Euarchontoglires	ANCESTRAL SPECIES	21	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00390000003643 #23	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000165049
Euarchontoglires_A	ANCESTRAL SPECIES	21	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00390000003643 #23	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000165049
Glires	ANCESTRAL SPECIES	22	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00390000003643 #23	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j	ENSGT00940000165049
Lagomorpha	ANCESTRAL SPECIES	166								ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00390000003643 #23	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h
Pika	MODERN SPECIES	1637															URAD (ENSOPRG00000003060) #21	CDX2 (ENSOPRG00000003043) #22	ENSOPRG00000003035 #23	LNX2 (ENSOPRG00000003017) #24
Rabbit	MODERN SPECIES	468							SLC7A1 (ENSOCUG00000013493)	ENSOCUG00000030839	ENSOCUG00000013473	SLC46A3 (ENSOCUG00000010129)	POMP (ENSOCUG00000010137)	FLT1 (ENSOCUG00000008523)	PAN3 (ENSOCUG00000008509)	FLT3 (ENSOCUG00000004897)	URAD (ENSOCUG00000026219) #21	CDX2 (ENSOCUG00000004893) #22	PDX1 (ENSOCUG00000004891)	GSX1 (ENSOCUG00000023424)	ENSOCUG00000015706 #23	LNX2 (ENSOCUG00000015683) #24	MTIF3 (ENSOCUG00000011721)	GTF3A (ENSOCUG00000011713)	ENSOCUG00000038419	RASL11A (ENSOCUG00000008121)	ENSOCUG00000002506	USP12 (ENSOCUG00000007088)
Rodentia	ANCESTRAL SPECIES	22	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00390000003643 #23	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j	ENSGT00940000165049
Rodentia_B	ANCESTRAL SPECIES	25	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.b.b	ENSGT00950000182922.a.a.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j
Kangaroo rat	MODERN SPECIES	421	Medag (ENSDORG00000008557)	Alox5ap (ENSDORG00000006041)	Uspl1 (ENSDORG00000007790)	ENSDORG00000027930	Katnal1 (ENSDORG00000012794)	Ubl3 (ENSDORG00000026903)	ENSDORG00000026706	Slc7a1 (ENSDORG00000006086)	ENSDORG00000025782	Slc46a3 (ENSDORG00000012433)	Pomp (ENSDORG00000012432)	Flt1 (ENSDORG00000014729)	Pan3 (ENSDORG00000014727)	Flt3 (ENSDORG00000010727)	Urad (ENSDORG00000025006)	Cdx2 (ENSDORG00000005495) #22	Pdx1 (ENSDORG00000008418)	Gsx1 (ENSDORG00000029182)	Polr1d (ENSDORG00000029155)	Lnx2 (ENSDORG00000013453) #24	ENSDORG00000006081	Gtf3a (ENSDORG00000006079)	Rasl11a (ENSDORG00000026016)	ENSDORG00000002226	ENSDORG00000002224	Usp12 (ENSDORG00000009137)	Gpr12 (ENSDORG00000011141)	Wasf3 (ENSDORG00000003345)	Cdk8 (ENSDORG00000011151)	Rnf6 (ENSDORG00000029431)
Myomorpha	ANCESTRAL SPECIES	46	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j
Muroidea	ANCESTRAL SPECIES	68	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j
Muroidea_A	ANCESTRAL SPECIES	27	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.b.d	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j	ENSGT00950000182958.a.b.b.j.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.a.a.b
Cricetidae	ANCESTRAL SPECIES	27	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.b.d	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j.a	ENSGT00950000182958.a.b.b.j.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.a.a.b
Cricetinae	ANCESTRAL SPECIES	19	ENSGT00940000162967	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.b.d	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j.a	ENSGT00950000182958.a.b.b.j.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.a.a.b.a
Golden Hamster	MODERN SPECIES	762	Medag (ENSMAUG00000009604)	Alox5ap (ENSMAUG00000012262)	ENSMAUG00000013736	ENSMAUG00000017646	Katnal1 (ENSMAUG00000007731)	Ubl3 (ENSMAUG00000016399)	Slc7a1 (ENSMAUG00000000359)	ENSMAUG00000018323	ENSMAUG00000020285	Pomp (ENSMAUG00000006509)	Flt1 (ENSMAUG00000006859)	Pan3 (ENSMAUG00000021155)	Flt3 (ENSMAUG00000011952)	ENSMAUG00000001106	Urad (ENSMAUG00000019946)	Cdx2 (ENSMAUG00000020822) #22	Pdx1 (ENSMAUG00000021082)	Polr1d (ENSMAUG00000001946)	Lnx2 (ENSMAUG00000009457) #24	Mtif3 (ENSMAUG00000011167)	Gtf3a (ENSMAUG00000016253)	Rasl11a (ENSMAUG00000019356)	ENSMAUG00000006957	Usp12 (ENSMAUG00000010310)	ENSMAUG00000010877	Gpr12 (ENSMAUG00000015064)	Rfc3 (ENSMAUG00000016464)
Chinese hamster chok1gshd	MODERN SPECIES	130	ENSCGRG00001025063	Alox5ap (ENSCGRG00001018470)	ENSCGRG00001018342	Katnal1 (ENSCGRG00001024027)	Ubl3 (ENSCGRG00001002093)	Slc7a1 (ENSCGRG00001019393)	Mtus2 (ENSCGRG00001023648)	ENSCGRG00001001206	Slc46a3 (ENSCGRG00001023870)	Pomp (ENSCGRG00001000803)	Flt1 (ENSCGRG00001000764)	Pan3 (ENSCGRG00001024986)	ENSCGRG00001012489	Flt3 (ENSCGRG00001010328)	Urad (ENSCGRG00001021146)	Cdx2 (ENSCGRG00001024259) #22	Pdx1 (ENSCGRG00001024891)	Gsx1 (ENSCGRG00001017641)	Polr1d (ENSCGRG00001021251)	Lnx2 (ENSCGRG00001022751) #24	ENSCGRG00001024532	Mtif3 (ENSCGRG00001024612)	Gtf3a (ENSCGRG00001024969)	Rasl11a (ENSCGRG00001014752)	Rpl21 (ENSCGRG00001007602)	ENSCGRG00001021742	Gpr12 (ENSCGRG00001003285)	Wasf3 (ENSCGRG00001003303)	Cdk8 (ENSCGRG00001010747)	Rnf6 (ENSCGRG00001010459)	ENSCGRG00001020483
Cricetidae_B	ANCESTRAL SPECIES	49	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.b.d	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j.a	ENSGT00940000162113	ENSGT00950000182958.a.b.b.j.a.a.a.b
Prairie vole	MODERN SPECIES	7	Medag (ENSMOCG00000012447)	Alox5ap (ENSMOCG00000018258)	ENSMOCG00000018612	ENSMOCG00000018161	Katnal1 (ENSMOCG00000013914)	Ubl3 (ENSMOCG00000012896)	Slc7a1 (ENSMOCG00000022298)	Mtus2 (ENSMOCG00000013900)	Slc46a3 (ENSMOCG00000007090)	Pomp (ENSMOCG00000006131)	ENSMOCG00000000648	Flt1 (ENSMOCG00000019790)	Pan3 (ENSMOCG00000001443)	Flt3 (ENSMOCG00000015945)	Urad (ENSMOCG00000018154)	Cdx2 (ENSMOCG00000010222) #22	Pdx1 (ENSMOCG00000007886)	Gsx1 (ENSMOCG00000002374)	Polr1d (ENSMOCG00000021288)	Lnx2 (ENSMOCG00000022088) #24	Mtif3 (ENSMOCG00000017226)	Gtf3a (ENSMOCG00000004408)	ENSMOCG00000017124	Rasl11a (ENSMOCG00000000626)	Rpl21 (ENSMOCG00000003487)	Usp12 (ENSMOCG00000001714)	Gpr12 (ENSMOCG00000009890)	ENSMOCG00000017944	Rnf6 (ENSMOCG00000006180)	ENSMOCG00000021837	ENSMOCG00000014918
Northern American deer mouse	MODERN SPECIES	15	Medag (ENSPEMG00000000331)	Alox5ap (ENSPEMG00000000576)	Uspl1 (ENSPEMG00000003660)	ENSPEMG00000000834	Katnal1 (ENSPEMG00000009164)	Ubl3 (ENSPEMG00000010779)	Slc7a1 (ENSPEMG00000006808)	Mtus2 (ENSPEMG00000011863)	ENSPEMG00000024696	Slc46a3 (ENSPEMG00000014019)	ENSPEMG00000014341	Flt1 (ENSPEMG00000019000)	Pan3 (ENSPEMG00000008992)	Flt3 (ENSPEMG00000012278)	Urad (ENSPEMG00000025423)	Cdx2 (ENSPEMG00000000632) #22	Pdx1 (ENSPEMG00000001176)	Gsx1 (ENSPEMG00000004992)	Polr1d (ENSPEMG00000006336)	Lnx2 (ENSPEMG00000008280) #24	Mtif3 (ENSPEMG00000000930)	Gtf3a (ENSPEMG00000003201)	Rasl11a (ENSPEMG00000004475)	Rpl21 (ENSPEMG00000006041)	Usp12 (ENSPEMG00000008193)	Gpr12 (ENSPEMG00000010665)	ENSPEMG00000030961	Wasf3 (ENSPEMG00000011510)	Cdk8 (ENSPEMG00000012706)	ENSPEMG00000015454	ENSPEMG00000027927
Murinae	ANCESTRAL SPECIES	28	ENSGT00390000018451	ENSGT00960000191336	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.b.c.c.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j	ENSGT00950000182958.a.b.b.j.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.a.a.b
Mus	ANCESTRAL SPECIES	17	ENSGT00390000018451	ENSGT00960000191336	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.b.c.c.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j	ENSGT00950000182958.a.b.b.j.a.a.a.a.c	ENSGT00950000182958.a.b.b.j.a.a.a.b
Mus_A	ANCESTRAL SPECIES	6	ENSGT00390000018451	ENSGT00960000191336	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.b.c.c.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j	ENSGT00950000182958.a.b.b.j.a.a.a.a.c	ENSGT00950000182958.a.b.b.j.a.a.a.b
Mus_B	ANCESTRAL SPECIES	4	ENSGT00390000018451	ENSGT00960000191336	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.b.c.c.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j	ENSGT00950000182958.a.b.b.j.a.a.a.a.c.a.a	ENSGT00950000182958.a.b.b.j.a.a.a.b.i.b
Mouse	MODERN SPECIES	14	Tex26 (ENSMUSG00000029660)	Medag (ENSMUSG00000029659)	Alox5ap (ENSMUSG00000060063)	Uspl1 (ENSMUSG00000041264)	Hmgb1 (ENSMUSG00000066551)	Katnal1 (ENSMUSG00000041298)	Ubl3 (ENSMUSG00000001687)	Slc7a1 (ENSMUSG00000041313)	Mtus2 (ENSMUSG00000029651)	Slc46a3 (ENSMUSG00000029650)	Pomp (ENSMUSG00000029649)	Flt1 (ENSMUSG00000029648)	Pan3 (ENSMUSG00000029647)	Flt3 (ENSMUSG00000042817)	Urad (ENSMUSG00000075543)	Cdx2 (ENSMUSG00000029646) #22	Pdx1 (ENSMUSG00000029644)	Gsx1 (ENSMUSG00000053129)	Polr1d (ENSMUSG00000029642)	Lnx2 (ENSMUSG00000016520) #24	Mtif3 (ENSMUSG00000016510)	Gtf3a (ENSMUSG00000016503)	Rasl11a (ENSMUSG00000029641)	Rpl21 (ENSMUSG00000041453)	Usp12 (ENSMUSG00000029640)	Gpr12 (ENSMUSG00000041468)	Gm3415 (ENSMUSG00000095557)	Gm3409 (ENSMUSG00000096664)	Gm3404 (ENSMUSG00000079091)	Gm3402 (ENSMUSG00000041505)	4930449I24Rik (ENSMUSG00000079093)
Mus_C	ANCESTRAL SPECIES	4	ENSGT00390000018451	ENSGT00960000191336	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.b.c.c.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j	ENSGT00940000155423.e.b	ENSGT00940000162113
Steppe mouse	MODERN SPECIES	3364	Alox5ap (ENSMSIG00000023243)	Uspl1 (ENSMSIG00000023285)	ENSMSIG00000023332	Katnal1 (ENSMSIG00000023377)	Ubl3 (ENSMSIG00000023402)	Slc7a1 (ENSMSIG00000023421)	Mtus2 (ENSMSIG00000023484)	Slc46a3 (ENSMSIG00000023578)	Pomp (ENSMSIG00000023598)	ENSMSIG00000023628	Flt1 (ENSMSIG00000023642)	Pan3 (ENSMSIG00000023687)	Flt3 (ENSMSIG00000023851)	ENSMSIG00000023930	ENSMSIG00000023941 #21	Cdx2 (ENSMSIG00000023947) #22	Pdx1 (ENSMSIG00000023956)	Gsx1 (ENSMSIG00000023969)	ENSMSIG00000023978	Lnx2 (ENSMSIG00000023999) #24	Mtif3 (ENSMSIG00000024005)	Gtf3a (ENSMSIG00000024026)	Rasl11a (ENSMSIG00000024039)	ENSMSIG00000024049	Usp12 (ENSMSIG00000024096)	ENSMSIG00000024119	Gpr12 (ENSMSIG00000024129)	Wasf3 (ENSMSIG00000024134)	Cdk8 (ENSMSIG00000024179)	Rnf6 (ENSMSIG00000024340)	ENSMSIG00000024355
spretus	MODERN SPECIES	14	Medag (MGP_SPRETEiJ_G0029050)	Alox5ap (MGP_SPRETEiJ_G0029049)	Uspl1 (MGP_SPRETEiJ_G0029048)	MGP_SPRETEiJ_G0029047	MGP_SPRETEiJ_G0029046	MGP_SPRETEiJ_G0029045	Ubl3 (MGP_SPRETEiJ_G0029044)	Slc7a1 (MGP_SPRETEiJ_G0029043)	Mtus2 (MGP_SPRETEiJ_G0029042)	Slc46a3 (MGP_SPRETEiJ_G0029041)	Pomp (MGP_SPRETEiJ_G0029040)	Flt1 (MGP_SPRETEiJ_G0029039)	Pan3 (MGP_SPRETEiJ_G0029038)	Flt3 (MGP_SPRETEiJ_G0029037)	Urad (MGP_SPRETEiJ_G0029036)	Cdx2 (MGP_SPRETEiJ_G0029035) #22	Pdx1 (MGP_SPRETEiJ_G0029034)	Gsx1 (MGP_SPRETEiJ_G0029033)	Polr1d (MGP_SPRETEiJ_G0029032)	Lnx2 (MGP_SPRETEiJ_G0029031) #24	Mtif3 (MGP_SPRETEiJ_G0029030)	Gtf3a (MGP_SPRETEiJ_G0029029)	Rasl11a (MGP_SPRETEiJ_G0029028)	MGP_SPRETEiJ_G0029027	Usp12 (MGP_SPRETEiJ_G0029026)	Gpr12 (MGP_SPRETEiJ_G0029025)	Wasf3 (MGP_SPRETEiJ_G0029024)	Cdk8 (MGP_SPRETEiJ_G0029023)	Rnf6 (MGP_SPRETEiJ_G0029022)	MGP_SPRETEiJ_G0029021	MGP_SPRETEiJ_G0029020
Ryukyu mouse	MODERN SPECIES	14	Medag (MGP_CAROLIEiJ_G0028052)	MGP_CAROLIEiJ_G0028051	Uspl1 (MGP_CAROLIEiJ_G0028050)	MGP_CAROLIEiJ_G0028049	MGP_CAROLIEiJ_G0028048	MGP_CAROLIEiJ_G0028047	Ubl3 (MGP_CAROLIEiJ_G0028046)	Slc7a1 (MGP_CAROLIEiJ_G0028045)	Mtus2 (MGP_CAROLIEiJ_G0028044)	Slc46a3 (MGP_CAROLIEiJ_G0028043)	Pomp (MGP_CAROLIEiJ_G0028042)	Flt1 (MGP_CAROLIEiJ_G0028041)	Pan3 (MGP_CAROLIEiJ_G0028040)	Flt3 (MGP_CAROLIEiJ_G0028039)	Urad (MGP_CAROLIEiJ_G0028038)	Cdx2 (MGP_CAROLIEiJ_G0028037) #22	Pdx1 (MGP_CAROLIEiJ_G0028036)	Gsx1 (MGP_CAROLIEiJ_G0028035)	Polr1d (MGP_CAROLIEiJ_G0028034)	Lnx2 (MGP_CAROLIEiJ_G0028033) #24	Mtif3 (MGP_CAROLIEiJ_G0028032)	Gtf3a (MGP_CAROLIEiJ_G0028031)	Rasl11a (MGP_CAROLIEiJ_G0028030)	Rpl21 (MGP_CAROLIEiJ_G0028029)	Usp12 (MGP_CAROLIEiJ_G0028028)	Gpr12 (MGP_CAROLIEiJ_G0028027)	Wasf3 (MGP_CAROLIEiJ_G0028026)	Cdk8 (MGP_CAROLIEiJ_G0028025)	Rnf6 (MGP_CAROLIEiJ_G0028024)	MGP_CAROLIEiJ_G0028023	MGP_CAROLIEiJ_G0028021
Shrew mouse	MODERN SPECIES	15	Medag (MGP_PahariEiJ_G0024618)	Alox5ap (MGP_PahariEiJ_G0024617)	Uspl1 (MGP_PahariEiJ_G0024616)	MGP_PahariEiJ_G0024615	MGP_PahariEiJ_G0024614	MGP_PahariEiJ_G0024613	Ubl3 (MGP_PahariEiJ_G0024612)	Slc7a1 (MGP_PahariEiJ_G0024611)	Mtus2 (MGP_PahariEiJ_G0024610)	Slc46a3 (MGP_PahariEiJ_G0024609)	MGP_PahariEiJ_G0024608	Flt1 (MGP_PahariEiJ_G0024607)	Pan3 (MGP_PahariEiJ_G0024606)	Flt3 (MGP_PahariEiJ_G0024605)	Urad (MGP_PahariEiJ_G0024604)	Cdx2 (MGP_PahariEiJ_G0024603) #22	Pdx1 (MGP_PahariEiJ_G0024602)	Gsx1 (MGP_PahariEiJ_G0024601)	Polr1d (MGP_PahariEiJ_G0024600)	Lnx2 (MGP_PahariEiJ_G0024599) #24	Mtif3 (MGP_PahariEiJ_G0024598)	Gtf3a (MGP_PahariEiJ_G0024597)	Rasl11a (MGP_PahariEiJ_G0024596)	MGP_PahariEiJ_G0024595	Usp12 (MGP_PahariEiJ_G0024594)	Gpr12 (MGP_PahariEiJ_G0024593)	Wasf3 (MGP_PahariEiJ_G0024592)	Cdk8 (MGP_PahariEiJ_G0024591)	Rnf6 (MGP_PahariEiJ_G0024590)	MGP_PahariEiJ_G0024588	MGP_PahariEiJ_G0024589
Rat	MODERN SPECIES	3	Medag (ENSRNOG00000000906)	AABR07035203.1 (ENSRNOG00000060198)	Alox5ap (ENSRNOG00000000907)	Uspl1 (ENSRNOG00000000909)	AABR07035218.1 (ENSRNOG00000029813)	Rpl35a-ps6 (ENSRNOG00000069961)	Katnal1 (ENSRNOG00000047618)	Slc7a1 (ENSRNOG00000000924)	Mtus2 (ENSRNOG00000032410)	Slc46a3 (ENSRNOG00000000937)	Pomp (ENSRNOG00000049229)	Flt1 (ENSRNOG00000000940)	Pan3 (ENSRNOG00000000942)	Flt3 (ENSRNOG00000054764)	Urad (ENSRNOG00000050360)	Cdx2 (ENSRNOG00000032759) #22	Pdx1 (ENSRNOG00000046458)	Gsx1 (ENSRNOG00000000952)	Polr1d (ENSRNOG00000000954)	Lnx2 (ENSRNOG00000000955) #24	Mtif3 (ENSRNOG00000070811)	Gtf3a (ENSRNOG00000050016)	Rasl11a (ENSRNOG00000000956)	Rpl21 (ENSRNOG00000000957)	Usp12 (ENSRNOG00000033411)	Gpr12 (ENSRNOG00000039832)	Wasf3 (ENSRNOG00000048898)	LOC120095889 (ENSRNOG00000050264)	LOC684427 (ENSRNOG00000069792)	AABR07035338.1 (ENSRNOG00000039819)	Rnf6 (ENSRNOG00000000968)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1878	Medag (ENSNGAG00000021713)	Alox5ap (ENSNGAG00000010455)	Uspl1 (ENSNGAG00000021450)	ENSNGAG00000020735	Katnal1 (ENSNGAG00000018344)	Ubl3 (ENSNGAG00000021531)	Slc7a1 (ENSNGAG00000011095)	ENSNGAG00000023043	ENSNGAG00000011243	ENSNGAG00000022087	Slc46a3 (ENSNGAG00000023221)	ENSNGAG00000019389	Flt1 (ENSNGAG00000022615)	Pan3 (ENSNGAG00000005671)	Flt3 (ENSNGAG00000022203)	Cdx2 (ENSNGAG00000019299) #22	Pdx1 (ENSNGAG00000024275)	ENSNGAG00000011527	Gsx1 (ENSNGAG00000013964)	ENSNGAG00000020643	ENSNGAG00000019459	Polr1d (ENSNGAG00000006014)	Lnx2 (ENSNGAG00000010972) #24	Mtif3 (ENSNGAG00000022911)	Gtf3a (ENSNGAG00000023691)	Rasl11a (ENSNGAG00000021721)	ENSNGAG00000022375	ENSNGAG00000012493	Usp12 (ENSNGAG00000023867)	ENSNGAG00000011492
Lesser Egyptian jerboa	MODERN SPECIES	73	Tex26 (ENSJJAG00000007098)	Medag (ENSJJAG00000017396)	Alox5ap (ENSJJAG00000004614)	ENSJJAG00000014544	ENSJJAG00000000696	Katnal1 (ENSJJAG00000011429)	Ubl3 (ENSJJAG00000016514)	Slc7a1 (ENSJJAG00000022034)	ENSJJAG00000008307	Slc46a3 (ENSJJAG00000015117)	Pomp (ENSJJAG00000014017)	Flt1 (ENSJJAG00000009276)	Pan3 (ENSJJAG00000013560)	Flt3 (ENSJJAG00000004796)	Urad (ENSJJAG00000022682)	Cdx2 (ENSJJAG00000010229) #22	Pdx1 (ENSJJAG00000017468)	Gsx1 (ENSJJAG00000021574)	ENSJJAG00000009076	ENSJJAG00000022671	Lnx2 (ENSJJAG00000014998) #24	Mtif3 (ENSJJAG00000013006)	Gtf3a (ENSJJAG00000011501)	Rasl11a (ENSJJAG00000020910)	Usp12 (ENSJJAG00000019341)	Gpr12 (ENSJJAG00000012507)	Wasf3 (ENSJJAG00000018294)	Cdk8 (ENSJJAG00000009532)	Rnf6 (ENSJJAG00000023994)	Vstm2b (ENSJJAG00000022517)	Pop4 (ENSJJAG00000013376)
Rodentia_A	ANCESTRAL SPECIES	22	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00390000003643 #23	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.b.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j	ENSGT00940000165049
Sciuridae	ANCESTRAL SPECIES	34	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.b.b	ENSGT00940000153284.a.g.a	ENSGT00950000182922.a.a.a.b.a.a.b.a	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a
Marmotini	ANCESTRAL SPECIES	29	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.b.b	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.b.b	ENSGT00940000153284.a.g.a	ENSGT00950000182922.a.a.a.b.a.a.b.a	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00940000158453.a	ENSGT01050000244955.a.a	ENSGT01050000244897.a.b.b.b
Alpin marmot	MODERN SPECIES	13	TEX26 (ENSMMMG00000021931)	MEDAG (ENSMMMG00000021928)	ALOX5AP (ENSMMMG00000021924)	ENSMMMG00000021912	ENSMMMG00000021875	KATNAL1 (ENSMMMG00000021861)	UBL3 (ENSMMMG00000021836)	SLC7A1 (ENSMMMG00000021811)	ENSMMMG00000021777	SLC46A3 (ENSMMMG00000021759)	POMP (ENSMMMG00000021745)	FLT1 (ENSMMMG00000021722)	PAN3 (ENSMMMG00000021592)	FLT3 (ENSMMMG00000021498)	ENSMMMG00000021485	CDX2 (ENSMMMG00000021482) #22	GSX1 (ENSMMMG00000021480)	POLR1D (ENSMMMG00000021469)	LNX2 (ENSMMMG00000021459) #24	MTIF3 (ENSMMMG00000021440)	GTF3A (ENSMMMG00000021436)	RASL11A (ENSMMMG00000021424)	RPL21 (ENSMMMG00000021415)	ENSMMMG00000021402	ENSMMMG00000021396	GPR12 (ENSMMMG00000021388)	SLITRK5 (ENSMMMG00000021362)	ENSMMMG00000021355	GPC5 (ENSMMMG00000021337)	GPC6 (ENSMMMG00000021294)	DCT (ENSMMMG00000021259)
Marmotini_b	ANCESTRAL SPECIES	39	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.a	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00940000158453.a	ENSGT01050000244955.a.a	ENSGT01050000244897.a.b.b.b	ENSGT00940000156856	ENSGT00940000159196
Arctic ground squirrel	MODERN SPECIES	58	MEDAG (ENSUPAG00010000596)	ALOX5AP (ENSUPAG00010000582)	USPL1 (ENSUPAG00010000537)	ENSUPAG00010000514	KATNAL1 (ENSUPAG00010000483)	UBL3 (ENSUPAG00010000449)	SLC7A1 (ENSUPAG00010000429)	ENSUPAG00010000338	ENSUPAG00010000323	SLC46A3 (ENSUPAG00010000307)	POMP (ENSUPAG00010000279)	FLT1 (ENSUPAG00010000212)	PAN3 (ENSUPAG00010000039)	FLT3 (ENSUPAG00010018139)	ENSUPAG00010018133	CDX2 (ENSUPAG00010018125) #22	PDX1 (ENSUPAG00010018122)	GSX1 (ENSUPAG00010018112)	POLR1D (ENSUPAG00010018107)	LNX2 (ENSUPAG00010018096) #24	MTIF3 (ENSUPAG00010018090)	GTF3A (ENSUPAG00010018082)	RASL11A (ENSUPAG00010018073)	ENSUPAG00010018061	USP12 (ENSUPAG00010018049)	GPR12 (ENSUPAG00010018043)	SLITRK5 (ENSUPAG00010018031)
Squirrel	MODERN SPECIES	72	ENSSTOG00000020892	MEDAG (ENSSTOG00000003534)	ALOX5AP (ENSSTOG00000010915)	USPL1 (ENSSTOG00000028023)	ENSSTOG00000000443	KATNAL1 (ENSSTOG00000008802)	UBL3 (ENSSTOG00000012777)	SLC7A1 (ENSSTOG00000012771)	ENSSTOG00000022794	SLC46A3 (ENSSTOG00000013694)	POMP (ENSSTOG00000013687)	FLT1 (ENSSTOG00000021178)	PAN3 (ENSSTOG00000009453)	FLT3 (ENSSTOG00000002925)	ENSSTOG00000028014	ENSSTOG00000002918 #22	PDX1 (ENSSTOG00000028173)	GSX1 (ENSSTOG00000029234)	POLR1D (ENSSTOG00000013877)	LNX2 (ENSSTOG00000013869) #24	MTIF3 (ENSSTOG00000013866)	GTF3A (ENSSTOG00000013853)	RASL11A (ENSSTOG00000023879)	ENSSTOG00000033637	USP12 (ENSSTOG00000011364)	ENSSTOG00000023839	GPR12 (ENSSTOG00000011362)	SLITRK5 (ENSSTOG00000022257)	ENSSTOG00000029870	GPC6 (ENSSTOG00000025649)	DCT (ENSSTOG00000010422)
Eurasian red squirrel	MODERN SPECIES	13	TEX26 (ENSSVLG00005022083)	MEDAG (ENSSVLG00005022152)	ALOX5AP (ENSSVLG00005022177)	USPL1 (ENSSVLG00005022232)	ENSSVLG00005022302	KATNAL1 (ENSSVLG00005022343)	UBL3 (ENSSVLG00005022374)	SLC7A1 (ENSSVLG00005022416)	MTUS2 (ENSSVLG00005022484)	SLC46A3 (ENSSVLG00005022784)	POMP (ENSSVLG00005022839)	FLT1 (ENSSVLG00005022893)	PAN3 (ENSSVLG00005022998)	FLT3 (ENSSVLG00005023095)	URAD (ENSSVLG00005023233) #21	CDX2 (ENSSVLG00005023249) #22	PDX1 (ENSSVLG00005023276)	GSX1 (ENSSVLG00005023295)	POLR1D (ENSSVLG00005023318)	LNX2 (ENSSVLG00005023366) #24	MTIF3 (ENSSVLG00005023396)	GTF3A (ENSSVLG00005023413)	RASL11A (ENSSVLG00005023466)	ENSSVLG00005000213	ENSSVLG00005000350	GPR12 (ENSSVLG00005000385)	ENSSVLG00005000420	ENSSVLG00005000440	SLITRK5 (ENSSVLG00005000517)	ENSSVLG00005000527	ENSSVLG00005000550
Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j.p	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00390000003643 #23	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647.c	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.b.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j	ENSGT00940000165049
Naked mole-rat female	MODERN SPECIES	2	USPL1 (ENSHGLG00000036213)	ENSHGLG00000003352	KATNAL1 (ENSHGLG00000003538)	UBL3 (ENSHGLG00000040587)	ENSHGLG00000033244	ENSHGLG00000019220	ENSHGLG00000013589	ENSHGLG00000012383	ENSHGLG00000039882	SLC46A3 (ENSHGLG00000007999)	ENSHGLG00000008991	FLT1 (ENSHGLG00000003643)	PAN3 (ENSHGLG00000018782)	FLT3 (ENSHGLG00000005717)	URAD (ENSHGLG00000008479) #21	CDX2 (ENSHGLG00000009166) #22	PDX1 (ENSHGLG00000010243)	GSX1 (ENSHGLG00000039858)	ENSHGLG00000003202 #23	POLR1D (ENSHGLG00000039229)	LNX2 (ENSHGLG00000003410) #24	MTIF3 (ENSHGLG00000003959)	ENSHGLG00000004173	RASL11A (ENSHGLG00000005304)	ENSHGLG00000005660	ENSHGLG00000006711	GPR12 (ENSHGLG00000042343)	WASF3 (ENSHGLG00000006350)	ENSHGLG00000006446	CDK8 (ENSHGLG00000007563)	RNF6 (ENSHGLG00000008194)
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j.p	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00390000003643 #23	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647.c	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.b.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j	ENSGT00940000165049
Guinea pig	MODERN SPECIES	6	ENSCPOG00000035490	ENSCPOG00000007441	MEDAG (ENSCPOG00000003921)	ALOX5AP (ENSCPOG00000032690)	USPL1 (ENSCPOG00000009937)	HMGB1 (ENSCPOG00000031835)	KATNAL1 (ENSCPOG00000000804)	UBL3 (ENSCPOG00000036242)	SLC7A1 (ENSCPOG00000005590)	ENSCPOG00000005581	SLC46A3 (ENSCPOG00000015460)	POMP (ENSCPOG00000001710)	FLT1 (ENSCPOG00000013357)	PAN3 (ENSCPOG00000013349)	FLT3 (ENSCPOG00000007285)	CDX2 (ENSCPOG00000007276) #22	PDX1 (ENSCPOG00000024534)	ENSCPOG00000026854	ENSCPOG00000033461 #23	LNX2 (ENSCPOG00000010152) #24	MTIF3 (ENSCPOG00000010148)	GTF3A (ENSCPOG00000010143)	RASL11A (ENSCPOG00000031264)	ENSCPOG00000008784	USP12 (ENSCPOG00000005241)	ENSCPOG00000020112	WASF3 (ENSCPOG00000010156)	CDK8 (ENSCPOG00000040435)	RNF6 (ENSCPOG00000009120)	SHISA2 (ENSCPOG00000009049)	ATP8A2 (ENSCPOG00000032003)
Hystricomorpha_b	ANCESTRAL SPECIES	48	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j.p	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00390000003643 #23	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647.c	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530.j	ENSGT00940000165049
Degu	MODERN SPECIES	79	ENSODEG00000006120	KATNAL1 (ENSODEG00000005926)	UBL3 (ENSODEG00000005571)	ENSODEG00000005438	SLC7A1 (ENSODEG00000005306)	ENSODEG00000005871	ENSODEG00000006635	SLC46A3 (ENSODEG00000006238)	ENSODEG00000005569	ENSODEG00000005111	ENSODEG00000006274	ENSODEG00000006016	PAN3 (ENSODEG00000005038)	FLT3 (ENSODEG00000007884)	ENSODEG00000007620	CDX2 (ENSODEG00000007340) #22	PDX1 (ENSODEG00000005235)	ENSODEG00000019134	GSX1 (ENSODEG00000005135)	ENSODEG00000006454	ENSODEG00000005294	LNX2 (ENSODEG00000006222) #24	MTIF3 (ENSODEG00000006818)	GTF3A (ENSODEG00000006725)	RASL11A (ENSODEG00000005775)	ENSODEG00000005022	USP12 (ENSODEG00000006744)	GPR12 (ENSODEG00000006388)	WASF3 (ENSODEG00000005353)	ENSODEG00000005140	ENSODEG00000006456
Long-tailed chinchilla	MODERN SPECIES	204											SLC46A3 (ENSCLAG00000009379)	POMP (ENSCLAG00000008609)	FLT1 (ENSCLAG00000008187)	PAN3 (ENSCLAG00000007575)	FLT3 (ENSCLAG00000007093)	CDX2 (ENSCLAG00000006810) #22	PDX1 (ENSCLAG00000006652)	GSX1 (ENSCLAG00000004357)	ENSCLAG00000004320 #23	POLR1D (ENSCLAG00000017623)	LNX2 (ENSCLAG00000004148) #24	MTIF3 (ENSCLAG00000004080)	GTF3A (ENSCLAG00000003912)	RASL11A (ENSCLAG00000003867)	Rpl21 (ENSCLAG00000003656)	USP12 (ENSCLAG00000003543)	GPR12 (ENSCLAG00000003409)	WASF3 (ENSCLAG00000003372)	CDK8 (ENSCLAG00000003311)	RNF6 (ENSCLAG00000003242)	ENSCLAG00000003030
Tree shrew	MODERN SPECIES	7903															URAD (ENSTBEG00000005892) #21	CDX2 (ENSTBEG00000006155) #22
Primates	ANCESTRAL SPECIES	29	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000165049	ENSGT00940000157443
Strepsirrhini	ANCESTRAL SPECIES	41	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00950000183120.e.b.a.a.b.b.a.b.b	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00950000182922.a.a.a.b.b.a.a.a	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000165049
Lemuriformes	ANCESTRAL SPECIES	18	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.b.a.a.a	ENSGT00940000153284.a.h	ENSGT00940000159187	ENSGT00390000016695	ENSGT00940000153259.a.a.b.d	ENSGT00950000183171.B	ENSGT00730000111659	ENSGT00940000154936.qb
Lemuriformes_a	ANCESTRAL SPECIES	218														ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00390000003643 #23	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00950000182922.a.a.a.b.b.a.a.a	ENSGT00940000153284.a.h
Coquerels sifaka	MODERN SPECIES	436														FLT3 (ENSPCOG00000024372)	ENSPCOG00000024369	CDX2 (ENSPCOG00000017128) #22	PDX1 (ENSPCOG00000006631)	GSX1 (ENSPCOG00000018002)	POLR1D (ENSPCOG00000028175)	LNX2 (ENSPCOG00000027388) #24	MTIF3 (ENSPCOG00000025631)	GTF3A (ENSPCOG00000016742)	RASL11A (ENSPCOG00000009447)	ENSPCOG00000024417	USP12 (ENSPCOG00000027540)	SGCG (ENSPCOG00000024563)	SACS (ENSPCOG00000014915)	TNFRSF19 (ENSPCOG00000024171)	MIPEP (ENSPCOG00000022864)	ENSPCOG00000020115	ENSPCOG00000010750
Greater bamboo lemur	MODERN SPECIES	742														FLT3 (ENSPSMG00000023610)	URAD (ENSPSMG00000023629) #21	CDX2 (ENSPSMG00000023632) #22	PDX1 (ENSPSMG00000023637)	GSX1 (ENSPSMG00000023639)	ENSPSMG00000023644 #23	LNX2 (ENSPSMG00000023653) #24	MTIF3 (ENSPSMG00000023658)	GTF3A (ENSPSMG00000023668)	RASL11A (ENSPSMG00000023672)	ENSPSMG00000023677	ENSPSMG00000023686	USP12 (ENSPSMG00000023737)
Mouse lemur	MODERN SPECIES	4	ALOX5AP (ENSMICG00000001953)	USPL1 (ENSMICG00000045622)	ENSMICG00000007144	KATNAL1 (ENSMICG00000004250)	UBL3 (ENSMICG00000033508)	SLC7A1 (ENSMICG00000016312)	ENSMICG00000032922	ENSMICG00000016299	SLC46A3 (ENSMICG00000016295)	POMP (ENSMICG00000032068)	FLT1 (ENSMICG00000016251)	PAN3 (ENSMICG00000016237)	ENSMICG00000027752	FLT3 (ENSMICG00000016201)	ENSMICG00000032881	CDX2 (ENSMICG00000031345) #22	PDX1 (ENSMICG00000043487)	GSX1 (ENSMICG00000044124)	ENSMICG00000016883	LNX2 (ENSMICG00000016873) #24	MTIF3 (ENSMICG00000014777)	GTF3A (ENSMICG00000014763)	RASL11A (ENSMICG00000029724)	ENSMICG00000006269	ENSMICG00000028275	SGCG (ENSMICG00000038162)	SACS (ENSMICG00000034895)	ENSMICG00000042745	MIPEP (ENSMICG00000036068)	ENSMICG00000047845	ENSMICG00000045668
Bushbaby	MODERN SPECIES	235	USPL1 (ENSOGAG00000015490)	ENSOGAG00000026314	ENSOGAG00000030054	ENSOGAG00000003205	KATNAL1 (ENSOGAG00000011308)	UBL3 (ENSOGAG00000004035)	SLC7A1 (ENSOGAG00000010813)	MTUS2 (ENSOGAG00000010807)	SLC46A3 (ENSOGAG00000006042)	POMP (ENSOGAG00000006044)	FLT1 (ENSOGAG00000014611)	PAN3 (ENSOGAG00000014604)	ENSOGAG00000031357	FLT3 (ENSOGAG00000016694)	ENSOGAG00000016692	CDX2 (ENSOGAG00000026117) #22	PDX1 (ENSOGAG00000016688)	GSX1 (ENSOGAG00000011242)	POLR1D (ENSOGAG00000014601)	LNX2 (ENSOGAG00000014599) #24	MTIF3 (ENSOGAG00000014597)	GTF3A (ENSOGAG00000014589)	RASL11A (ENSOGAG00000008177)	ENSOGAG00000008181	ENSOGAG00000030191	USP12 (ENSOGAG00000030639)	GPR12 (ENSOGAG00000006144)	WASF3 (ENSOGAG00000006728)	ENSOGAG00000026985	CDK8 (ENSOGAG00000006569)	RNF6 (ENSOGAG00000024893)
Haplorrhini	ANCESTRAL SPECIES	43	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.b.b	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00940000160575	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000157443	ENSGT00940000157332
Simiiformes	ANCESTRAL SPECIES	22	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00940000160575	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000157443	ENSGT00940000157332
Platyrrhini	ANCESTRAL SPECIES	23	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.b.b	ENSGT00950000183120.e.b.b.b	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00950000182965.a.b.b.b.g.a	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.b.a.a.a	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000157443	ENSGT00940000157332
Cebidae	ANCESTRAL SPECIES	26	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.b.b	ENSGT00950000183120.e.b.b.b	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00950000182965.a.b.b.b.g.a	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.b.a.a.a	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000157443	ENSGT00940000157332
Cebidae_a	ANCESTRAL SPECIES	28	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.b.b	ENSGT00940000156630	ENSGT00390000011417.k.d	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00950000182965.a.b.b.b.g.a	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.b.a.a.a	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000157443	ENSGT00940000157332
Capuchin	MODERN SPECIES	103	ENSCCAG00000032047	ENSCCAG00000028011	KATNA1 (ENSCCAG00000029984)	UBL3 (ENSCCAG00000021780)	CIAPIN1 (ENSCCAG00000020425)	SLC7A1 (ENSCCAG00000000822)	MTUS2 (ENSCCAG00000025313)	SLC46A3 (ENSCCAG00000025858)	POMP (ENSCCAG00000027871)	FLT1 (ENSCCAG00000035784)	ENSCCAG00000000468	PAN3 (ENSCCAG00000021218)	ENSCCAG00000027785	FLT3 (ENSCCAG00000022587)	ENSCCAG00000029430	CDX2 (ENSCCAG00000025801) #22	PDX1 (ENSCCAG00000036295)	GSX1 (ENSCCAG00000025929)	ENSCCAG00000021349	LNX2 (ENSCCAG00000020368) #24	ENSCCAG00000026568	MTIF3 (ENSCCAG00000036048)	GTF3A (ENSCCAG00000029730)	RASL11A (ENSCCAG00000021842)	ENSCCAG00000031101	USP12 (ENSCCAG00000023369)	ENSCCAG00000021328	GPR12 (ENSCCAG00000020040)	WASF3 (ENSCCAG00000029799)	CDK8 (ENSCCAG00000037833)	RNF6 (ENSCCAG00000037182)
Bolivian squirrel monkey	MODERN SPECIES	42	ENSSBOG00000020013	UBL3 (ENSSBOG00000009211)	ENSSBOG00000028866	SLC7A1 (ENSSBOG00000020061)	MTUS2 (ENSSBOG00000026505)	ENSSBOG00000019071	SLC46A3 (ENSSBOG00000025396)	POMP (ENSSBOG00000032229)	FLT1 (ENSSBOG00000015766)	ENSSBOG00000020899	PAN3 (ENSSBOG00000020298)	ENSSBOG00000032374	FLT3 (ENSSBOG00000026666)	ENSSBOG00000020835	ENSSBOG00000027743	CDX2 (ENSSBOG00000031573) #22	PDX1 (ENSSBOG00000031436)	GSX1 (ENSSBOG00000026103)	ENSSBOG00000015416	ENSSBOG00000028482	ENSSBOG00000014497	LNX2 (ENSSBOG00000025148) #24	MTIF3 (ENSSBOG00000030469)	GTF3A (ENSSBOG00000002098)	RASL11A (ENSSBOG00000025363)	ENSSBOG00000031441	ENSSBOG00000023626	GPR12 (ENSSBOG00000015914)	WASF3 (ENSSBOG00000025202)	CDK8 (ENSSBOG00000031790)	RNF6 (ENSSBOG00000022531)
Marmoset	MODERN SPECIES	17	ENSCJAG00000079039	KATNAL1 (ENSCJAG00000021612)	UBL3 (ENSCJAG00000019517)	ENSCJAG00000058143	SLC7A1 (ENSCJAG00000019515)	ENSCJAG00000072801	MTUS2 (ENSCJAG00000019500)	SLC46A3 (ENSCJAG00000019491)	POMP (ENSCJAG00000019473)	ENSCJAG00000080582	FLT1 (ENSCJAG00000019447)	PAN3 (ENSCJAG00000019421)	ENSCJAG00000073991	FLT3 (ENSCJAG00000019405)	ENSCJAG00000019404	CDX2 (ENSCJAG00000019398) #22	ENSCJAG00000076582	PDX1 (ENSCJAG00000078316)	GSX1 (ENSCJAG00000080181)	POLR1D (ENSCJAG00000044669)	LNX2 (ENSCJAG00000019379) #24	MTIF3 (ENSCJAG00000019378)	GTF3A (ENSCJAG00000077697)	RASL11A (ENSCJAG00000019369)	ENSCJAG00000044684	ENSCJAG00000069611	ENSCJAG00000073678	USP12 (ENSCJAG00000019344)	ENSCJAG00000086732	GPR12 (ENSCJAG00000019338)	WASF3 (ENSCJAG00000019325)
Mas night monkey	MODERN SPECIES	331									ENSANAG00000035277	FLT1 (ENSANAG00000027521)	ENSANAG00000028102	PAN3 (ENSANAG00000028419)	ENSANAG00000034890	FLT3 (ENSANAG00000025242)	URAD (ENSANAG00000029018) #21	CDX2 (ENSANAG00000030392) #22	PDX1 (ENSANAG00000033534)	GSX1 (ENSANAG00000020508)	POLR1D (ENSANAG00000024486)	LNX2 (ENSANAG00000028866) #24	ENSANAG00000024188	MTIF3 (ENSANAG00000031630)	GTF3A (ENSANAG00000019293)	RASL11A (ENSANAG00000027999)	ENSANAG00000023031	ENSANAG00000032118	NUP58 (ENSANAG00000023073)	MTMR6 (ENSANAG00000025737)	AMER2 (ENSANAG00000025607)
Catarrhini	ANCESTRAL SPECIES	21	ENSGT00910000148031	ENSGT00940000155349	ENSGT00910000147174	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000153889.e.b.a.d.a	ENSGT00910000147093	ENSGT00910000146937	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00440000038159.p.b	ENSGT00940000160575	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00390000003643 #23	ENSGT00550000075160.x	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000157443
Hominoidea	ANCESTRAL SPECIES	21	ENSGT00910000148031	ENSGT00940000155349	ENSGT00910000147174	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000153889.e.b.a.d.a	ENSGT00910000147093	ENSGT00910000146937	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00440000038159.p.b	ENSGT00940000160575	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160.x	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000157443	ENSGT00940000157332
Hominidae	ANCESTRAL SPECIES	23	ENSGT00390000004952.b	ENSGT00910000148031	ENSGT00940000155349	ENSGT00910000147174	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000153889.f	ENSGT00910000146937	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00440000038159.p.b	ENSGT00940000160575	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160.x	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000157443	ENSGT00940000157332
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	23	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00910000148031	ENSGT00940000155349	ENSGT00910000147174	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000153889.f	ENSGT00910000146937	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00940000160575	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160.x	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000157443	ENSGT00940000157332
Homo/Pan group	ANCESTRAL SPECIES	22	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00910000148031	ENSGT00940000155349	ENSGT00910000147174	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000153889.f	ENSGT00910000146937	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00940000160575	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160.x	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000157443	ENSGT00940000157332
Pan	ANCESTRAL SPECIES	22	ENSGT00390000004952.b	ENSGT00910000148031	ENSGT00940000155349	ENSGT00910000147174	ENSGT00950000183026.B	ENSGT00930000151026.f	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000153889.f	ENSGT00910000146937	ENSGT00940000158713	ENSGT00940000164144	ENSGT00390000001504	ENSGT00940000160575	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00390000015470.z.b	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160.x	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000157443
Chimpanzee	MODERN SPECIES	4	UBL3 (ENSPTRG00000005751)	ENSPTRG00000049804	SLC7A1 (ENSPTRG00000005750)	ENSPTRG00000046056	MTUS2 (ENSPTRG00000005747)	ENSPTRG00000045489	SLC46A3 (ENSPTRG00000005746)	POMP (ENSPTRG00000005745)	ENSPTRG00000046663	ENSPTRG00000045890	FLT1 (ENSPTRG00000005743)	PAN3 (ENSPTRG00000005742)	ENSPTRG00000046829	FLT3 (ENSPTRG00000005740)	URAD (ENSPTRG00000005739) #21	CDX2 (ENSPTRG00000043330) #22	ENSPTRG00000005737	PDX1 (ENSPTRG00000005736)	GSX1 (ENSPTRG00000005735)	POLR1D (ENSPTRG00000005734)	LNX2 (ENSPTRG00000005733) #24	MTIF3 (ENSPTRG00000005732)	GTF3A (ENSPTRG00000005730)	RASL11A (ENSPTRG00000005729)	RPL21 (ENSPTRG00000005728)	USP12 (ENSPTRG00000005727)	GPR12 (ENSPTRG00000046989)	WASF3 (ENSPTRG00000005725)	CDK8 (ENSPTRG00000005724)	RNF6 (ENSPTRG00000005723)	SHISA2 (ENSPTRG00000047295)
Bonobo	MODERN SPECIES	4	ENSPPAG00000037440	KATNAL1 (ENSPPAG00000033530)	UBL3 (ENSPPAG00000027496)	ENSPPAG00000015303	SLC7A1 (ENSPPAG00000037016)	ENSPPAG00000034238	MTUS2 (ENSPPAG00000032687)	ENSPPAG00000027903	SLC46A3 (ENSPPAG00000035795)	POMP (ENSPPAG00000036286)	ENSPPAG00000027416	ENSPPAG00000033250	ENSPPAG00000030264	PAN3 (ENSPPAG00000027826)	FLT3 (ENSPPAG00000015701)	CDX2 (ENSPPAG00000032963) #22	ENSPPAG00000032440	ENSPPAG00000032720	GSX1 (ENSPPAG00000032556)	ENSPPAG00000028138	LNX2 (ENSPPAG00000027444) #24	MTIF3 (ENSPPAG00000027304)	GTF3A (ENSPPAG00000034725)	RASL11A (ENSPPAG00000027996)	ENSPPAG00000042860	ENSPPAG00000007246	GPR12 (ENSPPAG00000007707)	WASF3 (ENSPPAG00000035699)	CDK8 (ENSPPAG00000035126)	RNF6 (ENSPPAG00000035870)	SHISA2 (ENSPPAG00000032206)
Human	MODERN SPECIES	4	MEDAG (ENSG00000102802)	ALOX5AP (ENSG00000132965)	USPL1 (ENSG00000132952)	HMGB1 (ENSG00000189403)	UBE2L5 (ENSG00000236444)	KATNAL1 (ENSG00000102781)	UBL3 (ENSG00000122042)	SLC7A1 (ENSG00000139514)	MTUS2 (ENSG00000132938)	SLC46A3 (ENSG00000139508)	POMP (ENSG00000132963)	FLT1 (ENSG00000102755)	PAN3 (ENSG00000152520)	FLT3 (ENSG00000122025)	URAD (ENSG00000183463) #21	CDX2 (ENSG00000165556) #22	PDX1 (ENSG00000139515)	GSX1 (ENSG00000169840)	POLR1D (ENSG00000186184)	LNX2 (ENSG00000139517) #24	MTIF3 (ENSG00000122033)	GTF3A (ENSG00000122034)	RASL11A (ENSG00000122035)	RPL21 (ENSG00000122026)	USP12 (ENSG00000152484)	GPR12 (ENSG00000132975)	WASF3 (ENSG00000132970)	CDK8 (ENSG00000132964)	RNF6 (ENSG00000127870)	SHISA2 (ENSG00000180730)	ATP8A2 (ENSG00000132932)
Gorilla	MODERN SPECIES	4	USPL1 (ENSGGOG00000004673)	HMGB1 (ENSGGOG00000026764)	UBE2L5 (ENSGGOG00000006857)	ENSGGOG00000024714	KATNAL1 (ENSGGOG00000026875)	UBL3 (ENSGGOG00000023146)	ENSGGOG00000042729	SLC46A3 (ENSGGOG00000014254)	POMP (ENSGGOG00000015316)	ENSGGOG00000036780	ENSGGOG00000036812	FLT1 (ENSGGOG00000008750)	PAN3 (ENSGGOG00000016079)	FLT3 (ENSGGOG00000000882)	URAD (ENSGGOG00000005489) #21	CDX2 (ENSGGOG00000005487) #22	PDX1 (ENSGGOG00000002569)	GSX1 (ENSGGOG00000005011)	POLR1D (ENSGGOG00000004235)	LNX2 (ENSGGOG00000016167) #24	MTIF3 (ENSGGOG00000041079)	GTF3A (ENSGGOG00000008407)	RASL11A (ENSGGOG00000008785)	ENSGGOG00000003002	ENSGGOG00000011358	GPR12 (ENSGGOG00000000849)	WASF3 (ENSGGOG00000012518)	CDK8 (ENSGGOG00000006569)	RNF6 (ENSGGOG00000006568)	ENSGGOG00000025679	ATP8A2 (ENSGGOG00000003045)
Orangutan	MODERN SPECIES	4	ENSPPYG00000031030	KATNAL1 (ENSPPYG00000005253)	UBL3 (ENSPPYG00000037129)	ENSPPYG00000034870	SLC7A1 (ENSPPYG00000005250)	MTUS2 (ENSPPYG00000005249)	SLC46A3 (ENSPPYG00000005248)	POMP (ENSPPYG00000005247)	ENSPPYG00000038952	ENSPPYG00000034417	FLT1 (ENSPPYG00000005246)	PAN3 (ENSPPYG00000005245)	ENSPPYG00000040072	FLT3 (ENSPPYG00000005244)	URAD (ENSPPYG00000005243) #21	CDX2 (ENSPPYG00000005242) #22	ENSPPYG00000005241	PDX1 (ENSPPYG00000005240)	GSX1 (ENSPPYG00000005239)	ENSPPYG00000005238 #23	LNX2 (ENSPPYG00000005237) #24	MTIF3 (ENSPPYG00000005236)	GTF3A (ENSPPYG00000005235)	RASL11A (ENSPPYG00000005234)	RPL21 (ENSPPYG00000005233)	USP12 (ENSPPYG00000005232)	GPR12 (ENSPPYG00000005231)	WASF3 (ENSPPYG00000005230)	CDK8 (ENSPPYG00000005229)	RNF6 (ENSPPYG00000005228)	SHISA2 (ENSPPYG00000030544)
Gibbon	MODERN SPECIES	24	SLC7A1 (ENSNLEG00000000622)	ENSNLEG00000035615	ENSNLEG00000033304	ENSNLEG00000000618	SLC46A3 (ENSNLEG00000000599)	POMP (ENSNLEG00000000572)	ENSNLEG00000000571	ENSNLEG00000033802	ENSNLEG00000030098	FLT1 (ENSNLEG00000000456)	PAN3 (ENSNLEG00000000388)	ENSNLEG00000029210	ENSNLEG00000035718	FLT3 (ENSNLEG00000000372)	URAD (ENSNLEG00000000369) #21	CDX2 (ENSNLEG00000000365) #22	PDX1 (ENSNLEG00000000362)	GSX1 (ENSNLEG00000000360)	ENSNLEG00000000358	LNX2 (ENSNLEG00000000345) #24	MTIF3 (ENSNLEG00000000343)	GTF3A (ENSNLEG00000000331)	RASL11A (ENSNLEG00000000329)	ENSNLEG00000000327	ENSNLEG00000000323	ATP2B4 (ENSNLEG00000018117)	ENSNLEG00000033057	OPTC (ENSNLEG00000018116)	PRELP (ENSNLEG00000018115)	FMOD (ENSNLEG00000018114)	BTG2 (ENSNLEG00000034785)
Cercopithecidae	ANCESTRAL SPECIES	23	ENSGT00910000148031	ENSGT00940000155349	ENSGT00910000147174	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000153889.e.b.a.d.a	ENSGT00910000147093	ENSGT00910000146937	ENSGT00940000158713	ENSGT00910000147887	ENSGT00390000001504	ENSGT00440000038159.p.b	ENSGT00940000160575	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00390000003643 #23	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000165378.d	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000157443
Cercopithecinae	ANCESTRAL SPECIES	20	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00940000155828.o.a	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00910000147174	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000158713	ENSGT00910000147887	ENSGT00390000001504	ENSGT00440000038159.p.b	ENSGT00940000160575	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00390000003643 #23	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000165378.d	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000157443
Vervet Monkey	MODERN SPECIES	22	HSPH1 (ENSCSAG00000017943)	TEX26 (ENSCSAG00000017946)	MEDAG (ENSCSAG00000017948)	ALOX5AP (ENSCSAG00000017950)	USPL1 (ENSCSAG00000017953)	KATNAL1 (ENSCSAG00000017958)	UBL3 (ENSCSAG00000017959)	SLC7A1 (ENSCSAG00000017961)	MTUS2 (ENSCSAG00000017964)	SLC46A3 (ENSCSAG00000017966)	POMP (ENSCSAG00000017967)	FLT1 (ENSCSAG00000017969)	PAN3 (ENSCSAG00000017971)	FLT3 (ENSCSAG00000017973)	URAD (ENSCSAG00000017975) #21	CDX2 (ENSCSAG00000017976) #22	PDX1 (ENSCSAG00000017977)	GSX1 (ENSCSAG00000017979)	ENSCSAG00000017980 #23	LNX2 (ENSCSAG00000017981) #24	MTIF3 (ENSCSAG00000017982)	GTF3A (ENSCSAG00000017983)	RASL11A (ENSCSAG00000017985)	ENSCSAG00000017986	GPR12 (ENSCSAG00000018592)	WASF3 (ENSCSAG00000017987)	CDK8 (ENSCSAG00000017989)	RNF6 (ENSCSAG00000017991)	SHISA2 (ENSCSAG00000017992)	ATP8A2 (ENSCSAG00000017997)	NUP58 (ENSCSAG00000018000)
Cercopithecinae_a	ANCESTRAL SPECIES	19	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00910000147174	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000153783.a	ENSGT00910000147093	ENSGT00910000146937	ENSGT00940000158713	ENSGT00910000147887	ENSGT00390000001504	ENSGT00440000038159.p.b	ENSGT00940000160575	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00390000003643 #23	ENSGT00910000147903	ENSGT00550000075160.x	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.b.a.a.a.m	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000165378.d	ENSGT00940000157104
Cercopithecinae_b	ANCESTRAL SPECIES	28	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00910000147174	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000153783.a	ENSGT00910000147093	ENSGT00910000146937	ENSGT00940000158713	ENSGT00910000147887	ENSGT00390000001504	ENSGT00440000038159.p.b	ENSGT00940000160575	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00910000147903	ENSGT00550000075160.x	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.b.a.a.a.m	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000165378.d	ENSGT00940000157104	ENSGT00940000158530
Olive baboon	MODERN SPECIES	6	ALOX5AP (ENSPANG00000020217)	USPL1 (ENSPANG00000005488)	HMGB1 (ENSPANG00000007200)	UBE2L5 (ENSPANG00000043221)	KATNAL1 (ENSPANG00000023364)	UBL3 (ENSPANG00000008471)	SLC7A1 (ENSPANG00000012138)	MTUS2 (ENSPANG00000013682)	SLC46A3 (ENSPANG00000020218)	POMP (ENSPANG00000046275)	ENSPANG00000044787	FLT1 (ENSPANG00000009892)	PAN3 (ENSPANG00000001988)	FLT3 (ENSPANG00000009315)	URAD (ENSPANG00000014018) #21	CDX2 (ENSPANG00000050183) #22	PDX1 (ENSPANG00000012683)	ENSPANG00000047094	GSX1 (ENSPANG00000017129)	ENSPANG00000038544	ENSPANG00000020259	LNX2 (ENSPANG00000012983) #24	MTIF3 (ENSPANG00000005047)	GTF3A (ENSPANG00000012593)	RASL11A (ENSPANG00000044196)	ENSPANG00000011984	USP12 (ENSPANG00000011533)	GPR12 (ENSPANG00000003061)	WASF3 (ENSPANG00000009058)	CDK8 (ENSPANG00000001990)	RNF6 (ENSPANG00000005719)
Cercopithecinae_d	ANCESTRAL SPECIES	93	ENSGT00910000148031	ENSGT00940000155349	ENSGT00910000147174	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000153783.a	ENSGT00910000147093	ENSGT00910000146937	ENSGT00940000158713	ENSGT00910000147887	ENSGT00390000001504	ENSGT00440000038159.p.b	ENSGT00940000160575	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00910000147903	ENSGT00550000075160.x	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.b.a.a.a.m	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000165378.d	ENSGT00940000157104	ENSGT00940000158530
Drill	MODERN SPECIES	1324						ENSMLEG00000006158	SLC46A3 (ENSMLEG00000044293)	POMP (ENSMLEG00000039576)	ENSMLEG00000042438	ENSMLEG00000036390	ENSMLEG00000038076	FLT1 (ENSMLEG00000034284)	ENSMLEG00000003098	PAN3 (ENSMLEG00000008619)	FLT3 (ENSMLEG00000037398)	CDX2 (ENSMLEG00000037430) #22	PDX1 (ENSMLEG00000032316)	ENSMLEG00000041805	ENSMLEG00000041048	LNX2 (ENSMLEG00000039062) #24	MTIF3 (ENSMLEG00000039110)	GTF3A (ENSMLEG00000039703)	RASL11A (ENSMLEG00000036089)	ENSMLEG00000024280	ENSMLEG00000033598	GPR12 (ENSMLEG00000002545)	WASF3 (ENSMLEG00000040168)	CDK8 (ENSMLEG00000040071)	RNF6 (ENSMLEG00000038569)	SHISA2 (ENSMLEG00000034103)	ENSMLEG00000036990
Sooty mangabey	MODERN SPECIES	255		ENSCATG00000034802	SLC7A1 (ENSCATG00000025899)	ENSCATG00000037549	MTUS2 (ENSCATG00000041831)	SLC46A3 (ENSCATG00000021488)	POMP (ENSCATG00000037462)	ENSCATG00000033485	ENSCATG00000028829	ENSCATG00000024438	FLT1 (ENSCATG00000034541)	PAN3 (ENSCATG00000030893)	ENSCATG00000032726	FLT3 (ENSCATG00000014529)	URAD (ENSCATG00000007826) #21	CDX2 (ENSCATG00000007363) #22	PDX1 (ENSCATG00000035793)	GSX1 (ENSCATG00000028004)	ENSCATG00000002488	ENSCATG00000030710	LNX2 (ENSCATG00000035354) #24	MTIF3 (ENSCATG00000007775)	GTF3A (ENSCATG00000032361)	RASL11A (ENSCATG00000033838)	ENSCATG00000032591	ENSCATG00000038452	ENSCATG00000018180	GPR12 (ENSCATG00000018217)	WASF3 (ENSCATG00000037570)	ENSCATG00000032759	CDK8 (ENSCATG00000021984)
Macaca	ANCESTRAL SPECIES	19	ENSGT00950000183120.e.b.a.b	ENSGT00940000155828.o.a	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00940000153783.a	ENSGT00910000147093	ENSGT00940000158713	ENSGT00390000001504	ENSGT00440000038159.p.b	ENSGT00940000160575	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00390000003643 #23	ENSGT00910000147903	ENSGT00550000075160.x	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000157104	ENSGT00940000158530
Pig-tailed macaque	MODERN SPECIES	165	ENSMNEG00000019179	ST6GAL2 (ENSMNEG00000036708)	ENSMNEG00000022050	SLC5A7 (ENSMNEG00000039266)	SLC7A1 (ENSMNEG00000044453)	MTUS2 (ENSMNEG00000039238)	SLC46A3 (ENSMNEG00000038996)	POMP (ENSMNEG00000031404)	ENSMNEG00000043904	ENSMNEG00000028177	FLT1 (ENSMNEG00000032149)	PAN3 (ENSMNEG00000032817)	ENSMNEG00000043801	FLT3 (ENSMNEG00000032442)	URAD (ENSMNEG00000045421) #21	CDX2 (ENSMNEG00000043440) #22	PDX1 (ENSMNEG00000032095)	GSX1 (ENSMNEG00000032682)	ENSMNEG00000008630	ENSMNEG00000034652	LNX2 (ENSMNEG00000040860) #24	MTIF3 (ENSMNEG00000032443)	GTF3A (ENSMNEG00000043473)	RASL11A (ENSMNEG00000033345)	ENSMNEG00000034115	ENSMNEG00000039505	GPR12 (ENSMNEG00000010974)	WASF3 (ENSMNEG00000028711)	CDK8 (ENSMNEG00000031167)	RNF6 (ENSMNEG00000000673)	ATP8A2 (ENSMNEG00000037319)
Macaca_a	ANCESTRAL SPECIES	19	ENSGT00390000002316	ENSGT00950000183120.e.b.a.b	ENSGT00940000155828.o.a	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j	ENSGT00910000147093	ENSGT00940000158713	ENSGT00390000001504	ENSGT00440000038159.p.b	ENSGT00940000160575	ENSGT00940000153229.A.b #21	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00390000003643 #23	ENSGT00940000158381 #24	ENSGT01100000263493.a.b.a.a.b.a.b.b	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.b.a.a.a.m	ENSGT01100000263493.a.b.a.a.b.b.a.b.a.a.a.a.a.b.a	ENSGT00940000153284.a.h.i.a	ENSGT00940000164709.a.b.b.b.b.a	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT01100000263539.b.a.a.a.b.b.a.a.a.a.b.a.a.b
Crab-eating macaque	MODERN SPECIES	8	UBE2L5 (ENSMFAG00000045697)	ENSMFAG00000053527	KATNAL1 (ENSMFAG00000053013)	UBL3 (ENSMFAG00000044955)	SLC7A1 (ENSMFAG00000043457)	MTUS2 (ENSMFAG00000032200)	SLC46A3 (ENSMFAG00000030072)	POMP (ENSMFAG00000025369)	ENSMFAG00000039222	FLT1 (ENSMFAG00000035718)	PAN3 (ENSMFAG00000025538)	ENSMFAG00000063510	ENSMFAG00000052223	FLT3 (ENSMFAG00000044854)	URAD (ENSMFAG00000043442) #21	CDX2 (ENSMFAG00000051158) #22	PDX1 (ENSMFAG00000063371)	GSX1 (ENSMFAG00000037158)	ENSMFAG00000045264 #23	LNX2 (ENSMFAG00000045245) #24	ENSMFAG00000050995	MTIF3 (ENSMFAG00000045045)	GTF3A (ENSMFAG00000044837)	RASL11A (ENSMFAG00000044628)	ENSMFAG00000053340	ENSMFAG00000062305	USP12 (ENSMFAG00000031734)	ENSMFAG00000050832	ENSMFAG00000058696	GPR12 (ENSMFAG00000033581)	WASF3 (ENSMFAG00000006706)
Rhesus	MODERN SPECIES	8	ENSMMUG00000052770	HMGB1 (ENSMMUG00000046615)	ENSMMUG00000058466	UBE2L5 (ENSMMUG00000008940)	KATNAL1 (ENSMMUG00000004922)	UBL3 (ENSMMUG00000003771)	SLC7A1 (ENSMMUG00000008661)	MTUS2 (ENSMMUG00000008658)	SLC46A3 (ENSMMUG00000013721)	POMP (ENSMMUG00000058998)	ENSMMUG00000063649	FLT1 (ENSMMUG00000021538)	PAN3 (ENSMMUG00000022522)	FLT3 (ENSMMUG00000016139)	URAD (ENSMMUG00000016138) #21	CDX2 (ENSMMUG00000052070) #22	PDX1 (ENSMMUG00000064615)	GSX1 (ENSMMUG00000004507)	POLR1D (ENSMMUG00000020386) #23	LNX2 (ENSMMUG00000058786) #24	ENSMMUG00000059867	MTIF3 (ENSMMUG00000009030)	GTF3A (ENSMMUG00000009029)	RASL11A (ENSMMUG00000049650)	ENSMMUG00000058755	ENSMMUG00000054994	USP12 (ENSMMUG00000021425)	ENSMMUG00000050226	ENSMMUG00000057481	GPR12 (ENSMMUG00000060819)	WASF3 (ENSMMUG00000005055)
Rhinopithecus	ANCESTRAL SPECIES	56	ENSGT00390000004952.b	ENSGT00910000148031	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00910000147174	ENSGT00950000183026.A.b	ENSGT00950000183096.a.a.c.b	ENSGT00390000010734.j.i	ENSGT00940000153889.e.b.a.d.a	ENSGT00910000147093	ENSGT00910000146937	ENSGT00940000158713	ENSGT00390000001504	ENSGT00940000160575	ENSGT00390000002395	ENSGT00940000161261 #22	ENSGT00940000162542	ENSGT00940000154361.A	ENSGT00550000075160.x	ENSGT00940000158381 #24	ENSGT00390000014424	ENSGT00940000155647	ENSGT00940000161208	ENSGT00950000182922.a.a.a.b.b.a.a.a.m	ENSGT00940000153284.a.h.j	ENSGT01060000248564.b.a.b.a	ENSGT00950000182962.a.a	ENSGT00940000165378.d	ENSGT00940000157104	ENSGT00940000158530	ENSGT00940000157443
Black snub-nosed monkey	MODERN SPECIES	1391		UBL3 (ENSRBIG00000032584)	ENSRBIG00000024318	SLC7A1 (ENSRBIG00000030519)	MTUS2 (ENSRBIG00000042717)	ENSRBIG00000043698	SLC46A3 (ENSRBIG00000039296)	ENSRBIG00000028141	ENSRBIG00000040184	ENSRBIG00000017410	ENSRBIG00000034378	FLT1 (ENSRBIG00000036952)	PAN3 (ENSRBIG00000036981)	FLT3 (ENSRBIG00000042399)	ENSRBIG00000030643	CDX2 (ENSRBIG00000038667) #22	PDX1 (ENSRBIG00000039353)	GSX1 (ENSRBIG00000032182)	ENSRBIG00000036378	LNX2 (ENSRBIG00000028850) #24	MTIF3 (ENSRBIG00000027271)	GTF3A (ENSRBIG00000044964)	RASL11A (ENSRBIG00000043749)	ENSRBIG00000036802	ENSRBIG00000041212	GPR12 (ENSRBIG00000001744)	WASF3 (ENSRBIG00000033396)	CDK8 (ENSRBIG00000040781)	ENSRBIG00000044340	RNF6 (ENSRBIG00000035200)	SHISA2 (ENSRBIG00000029204)
Golden snub-nosed monkey	MODERN SPECIES	603					ENSRROG00000029261	SLC46A3 (ENSRROG00000013197)	ENSRROG00000035051	ENSRROG00000028953	ENSRROG00000036924	ENSRROG00000044673	FLT1 (ENSRROG00000044082)	PAN3 (ENSRROG00000044835)	ENSRROG00000038089	FLT3 (ENSRROG00000032511)	URAD (ENSRROG00000032393) #21	CDX2 (ENSRROG00000036416) #22	PDX1 (ENSRROG00000038796)	GSX1 (ENSRROG00000032356)
Tarsier	MODERN SPECIES	5212									OPN5 (ENSTSYG00000005962)	ADGRF4 (ENSTSYG00000002483)	ENSTSYG00000002476	CD2AP (ENSTSYG00000002464)	ENSTSYG00000034627	PAN3 (ENSTSYG00000011845)	FLT3 (ENSTSYG00000011237)	ENSTSYG00000029265 #22