390000001504 #19	ENSGT00440000038159.p.b	ENSGT00940000160575 #20	ENSGT00940000153229.A.b	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00910000147903	ENSGT00550000075160.x #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a.m	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000165378.d	ENSGT00940000157104 #34	ENSGT00940000158530 #35
Drill	MODERN SPECIES	1324						ENSMLEG00000006158 ##15	SLC46A3 (ENSMLEG00000044293) #16	POMP (ENSMLEG00000039576) #17	ENSMLEG00000042438	ENSMLEG00000036390	ENSMLEG00000038076	FLT1 (ENSMLEG00000034284) #18	ENSMLEG00000003098	PAN3 (ENSMLEG00000008619) #19	FLT3 (ENSMLEG00000037398) #20	CDX2 (ENSMLEG00000037430) #22	PDX1 (ENSMLEG00000032316) #23	ENSMLEG00000041805	ENSMLEG00000041048 #26	LNX2 (ENSMLEG00000039062) #27	MTIF3 (ENSMLEG00000039110) #28	GTF3A (ENSMLEG00000039703) #29	RASL11A (ENSMLEG00000036089) #30	ENSMLEG00000024280	ENSMLEG00000033598 #31	GPR12 (ENSMLEG00000002545) #32	WASF3 (ENSMLEG00000040168) #33	CDK8 (ENSMLEG00000040071) #34	RNF6 (ENSMLEG00000038569) #35	SHISA2 (ENSMLEG00000034103)	ENSMLEG00000036990
Sooty mangabey	MODERN SPECIES	255		ENSCATG00000034802	SLC7A1 (ENSCATG00000025899) #14	ENSCATG00000037549	MTUS2 (ENSCATG00000041831) #15	SLC46A3 (ENSCATG00000021488) #16	POMP (ENSCATG00000037462) #17	ENSCATG00000033485	ENSCATG00000028829	ENSCATG00000024438	FLT1 (ENSCATG00000034541) #18	PAN3 (ENSCATG00000030893) #19	ENSCATG00000032726	FLT3 (ENSCATG00000014529) #20	URAD (ENSCATG00000007826)	CDX2 (ENSCATG00000007363) #22	PDX1 (ENSCATG00000035793) #23	GSX1 (ENSCATG00000028004) #24	ENSCATG00000002488	ENSCATG00000030710 #26	LNX2 (ENSCATG00000035354) #27	MTIF3 (ENSCATG00000007775) #28	GTF3A (ENSCATG00000032361) #29	RASL11A (ENSCATG00000033838) #30	ENSCATG00000032591	ENSCATG00000038452 #31	ENSCATG00000018180	GPR12 (ENSCATG00000018217) #32	WASF3 (ENSCATG00000037570) #33	ENSCATG00000032759	CDK8 (ENSCATG00000021984) #34
Macaca	ANCESTRAL SPECIES	19	ENSGT00950000183120.e.b.a.b ##11	ENSGT00940000155828.o.a	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00940000153783.a	ENSGT00910000147093	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00440000038159.p.b	ENSGT00940000160575 #20	ENSGT00940000153229.A.b	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00390000003643	ENSGT00910000147903	ENSGT00550000075160.x #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000157104 #34	ENSGT00940000158530 #35
Pig-tailed macaque	MODERN SPECIES	165	ENSMNEG00000019179	ST6GAL2 (ENSMNEG00000036708)	ENSMNEG00000022050	SLC5A7 (ENSMNEG00000039266)	SLC7A1 (ENSMNEG00000044453) #14	MTUS2 (ENSMNEG00000039238) #15	SLC46A3 (ENSMNEG00000038996) #16	POMP (ENSMNEG00000031404) #17	ENSMNEG00000043904	ENSMNEG00000028177	FLT1 (ENSMNEG00000032149) #18	PAN3 (ENSMNEG00000032817) #19	ENSMNEG00000043801	FLT3 (ENSMNEG00000032442) #20	URAD (ENSMNEG00000045421)	CDX2 (ENSMNEG00000043440) #22	PDX1 (ENSMNEG00000032095) #23	GSX1 (ENSMNEG00000032682) #24	ENSMNEG00000008630 #26	ENSMNEG00000034652	LNX2 (ENSMNEG00000040860) #27	MTIF3 (ENSMNEG00000032443) #28	GTF3A (ENSMNEG00000043473) #29	RASL11A (ENSMNEG00000033345) #30	ENSMNEG00000034115	ENSMNEG00000039505 #31	GPR12 (ENSMNEG00000010974) #32	WASF3 (ENSMNEG00000028711) #33	CDK8 (ENSMNEG00000031167) #34	RNF6 (ENSMNEG00000000673) #35	ATP8A2 (ENSMNEG00000037319)
Macaca_a	ANCESTRAL SPECIES	19	ENSGT00390000002316 #10	ENSGT00950000183120.e.b.a.b ##11	ENSGT00940000155828.o.a	ENSGT00940000156630 #12	ENSGT00390000004952.b #13	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j #17	ENSGT00910000147093	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00440000038159.p.b	ENSGT00940000160575 #20	ENSGT00940000153229.A.b	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00390000003643	ENSGT00940000158381 #27	ENSGT01100000263493.a.b.a.a.b.a.b.b	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a.m	ENSGT01100000263493.a.b.a.a.b.b.a.b.a.a.a.a.a.b.a	ENSGT00940000153284.a.h.i.a #31	ENSGT00940000164709.a.b.b.b.b.a	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT01100000263539.b.a.a.a.b.b.a.a.a.a.b.a.a.b
Crab-eating macaque	MODERN SPECIES	8	UBE2L5 (ENSMFAG00000045697)	ENSMFAG00000053527	KATNAL1 (ENSMFAG00000053013) #12	UBL3 (ENSMFAG00000044955) #13	SLC7A1 (ENSMFAG00000043457) #14	MTUS2 (ENSMFAG00000032200) #15	SLC46A3 (ENSMFAG00000030072) #16	POMP (ENSMFAG00000025369) #17	ENSMFAG00000039222	FLT1 (ENSMFAG00000035718) #18	PAN3 (ENSMFAG00000025538) #19	ENSMFAG00000063510	ENSMFAG00000052223	FLT3 (ENSMFAG00000044854) #20	URAD (ENSMFAG00000043442)	CDX2 (ENSMFAG00000051158) #22	PDX1 (ENSMFAG00000063371) #23	GSX1 (ENSMFAG00000037158) #24	ENSMFAG00000045264	LNX2 (ENSMFAG00000045245) #27	ENSMFAG00000050995	MTIF3 (ENSMFAG00000045045) #28	GTF3A (ENSMFAG00000044837) #29	RASL11A (ENSMFAG00000044628) #30	ENSMFAG00000053340	ENSMFAG00000062305	USP12 (ENSMFAG00000031734) #31	ENSMFAG00000050832	ENSMFAG00000058696	GPR12 (ENSMFAG00000033581) #32	WASF3 (ENSMFAG00000006706) #33
Rhesus	MODERN SPECIES	8	ENSMMUG00000052770	HMGB1 (ENSMMUG00000046615) ##11	ENSMMUG00000058466	UBE2L5 (ENSMMUG00000008940)	KATNAL1 (ENSMMUG00000004922) #12	UBL3 (ENSMMUG00000003771) #13	SLC7A1 (ENSMMUG00000008661) #14	MTUS2 (ENSMMUG00000008658) #15	SLC46A3 (ENSMMUG00000013721) #16	POMP (ENSMMUG00000058998) #17	ENSMMUG00000063649	FLT1 (ENSMMUG00000021538) #18	PAN3 (ENSMMUG00000022522) #19	FLT3 (ENSMMUG00000016139) #20	URAD (ENSMMUG00000016138)	CDX2 (ENSMMUG00000052070) #22	PDX1 (ENSMMUG00000064615) #23	GSX1 (ENSMMUG00000004507) #24	POLR1D (ENSMMUG00000020386)	LNX2 (ENSMMUG00000058786) #27	ENSMMUG00000059867	MTIF3 (ENSMMUG00000009030) #28	GTF3A (ENSMMUG00000009029) #29	RASL11A (ENSMMUG00000049650) #30	ENSMMUG00000058755	ENSMMUG00000054994	USP12 (ENSMMUG00000021425) #31	ENSMMUG00000050226	ENSMMUG00000057481	GPR12 (ENSMMUG00000060819) #32	WASF3 (ENSMMUG00000005055) #33
Rhinopithecus	ANCESTRAL SPECIES	56	ENSGT00390000004952.b #13	ENSGT00910000148031	ENSGT00940000155349 #14	ENSGT00950000183026.B #15	ENSGT00910000147174	ENSGT00950000183026.A.b ##15	ENSGT00950000183096.a.a.c.b #16	ENSGT00390000010734.j.i #17	ENSGT00940000153889.e.b.a.d.a	ENSGT00910000147093	ENSGT00910000146937	ENSGT00940000158713 #18	ENSGT00390000001504 #19	ENSGT00940000160575 #20	ENSGT00390000002395 #21	ENSGT00940000161261 #22	ENSGT00940000162542 #23	ENSGT00940000154361.A #24	ENSGT00550000075160.x #26	ENSGT00940000158381 #27	ENSGT00390000014424 #28	ENSGT00940000155647 #29	ENSGT00940000161208 #30	ENSGT00950000182922.a.a.a.b.b.a.a.a.m	ENSGT00940000153284.a.h.j #31	ENSGT01060000248564.b.a.b.a #32	ENSGT00950000182962.a.a #33	ENSGT00940000165378.d	ENSGT00940000157104 #34	ENSGT00940000158530 #35	ENSGT00940000157443
Black snub-nosed monkey	MODERN SPECIES	1391		UBL3 (ENSRBIG00000032584) #13	ENSRBIG00000024318	SLC7A1 (ENSRBIG00000030519) #14	MTUS2 (ENSRBIG00000042717) #15	ENSRBIG00000043698	SLC46A3 (ENSRBIG00000039296) #16	ENSRBIG00000028141 #17	ENSRBIG00000040184	ENSRBIG00000017410	ENSRBIG00000034378	FLT1 (ENSRBIG00000036952) #18	PAN3 (ENSRBIG00000036981) #19	FLT3 (ENSRBIG00000042399) #20	ENSRBIG00000030643 #21	CDX2 (ENSRBIG00000038667) #22	PDX1 (ENSRBIG00000039353) #23	GSX1 (ENSRBIG00000032182) #24	ENSRBIG00000036378 #26	LNX2 (ENSRBIG00000028850) #27	MTIF3 (ENSRBIG00000027271) #28	GTF3A (ENSRBIG00000044964) #29	RASL11A (ENSRBIG00000043749) #30	ENSRBIG00000036802	ENSRBIG00000041212 #31	GPR12 (ENSRBIG00000001744) #32	WASF3 (ENSRBIG00000033396) #33	CDK8 (ENSRBIG00000040781) #34	ENSRBIG00000044340	RNF6 (ENSRBIG00000035200) #35	SHISA2 (ENSRBIG00000029204)
Golden snub-nosed monkey	MODERN SPECIES	603					ENSRROG00000029261 ##15	SLC46A3 (ENSRROG00000013197) #16	ENSRROG00000035051 #17	ENSRROG00000028953	ENSRROG00000036924	ENSRROG00000044673	FLT1 (ENSRROG00000044082) #18	PAN3 (ENSRROG00000044835) #19	ENSRROG00000038089	FLT3 (ENSRROG00000032511) #20	URAD (ENSRROG00000032393)	CDX2 (ENSRROG00000036416) #22	PDX1 (ENSRROG00000038796) #23	GSX1 (ENSRROG00000032356) #24
Tarsier	MODERN SPECIES	5212									OPN5 (ENSTSYG00000005962)	ADGRF4 (ENSTSYG00000002483)	ENSTSYG00000002476	CD2AP (ENSTSYG00000002464)	ENSTSYG00000034627	PAN3 (ENSTSYG00000011845) #19	FLT3 (ENSTSYG00000011237) #20	ENSTSYG00000029265 #22