Boreoeutheria ANCESTRAL SPECIES 2 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00650000094763 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000165570 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 Euarchontoglires ANCESTRAL SPECIES 2 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00650000094763 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Primates ANCESTRAL SPECIES 1 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00650000094763 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Haplorrhini ANCESTRAL SPECIES 5 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 ENSGT01030000234648.a.a.d Simiiformes ANCESTRAL SPECIES 1 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000153510.a.f #19 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000169558 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00440000033232.c ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 Catarrhini ANCESTRAL SPECIES 2 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00530000063786.a.m ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000153510.a.f #19 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000169558 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00390000014001.b ENSGT00440000033232.c ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 Cercopithecidae ANCESTRAL SPECIES 1 ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00530000063786.a.m ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865.a.a #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000004169.b #16 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000153510.a.f #19 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000169558 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00390000014001.b ENSGT00440000033232.c ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 Rhinopithecus ANCESTRAL SPECIES 376 ENSGT00940000159892 #13 ENSGT00940000155865.a.a #14 ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000004169.b #16 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000153510.a.f.a #19 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00490000044176.a #21 ENSGT00950000183062.a.a.a ENSGT00940000169558 ENSGT00940000160282 Black snub-nosed monkey MODERN SPECIES 1077 FOXP1 (ENSRBIG00000012977) #13 EIF4E3 (ENSRBIG00000028060) #14 PROK2 (ENSRBIG00000040938) #15 ENSRBIG00000031010 #16 RYBP (ENSRBIG00000037631) #17 SHQ1 (ENSRBIG00000026280) #18 ENSRBIG00000036548 #19 GXYLT2 (ENSRBIG00000032701) #20 EBLN2 (ENSRBIG00000000043) #21 PPP4R2 (ENSRBIG00000040717) #22 Golden snub-nosed monkey DUPLICATION Golden snub-nosed monkey MODERN SPECIES 2551 FOXP1 (ENSRROG00000044844) #13 ENSRROG00000014883 #14 ENSRROG00000028681 PROK2 (ENSRROG00000038544) #15 ENSRROG00000031494 #16 RYBP (ENSRROG00000043276) #17 SHQ1 (ENSRROG00000034126) #18 ENSRROG00000014028 #19 GXYLT2 (ENSRROG00000032249) #20 EBLN2 (ENSRROG00000045407) #21 ENSRROG00000013459 #22 ENSRROG00000014332 PDZRN3 (ENSRROG00000000088) ENSRROG00000043474 CNTN3 (ENSRROG00000015240) Golden snub-nosed monkey MODERN SPECIES 2519 ENSRROG00000020738 SLFN12 (ENSRROG00000018265) SLFN13 (ENSRROG00000018236) ENSRROG00000043072 ENSRROG00000001089 SLFN12L (ENSRROG00000039374) ENSRROG00000045772 #22 SLFN14 (ENSRROG00000042714) PEX12 (ENSRROG00000040662) AP2B1 (ENSRROG00000030200) RASL10B (ENSRROG00000030917) GAS2L2 (ENSRROG00000031550) C17orf50 (ENSRROG00000027811) MMP28 (ENSRROG00000029324) TAF15 (ENSRROG00000029426) HEATR9 (ENSRROG00000010829) ENSRROG00000029256 RDM1 (ENSRROG00000035242) LYZL6 (ENSRROG00000037519) Cercopithecinae ANCESTRAL SPECIES 5 ENSGT00390000008631.a.d.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00530000063786.a.m ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865.a.a #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000004169.b #16 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00390000014001.b ENSGT00440000033232.c ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861.c Vervet Monkey MODERN SPECIES 14 TMF1 (ENSCSAG00000011667) UBA3 (ENSCSAG00000011650) ARL6IP5 (ENSCSAG00000011634) LMOD3 (ENSCSAG00000011626) FRMD4B (ENSCSAG00000011618) ENSCSAG00000018800 ENSCSAG00000011601 MITF (ENSCSAG00000011595) ENSCSAG00000018802 FOXP1 (ENSCSAG00000011581) #13 ENSCSAG00000011556 #14 GPR27 (ENSCSAG00000018804) RYBP (ENSCSAG00000011518) #17 SHQ1 (ENSCSAG00000011514) #18 GXYLT2 (ENSCSAG00000011498) #20 PPP4R2 (ENSCSAG00000011489) #22 PDZRN3 (ENSCSAG00000011455) CNTN3 (ENSCSAG00000011366) CHL1 (ENSCSAG00000011267) CNTN6 (ENSCSAG00000011221) CNTN4 (ENSCSAG00000011111) IL5RA (ENSCSAG00000011082) TRNT1 (ENSCSAG00000011052) CRBN (ENSCSAG00000011049) LRRN1 (ENSCSAG00000018805) SETMAR (ENSCSAG00000011036) SUMF1 (ENSCSAG00000011018) ITPR1 (ENSCSAG00000010951) BHLHE40 (ENSCSAG00000010905) ARL8B (ENSCSAG00000010899) EDEM1 (ENSCSAG00000010870) Cercopithecinae_a ANCESTRAL SPECIES 5 ENSGT00390000008631.a.d.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00530000063786.a.m ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865.a.a #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000004169.b #16 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00390000014001.b ENSGT00440000033232.c ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861.c Macaca ANCESTRAL SPECIES 5 ENSGT00550000074831 ENSGT01040000240967 ENSGT00390000008631.a.d.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865.a.a #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00390000014001.b ENSGT00440000033232.c.f ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861.c Pig-tailed macaque DUPLICATION Pig-tailed macaque MODERN SPECIES 560 MITF (ENSMNEG00000036173) ENSMNEG00000013127 ENSMNEG00000029209 MDFIC2 (ENSMNEG00000043959) FOXP1 (ENSMNEG00000028530) #13 ENSMNEG00000035212 #14 GPR27 (ENSMNEG00000017685) ENSMNEG00000006444 PROK2 (ENSMNEG00000035459) #15 RYBP (ENSMNEG00000010262) #17 SHQ1 (ENSMNEG00000032667) #18 GXYLT2 (ENSMNEG00000031743) #20 ENSMNEG00000014462 #22 PDZRN3 (ENSMNEG00000034940) ENSMNEG00000038271 CNTN3 (ENSMNEG00000035492) CHL1 (ENSMNEG00000028818) CNTN6 (ENSMNEG00000018635) PDLIM5 (ENSMNEG00000031120) HPGDS (ENSMNEG00000033422) SMARCAD1 (ENSMNEG00000038117) ATOH1 (ENSMNEG00000006193) GRID2 (ENSMNEG00000015816) ENSMNEG00000032609 CCSER1 (ENSMNEG00000030774) MMRN1 (ENSMNEG00000029143) SNCA (ENSMNEG00000004974) TIGD2 (ENSMNEG00000001240) Pig-tailed macaque MODERN SPECIES 116 CCL13 (ENSMNEG00000041760) CCL1 (ENSMNEG00000043966) TMEM132E (ENSMNEG00000029646) ZNF830 (ENSMNEG00000005226) CCT6B (ENSMNEG00000041565) LIG3 (ENSMNEG00000039607) RFFL (ENSMNEG00000031746) RAD51D (ENSMNEG00000028511) FNDC8 (ENSMNEG00000041134) NLE1 (ENSMNEG00000032551) UNC45B (ENSMNEG00000036484) SLFN5 (ENSMNEG00000032653) SLFN12 (ENSMNEG00000044024) SLFN13 (ENSMNEG00000033683) ENSMNEG00000029409 ENSMNEG00000045423 #22 SLFN12L (ENSMNEG00000040209) SLFN14 (ENSMNEG00000007518) PEX12 (ENSMNEG00000034562) ENSMNEG00000029590 AP2B1 (ENSMNEG00000042752) RASL10B (ENSMNEG00000039335) GAS2L2 (ENSMNEG00000039828) C17orf50 (ENSMNEG00000036265) MMP28 (ENSMNEG00000035643) TAF15 (ENSMNEG00000044227) HEATR9 (ENSMNEG00000029332) ENSMNEG00000034547 RDM1 (ENSMNEG00000039977) LYZL6 (ENSMNEG00000036987) CCL16 (ENSMNEG00000033984) Macaca_a ANCESTRAL SPECIES 5 ENSGT00550000074831 ENSGT01040000240967 ENSGT00390000008631.a.d.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865.a.a #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00440000033232.c.f ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861.c ENSGT00940000157717 Crab-eating macaque MODERN SPECIES 11 ENSMFAG00000051018 ARL6IP5 (ENSMFAG00000001584) LMOD3 (ENSMFAG00000044328) FRMD4B (ENSMFAG00000040109) MITF (ENSMFAG00000038478) MDFIC2 (ENSMFAG00000042217) FOXP1 (ENSMFAG00000033964) #13 EIF4E3 (ENSMFAG00000039909) ##14 GPR27 (ENSMFAG00000053255) ENSMFAG00000024958 PROK2 (ENSMFAG00000003820) #15 RYBP (ENSMFAG00000049247) #17 ENSMFAG00000048279 SHQ1 (ENSMFAG00000039148) #18 GXYLT2 (ENSMFAG00000044294) #20 PPP4R2 (ENSMFAG00000042258) #22 PDZRN3 (ENSMFAG00000000986) CNTN3 (ENSMFAG00000045446) CHL1 (ENSMFAG00000040804) CNTN6 (ENSMFAG00000001088) CNTN4 (ENSMFAG00000031919) IL5RA (ENSMFAG00000006030) TRNT1 (ENSMFAG00000045113) CRBN (ENSMFAG00000031028) LRRN1 (ENSMFAG00000020302) ENSMFAG00000029288 SUMF1 (ENSMFAG00000040853) ITPR1 (ENSMFAG00000044748) BHLHE40 (ENSMFAG00000040134) ARL8B (ENSMFAG00000035233) EDEM1 (ENSMFAG00000038359) Rhesus MODERN SPECIES 11 EOGT (ENSMMUG00000011090) TMF1 (ENSMMUG00000008616) UBA3 (ENSMMUG00000008620) ARL6IP5 (ENSMMUG00000058373) LMOD3 (ENSMMUG00000008628) FRMD4B (ENSMMUG00000000387) MITF (ENSMMUG00000002100) MDFIC2 (ENSMMUG00000057543) FOXP1 (ENSMMUG00000002889) #13 EIF4E3 (ENSMMUG00000007780) #14 GPR27 (ENSMMUG00000040565) PROK2 (ENSMMUG00000018494) #15 RYBP (ENSMMUG00000042444) #17 SHQ1 (ENSMMUG00000009571) #18 GXYLT2 (ENSMMUG00000022507) #20 PPP4R2 (ENSMMUG00000016959) #22 ENSMMUG00000064384 PDZRN3 (ENSMMUG00000012661) ENSMMUG00000051810 CNTN3 (ENSMMUG00000021241) CHL1 (ENSMMUG00000001349) CNTN6 (ENSMMUG00000008549) ENSMMUG00000051943 ENSMMUG00000009425 ENSMMUG00000056158 CNTN4 (ENSMMUG00000001847) IL5RA (ENSMMUG00000001849) TRNT1 (ENSMMUG00000017983) CRBN (ENSMMUG00000017986) LRRN1 (ENSMMUG00000049373) SETMAR (ENSMMUG00000017828) Cercopithecinae_b ANCESTRAL SPECIES ENSGT00390000008631.a.d.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00530000063786.a.m ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865.a.a #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000004169.b #16 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00390000014001.b ENSGT00440000033232.c ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861.c Olive baboon MODERN SPECIES 11 ARL6IP5 (ENSPANG00000006554) LMOD3 (ENSPANG00000011422) FRMD4B (ENSPANG00000022151) ENSPANG00000030680 MITF (ENSPANG00000011565) MDFIC2 (ENSPANG00000040564) FOXP1 (ENSPANG00000009084) #13 ENSPANG00000024441 ##14 GPR27 (ENSPANG00000037165) PROK2 (ENSPANG00000031802) #15 RYBP (ENSPANG00000046879) #17 ENSPANG00000043336 SHQ1 (ENSPANG00000002881) #18 ENSPANG00000041507 GXYLT2 (ENSPANG00000023883) #20 PPP4R2 (ENSPANG00000004247) #22 PDZRN3 (ENSPANG00000011423) CNTN3 (ENSPANG00000011424) ENSPANG00000049590 CHL1 (ENSPANG00000007743) ENSPANG00000050596 CNTN6 (ENSPANG00000010252) ENSPANG00000041415 ENSPANG00000011250 IL5RA (ENSPANG00000011489) TRNT1 (ENSPANG00000025944) CRBN (ENSPANG00000007745) LRRN1 (ENSPANG00000007804) ENSPANG00000043434 SETMAR (ENSPANG00000005127) SUMF1 (ENSPANG00000023714) Cercopithecinae_d ANCESTRAL SPECIES 12 ENSGT00390000008631.a.d.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00530000063786.a.m ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865.a.a #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000004169.b #16 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00390000014001.b ENSGT00440000033232.c ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861.c Sooty mangabey MODERN SPECIES 650 ARL6IP5 (ENSCATG00000029543) LMOD3 (ENSCATG00000014427) FRMD4B (ENSCATG00000041747) MITF (ENSCATG00000036190) ENSCATG00000035930 MDFIC2 (ENSCATG00000030313) FOXP1 (ENSCATG00000044155) #13 ENSCATG00000042150 #14 GPR27 (ENSCATG00000022613) ENSCATG00000004327 PROK2 (ENSCATG00000034783) #15 ENSCATG00000036252 #16 RYBP (ENSCATG00000034872) #17 SHQ1 (ENSCATG00000041238) #18 GXYLT2 (ENSCATG00000041906) #20 PPP4R2 (ENSCATG00000043982) #22 PDZRN3 (ENSCATG00000011356) CNTN3 (ENSCATG00000034171) CHL1 (ENSCATG00000029263) CNTN6 (ENSCATG00000010690) CNTN4 (ENSCATG00000013943) IL5RA (ENSCATG00000034457) TRNT1 (ENSCATG00000031985) CRBN (ENSCATG00000031208) LRRN1 (ENSCATG00000022421) ENSCATG00000036442 SETMAR (ENSCATG00000030348) SUMF1 (ENSCATG00000041356) ITPR1 (ENSCATG00000041137) BHLHE40 (ENSCATG00000041297) ARL8B (ENSCATG00000039869) Drill MODERN SPECIES 264 ENSMLEG00000035493 ARL6IP5 (ENSMLEG00000032302) LMOD3 (ENSMLEG00000008625) FRMD4B (ENSMLEG00000034545) MITF (ENSMLEG00000039415) ENSMLEG00000034644 MDFIC2 (ENSMLEG00000007420) FOXP1 (ENSMLEG00000037250) #13 ENSMLEG00000038551 #14 ENSMLEG00000010756 PROK2 (ENSMLEG00000030120) #15 ENSMLEG00000037986 #16 RYBP (ENSMLEG00000038150) #17 SHQ1 (ENSMLEG00000038493) #18 GXYLT2 (ENSMLEG00000000099) #20 PPP4R2 (ENSMLEG00000040160) #22 PRR23E (ENSMLEG00000030492) ENSMLEG00000026183 TPRA1 (ENSMLEG00000034167) MCM2 (ENSMLEG00000038079) PODXL2 (ENSMLEG00000021945) ABTB1 (ENSMLEG00000043506) MGLL (ENSMLEG00000038697) KBTBD12 (ENSMLEG00000032213) SEC61A1 (ENSMLEG00000032430) RUVBL1 (ENSMLEG00000038540) ENSMLEG00000044016 EEFSEC (ENSMLEG00000041771) DNAJB8 (ENSMLEG00000014589) GATA2 (ENSMLEG00000041394) ENSMLEG00000027936 Hominoidea DUPLICATION Hominoidea ANCESTRAL SPECIES 2 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00530000063786.a.m ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00490000044176.b.b ##21 ENSGT00940000160975.g #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00390000014001.b ENSGT00440000033232.c ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861.c Hominidae ANCESTRAL SPECIES 2 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00530000063786.a.m ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00490000044176.b.b ##21 ENSGT00940000160975.g #22 ENSGT00950000183062.a.a.a ENSGT00940000153272.a.b.o.b.b ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00390000014001.b ENSGT00440000033232.c ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 Homo/Pan/Gorilla group ANCESTRAL SPECIES 2 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00530000063786.a.m ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00490000044176.b.b ##21 ENSGT00940000160975.g #22 ENSGT00950000183062.a.a.a ENSGT00940000153272.a.b.o.b.b ENSGT00940000160282 ENSGT00940000164367 ENSGT00390000017955.c.s.b ENSGT00940000156324 ENSGT00940000154477.i ENSGT00390000017040 ENSGT00930000151026.e.b ENSGT00940000155947 ENSGT00530000063353.a.b.b ENSGT00390000003428.x ENSGT00950000182832.B ENSGT00940000158913 ENSGT01010000222287.B.b.a.a.a Gorilla MODERN SPECIES 16 LMOD3 (ENSGGOG00000015200) FRMD4B (ENSGGOG00000002181) MITF (ENSGGOG00000024338) ENSGGOG00000026201 MDFIC2 (ENSGGOG00000043971) RNF151 (ENSGGOG00000009376) FOXP1 (ENSGGOG00000010391) #13 ENSGGOG00000042096 #14 GPR27 (ENSGGOG00000010203) ENSGGOG00000039593 PROK2 (ENSGGOG00000024537) #15 RYBP (ENSGGOG00000040802) #17 SHQ1 (ENSGGOG00000034818) #18 GXYLT2 (ENSGGOG00000005057) #20 ENSGGOG00000043304 PPP4R2 (ENSGGOG00000008408) #22 ENSGGOG00000005021 PDZRN3 (ENSGGOG00000008313) ENSGGOG00000024839 CNTN3 (ENSGGOG00000002395) ENSGGOG00000025270 ENSGGOG00000040706 ENSGGOG00000041697 ROBO2 (ENSGGOG00000011779) ENSGGOG00000040855 ENSGGOG00000027306 ROBO1 (ENSGGOG00000001449) GBE1 (ENSGGOG00000026805) ENSGGOG00000042856 CADM2 (ENSGGOG00000026417) VGLL3 (ENSGGOG00000009492) Homo/Pan group ANCESTRAL SPECIES 3 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00530000063786.a.m ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00490000044176.b.b ##21 ENSGT00940000160975.g #22 ENSGT00950000183062.a.a.a ENSGT00940000153272.a.b.o.b.b ENSGT00940000160282 ENSGT00530000064266.e ENSGT00940000164367 ENSGT00390000017955.c.s.b ENSGT00940000156324 ENSGT00940000154477.i ENSGT00390000017040 ENSGT00930000151026.e.b ENSGT00940000155947 ENSGT00530000063353.a.b.b ENSGT00390000003428.x ENSGT00950000182832.B ENSGT00940000158913 Pan ANCESTRAL SPECIES 2 ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00530000063786.a.m ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000153510.a.f #19 ENSGT00940000158065 #20 ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.c.b.b ENSGT00940000160975.g #22 ENSGT00490000044176.b.b ##21 ENSGT00440000039029.g.b ENSGT00950000183062.a.a.a ENSGT00940000153272.a.b.o.b.b ENSGT00940000160282 ENSGT00530000064266.e ENSGT00940000164367 ENSGT00390000017955.c.s.b ENSGT00940000156324 ENSGT00940000154477.i ENSGT00390000017040 ENSGT00930000151026.e.b ENSGT00940000155947 ENSGT00530000063353.a.b.b ENSGT00390000003428.x Bonobo MODERN SPECIES 16 ARL6IP5 (ENSPPAG00000033634) LMOD3 (ENSPPAG00000033796) FRMD4B (ENSPPAG00000021170) MITF (ENSPPAG00000041237) ENSPPAG00000030278 MDFIC2 (ENSPPAG00000036914) FOXP1 (ENSPPAG00000039148) #13 ENSPPAG00000035020 #14 ENSPPAG00000038441 PROK2 (ENSPPAG00000038388) #15 RYBP (ENSPPAG00000039197) #17 SHQ1 (ENSPPAG00000027714) #18 ENSPPAG00000029534 GXYLT2 (ENSPPAG00000037639) #20 ENSPPAG00000009897 PPP4R2 (ENSPPAG00000042397) #22 EBLN2 (ENSPPAG00000043421) ##21 ENSPPAG00000022036 PDZRN3 (ENSPPAG00000037945) ENSPPAG00000020828 CNTN3 (ENSPPAG00000028261) ENSPPAG00000026052 HIC2 (ENSPPAG00000037732) FRG2C (ENSPPAG00000034046) ENSPPAG00000038879 ENSPPAG00000041147 ROBO2 (ENSPPAG00000042422) ROBO1 (ENSPPAG00000035480) GBE1 (ENSPPAG00000041824) ENSPPAG00000039117 CADM2 (ENSPPAG00000030715) Human MODERN SPECIES 15 TMF1 (ENSG00000144747) UBA3 (ENSG00000144744) ARL6IP5 (ENSG00000144746) LMOD3 (ENSG00000163380) FRMD4B (ENSG00000114541) MITF (ENSG00000187098) MDFIC2 (ENSG00000242120) FOXP1 (ENSG00000114861) #13 ENSG00000285708 EIF4E3 (ENSG00000163412) #14 GPR27 (ENSG00000170837) PROK2 (ENSG00000163421) #15 RYBP (ENSG00000163602) #17 SHQ1 (ENSG00000144736) #18 GXYLT2 (ENSG00000172986) #20 PPP4R2 (ENSG00000163605) #22 EBLN2 (ENSG00000255423) ##21 PDZRN3 (ENSG00000121440) CNTN3 (ENSG00000113805) FRG2C (ENSG00000172969) ZNF717 (ENSG00000227124) ROBO2 (ENSG00000185008) ROBO1 (ENSG00000169855) GBE1 (ENSG00000114480) CADM2 (ENSG00000175161) VGLL3 (ENSG00000206538) CHMP2B (ENSG00000083937) POU1F1 (ENSG00000064835) HTR1F (ENSG00000179097) CGGBP1 (ENSG00000163320) ENSG00000288654 Orangutan MODERN SPECIES 16 ENSPPYG00000038623 UBA3 (ENSPPYG00000013729) ARL6IP5 (ENSPPYG00000013728) LMOD3 (ENSPPYG00000013727) FRMD4B (ENSPPYG00000013726) MITF (ENSPPYG00000013725) MDFIC2 (ENSPPYG00000041220) FOXP1 (ENSPPYG00000013722) #13 EIF4E3 (ENSPPYG00000033784) #14 GPR27 (ENSPPYG00000013720) PROK2 (ENSPPYG00000013719) #15 RYBP (ENSPPYG00000033076) #17 SHQ1 (ENSPPYG00000013717) #18 ENSPPYG00000038319 GXYLT2 (ENSPPYG00000013716) #20 PPP4R2 (ENSPPYG00000013715) #22 PDZRN3 (ENSPPYG00000013713) CNTN3 (ENSPPYG00000013710) CHL1 (ENSPPYG00000013709) ENSPPYG00000013708 CNTN6 (ENSPPYG00000013706) ENSPPYG00000033051 CNTN4 (ENSPPYG00000013704) IL5RA (ENSPPYG00000013703) TRNT1 (ENSPPYG00000013702) CRBN (ENSPPYG00000013701) LRRN1 (ENSPPYG00000013700) SETMAR (ENSPPYG00000038930) SUMF1 (ENSPPYG00000013698) ITPR1 (ENSPPYG00000013697) BHLHE40 (ENSPPYG00000013696) Gibbon MODERN SPECIES 13 ARL6IP5 (ENSNLEG00000029362) LMOD3 (ENSNLEG00000002236) FRMD4B (ENSNLEG00000002248) MITF (ENSNLEG00000002357) ENSNLEG00000029106 ENSNLEG00000002490 MDFIC2 (ENSNLEG00000030576) FOXP1 (ENSNLEG00000002497) #13 ENSNLEG00000002684 #14 PROK2 (ENSNLEG00000002696) #15 RYBP (ENSNLEG00000031222) #17 SHQ1 (ENSNLEG00000002731) #18 ENSNLEG00000029680 GXYLT2 (ENSNLEG00000002790) #20 ENSNLEG00000035814 ##21 PPP4R2 (ENSNLEG00000029576) #22 PDZRN3 (ENSNLEG00000002833) ENSNLEG00000036254 CNTN3 (ENSNLEG00000002884) CHL1 (ENSNLEG00000002952) CNTN6 (ENSNLEG00000003079) ENSNLEG00000029240 ENSNLEG00000034611 CNTN4 (ENSNLEG00000003113) IL5RA (ENSNLEG00000003193) TRNT1 (ENSNLEG00000003226) CRBN (ENSNLEG00000003256) LRRN1 (ENSNLEG00000003325) ENSNLEG00000003327 SETMAR (ENSNLEG00000003331) SUMF1 (ENSNLEG00000003334) Hominoidea ANCESTRAL SPECIES ENSGT00940000160975.h #22 Hominidae ANCESTRAL SPECIES 70 ENSGT00910000144277.b.a.a.b ENSGT00940000160975.h #22 ENSGT00910000148453 Homo/Pan/Gorilla group ANCESTRAL SPECIES 73 ENSGT00910000144277.b.a.a.b ENSGT00940000160975.h #22 ENSGT00910000148453 Homo/Pan group ANCESTRAL SPECIES 186 ENSGT00910000144277.b.a.a.b ENSGT00940000160975.h #22 Pan DUPLICATION Pan DUPLICATION Pan ANCESTRAL SPECIES 144 ENSGT00910000144277.b.a.a.b ENSGT00940000160975.h.a.a #22 Chimpanzee MODERN SPECIES 16 WDR53 (ENSPTRG00000015782) SMCO1 (ENSPTRG00000034079) RNF168 (ENSPTRG00000045575) UBXN7 (ENSPTRG00000044067) TM4SF19 (ENSPTRG00000034184) DYNLT2B (ENSPTRG00000015777) PCYT1A (ENSPTRG00000049191) SLC51A (ENSPTRG00000015775) ZDHHC19 (ENSPTRG00000015774) TFRC (ENSPTRG00000015773) ENSPTRG00000046059 ENSPTRG00000048820 #22 TNK2 (ENSPTRG00000049620) ENSPTRG00000051786 ENSPTRG00000042759 ENSPTRG00000045271 #22 ENSPTRG00000042738 APOD (ENSPTRG00000030011) ENSPTRG00000051495 PPP1R2 (ENSPTRG00000043205) ACAP2 (ENSPTRG00000015762) XXYLT1 (ENSPTRG00000015761) FAM43A (ENSPTRG00000030013) LSG1 (ENSPTRG00000015760) TMEM44 (ENSPTRG00000015759) ATP13A3 (ENSPTRG00000015757) GP5 (ENSPTRG00000043108) LRRC15 (ENSPTRG00000015755) CPN2 (ENSPTRG00000030017) ENSPTRG00000046733 HES1 (ENSPTRG00000045020) Bonobo MODERN SPECIES 16 UBXN7 (ENSPPAG00000032351) RNF168 (ENSPPAG00000031865) WDR53 (ENSPPAG00000032049) FBXO45 (ENSPPAG00000028198) NRROS (ENSPPAG00000035083) CEP19 (ENSPPAG00000037796) PIGX (ENSPPAG00000027842) PAK2 (ENSPPAG00000035596) SENP5 (ENSPPAG00000041338) NCBP2 (ENSPPAG00000036789) NCBP2AS2 (ENSPPAG00000013217) PIGZ (ENSPPAG00000040999) MELTF (ENSPPAG00000032187) DLG1 (ENSPPAG00000033032) BDH1 (ENSPPAG00000033396) ENSPPAG00000033540 #22 RUBCN (ENSPPAG00000036932) FYTTD1 (ENSPPAG00000027558) LRCH3 (ENSPPAG00000040057) IQCG (ENSPPAG00000031983) RPL35A (ENSPPAG00000040989) LMLN (ENSPPAG00000040705) ENSPPAG00000034635 Pan ANCESTRAL SPECIES 2 ENSGT00940000163072 ENSGT00940000161771 ENSGT00940000162953 ENSGT00940000155941.A ENSGT00390000018718 ENSGT00940000156442 ENSGT00940000161593 ENSGT00940000158154 ENSGT00940000156389.a ENSGT00390000004757.`b.b.b.c ENSGT00940000167391 ENSGT00510000046981 ENSGT00730000111453.a ENSGT00730000110943.C ENSGT00940000160853 ENSGT00940000160975.h.a.b #22 ENSGT01030000234598.a.a.a ENSGT00940000161784 ENSGT00940000160780 ENSGT00940000157384 ENSGT00940000160019 ENSGT01030000234590.A.a.a ENSGT00390000018687 ENSGT00940000153680.a.pb.a ENSGT00940000153680.a.pb.b ENSGT00390000010564 ENSGT00390000011073 ENSGT01030000234629.D ENSGT00940000157975 ENSGT00390000016356 ENSGT00390000017679 Chimpanzee MODERN SPECIES 16 GP5 (ENSPTRG00000043108) ATP13A3 (ENSPTRG00000015757) TMEM44 (ENSPTRG00000015759) LSG1 (ENSPTRG00000015760) FAM43A (ENSPTRG00000030013) XXYLT1 (ENSPTRG00000015761) ACAP2 (ENSPTRG00000015762) PPP1R2 (ENSPTRG00000043205) ENSPTRG00000051495 APOD (ENSPTRG00000030011) ENSPTRG00000042738 ENSPTRG00000045271 #22 ENSPTRG00000042759 ENSPTRG00000051786 TNK2 (ENSPTRG00000049620) ENSPTRG00000048820 #22 ENSPTRG00000046059 TFRC (ENSPTRG00000015773) ZDHHC19 (ENSPTRG00000015774) SLC51A (ENSPTRG00000015775) PCYT1A (ENSPTRG00000049191) DYNLT2B (ENSPTRG00000015777) TM4SF19 (ENSPTRG00000034184) UBXN7 (ENSPTRG00000044067) RNF168 (ENSPTRG00000045575) SMCO1 (ENSPTRG00000034079) WDR53 (ENSPTRG00000015782) FBXO45 (ENSPTRG00000015783) NRROS (ENSPTRG00000015784) CEP19 (ENSPTRG00000015785) PIGX (ENSPTRG00000015786) Bonobo MODERN SPECIES 16 HES1 (ENSPPAG00000002074) ENSPPAG00000019511 CPN2 (ENSPPAG00000020911) LRRC15 (ENSPPAG00000029069) GP5 (ENSPPAG00000036894) ATP13A3 (ENSPPAG00000041433) TMEM44 (ENSPPAG00000038345) LSG1 (ENSPPAG00000029271) FAM43A (ENSPPAG00000004780) XXYLT1 (ENSPPAG00000043632) ACAP2 (ENSPPAG00000037793) PPP1R2 (ENSPPAG00000043836) ENSPPAG00000038309 APOD (ENSPPAG00000034555) ENSPPAG00000037120 ENSPPAG00000039163 #22 TFRC (ENSPPAG00000020743) ZDHHC19 (ENSPPAG00000043850) SLC51A (ENSPPAG00000028761) PCYT1A (ENSPPAG00000033606) DYNLT2B (ENSPPAG00000031700) ENSPPAG00000032070 UBXN7 (ENSPPAG00000032351) RNF168 (ENSPPAG00000031865) WDR53 (ENSPPAG00000032049) FBXO45 (ENSPPAG00000028198) NRROS (ENSPPAG00000035083) CEP19 (ENSPPAG00000037796) PIGX (ENSPPAG00000027842) PAK2 (ENSPPAG00000035596) SENP5 (ENSPPAG00000041338) Pan ANCESTRAL SPECIES ENSGT00940000160975.h.b #22 Chimpanzee MODERN SPECIES 18 TERT (ENSPTRG00000016696) ENSPTRG00000044900 SLC6A18 (ENSPTRG00000016695) SLC6A19 (ENSPTRG00000016694) SLC12A7 (ENSPTRG00000016692) NKD2 (ENSPTRG00000016691) TRIP13 (ENSPTRG00000016689) ENSPTRG00000049307 ENSPTRG00000051847 TPPP (ENSPTRG00000048240) CEP72 (ENSPTRG00000016685) SLC9A3 (ENSPTRG00000016682) ENSPTRG00000050611 EXOC3 (ENSPTRG00000016680) ENSPTRG00000038919 ENSPTRG00000043303 #22 PDCD6 (ENSPTRG00000028788) SDHA (ENSPTRG00000016677) CCDC127 (ENSPTRG00000016674) LRRC14B (ENSPTRG00000016673) PLEKHG4B (ENSPTRG00000016672) Gorilla MODERN SPECIES 8 TERT (ENSGGOG00000002607) ENSGGOG00000038696 SLC6A19 (ENSGGOG00000007544) SLC12A7 (ENSGGOG00000009629) NKD2 (ENSGGOG00000004478) ENSGGOG00000011642 BRD9 (ENSGGOG00000034974) ENSGGOG00000022375 ZDHHC11B (ENSGGOG00000000349) TPPP (ENSGGOG00000000348) CEP72 (ENSGGOG00000010622) SLC9A3 (ENSGGOG00000013801) ENSGGOG00000013795 EXOC3 (ENSGGOG00000013711) AHRR (ENSGGOG00000013694) ENSGGOG00000022307 #22 ENSGGOG00000037863 CCDC127 (ENSGGOG00000002664) LRRC14B (ENSGGOG00000002663) PLEKHG4B (ENSGGOG00000002656) Orangutan DUPLICATION Orangutan DUPLICATION Orangutan MODERN SPECIES 16 ENSPPYG00000037677 ENSPPYG00000025903 #22 ENSPPYG00000019995 ENSPPYG00000016159 #22 ENSPPYG00000037899 ENSPPYG00000014432 APOD (ENSPPYG00000014430) PPP1R2 (ENSPPYG00000014429) ACAP2 (ENSPPYG00000014428) XXYLT1 (ENSPPYG00000014427) LSG1 (ENSPPYG00000014425) ENSPPYG00000033940 TMEM44 (ENSPPYG00000029512) ENSPPYG00000033896 ATP13A3 (ENSPPYG00000014423) GP5 (ENSPPYG00000014422) LRRC15 (ENSPPYG00000014421) CPN2 (ENSPPYG00000014420) HES1 (ENSPPYG00000030041) Orangutan MODERN SPECIES 23 WDR53 (ENSPPYG00000014443) FBXO45 (ENSPPYG00000038968) NRROS (ENSPPYG00000014444) CEP19 (ENSPPYG00000035598) PIGX (ENSPPYG00000030638) PAK2 (ENSPPYG00000014447) SENP5 (ENSPPYG00000014448) NCBP2 (ENSPPYG00000014449) ENSPPYG00000014450 PIGZ (ENSPPYG00000014451) MELTF (ENSPPYG00000014453) DLG1 (ENSPPYG00000014454) BDH1 (ENSPPYG00000034116) MUC20 (ENSPPYG00000030066) ENSPPYG00000015321 ENSPPYG00000014466 #22 ENSPPYG00000037391 ENSPPYG00000014455 FYTTD1 (ENSPPYG00000014456) LRCH3 (ENSPPYG00000014457) IQCG (ENSPPYG00000014458) RPL35A (ENSPPYG00000030262) LMLN (ENSPPYG00000014460) ENSPPYG00000020036 ENSPPYG00000038291 Orangutan MODERN SPECIES 16 ENSPPYG00000037677 ENSPPYG00000025903 #22 ENSPPYG00000019995 ENSPPYG00000016159 #22 ENSPPYG00000037899 ENSPPYG00000014432 APOD (ENSPPYG00000014430) PPP1R2 (ENSPPYG00000014429) ACAP2 (ENSPPYG00000014428) XXYLT1 (ENSPPYG00000014427) LSG1 (ENSPPYG00000014425) ENSPPYG00000033940 TMEM44 (ENSPPYG00000029512) ENSPPYG00000033896 ATP13A3 (ENSPPYG00000014423) GP5 (ENSPPYG00000014422) LRRC15 (ENSPPYG00000014421) Gibbon MODERN SPECIES 402 ENSNLEG00000015686 #22 Platyrrhini ANCESTRAL SPECIES 18 ENSGT00390000010697 ENSGT00550000074831.c ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000153510.a.f #19 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00490000044176 #21 ENSGT00940000162859 ENSGT00950000183062.a.a.a ENSGT00940000169558 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00440000033232.c ENSGT00390000008983.a ENSGT00940000155071.E Cebidae ANCESTRAL SPECIES 14 ENSGT00390000010697 ENSGT00550000074831.c ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000153510.a.f #19 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00490000044176 #21 ENSGT00950000183062.a.a.a ENSGT00940000169558 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00440000033232.c ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 Marmoset MODERN SPECIES 6 FRMD4B (ENSCJAG00000013312) MITF (ENSCJAG00000013260) MDFIC2 (ENSCJAG00000064939) ENSCJAG00000072251 FOXP1 (ENSCJAG00000013138) #13 ENSCJAG00000044237 #14 GPR27 (ENSCJAG00000040260) PROK2 (ENSCJAG00000080226) #15 ENSCJAG00000074041 ENSCJAG00000079742 ENSCJAG00000083199 RYBP (ENSCJAG00000053393) #17 SHQ1 (ENSCJAG00000015131) #18 ENSCJAG00000075002 GXYLT2 (ENSCJAG00000015146) #20 PPP4R2 (ENSCJAG00000041360) #22 ENSCJAG00000079111 PDZRN3 (ENSCJAG00000015181) ENSCJAG00000070041 ENSCJAG00000080600 ENSCJAG00000015202 CNTN3 (ENSCJAG00000015217) ENSCJAG00000077178 ENSCJAG00000082047 CHL1 (ENSCJAG00000015257) ENSCJAG00000084962 CNTN6 (ENSCJAG00000015346) ENSCJAG00000023368 CNTN4 (ENSCJAG00000015394) ENSCJAG00000086653 IL5RA (ENSCJAG00000015437) Cebidae_a ANCESTRAL SPECIES 24 ENSGT00390000010697 ENSGT00550000074831.c ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000153510.a.f #19 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00490000044176 #21 ENSGT00950000183062.a.a.a ENSGT00940000169558 ENSGT00940000160282 ENSGT00940000160080 Capuchin MODERN SPECIES 152 EIF4E3 (ENSCCAG00000002248) #14 GPR27 (ENSCCAG00000032437) PROK2 (ENSCCAG00000020540) #15 RYBP (ENSCCAG00000025583) #17 ENSCCAG00000027080 #18 ENSCCAG00000035805 #19 GXYLT2 (ENSCCAG00000023840) #20 PPP4R2 (ENSCCAG00000023322) #22 ENSCCAG00000008412 PDZRN3 (ENSCCAG00000028868) ENSCCAG00000028882 CNTN3 (ENSCCAG00000032568) CHL1 (ENSCCAG00000031503) Bolivian squirrel monkey MODERN SPECIES 156 TMF1 (ENSSBOG00000024217) ENSSBOG00000028598 ARL6IP5 (ENSSBOG00000033916) LMOD3 (ENSSBOG00000031092) FRMD4B (ENSSBOG00000029694) MITF (ENSSBOG00000023784) MDFIC2 (ENSSBOG00000022036) FOXP1 (ENSSBOG00000027035) #13 EIF4E3 (ENSSBOG00000020647) #14 PROK2 (ENSSBOG00000029837) #15 RYBP (ENSSBOG00000024112) #17 SHQ1 (ENSSBOG00000021038) #18 ENSSBOG00000030665 #19 GXYLT2 (ENSSBOG00000021809) #20 ENSSBOG00000030623 #21 PPP4R2 (ENSSBOG00000018839) #22 PDZRN3 (ENSSBOG00000029197) CNTN3 (ENSSBOG00000013155) Tarsier MODERN SPECIES 6169 SHQ1 (ENSTSYG00000014439) #18 GXYLT2 (ENSTSYG00000004237) #20 PPP4R2 (ENSTSYG00000030912) #22 Strepsirrhini ANCESTRAL SPECIES 1 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00650000094763 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Lemuriformes ANCESTRAL SPECIES 73 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Mouse lemur DUPLICATION Mouse lemur MODERN SPECIES 169 ENSMICG00000015126 ZNF280C (ENSMICG00000010604) RAB33A (ENSMICG00000034851) ENSMICG00000016006 ELF4 (ENSMICG00000007427) BCORL1 (ENSMICG00000015994) ENSMICG00000005161 ENSMICG00000032019 ZDHHC9 (ENSMICG00000015847) SASH3 (ENSMICG00000026483) XPNPEP2 (ENSMICG00000015814) ENSMICG00000036721 APLN (ENSMICG00000043883) OCRL (ENSMICG00000015790) SMARCA1 (ENSMICG00000015768) ENSMICG00000027085 #22 ENSMICG00000037227 ENSMICG00000026701 ENSMICG00000042684 ENSMICG00000011704 PRR32 (ENSMICG00000000543) DCAF12L2 (ENSMICG00000004409) ENSMICG00000042966 ENSMICG00000044524 TENM1 (ENSMICG00000007903) SH2D1A (ENSMICG00000043770) ENSMICG00000037954 ENSMICG00000048037 THOC2 (ENSMICG00000011840) GRIA3 (ENSMICG00000013350) ENSMICG00000035616 Mouse lemur MODERN SPECIES 25 NHP2 (ENSMICG00000005379) HNRNPAB (ENSMICG00000027030) PHYKPL (ENSMICG00000005397) COL23A1 (ENSMICG00000005409) CLK4 (ENSMICG00000038063) ZNF354A (ENSMICG00000006390) MITF (ENSMICG00000002894) MDFIC2 (ENSMICG00000032034) FOXP1 (ENSMICG00000005350) #13 EIF4E3 (ENSMICG00000001125) #14 GPR27 (ENSMICG00000032202) PROK2 (ENSMICG00000001127) #15 RYBP (ENSMICG00000045355) #17 SHQ1 (ENSMICG00000009224) #18 GXYLT2 (ENSMICG00000036477) #20 ENSMICG00000042500 #22 PDZRN3 (ENSMICG00000028272) ENSMICG00000038029 CNTN3 (ENSMICG00000006231) CHL1 (ENSMICG00000010518) CNTN6 (ENSMICG00000001000) Lemuriformes_a ANCESTRAL SPECIES 226 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d Greater bamboo lemur MODERN SPECIES 517 ENSPSMG00000020653 ##17 SHQ1 (ENSPSMG00000020670) #18 GXYLT2 (ENSPSMG00000020684) #20 PPP4R2 (ENSPSMG00000020721) #22 ENSPSMG00000020728 PDZRN3 (ENSPSMG00000020752) CNTN3 (ENSPSMG00000020848) CHL1 (ENSPSMG00000021246) CNTN6 (ENSPSMG00000021379) CNTN4 (ENSPSMG00000021437) IL5RA (ENSPSMG00000021478) TRNT1 (ENSPSMG00000021486) CRBN (ENSPSMG00000021499) Coquerels sifaka MODERN SPECIES 546 SHQ1 (ENSPCOG00000008415) #18 GXYLT2 (ENSPCOG00000020037) #20 PPP4R2 (ENSPCOG00000019123) #22 ENSPCOG00000001429 PDZRN3 (ENSPCOG00000016028) CNTN3 (ENSPCOG00000016325) Bushbaby MODERN SPECIES 130 UBA3 (ENSOGAG00000007771) ARL6IP5 (ENSOGAG00000007773) LMOD3 (ENSOGAG00000002704) FRMD4B (ENSOGAG00000002705) MITF (ENSOGAG00000000043) MDFIC2 (ENSOGAG00000030030) FOXP1 (ENSOGAG00000008367) #13 ENSOGAG00000027936 EIF4E3 (ENSOGAG00000014590) #14 GPR27 (ENSOGAG00000032511) PROK2 (ENSOGAG00000014593) #15 ENSOGAG00000033425 ENSOGAG00000030955 SHQ1 (ENSOGAG00000003898) #18 GXYLT2 (ENSOGAG00000006647) #20 PPP4R2 (ENSOGAG00000011001) #22 PDZRN3 (ENSOGAG00000031641) CNTN3 (ENSOGAG00000017171) CHL1 (ENSOGAG00000012057) CNTN6 (ENSOGAG00000002731) CNTN4 (ENSOGAG00000007059) IL5RA (ENSOGAG00000007069) CRBN (ENSOGAG00000007077) ENSOGAG00000033945 ENSOGAG00000030861 LRRN1 (ENSOGAG00000027599) ENSOGAG00000024973 SUMF1 (ENSOGAG00000003702) ITPR1 (ENSOGAG00000003704) BHLHE40 (ENSOGAG00000029762) ARL8B (ENSOGAG00000026863) Euarchontoglires_A ANCESTRAL SPECIES ENSGT00940000160975 #22 Glires ANCESTRAL SPECIES 2 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00650000094763 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00940000162859 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 Rodentia ANCESTRAL SPECIES ENSGT00940000160975 #22 Rodentia_B ANCESTRAL SPECIES ENSGT00940000160975 #22 Myomorpha ANCESTRAL SPECIES ENSGT00940000160975 #22 Muroidea ANCESTRAL SPECIES ENSGT00940000160975 #22 Muroidea_A ANCESTRAL SPECIES ENSGT00940000160975 #22 Cricetidae ANCESTRAL SPECIES ENSGT00940000160975 #22 Cricetidae_B ANCESTRAL SPECIES 14 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00960000189964 ENSGT00940000158384 ENSGT00940000154861 Prairie vole MODERN SPECIES 84 Eogt (ENSMOCG00000010159) Tmf1 (ENSMOCG00000021252) Uba3 (ENSMOCG00000022540) Arl6ip5 (ENSMOCG00000012711) Lmod3 (ENSMOCG00000013878) Frmd4b (ENSMOCG00000016753) Mitf (ENSMOCG00000021092) Mdfic2 (ENSMOCG00000007282) Foxp1 (ENSMOCG00000013376) #13 Eif4e3 (ENSMOCG00000020297) #14 Gpr27 (ENSMOCG00000010723) Prok2 (ENSMOCG00000016202) #15 ENSMOCG00000006102 #17 Shq1 (ENSMOCG00000017836) #18 Gxylt2 (ENSMOCG00000001994) #20 ENSMOCG00000000955 #22 Pdzrn3 (ENSMOCG00000015544) ENSMOCG00000009808 Cntn3 (ENSMOCG00000007453) ENSMOCG00000021562 ENSMOCG00000002512 ENSMOCG00000020899 ENSMOCG00000016932 ENSMOCG00000009333 Cntn6 (ENSMOCG00000005399) Cntn4 (ENSMOCG00000013257) Il5ra (ENSMOCG00000015311) Trnt1 (ENSMOCG00000004539) Crbn (ENSMOCG00000019318) Lrrn1 (ENSMOCG00000001702) Setmar (ENSMOCG00000003026) Northern American deer mouse MODERN SPECIES ENSPEMG00000019540 #17 ENSPEMG00000021688 ENSPEMG00000000548 ENSPEMG00000024919 ENSPEMG00000018342 ENSPEMG00000028740 ENSPEMG00000029967 ENSPEMG00000025273 ENSPEMG00000028275 ENSPEMG00000025523 ENSPEMG00000024355 ENSPEMG00000025043 ENSPEMG00000028567 ENSPEMG00000027791 ENSPEMG00000030555 ENSPEMG00000008070 #22 ENSPEMG00000029750 ENSPEMG00000024445 ENSPEMG00000026357 ENSPEMG00000030918 AU018091 (ENSPEMG00000015126) ENSPEMG00000024897 Nlrp12 (ENSPEMG00000002446) Myadm (ENSPEMG00000030719) Prkcg (ENSPEMG00000002232) Cacng7 (ENSPEMG00000011947) Cacng8 (ENSPEMG00000000270) Cacng6 (ENSPEMG00000008282) ENSPEMG00000030950 Tarm1 (ENSPEMG00000014350) ENSPEMG00000026873 Upper Galilee mountains blind mole rat MODERN SPECIES 763 Eif4e3 (ENSNGAG00000000837) #14 Gpr27 (ENSNGAG00000004137) Prok2 (ENSNGAG00000020136) #15 Rybp (ENSNGAG00000006529) #17 Shq1 (ENSNGAG00000023317) #18 Gxylt2 (ENSNGAG00000003681) #20 ENSNGAG00000023250 #22 Pdzrn3 (ENSNGAG00000023079) Cntn3 (ENSNGAG00000022686) Lesser Egyptian jerboa MODERN SPECIES 45 ENSJJAG00000017710 Slc27a6 (ENSJJAG00000020519) Isoc1 (ENSJJAG00000019157) Adamts19 (ENSJJAG00000021431) Minar2 (ENSJJAG00000000279) Frmd4b (ENSJJAG00000023390) Mitf (ENSJJAG00000018472) Mdfic2 (ENSJJAG00000012963) Foxp1 (ENSJJAG00000022621) #13 Eif4e3 (ENSJJAG00000002638) #14 Gpr27 (ENSJJAG00000011153) Prok2 (ENSJJAG00000021320) #15 Rybp (ENSJJAG00000017045) #17 Shq1 (ENSJJAG00000017611) #18 Gxylt2 (ENSJJAG00000013774) #20 ENSJJAG00000022712 #22 Pdzrn3 (ENSJJAG00000000291) Cntn3 (ENSJJAG00000012448) ENSJJAG00000000622 Chl1 (ENSJJAG00000020689) ENSJJAG00000017679 Cntn6 (ENSJJAG00000013679) ENSJJAG00000010075 Cntn4 (ENSJJAG00000023102) Il5ra (ENSJJAG00000010396) Trnt1 (ENSJJAG00000018561) Crbn (ENSJJAG00000011234) ENSJJAG00000004639 Lrrn1 (ENSJJAG00000021670) Setmar (ENSJJAG00000024359) Sumf1 (ENSJJAG00000014950) Rodentia_A ANCESTRAL SPECIES 27 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00650000094763 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Sciuridae ANCESTRAL SPECIES 41 ENSGT01020000230354.A.a ENSGT00940000159731 ENSGT00390000008631.a ENSGT00550000074831 ENSGT00390000010697 ENSGT00940000156493 ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Marmotini ANCESTRAL SPECIES 49 ENSGT01020000230354.A.a ENSGT00940000159731 ENSGT00390000008631.a ENSGT00550000074831 ENSGT00390000010697 ENSGT00940000156493 ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Alpin marmot MODERN SPECIES 10 ENSMMMG00000006135 LIPG (ENSMMMG00000006111) ACAA2 (ENSMMMG00000006091) MYO5B (ENSMMMG00000005915) CFAP53 (ENSMMMG00000005890) MBD1 (ENSMMMG00000005802) CXXC1 (ENSMMMG00000005766) SKA1 (ENSMMMG00000005747) MAPK4 (ENSMMMG00000005718) MRO (ENSMMMG00000005705) ME2 (ENSMMMG00000005680) ELAC1 (ENSMMMG00000005660) SMAD4 (ENSMMMG00000005628) MEX3C (ENSMMMG00000005613) DCC (ENSMMMG00000005526) ENSMMMG00000005475 #22 MBD2 (ENSMMMG00000005285) POLI (ENSMMMG00000005242) STARD6 (ENSMMMG00000005217) C18orf54 (ENSMMMG00000005170) ENSMMMG00000005165 RAB27B (ENSMMMG00000005138) CCDC68 (ENSMMMG00000005084) TCF4 (ENSMMMG00000004681) ENSMMMG00000004624 TXNL1 (ENSMMMG00000004568) WDR7 (ENSMMMG00000004539) ST8SIA3 (ENSMMMG00000004494) ONECUT2 (ENSMMMG00000004476) FECH (ENSMMMG00000004463) ENSMMMG00000004446 Marmotini_b ANCESTRAL SPECIES 188 ENSGT01020000230354.A.a ENSGT00940000159731 ENSGT00390000008631.a ENSGT00550000074831 ENSGT00390000010697 ENSGT00940000156493 ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 Squirrel MODERN SPECIES 203 TAFA1 (ENSSTOG00000014757) FRMD4B (ENSSTOG00000028861) LMOD3 (ENSSTOG00000026793) ARL6IP5 (ENSSTOG00000025065) UBA3 (ENSSTOG00000003215) TMF1 (ENSSTOG00000028312) EOGT (ENSSTOG00000003163) MITF (ENSSTOG00000005880) MDFIC2 (ENSSTOG00000021337) FOXP1 (ENSSTOG00000025624) #13 EIF4E3 (ENSSTOG00000020469) #14 PROK2 (ENSSTOG00000000976) #15 RYBP (ENSSTOG00000000185) #17 SHQ1 (ENSSTOG00000010043) #18 GXYLT2 (ENSSTOG00000010059) #20 PPP4R2 (ENSSTOG00000024451) #22 PDZRN3 (ENSSTOG00000020243) CNTN3 (ENSSTOG00000010775) Arctic ground squirrel MODERN SPECIES 106 FRMD4B (ENSUPAG00010021932) LMOD3 (ENSUPAG00010021929) ARL6IP5 (ENSUPAG00010021927) UBA3 (ENSUPAG00010021916) TMF1 (ENSUPAG00010021909) EOGT (ENSUPAG00010021904) MITF (ENSUPAG00010021833) MDFIC2 (ENSUPAG00010021824) FOXP1 (ENSUPAG00010021603) #13 EIF4E3 (ENSUPAG00010021594) #14 GPR27 (ENSUPAG00010021592) PROK2 (ENSUPAG00010021589) #15 RYBP (ENSUPAG00010021587) #17 SHQ1 (ENSUPAG00010021581) #18 GXYLT2 (ENSUPAG00010021574) #20 PPP4R2 (ENSUPAG00010021567) #22 PDZRN3 (ENSUPAG00010021559) CNTN3 (ENSUPAG00010021535) Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 10 FRMD4B (ENSSVLG00005012609) LMOD3 (ENSSVLG00005012544) ARL6IP5 (ENSSVLG00005012505) UBA3 (ENSSVLG00005012414) TMF1 (ENSSVLG00005012312) EOGT (ENSSVLG00005012215) MITF (ENSSVLG00005011612) MDFIC2 (ENSSVLG00005011514) FOXP1 (ENSSVLG00005010914) #13 EIF4E3 (ENSSVLG00005010716) #14 GPR27 (ENSSVLG00005010691) PROK2 (ENSSVLG00005010626) #15 RYBP (ENSSVLG00005010589) #17 SHQ1 (ENSSVLG00005010502) #18 GXYLT2 (ENSSVLG00005010448) #20 ENSSVLG00005010375 #22 PDZRN3 (ENSSVLG00005010337) ENSSVLG00005010270 CNTN3 (ENSSVLG00005025887) CHL1 (ENSSVLG00005025877) CNTN6 (ENSSVLG00005025861) CNTN4 (ENSSVLG00005025842) IL5RA (ENSSVLG00005025823) TRNT1 (ENSSVLG00005025808) CRBN (ENSSVLG00005025805) ENSSVLG00005025803 LRRN1 (ENSSVLG00005025801) ENSSVLG00005025798 SUMF1 (ENSSVLG00005025792) ITPR1 (ENSSVLG00005025774) BHLHE40 (ENSSVLG00005025741) Eurasian red squirrel MODERN SPECIES 13 ENSSVLG00005006853 ENSSVLG00005006820 ENSSVLG00005006809 ENSSVLG00005006795 DLG5 (ENSSVLG00005006751) POLR3A (ENSSVLG00005006708) ENSSVLG00005006601 ZMIZ1 (ENSSVLG00005006475) ENSSVLG00005006423 ZCCHC24 (ENSSVLG00005006394) ENSSVLG00005006356 ENSSVLG00005006337 ANXA11 (ENSSVLG00005006301) PLAC9 (ENSSVLG00005006256) TMEM254 (ENSSVLG00005006215) ENSSVLG00005006190 #22 ENSSVLG00005006135 ENSSVLG00005006106 ENSSVLG00005006085 ENSSVLG00005006056 ENSSVLG00005006036 ENSSVLG00005006012 ENSSVLG00005004436 SFTPD (ENSSVLG00005004412) ENSSVLG00005004372 ENSSVLG00005004335 MAT1A (ENSSVLG00005004294) DYDC1 (ENSSVLG00005004260) DYDC2 (ENSSVLG00005004236) PRXL2A (ENSSVLG00005004219) TSPAN14 (ENSSVLG00005004151) Hystricomorpha ANCESTRAL SPECIES 34 ENSGT00390000010697 ENSGT00550000074831.i ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00650000094763 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Hystricomorpha_a ANCESTRAL SPECIES 45 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831.i ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Hystricomorpha_b ANCESTRAL SPECIES 42 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831.i ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Long-tailed chinchilla MODERN SPECIES 128 EOGT (ENSCLAG00000004823) TMF1 (ENSCLAG00000004298) UBA3 (ENSCLAG00000003651) ARL6IP5 (ENSCLAG00000003471) LMOD3 (ENSCLAG00000006151) FRMD4B (ENSCLAG00000003792) ENSCLAG00000004383 MITF (ENSCLAG00000003365) MDFIC2 (ENSCLAG00000003152) FOXP1 (ENSCLAG00000004963) #13 EIF4E3 (ENSCLAG00000003818) #14 PROK2 (ENSCLAG00000003618) #15 RYBP (ENSCLAG00000006008) #17 SHQ1 (ENSCLAG00000004206) #18 GXYLT2 (ENSCLAG00000003908) #20 PPP4R2 (ENSCLAG00000003231) #22 PDZRN3 (ENSCLAG00000010964) CNTN3 (ENSCLAG00000009614) CHL1 (ENSCLAG00000006459) CNTN6 (ENSCLAG00000008602) CNTN4 (ENSCLAG00000006463) IL5RA (ENSCLAG00000005656) TRNT1 (ENSCLAG00000005186) CRBN (ENSCLAG00000004930) LRRN1 (ENSCLAG00000004896) ENSCLAG00000005640 SUMF1 (ENSCLAG00000004509) ITPR1 (ENSCLAG00000009445) BHLHE40 (ENSCLAG00000003841) ARL8B (ENSCLAG00000003184) EDEM1 (ENSCLAG00000004922) Degu MODERN SPECIES 133 PLA2G2F (ENSODEG00000015664) PLA2G2C (ENSODEG00000015836) VWA5B1 (ENSODEG00000015550) CAMK2N1 (ENSODEG00000015041) ENSODEG00000020299 MUL1 (ENSODEG00000015312) CDA (ENSODEG00000015598) PINK1 (ENSODEG00000015121) DDOST (ENSODEG00000015039) ENSODEG00000020313 KIF17 (ENSODEG00000015337) SH2D5 (ENSODEG00000015096) ENSODEG00000015109 ENSODEG00000014931 ENSODEG00000015879 ENSODEG00000016820 #22 ENSODEG00000014814 ENSODEG00000015534 ECE1 (ENSODEG00000016105) ALPL (ENSODEG00000014674) RAP1GAP (ENSODEG00000015689) USP48 (ENSODEG00000015315) ENSODEG00000014605 HSPG2 (ENSODEG00000015394) ENSODEG00000014629 ENSODEG00000014468 ENSODEG00000014833 CDC42 (ENSODEG00000015760) WNT4 (ENSODEG00000014777) ENSODEG00000014387 ENSODEG00000020316 Guinea pig MODERN SPECIES 16 EOGT (ENSCPOG00000013299) TMF1 (ENSCPOG00000013302) UBA3 (ENSCPOG00000030763) ARL6IP5 (ENSCPOG00000033968) LMOD3 (ENSCPOG00000013314) FRMD4B (ENSCPOG00000037444) MITF (ENSCPOG00000014963) MDFIC2 (ENSCPOG00000036240) FOXP1 (ENSCPOG00000003726) #13 EIF4E3 (ENSCPOG00000000391) #14 PROK2 (ENSCPOG00000033908) #15 RYBP (ENSCPOG00000032177) #17 SHQ1 (ENSCPOG00000011443) #18 GXYLT2 (ENSCPOG00000000442) #20 ENSCPOG00000030150 PPP4R2 (ENSCPOG00000036245) #22 PDZRN3 (ENSCPOG00000030488) CNTN3 (ENSCPOG00000003218) CHL1 (ENSCPOG00000014986) CNTN6 (ENSCPOG00000001124) CNTN4 (ENSCPOG00000026863) Il5ra (ENSCPOG00000007845) TRNT1 (ENSCPOG00000007849) CRBN (ENSCPOG00000007851) LRRN1 (ENSCPOG00000006583) ENSCPOG00000019854 SUMF1 (ENSCPOG00000014854) ITPR1 (ENSCPOG00000005053) BHLHE40 (ENSCPOG00000004014) ENSCPOG00000002434 ENSCPOG00000020709 Naked mole-rat female MODERN SPECIES 28 TMF1 (ENSHGLG00000013960) UBA3 (ENSHGLG00000019309) ARL6IP5 (ENSHGLG00000039284) LMOD3 (ENSHGLG00000019110) FRMD4B (ENSHGLG00000003001) MITF (ENSHGLG00000002575) MDFIC2 (ENSHGLG00000043866) FOXP1 (ENSHGLG00000002984) #13 ENSHGLG00000040329 EIF4E3 (ENSHGLG00000019560) #14 GPR27 (ENSHGLG00000002574) PROK2 (ENSHGLG00000046701) #15 RYBP (ENSHGLG00000040203) #17 SHQ1 (ENSHGLG00000003637) #18 GXYLT2 (ENSHGLG00000002778) #20 PPP4R2 (ENSHGLG00000002829) #22 PDZRN3 (ENSHGLG00000003072) ENSHGLG00000041798 ENSHGLG00000041034 ENSHGLG00000038372 ENSHGLG00000003660 ENSHGLG00000032578 ENSHGLG00000002080 ENSHGLG00000042664 ENSHGLG00000003621 CNTN6 (ENSHGLG00000003847) ENSHGLG00000038160 CNTN4 (ENSHGLG00000006279) IL5RA (ENSHGLG00000003211) ENSHGLG00000003649 CRBN (ENSHGLG00000003957) Lagomorpha ANCESTRAL SPECIES 11 ENSGT00940000159882 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 Rabbit MODERN SPECIES 20 UBA3 (ENSOCUG00000008169) ARL6IP5 (ENSOCUG00000008184) LMOD3 (ENSOCUG00000008188) FRMD4B (ENSOCUG00000002887) ENSOCUG00000026608 MITF (ENSOCUG00000002190) MDFIC2 (ENSOCUG00000031604) ENSOCUG00000036468 ENSOCUG00000035312 FOXP1 (ENSOCUG00000007155) #13 ENSOCUG00000000259 #14 PROK2 (ENSOCUG00000006542) #15 RYBP (ENSOCUG00000011730) #17 SHQ1 (ENSOCUG00000016695) #18 GXYLT2 (ENSOCUG00000016704) #20 PPP4R2 (ENSOCUG00000006235) #22 PDZRN3 (ENSOCUG00000007731) CNTN3 (ENSOCUG00000013181) ENSOCUG00000030000 ENSOCUG00000033110 ENSOCUG00000024463 ENSOCUG00000021210 ORYCUNV1R1530 (ENSOCUG00000038616) ZKSCAN8 (ENSOCUG00000006850) ZSCAN16 (ENSOCUG00000039537) ENSOCUG00000022648 ENSOCUG00000010081 ENSOCUG00000008926 ENSOCUG00000021038 ENSOCUG00000039076 ENSOCUG00000021613 Pika MODERN SPECIES 1907 ENSOPRG00000013963 #18 GXYLT2 (ENSOPRG00000013984) #20 PPP4R2 (ENSOPRG00000013993) #22 Laurasiatheria ANCESTRAL SPECIES 2 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00650000094763 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000165570 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 Laurasiatheria_a ANCESTRAL SPECIES 3 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00650000094763 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000165570 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 Artiodactyla ANCESTRAL SPECIES 2 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000165570 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT01000000221469 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 Suina ANCESTRAL SPECIES 1 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT01000000221469 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 Pig MODERN SPECIES 4 TMF1 (ENSSSCG00000011510) UBA3 (ENSSSCG00000011506) ARL6IP5 (ENSSSCG00000033154) LMOD3 (ENSSSCG00000052599) FRMD4B (ENSSSCG00000011511) MITF (ENSSSCG00000011514) ENSSSCG00000045079 MDFIC2 (ENSSSCG00000060340) FOXP1 (ENSSSCG00000027675) #13 EIF4E3 (ENSSSCG00000011516) #14 GPR27 (ENSSSCG00000036580) PROK2 (ENSSSCG00000026200) #15 RYBP (ENSSSCG00000025053) #17 SHQ1 (ENSSSCG00000011518) #18 GXYLT2 (ENSSSCG00000011519) #20 PPP4R2 (ENSSSCG00000037216) #22 ENSSSCG00000041059 PDZRN3 (ENSSSCG00000011521) ENSSSCG00000047927 ENSSSCG00000051504 ENSSSCG00000047664 CNTN3 (ENSSSCG00000011522) ENSSSCG00000048746 ENSSSCG00000058117 ENSSSCG00000048446 ENSSSCG00000050663 CHL1 (ENSSSCG00000011524) CNTN6 (ENSSSCG00000038152) ENSSSCG00000050505 CNTN4 (ENSSSCG00000011527) IL5RA (ENSSSCG00000011528) Chacoan peccary MODERN SPECIES 950 EOGT (ENSCWAG00000017579) TMF1 (ENSCWAG00000017660) UBA3 (ENSCWAG00000017763) ARL6IP5 (ENSCWAG00000018288) LMOD3 (ENSCWAG00000018312) FRMD4B (ENSCWAG00000018343) MITF (ENSCWAG00000018514) MDFIC2 (ENSCWAG00000019169) FOXP1 (ENSCWAG00000019255) #13 EIF4E3 (ENSCWAG00000020836) #14 GPR27 (ENSCWAG00000020855) PROK2 (ENSCWAG00000020863) #15 RYBP (ENSCWAG00000020884) #17 SHQ1 (ENSCWAG00000020894) #18 GXYLT2 (ENSCWAG00000020910) #20 PPP4R2 (ENSCWAG00000020926) #22 PDZRN3 (ENSCWAG00000020942) CNTN3 (ENSCWAG00000020972) CHL1 (ENSCWAG00000021043) CNTN6 (ENSCWAG00000021190) ENSCWAG00000021205 CNTN4 (ENSCWAG00000021224) IL5RA (ENSCWAG00000021262) TRNT1 (ENSCWAG00000021303) CRBN (ENSCWAG00000021315) LRRN1 (ENSCWAG00000021333) ENSCWAG00000021337 SUMF1 (ENSCWAG00000021351) ITPR1 (ENSCWAG00000021394) BHLHE40 (ENSCWAG00000021441) ARL8B (ENSCWAG00000021449) Artiodactyla_a ANCESTRAL SPECIES 18 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000165570 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT01000000221469 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 Artiodactyla_b ANCESTRAL SPECIES 21 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000165570 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT01000000221469 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 Cetacea ANCESTRAL SPECIES 7 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000006922.m.b.a.d ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT01000000221469 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 Odontoceti ANCESTRAL SPECIES 5 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000006922.m.b.a.d ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00390000012652.ab.a.k ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT01000000221469 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 Odontoceti_a ANCESTRAL SPECIES 5 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000006922.m.b.a.d ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00390000012652.ab.a.k ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT01000000221469 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 Odontoceti_b ANCESTRAL SPECIES 6 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000006922.m.b.a.d ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00390000012652.ab.a.k ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000168733 ENSGT00940000160080 ENSGT00940000160606 ENSGT01000000221469 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E Vaquita MODERN SPECIES 2 LMOD3 (ENSPSNG00000012275) ENSPSNG00000012258 FRMD4B (ENSPSNG00000012000) ENSPSNG00000011964 ENSPSNG00000011931 MITF (ENSPSNG00000011317) MDFIC2 (ENSPSNG00000011225) FOXP1 (ENSPSNG00000010176) #13 EIF4E3 (ENSPSNG00000009818) #14 GPR27 (ENSPSNG00000022094) PROK2 (ENSPSNG00000022078) #15 RYBP (ENSPSNG00000022051) #17 ENSPSNG00000022044 SHQ1 (ENSPSNG00000022028) #18 GXYLT2 (ENSPSNG00000022011) #20 PPP4R2 (ENSPSNG00000021989) #22 ENSPSNG00000021970 PDZRN3 (ENSPSNG00000021932) ENSPSNG00000021907 CNTN3 (ENSPSNG00000021869) ENSPSNG00000021840 CHL1 (ENSPSNG00000021694) CNTN6 (ENSPSNG00000021579) ENSPSNG00000021554 CNTN4 (ENSPSNG00000021522) IL5RA (ENSPSNG00000021430) TRNT1 (ENSPSNG00000021385) CRBN (ENSPSNG00000021316) LRRN1 (ENSPSNG00000021271) ENSPSNG00000021260 SUMF1 (ENSPSNG00000021203) Monodontidae ANCESTRAL SPECIES 4 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000006922.m.b.a.d ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00390000012652.ab.a.k ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000168733 ENSGT00940000160080 ENSGT00940000160606 ENSGT01000000221469 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E Narwhal MODERN SPECIES 310 UBA3 (ENSMMNG00015019640) ARL6IP5 (ENSMMNG00015019913) LMOD3 (ENSMMNG00015019939) FRMD4B (ENSMMNG00015019966) MITF (ENSMMNG00015020021) MDFIC2 (ENSMMNG00015020084) FOXP1 (ENSMMNG00015020256) #13 ENSMMNG00015020607 EIF4E3 (ENSMMNG00015020620) #14 GPR27 (ENSMMNG00015020647) PROK2 (ENSMMNG00015020659) #15 RYBP (ENSMMNG00015020675) #17 ENSMMNG00015020691 SHQ1 (ENSMMNG00015020699) #18 GXYLT2 (ENSMMNG00015020737) #20 PPP4R2 (ENSMMNG00015020763) #22 ENSMMNG00015020797 PDZRN3 (ENSMMNG00015020829) ENSMMNG00015020925 ENSMMNG00015020932 CNTN3 (ENSMMNG00015020954) ENSMMNG00015020993 CHL1 (ENSMMNG00015021112) CNTN6 (ENSMMNG00015021308) ENSMMNG00015021339 CNTN4 (ENSMMNG00015021354) IL5RA (ENSMMNG00015021373) TRNT1 (ENSMMNG00015021404) CRBN (ENSMMNG00015021425) LRRN1 (ENSMMNG00015021441) ENSMMNG00015021455 Dolphin MODERN SPECIES 3785 GXYLT2 (ENSTTRG00000000019) #20 PPP4R2 (ENSTTRG00000000018) #22 Sperm whale MODERN SPECIES 9 UBA3 (ENSPCTG00005010435) ARL6IP5 (ENSPCTG00005010327) LMOD3 (ENSPCTG00005010268) FRMD4B (ENSPCTG00005010026) ENSPCTG00005009977 MITF (ENSPCTG00005009685) MDFIC2 (ENSPCTG00005009636) FOXP1 (ENSPCTG00005009284) #13 EIF4E3 (ENSPCTG00005009184) #14 GPR27 (ENSPCTG00005009164) PROK2 (ENSPCTG00005009087) #15 RYBP (ENSPCTG00005008989) #17 ENSPCTG00005008959 SHQ1 (ENSPCTG00005017281) #18 GXYLT2 (ENSPCTG00005017189) #20 PPP4R2 (ENSPCTG00005017140) #22 ENSPCTG00005017126 ENSPCTG00005017078 PDZRN3 (ENSPCTG00005016884) ENSPCTG00005016762 CNTN3 (ENSPCTG00005016649) ENSPCTG00005016580 CHL1 (ENSPCTG00005016433) ENSPCTG00005016393 CNTN6 (ENSPCTG00005016124) CNTN4 (ENSPCTG00005011901) IL5RA (ENSPCTG00005011305) TRNT1 (ENSPCTG00005011251) CRBN (ENSPCTG00005011120) LRRN1 (ENSPCTG00005011097) ENSPCTG00005011064 Blue whale MODERN SPECIES 2 FRMD4B (ENSBMSG00010019228) ENSBMSG00010019343 ENSBMSG00010019371 ENSBMSG00010019391 MITF (ENSBMSG00010019612) MDFIC2 (ENSBMSG00010020784) ENSBMSG00010020804 FOXP1 (ENSBMSG00010021028) #13 EIF4E3 (ENSBMSG00010021929) #14 GPR27 (ENSBMSG00010021933) PROK2 (ENSBMSG00010021941) #15 RYBP (ENSBMSG00010021945) #17 ENSBMSG00010021950 SHQ1 (ENSBMSG00010021956) #18 GXYLT2 (ENSBMSG00010021967) #20 PPP4R2 (ENSBMSG00010021970) #22 PDZRN3 (ENSBMSG00010021981) ENSBMSG00010021985 ENSBMSG00010021989 CNTN3 (ENSBMSG00010021994) ENSBMSG00010022002 CHL1 (ENSBMSG00010022027) CNTN6 (ENSBMSG00010022054) CNTN4 (ENSBMSG00010022067) IL5RA (ENSBMSG00010022077) TRNT1 (ENSBMSG00010022089) CRBN (ENSBMSG00010022093) LRRN1 (ENSBMSG00010022098) ENSBMSG00010022101 SUMF1 (ENSBMSG00010022107) ENSBMSG00010022122 Pecora ANCESTRAL SPECIES 17 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000165570 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 Yarkand deer MODERN SPECIES 16 UBA3 (ENSCHYG00000023036) ARL6IP5 (ENSCHYG00000023632) LMOD3 (ENSCHYG00000023655) FRMD4B (ENSCHYG00000023741) ENSCHYG00000024354 ENSCHYG00000024373 MITF (ENSCHYG00000024471) MDFIC2 (ENSCHYG00000024686) ENSCHYG00000024728 FOXP1 (ENSCHYG00000024873) #13 EIF4E3 (ENSCHYG00000026240) #14 PROK2 (ENSCHYG00000026260) #15 RYBP (ENSCHYG00000026283) #17 SHQ1 (ENSCHYG00000026306) #18 GXYLT2 (ENSCHYG00000026357) #20 PPP4R2 (ENSCHYG00000026369) #22 PDZRN3 (ENSCHYG00000026403) CNTN3 (ENSCHYG00000026470) CHL1 (ENSCHYG00000026559) ENSCHYG00000026610 CNTN6 (ENSCHYG00000026622) ENSCHYG00000026685 ENSCHYG00000026687 CNTN4 (ENSCHYG00000026696) IL5RA (ENSCHYG00000026716) TRNT1 (ENSCHYG00000026731) CRBN (ENSCHYG00000026738) ENSCHYG00000026754 ENSCHYG00000026764 ENSCHYG00000026769 SUMF1 (ENSCHYG00000026779) Percora_a ANCESTRAL SPECIES 19 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000165570 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 Siberian musk deer MODERN SPECIES 1222 EOGT (ENSMMSG00000021538) TMF1 (ENSMMSG00000013641) UBA3 (ENSMMSG00000013729) ARL6IP5 (ENSMMSG00000013836) LMOD3 (ENSMMSG00000013861) FRMD4B (ENSMMSG00000013878) MITF (ENSMMSG00000013971) MDFIC2 (ENSMMSG00000014534) FOXP1 (ENSMMSG00000014620) #13 EIF4E3 (ENSMMSG00000015972) #14 GPR27 (ENSMMSG00000016039) PROK2 (ENSMMSG00000016060) #15 RYBP (ENSMMSG00000016107) #17 SHQ1 (ENSMMSG00000016133) #18 GXYLT2 (ENSMMSG00000016163) #20 PPP4R2 (ENSMMSG00000016216) #22 PDZRN3 (ENSMMSG00000016262) CNTN3 (ENSMMSG00000016378) ENSMMSG00000016517 CHL1 (ENSMMSG00000016568) Bovidae ANCESTRAL SPECIES 19 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000153886.a.a.k.b.b ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000165570 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 Caprinae ANCESTRAL SPECIES 15 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000153886.a.a.k.b.b ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000165570 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 Goat MODERN SPECIES 14 UBA3 (ENSCHIG00000015026) ARL6IP5 (ENSCHIG00000021517) LMOD3 (ENSCHIG00000017627) FRMD4B (ENSCHIG00000015488) ENSCHIG00000014889 MITF (ENSCHIG00000022111) MDFIC2 (ENSCHIG00000017880) FOXP1 (ENSCHIG00000017707) #13 EIF4E3 (ENSCHIG00000024333) #14 GPR27 (ENSCHIG00000006038) PROK2 (ENSCHIG00000020872) #15 ENSCHIG00000012364 RYBP (ENSCHIG00000026041) #17 SHQ1 (ENSCHIG00000012271) #18 GXYLT2 (ENSCHIG00000011713) #20 PPP4R2 (ENSCHIG00000006838) #22 PDZRN3 (ENSCHIG00000018984) ENSCHIG00000022511 CNTN3 (ENSCHIG00000015485) CHL1 (ENSCHIG00000015409) CNTN6 (ENSCHIG00000024913) CNTN4 (ENSCHIG00000018077) IL5RA (ENSCHIG00000011708) TRNT1 (ENSCHIG00000007030) CRBN (ENSCHIG00000022897) ENSCHIG00000017211 LRRN1 (ENSCHIG00000009563) ENSCHIG00000019739 SUMF1 (ENSCHIG00000026539) ITPR1 (ENSCHIG00000018318) BHLHE40 (ENSCHIG00000014557) Rambouillet Sheep MODERN SPECIES 10 EOGT (ENSOARG00020022578) TMF1 (ENSOARG00020022407) UBA3 (ENSOARG00020021782) ARL6IP5 (ENSOARG00020021679) LMOD3 (ENSOARG00020021653) ENSOARG00020021609 FRMD4B (ENSOARG00020021286) MITF (ENSOARG00020020821) MDFIC2 (ENSOARG00020020710) FOXP1 (ENSOARG00020017991) #13 GPR27 (ENSOARG00020017874) PROK2 (ENSOARG00020017771) #15 RYBP (ENSOARG00020017720) #17 SHQ1 (ENSOARG00020017477) #18 GXYLT2 (ENSOARG00020017381) #20 PPP4R2 (ENSOARG00020017177) #22 PDZRN3 (ENSOARG00020016919) CNTN3 (ENSOARG00020016622) CHL1 (ENSOARG00020015831) CNTN6 (ENSOARG00020015543) ENSOARG00020015490 CNTN4 (ENSOARG00020015064) TRNT1 (ENSOARG00020014826) CRBN (ENSOARG00020014355) ENSOARG00020014311 LRRN1 (ENSOARG00020014291) ENSOARG00020014205 SUMF1 (ENSOARG00020014038) ITPR1 (ENSOARG00020012519) BHLHE40 (ENSOARG00020012417) ARL8B (ENSOARG00020012288) Bovinae ANCESTRAL SPECIES 16 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000153886.a.a.k.b.b ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 American bison MODERN SPECIES 3333 EOGT (ENSBBBG00000025364) TMF1 (ENSBBBG00000008082) UBA3 (ENSBBBG00000007824) ENSBBBG00000000181 LMOD3 (ENSBBBG00000000194) FRMD4B (ENSBBBG00000006453) ENSBBBG00000006419 MITF (ENSBBBG00000009019) MDFIC2 (ENSBBBG00000006278) FOXP1 (ENSBBBG00000023930) #13 EIF4E3 (ENSBBBG00000023020) #14 PROK2 (ENSBBBG00000022995) #15 RYBP (ENSBBBG00000006031) #17 SHQ1 (ENSBBBG00000006026) #18 GXYLT2 (ENSBBBG00000022931) #20 PPP4R2 (ENSBBBG00000008134) #22 PDZRN3 (ENSBBBG00000022898) CNTN3 (ENSBBBG00000022837) CHL1 (ENSBBBG00000022795) CNTN6 (ENSBBBG00000022607) CNTN4 (ENSBBBG00000022563) IL5RA (ENSBBBG00000008533) Bos ANCESTRAL SPECIES 16 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000153886.a.a.k.b.b ENSGT00940000156326 ENSGT00390000004856.w.a.a.b.b.a.a ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026.b #15 ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.b.b.a.a.b ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT01100000263481.n.a.a.a.b.a.b.a.b.a.a.b.b.b.b ENSGT00940000160080 ENSGT00940000160606.b ENSGT00940000160606.a.a ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00940000162732 ENSGT00390000008983.a ENSGT00940000155071.E Bos_b ANCESTRAL SPECIES 17 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000153886.a.a.k.b.b ENSGT00940000156326 ENSGT00390000004856.w.a.a.b.b.a.a ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026.b #15 ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.b.b.a.a.b ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT01100000263481.n.a.a.a.b.a.b.a.b.a.a.b.b.b.b ENSGT00940000160080 ENSGT00940000160606.a.a ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00940000162732 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 Cow MODERN SPECIES 14 ARL6IP5 (ENSBTAG00000021506) LMOD3 (ENSBTAG00000021508) ENSBTAG00000013059 FRMD4B (ENSBTAG00000007624) MITF (ENSBTAG00000006679) ENSBTAG00000009220 MDFIC2 (ENSBTAG00000048900) FOXP1 (ENSBTAG00000016533) #13 EIF4E3 (ENSBTAG00000018862) #14 GPR27 (ENSBTAG00000053030) PROK2 (ENSBTAG00000019330) #15 ENSBTAG00000054670 RYBP (ENSBTAG00000022689) #17 SHQ1 (ENSBTAG00000005436) #18 GXYLT2 (ENSBTAG00000020481) #20 PPP4R2 (ENSBTAG00000002147) #22 PDZRN3 (ENSBTAG00000018644) CNTN3 (ENSBTAG00000007615) CHL1 (ENSBTAG00000002471) ENSBTAG00000006727 CNTN6 (ENSBTAG00000003592) CNTN4 (ENSBTAG00000033225) IL5RA (ENSBTAG00000000273) TRNT1 (ENSBTAG00000019534) CRBN (ENSBTAG00000019536) LRRN1 (ENSBTAG00000001176) SETMAR (ENSBTAG00000018935) ENSBTAG00000034496 SUMF1 (ENSBTAG00000039855) ITPR1 (ENSBTAG00000020455) BHLHE40 (ENSBTAG00000009863) Hybrid Bos Indicus MODERN SPECIES 14 LMOD3 (ENSBIXG00005031283) FRMD4B (ENSBIXG00005031293) ENSBIXG00005031301 ENSBIXG00005031303 MITF (ENSBIXG00005031308) ENSBIXG00005031312 MDFIC2 (ENSBIXG00005031313) FOXP1 (ENSBIXG00005031327) #13 EIF4E3 (ENSBIXG00005031340) #14 GPR27 (ENSBIXG00005031343) ENSBIXG00005031346 #15 RYBP (ENSBIXG00005031352) #17 SHQ1 (ENSBIXG00005031362) #18 ENSBIXG00005031363 GXYLT2 (ENSBIXG00005031365) #20 PPP4R2 (ENSBIXG00005031369) #22 PDZRN3 (ENSBIXG00005031380) CNTN3 (ENSBIXG00005031394) ENSBIXG00005031401 CHL1 (ENSBIXG00005031410) ENSBIXG00005031428 CNTN6 (ENSBIXG00005031434) CNTN4 (ENSBIXG00005031442) IL5RA (ENSBIXG00005031445) TRNT1 (ENSBIXG00005031446) CRBN (ENSBIXG00005031447) LRRN1 (ENSBIXG00005031456) ENSBIXG00005031458 SUMF1 (ENSBIXG00005031466) ENSBIXG00005031470 ENSBIXG00005031471 Bos_a ANCESTRAL SPECIES 9 ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.a.a ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00390000004856.w.a.a.b.b.a.a ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026.b #15 ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.b.b.a.a.b ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000165570 ENSGT00940000160282 ENSGT01100000263481.n.a.a.a.b.a.b.a.b.a.a.b.b.b.b ENSGT00940000160080 ENSGT00940000160606.b ENSGT00940000160606.a.a ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00940000162732 ENSGT00390000008983.a Wild yak MODERN SPECIES 2813 SHQ1 (ENSBMUG00000022905) #18 GXYLT2 (ENSBMUG00000022891) #20 PPP4R2 (ENSBMUG00000022881) #22 Domestic yak MODERN SPECIES 14 MITF (ENSBGRG00000018873) ENSBGRG00000019667 MDFIC2 (ENSBGRG00000019713) FOXP1 (ENSBGRG00000019865) #13 ENSBGRG00000021458 EIF4E3 (ENSBGRG00000021497) #14 GPR27 (ENSBGRG00000021670) PROK2 (ENSBGRG00000021693) #15 ENSBGRG00000021736 RYBP (ENSBGRG00000021759) #17 ENSBGRG00000021805 ENSBGRG00000021818 SHQ1 (ENSBGRG00000021832) #18 GXYLT2 (ENSBGRG00000021905) #20 ENSBGRG00000021987 PPP4R2 (ENSBGRG00000022002) #22 PDZRN3 (ENSBGRG00000022106) ENSBGRG00000022160 ENSBGRG00000022179 CNTN3 (ENSBGRG00000022216) ENSBGRG00000022415 CHL1 (ENSBGRG00000022502) CNTN6 (ENSBGRG00000022913) ENSBGRG00000022946 ENSBGRG00000022956 CNTN4 (ENSBGRG00000023008) IL5RA (ENSBGRG00000023363) TRNT1 (ENSBGRG00000023414) ENSBGRG00000023555 CRBN (ENSBGRG00000023591) LRRN1 (ENSBGRG00000023800) Camelidae ANCESTRAL SPECIES 7 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Arabian camel MODERN SPECIES 8 EOGT (ENSCDRG00005021103) TMF1 (ENSCDRG00005021118) UBA3 (ENSCDRG00005021145) ARL6IP5 (ENSCDRG00005021188) LMOD3 (ENSCDRG00005003378) FRMD4B (ENSCDRG00005003460) MITF (ENSCDRG00005003570) MDFIC2 (ENSCDRG00005003702) FOXP1 (ENSCDRG00005003812) #13 EIF4E3 (ENSCDRG00005005567) #14 GPR27 (ENSCDRG00005005582) PROK2 (ENSCDRG00005005609) #15 RYBP (ENSCDRG00005005642) #17 SHQ1 (ENSCDRG00005005675) #18 GXYLT2 (ENSCDRG00005005730) #20 PPP4R2 (ENSCDRG00005005747) #22 PDZRN3 (ENSCDRG00005005789) CNTN3 (ENSCDRG00005005902) ENSCDRG00005005931 CHL1 (ENSCDRG00005005966) CNTN6 (ENSCDRG00005006079) ENSCDRG00005006107 CNTN4 (ENSCDRG00005006128) TRNT1 (ENSCDRG00005006181) IL5RA (ENSCDRG00005006219) CRBN (ENSCDRG00005006474) LRRN1 (ENSCDRG00005006616) ENSCDRG00005006638 ENSCDRG00005006687 SUMF1 (ENSCDRG00005006754) ITPR1 (ENSCDRG00005006971) Alpaca MODERN SPECIES 933 SHQ1 (ENSVPAG00000004880) #18 GXYLT2 (ENSVPAG00000004882) #20 PPP4R2 (ENSVPAG00000004884) #22 ENSVPAG00000004885 CNTN3 (ENSVPAG00000004886) Laurasiatheria_b ANCESTRAL SPECIES 2 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00650000094763 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000165570 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 Carnivora ANCESTRAL SPECIES 6 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00650000094763 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000165570 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 Caniformia ANCESTRAL SPECIES 4 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00650000094763 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606.d ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Caniformia_b ANCESTRAL SPECIES 16 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00910000146944 ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606.d ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Ursidae ANCESTRAL SPECIES 11 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a.l ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00940000173944 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00390000000263.fb.a ENSGT00940000160080.b ENSGT00940000160606.d ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 Ursus ANCESTRAL SPECIES 89 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a.l ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00940000173944 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00390000000263.fb.a ENSGT00940000160080.b ENSGT00940000160606.d ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 American black bear MODERN SPECIES 6308 PPP4R2 (ENSUAMG00000012917) #22 Polar bear MODERN SPECIES 251 TMF1 (ENSUMAG00000023989) UBA3 (ENSUMAG00000023994) ARL6IP5 (ENSUMAG00000023996) LMOD3 (ENSUMAG00000023997) ENSUMAG00000023998 FRMD4B (ENSUMAG00000023999) MITF (ENSUMAG00000024001) MDFIC2 (ENSUMAG00000024017) FOXP1 (ENSUMAG00000024020) #13 EIF4E3 (ENSUMAG00000024023) #14 PROK2 (ENSUMAG00000024025) #15 RYBP (ENSUMAG00000024028) #17 ENSUMAG00000024029 SHQ1 (ENSUMAG00000024031) #18 GXYLT2 (ENSUMAG00000024033) #20 PPP4R2 (ENSUMAG00000024034) #22 PDZRN3 (ENSUMAG00000024035) CNTN3 (ENSUMAG00000024039) ENSUMAG00000024046 CHL1 (ENSUMAG00000024060) CNTN6 (ENSUMAG00000024080) CNTN4 (ENSUMAG00000024088) IL5RA (ENSUMAG00000024091) TRNT1 (ENSUMAG00000024092) CRBN (ENSUMAG00000024093) Giant Panda MODERN SPECIES 14 EOGT (ENSAMEG00000010169) TMF1 (ENSAMEG00000010131) UBA3 (ENSAMEG00000010117) ARL6IP5 (ENSAMEG00000010112) LMOD3 (ENSAMEG00000010109) FRMD4B (ENSAMEG00000010064) MITF (ENSAMEG00000017117) MDFIC2 (ENSAMEG00000025889) FOXP1 (ENSAMEG00000015051) #13 EIF4E3 (ENSAMEG00000015115) #14 PROK2 (ENSAMEG00000028947) #15 RYBP (ENSAMEG00000015131) #17 ENSAMEG00000015139 SHQ1 (ENSAMEG00000015140) #18 GXYLT2 (ENSAMEG00000015150) #20 PPP4R2 (ENSAMEG00000015164) #22 PDZRN3 (ENSAMEG00000025975) ENSAMEG00000011395 ENSAMEG00000023576 ENSAMEG00000013402 CNTN6 (ENSAMEG00000014259) CNTN4 (ENSAMEG00000014387) IL5RA (ENSAMEG00000014490) TRNT1 (ENSAMEG00000014520) CRBN (ENSAMEG00000014541) LRRN1 (ENSAMEG00000018835) ENSAMEG00000015893 SUMF1 (ENSAMEG00000015897) ITPR1 (ENSAMEG00000015900) BHLHE40 (ENSAMEG00000016060) ARL8B (ENSAMEG00000026834) Mustelinae ANCESTRAL SPECIES ENSGT00940000160975 #22 Ferret MODERN SPECIES 163 SUCLG2 (ENSMPUG00000016950) TAFA4 (ENSMPUG00000016951) EOGT (ENSMPUG00000016952) TMF1 (ENSMPUG00000016957) UBA3 (ENSMPUG00000016958) ARL6IP5 (ENSMPUG00000016965) LMOD3 (ENSMPUG00000016967) FRMD4B (ENSMPUG00000016969) MITF (ENSMPUG00000016972) FOXP1 (ENSMPUG00000017001) #13 EIF4E3 (ENSMPUG00000017002) #14 PROK2 (ENSMPUG00000017003) #15 RYBP (ENSMPUG00000017004) #17 SHQ1 (ENSMPUG00000017006) #18 GXYLT2 (ENSMPUG00000017007) #20 PPP4R2 (ENSMPUG00000017008) #22 PDZRN3 (ENSMPUG00000017009) ENSMPUG00000017010 CNTN3 (ENSMPUG00000017011) ENSMPUG00000020109 ENSMPUG00000017012 CHL1 (ENSMPUG00000017013) ENSMPUG00000020110 CNTN6 (ENSMPUG00000017014) CNTN4 (ENSMPUG00000017015) IL5RA (ENSMPUG00000017016) TRNT1 (ENSMPUG00000017017) CRBN (ENSMPUG00000017018) LRRN1 (ENSMPUG00000020111) ENSMPUG00000017019 ENSMPUG00000017021 Canidae ANCESTRAL SPECIES ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00650000094763 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606.d ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Canis_lupus ANCESTRAL SPECIES 1 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606.d ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Dingo MODERN SPECIES 401 ENSCAFG00020011853 EOGT (ENSCAFG00020011855) TMF1 (ENSCAFG00020011872) UBA3 (ENSCAFG00020012058) ARL6IP5 (ENSCAFG00020012069) LMOD3 (ENSCAFG00020012071) FRMD4B (ENSCAFG00020012082) MITF (ENSCAFG00020012176) MDFIC2 (ENSCAFG00020012180) FOXP1 (ENSCAFG00020012311) #13 EIF4E3 (ENSCAFG00020016724) #14 GPR27 (ENSCAFG00020016727) PROK2 (ENSCAFG00020016730) #15 RYBP (ENSCAFG00020016734) #17 SHQ1 (ENSCAFG00020016743) #18 PPP4R2 (ENSCAFG00020016753) #22 Dog MODERN SPECIES 12 EOGT (ENSCAFG00845010941) TMF1 (ENSCAFG00845010825) UBA3 (ENSCAFG00845010556) ARL6IP5 (ENSCAFG00845010437) LMOD3 (ENSCAFG00845010392) FRMD4B (ENSCAFG00845010033) MITF (ENSCAFG00845009666) MDFIC2 (ENSCAFG00845009570) FOXP1 (ENSCAFG00845008552) #13 ENSCAFG00845007732 #14 GPR27 (ENSCAFG00845007528) PROK2 (ENSCAFG00845007491) #15 ENSCAFG00845007398 #17 SHQ1 (ENSCAFG00845007261) #18 GXYLT2 (ENSCAFG00845007149) #20 PPP4R2 (ENSCAFG00845007022) #22 PDZRN3 (ENSCAFG00845006843) CNTN3 (ENSCAFG00845006575) ENSCAFG00845006474 ENSCAFG00845006445 ENSCAFG00845006097 CNTN6 (ENSCAFG00845005936) CNTN4 (ENSCAFG00845012710) IL5RA (ENSCAFG00845012603) TRNT1 (ENSCAFG00845012496) CRBN (ENSCAFG00845012410) ENSCAFG00845012385 LRRN1 (ENSCAFG00845012344) SETMAR (ENSCAFG00845012243) ENSCAFG00845012212 SUMF1 (ENSCAFG00845012121) Red fox MODERN SPECIES 5 EOGT (ENSVVUG00000014456) TMF1 (ENSVVUG00000014445) UBA3 (ENSVVUG00000014100) ARL6IP5 (ENSVVUG00000014070) LMOD3 (ENSVVUG00000014067) FRMD4B (ENSVVUG00000014012) MITF (ENSVVUG00000013975) MDFIC2 (ENSVVUG00000013970) FOXP1 (ENSVVUG00000013954) #13 ENSVVUG00000013952 ENSVVUG00000013947 #14 PROK2 (ENSVVUG00000013944) #15 RYBP (ENSVVUG00000013920) #17 SHQ1 (ENSVVUG00000013906) #18 GXYLT2 (ENSVVUG00000013899) #20 PPP4R2 (ENSVVUG00000013896) #22 ENSVVUG00000013883 ENSVVUG00000013879 CNTN3 (ENSVVUG00000013866) ENSVVUG00000013836 CHL1 (ENSVVUG00000013809) CNTN6 (ENSVVUG00000013018) CNTN4 (ENSVVUG00000012913) IL5RA (ENSVVUG00000012836) TRNT1 (ENSVVUG00000012810) CRBN (ENSVVUG00000012661) LRRN1 (ENSVVUG00000012640) ENSVVUG00000012624 ENSVVUG00000012619 SUMF1 (ENSVVUG00000012610) ENSVVUG00000011191 Felidae ANCESTRAL SPECIES 17 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000165570 ENSGT00940000160282 ENSGT00390000008694.b.b.d ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 Panthera ANCESTRAL SPECIES 1 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000165570 ENSGT00940000160282 ENSGT00390000008694.b.b.d ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 Panthera_a ANCESTRAL SPECIES ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000165570 ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 lion MODERN SPECIES 2 EOGT (ENSPLOG00000001756) TMF1 (ENSPLOG00000001823) UBA3 (ENSPLOG00000001974) ARL6IP5 (ENSPLOG00000002134) LMOD3 (ENSPLOG00000002158) FRMD4B (ENSPLOG00000002200) MITF (ENSPLOG00000002275) MDFIC2 (ENSPLOG00000002362) FOXP1 (ENSPLOG00000002481) #13 EIF4E3 (ENSPLOG00000002754) #14 GPR27 (ENSPLOG00000002789) PROK2 (ENSPLOG00000002807) #15 RYBP (ENSPLOG00000002820) #17 SHQ1 (ENSPLOG00000002849) #18 GXYLT2 (ENSPLOG00000002888) #20 PPP4R2 (ENSPLOG00000002914) #22 PDZRN3 (ENSPLOG00000003033) CNTN3 (ENSPLOG00000003083) CHL1 (ENSPLOG00000003228) ENSPLOG00000003473 CNTN6 (ENSPLOG00000003490) ENSPLOG00000003587 CNTN4 (ENSPLOG00000003617) IL5RA (ENSPLOG00000003728) TRNT1 (ENSPLOG00000003771) CRBN (ENSPLOG00000003808) LRRN1 (ENSPLOG00000003838) ENSPLOG00000003853 SUMF1 (ENSPLOG00000003874) ITPR1 (ENSPLOG00000003942) BHLHE40 (ENSPLOG00000004020) leopard MODERN SPECIES 116 MITF (ENSPPRG00000005395) MDFIC2 (ENSPPRG00000004980) FOXP1 (ENSPPRG00000004953) #13 EIF4E3 (ENSPPRG00000004898) #14 GPR27 (ENSPPRG00000012074) PROK2 (ENSPPRG00000004876) #15 RYBP (ENSPPRG00000004794) #17 SHQ1 (ENSPPRG00000004769) #18 ENSPPRG00000004671 GXYLT2 (ENSPPRG00000004662) #20 PPP4R2 (ENSPPRG00000004654) #22 PDZRN3 (ENSPPRG00000004645) ENSPPRG00000004594 CNTN3 (ENSPPRG00000004510) ENSPPRG00000004436 CHL1 (ENSPPRG00000004383) Tiger MODERN SPECIES 84 MITF (ENSPTIG00000018345) MDFIC2 (ENSPTIG00000018110) FOXP1 (ENSPTIG00000013377) #13 EIF4E3 (ENSPTIG00000012645) #14 PROK2 (ENSPTIG00000012482) #15 RYBP (ENSPTIG00000012035) #17 SHQ1 (ENSPTIG00000011478) #18 GXYLT2 (ENSPTIG00000010984) #20 PPP4R2 (ENSPTIG00000009981) #22 PDZRN3 (ENSPTIG00000009301) CNTN3 (ENSPTIG00000009144) CHL1 (ENSPTIG00000020653) CNTN6 (ENSPTIG00000020221) CNTN4 (ENSPTIG00000015205) IL5RA (ENSPTIG00000012294) TRNT1 (ENSPTIG00000011448) CRBN (ENSPTIG00000009377) LRRN1 (ENSPTIG00000003044) Cat MODERN SPECIES 1 TMF1 (ENSFCAG00000027162) UBA3 (ENSFCAG00000023111) ARL6IP5 (ENSFCAG00000041359) LMOD3 (ENSFCAG00000009020) FRMD4B (ENSFCAG00000009021) ENSFCAG00000034689 MITF (ENSFCAG00000024419) MDFIC2 (ENSFCAG00000026251) FOXP1 (ENSFCAG00000023059) #13 EIF4E3 (ENSFCAG00000025548) #14 GPR27 (ENSFCAG00000041717) PROK2 (ENSFCAG00000032697) #15 RYBP (ENSFCAG00000043691) #17 SHQ1 (ENSFCAG00000012781) #18 GXYLT2 (ENSFCAG00000011005) #20 PPP4R2 (ENSFCAG00000029481) #22 PDZRN3 (ENSFCAG00000040417) CNTN3 (ENSFCAG00000012778) ENSFCAG00000005652 CHL1 (ENSFCAG00000011105) ENSFCAG00000034166 CNTN6 (ENSFCAG00000015456) ENSFCAG00000052641 CNTN4 (ENSFCAG00000000649) IL5RA (ENSFCAG00000000652) TRNT1 (ENSFCAG00000026805) CRBN (ENSFCAG00000026512) LRRN1 (ENSFCAG00000029530) ENSFCAG00000037787 SUMF1 (ENSFCAG00000011512) ITPR1 (ENSFCAG00000002477) Laurasiatheria_c ANCESTRAL SPECIES 2 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Equus ANCESTRAL SPECIES 5 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 ENSGT00950000183062.a.a.a ENSGT00940000160282 ENSGT00940000160080 ENSGT00940000160606 ENSGT00940000155198.C ENSGT00940000160890 ENSGT00390000009678 ENSGT00390000016404 ENSGT00940000157154.d ENSGT00940000162663 ENSGT00390000008983.a ENSGT00940000155071.E ENSGT00940000158384 ENSGT00940000154861 ENSGT00940000157717 Donkey MODERN SPECIES 13 EOGT (ENSEASG00005001959) TMF1 (ENSEASG00005001971) UBA3 (ENSEASG00005002027) ARL6IP5 (ENSEASG00005031455) LMOD3 (ENSEASG00005002161) FRMD4B (ENSEASG00005002162) MITF (ENSEASG00005002172) MDFIC2 (ENSEASG00005002178) FOXP1 (ENSEASG00005002186) #13 EIF4E3 (ENSEASG00005002204) #14 GPR27 (ENSEASG00005027995) PROK2 (ENSEASG00005033363) #15 RYBP (ENSEASG00005029789) #17 SHQ1 (ENSEASG00005002237) #18 GXYLT2 (ENSEASG00005002247) #20 PPP4R2 (ENSEASG00005002252) #22 PDZRN3 (ENSEASG00005002263) ENSEASG00005002280 ENSEASG00005002560 ENSEASG00005032406 CNTN6 (ENSEASG00005003549) CNTN4 (ENSEASG00005003558) IL5RA (ENSEASG00005003564) TRNT1 (ENSEASG00005003577) CRBN (ENSEASG00005003584) LRRN1 (ENSEASG00005003592) ENSEASG00005032131 SUMF1 (ENSEASG00005003601) ITPR1 (ENSEASG00005004852) BHLHE40 (ENSEASG00005034761) ARL8B (ENSEASG00005023967) Horse MODERN SPECIES 7 TAFA4 (ENSECAG00000038857) EOGT (ENSECAG00000012398) TMF1 (ENSECAG00000023300) UBA3 (ENSECAG00000009659) LMOD3 (ENSECAG00000008709) FRMD4B (ENSECAG00000016131) MITF (ENSECAG00000005360) MDFIC2 (ENSECAG00000029574) ENSECAG00000054670 FOXP1 (ENSECAG00000008974) #13 EIF4E3 (ENSECAG00000004471) #14 GPR27 (ENSECAG00000032664) RYBP (ENSECAG00000000266) #17 SHQ1 (ENSECAG00000015673) #18 GXYLT2 (ENSECAG00000008483) #20 PPP4R2 (ENSECAG00000000689) #22 PDZRN3 (ENSECAG00000014864) CNTN3 (ENSECAG00000013575) CHL1 (ENSECAG00000024808) ENSECAG00000027842 CNTN6 (ENSECAG00000015975) CNTN4 (ENSECAG00000009769) IL5RA (ENSECAG00000022503) TRNT1 (ENSECAG00000014420) CRBN (ENSECAG00000015422) LRRN1 (ENSECAG00000002874) ENSECAG00000011514 SUMF1 (ENSECAG00000020242) ITPR1 (ENSECAG00000020933) BHLHE40 (ENSECAG00000015069) ARL8B (ENSECAG00000013084) Chiroptera ANCESTRAL SPECIES 49 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 Microchiroptera ANCESTRAL SPECIES 47 ENSGT00940000156493 ENSGT00390000010697 ENSGT00550000074831 ENSGT00390000008631.a ENSGT00940000159731 ENSGT01020000230354.A.a ENSGT00940000156326 ENSGT00730000111641 ENSGT00940000159892 #13 ENSGT00940000155865 #14 ENSGT00890000139436.A.a ENSGT00940000162026 #15 ENSGT00390000013995.b.a #17 ENSGT00390000007605 #18 ENSGT00940000158065 #20 ENSGT00940000160975 #22 Greater horseshoe bat MODERN SPECIES 8 ARL6IP5 (ENSRFEG00010015607) LMOD3 (ENSRFEG00010015673) FRMD4B (ENSRFEG00010015709) MITF (ENSRFEG00010015864) MDFIC2 (ENSRFEG00010016226) FOXP1 (ENSRFEG00010016312) #13 ENSRFEG00010016733 EIF4E3 (ENSRFEG00010016785) #14 GPR27 (ENSRFEG00010016845) PROK2 (ENSRFEG00010016865) #15 ENSRFEG00010016965 RYBP (ENSRFEG00010017002) #17 ENSRFEG00010017032 SHQ1 (ENSRFEG00010017046) #18 GXYLT2 (ENSRFEG00010017092) #20 PPP4R2 (ENSRFEG00010017298) #22 ENSRFEG00010017338 Microbat MODERN SPECIES 1569 GXYLT2 (ENSMLUG00000001654) #20 PPP4R2 (ENSMLUG00000012735) #22 Megabat MODERN SPECIES 1825 PPP4R2 (ENSPVAG00000004504) #22