Tetrapoda	ANCESTRAL SPECIES	23	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36	ENSGT00390000012816
Amniota	ANCESTRAL SPECIES	8	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Mammalia	ANCESTRAL SPECIES	26	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Theria	ANCESTRAL SPECIES	14	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Eutheria	ANCESTRAL SPECIES	12	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Glires	ANCESTRAL SPECIES	12	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Muroidea	ANCESTRAL SPECIES	16	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.g #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36	ENSGT00390000012816
Murinae	ANCESTRAL SPECIES	16	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.g #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36	ENSGT00390000012816
Rat	MODERN SPECIES	6	Styx (ENSRNOG00000007956) #7	Gnpnat1 (ENSRNOG00000008641) #8	Fermt2 (ENSRNOG00000009102) #9	LOC108353033 (ENSRNOG00000068233) #10	Ddhd1 (ENSRNOG00000009481) #11	Bmp4 (ENSRNOG00000009694) #12	Cdkn3 (ENSRNOG00000009785) #13	Cnih1 (ENSRNOG00000009811) #14	Gmfb (ENSRNOG00000064480) #15	Cgrrf1 (ENSRNOG00000010178) #16	Rpl39-ps12 (ENSRNOG00000029267) #17	Samd4a (ENSRNOG00000010489) #18	ENSRNOG00000070489 #19	Gch1 (ENSRNOG00000011039) #20	Wdhd1 (ENSRNOG00000011167) #21	Socs4 (ENSRNOG00000068183) #22	Mapk1ip1l (ENSRNOG00000011611) #23	Lgals3 (ENSRNOG00000010645) #24	Dlgap5 (ENSRNOG00000010721) #25	Fbxo34 (ENSRNOG00000011704) #26	Atg14 (ENSRNOG00000011873) #27	Ktn1 (ENSRNOG00000012255) #28	Peli2 (ENSRNOG00000012363) #29	Tmem260 (ENSRNOG00000013353) #30	Otx2 (ENSRNOG00000065063) #31	Exoc5 (ENSRNOG00000013804) #32	Ap5m1 (ENSRNOG00000014148) #33	Naa30 (ENSRNOG00000014192) #34	Ccdc198 (ENSRNOG00000062766) #35	Slc35f4 (ENSRNOG00000014982) #36	ENSRNOG00000067796 #37
Mus	ANCESTRAL SPECIES	8	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00860000135823	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.g #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36	ENSGT00390000012816
Mus_A	ANCESTRAL SPECIES	12	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00860000135823	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.g #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36	ENSGT00390000012816
Mus_B	ANCESTRAL SPECIES	11	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00860000135823	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.g #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b.e #26	ENSGT00390000011854 #27	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36	ENSGT00390000012816
Mouse	MODERN SPECIES	5	Gpr137c (ENSMUSG00000049092)	Ero1a (ENSMUSG00000021831)	Psmc6 (ENSMUSG00000021832)	Styx (ENSMUSG00000053205) #7	Gnpnat1 (ENSMUSG00000037722) #8	Fermt2 (ENSMUSG00000037712) #9	Ddhd1 (ENSMUSG00000037697) #11	Bmp4 (ENSMUSG00000021835) #12	Cdkn3 (ENSMUSG00000037628) #13	Cnih1 (ENSMUSG00000015759) #14	Gmfb (ENSMUSG00000062014) #15	Cgrrf1 (ENSMUSG00000055128) #16	Samd4 (ENSMUSG00000021838) #18	Gch1 (ENSMUSG00000037580) #20	Wdhd1 (ENSMUSG00000037572) #21	Socs4 (ENSMUSG00000048379) #22	Mapk1ip1l (ENSMUSG00000021840) #23	Lgals3 (ENSMUSG00000050335) #24	Dlgap5 (ENSMUSG00000037544) #25	Fbxo34 (ENSMUSG00000037536) #26	Atg14 (ENSMUSG00000037526) #27	Ktn1 (ENSMUSG00000021843) #28	Peli2 (ENSMUSG00000021846) #29	Tmem260 (ENSMUSG00000036339) #30	Otx2 (ENSMUSG00000021848) #31	Exoc5 (ENSMUSG00000061244) #32	Ap5m1 (ENSMUSG00000036291) #33	Naa30 (ENSMUSG00000036282) #34	ccdc198 (ENSMUSG00000021850) #35	Slc35f4 (ENSMUSG00000021852) #36	Armh4 (ENSMUSG00000036242)
Mus_C	ANCESTRAL SPECIES	26	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00860000135823	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.g #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b.e #26	ENSGT00390000011854 #27	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36	ENSGT00390000012816
Steppe mouse	MODERN SPECIES	2378															Wdhd1 (ENSMSIG00000017607) #21	Socs4 (ENSMSIG00000017597) #22	Mapk1ip1l (ENSMSIG00000017583) #23	Lgals3 (ENSMSIG00000017513) #24	Dlgap5 (ENSMSIG00000017481) #25	Fbxo34 (ENSMSIG00000017444) #26	Atg14 (ENSMSIG00000017425) #27
spretus	MODERN SPECIES	5	MGP_SPRETEiJ_G0020037 #9	MGP_SPRETEiJ_G0020038 #7	MGP_SPRETEiJ_G0020039 #7	Gnpnat1 (MGP_SPRETEiJ_G0020040) #8	MGP_SPRETEiJ_G0020041 #9	Ddhd1 (MGP_SPRETEiJ_G0020042) #11	MGP_SPRETEiJ_G0020043	Bmp4 (MGP_SPRETEiJ_G0020044) #12	Cdkn3 (MGP_SPRETEiJ_G0020045) #13	Cnih1 (MGP_SPRETEiJ_G0020046) #14	Gmfb (MGP_SPRETEiJ_G0020047) #15	Cgrrf1 (MGP_SPRETEiJ_G0020048) #16	Samd4 (MGP_SPRETEiJ_G0020049) #18	Gch1 (MGP_SPRETEiJ_G0020050) #20	Wdhd1 (MGP_SPRETEiJ_G0020051) #21	Socs4 (MGP_SPRETEiJ_G0020052) #22	Mapk1ip1l (MGP_SPRETEiJ_G0020053) #23	Lgals3 (MGP_SPRETEiJ_G0020054) #24	Dlgap5 (MGP_SPRETEiJ_G0020055) #25	Fbxo34 (MGP_SPRETEiJ_G0020056) #26	Atg14 (MGP_SPRETEiJ_G0020057) #27	Ktn1 (MGP_SPRETEiJ_G0020058) #28	Peli2 (MGP_SPRETEiJ_G0020059) #29	Tmem260 (MGP_SPRETEiJ_G0020060) #30	Otx2 (MGP_SPRETEiJ_G0020061) #31	Exoc5 (MGP_SPRETEiJ_G0020062) #32	Ap5m1 (MGP_SPRETEiJ_G0020063) #33	Naa30 (MGP_SPRETEiJ_G0020064) #34	ccdc198 (MGP_SPRETEiJ_G0020065) #35	Slc35f4 (MGP_SPRETEiJ_G0020066) #36	Armh4 (MGP_SPRETEiJ_G0020067)
Ryukyu mouse	MODERN SPECIES	5	Ero1a (MGP_CAROLIEiJ_G0019149)	Psmc6 (MGP_CAROLIEiJ_G0019150)	MGP_CAROLIEiJ_G0019151 #7	Gnpnat1 (MGP_CAROLIEiJ_G0019152) #8	Fermt2 (MGP_CAROLIEiJ_G0019153) #9	Ddhd1 (MGP_CAROLIEiJ_G0019154) #11	MGP_CAROLIEiJ_G0019155	Bmp4 (MGP_CAROLIEiJ_G0019156) #12	Cdkn3 (MGP_CAROLIEiJ_G0019157) #13	Cnih1 (MGP_CAROLIEiJ_G0019158) #14	Gmfb (MGP_CAROLIEiJ_G0019159) #15	Cgrrf1 (MGP_CAROLIEiJ_G0019160) #16	Samd4 (MGP_CAROLIEiJ_G0019161) #18	Gch1 (MGP_CAROLIEiJ_G0019162) #20	Wdhd1 (MGP_CAROLIEiJ_G0019163) #21	Socs4 (MGP_CAROLIEiJ_G0019164) #22	Mapk1ip1l (MGP_CAROLIEiJ_G0019165) #23	Lgals3 (MGP_CAROLIEiJ_G0019166) #24	Dlgap5 (MGP_CAROLIEiJ_G0019167) #25	Fbxo34 (MGP_CAROLIEiJ_G0019168) #26	Atg14 (MGP_CAROLIEiJ_G0019169) #27	Ktn1 (MGP_CAROLIEiJ_G0019170) #28	Peli2 (MGP_CAROLIEiJ_G0019171) #29	Tmem260 (MGP_CAROLIEiJ_G0019172) #30	Otx2 (MGP_CAROLIEiJ_G0019173) #31	Exoc5 (MGP_CAROLIEiJ_G0019174) #32	Ap5m1 (MGP_CAROLIEiJ_G0019175) #33	Naa30 (MGP_CAROLIEiJ_G0019176) #34	ccdc198 (MGP_CAROLIEiJ_G0019177) #35	Slc35f4 (MGP_CAROLIEiJ_G0019178) #36	Armh4 (MGP_CAROLIEiJ_G0019179)
Shrew mouse	MODERN SPECIES	21	Ero1a (MGP_PahariEiJ_G0030166)	Psmc6 (MGP_PahariEiJ_G0030167)	MGP_PahariEiJ_G0030168 #7	Gnpnat1 (MGP_PahariEiJ_G0030169) #8	Fermt2 (MGP_PahariEiJ_G0030170) #9	Ddhd1 (MGP_PahariEiJ_G0030171) #11	MGP_PahariEiJ_G0030172	Bmp4 (MGP_PahariEiJ_G0030173) #12	Cdkn3 (MGP_PahariEiJ_G0030174) #13	Cnih1 (MGP_PahariEiJ_G0030175) #14	Gmfb (MGP_PahariEiJ_G0030176) #15	Cgrrf1 (MGP_PahariEiJ_G0030177) #16	Samd4 (MGP_PahariEiJ_G0030178) #18	Gch1 (MGP_PahariEiJ_G0030179) #20	Wdhd1 (MGP_PahariEiJ_G0030180) #21	Socs4 (MGP_PahariEiJ_G0030181) #22	Mapk1ip1l (MGP_PahariEiJ_G0030182) #23	Lgals3 (MGP_PahariEiJ_G0030183) #24	Dlgap5 (MGP_PahariEiJ_G0030184) #25	Fbxo34 (MGP_PahariEiJ_G0030185) #26	Atg14 (MGP_PahariEiJ_G0030186) #27	Ktn1 (MGP_PahariEiJ_G0030187) #28	Peli2 (MGP_PahariEiJ_G0030188) #29	Tmem260 (MGP_PahariEiJ_G0030189) #30	Otx2 (MGP_PahariEiJ_G0030190) #31	Exoc5 (MGP_PahariEiJ_G0030191) #32	Ap5m1 (MGP_PahariEiJ_G0030192) #33	Naa30 (MGP_PahariEiJ_G0030193) #34	ccdc198 (MGP_PahariEiJ_G0030194) #35	Slc35f4 (MGP_PahariEiJ_G0030195) #36	Armh4 (MGP_PahariEiJ_G0030196)
Cricetidae	ANCESTRAL SPECIES	15	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a.qb #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.g #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36	ENSGT00390000012816
Cricetinae	ANCESTRAL SPECIES	35	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a.qb #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.g #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36	ENSGT00390000012816
Chinese hamster chok1gshd	MODERN SPECIES	238	Psmc6 (ENSCGRG00001012112)	ENSCGRG00001013467 #7	ENSCGRG00001013900 #7	ENSCGRG00001005375 #8	Fermt2 (ENSCGRG00001008287) #9	Ddhd1 (ENSCGRG00001011232) #11	Bmp4 (ENSCGRG00001012801) #12	Cdkn3 (ENSCGRG00001013177) #13	ENSCGRG00001014263 #14	Gmfb (ENSCGRG00001014721) #15	ENSCGRG00001016671	Cgrrf1 (ENSCGRG00001017098) #16	Samd4 (ENSCGRG00001012862) #18	Gch1 (ENSCGRG00001015725) #20	Wdhd1 (ENSCGRG00001017601) #21	Socs4 (ENSCGRG00001014960) #22	Mapk1ip1l (ENSCGRG00001021476) #23	Lgals3 (ENSCGRG00001022933) #24	Dlgap5 (ENSCGRG00001023300) #25	Fbxo34 (ENSCGRG00001001721) #26	Atg14 (ENSCGRG00001009322) #27	Ktn1 (ENSCGRG00001017019) #28	ENSCGRG00001011709	Peli2 (ENSCGRG00001012222) #29	Tmem260 (ENSCGRG00001012591) #30	Otx2 (ENSCGRG00001013006) #31	ENSCGRG00001000079	Exoc5 (ENSCGRG00001004866) #32	Ap5m1 (ENSCGRG00001008439) #33	Naa30 (ENSCGRG00001009917) #34	ccdc198 (ENSCGRG00001010407) #35
Golden Hamster	MODERN SPECIES	818	Gpr137c (ENSMAUG00000005444)	Ero1a (ENSMAUG00000003564)	Psmc6 (ENSMAUG00000007830)	ENSMAUG00000015893 #7	Gnpnat1 (ENSMAUG00000014287) #8	Fermt2 (ENSMAUG00000016050) #9	Ddhd1 (ENSMAUG00000011578) #11	Bmp4 (ENSMAUG00000001775) #12	Cdkn3 (ENSMAUG00000005025) #13	Cnih1 (ENSMAUG00000009093) #14	ENSMAUG00000009687 #15	ENSMAUG00000013754 #16	Samd4 (ENSMAUG00000014955) #18	Gch1 (ENSMAUG00000010931) #20	Wdhd1 (ENSMAUG00000012618) #21	Socs4 (ENSMAUG00000012486) #22	Mapk1ip1l (ENSMAUG00000011680) #23
Cricetidae_B	ANCESTRAL SPECIES	11	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a.qb #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.g #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36	ENSGT00390000012816
Northern American deer mouse	MODERN SPECIES	22	Ero1a (ENSPEMG00000023440)	Psmc6 (ENSPEMG00000023390)	ENSPEMG00000025520 #7	ENSPEMG00000024263 #8	ENSPEMG00000012304 #9	Ddhd1 (ENSPEMG00000024111) #11	Bmp4 (ENSPEMG00000023851) #12	ENSPEMG00000019526	Cdkn3 (ENSPEMG00000019482) #13	ENSPEMG00000019468 #14	Gmfb (ENSPEMG00000031033) #15	Cgrrf1 (ENSPEMG00000000025) #16	Samd4 (ENSPEMG00000020084) #18	Gch1 (ENSPEMG00000025920) #20	Wdhd1 (ENSPEMG00000009680) #21	Socs4 (ENSPEMG00000002858) #22	Mapk1ip1l (ENSPEMG00000024472) #23	Lgals3 (ENSPEMG00000001219) #24	ENSPEMG00000028434	Fbxo34 (ENSPEMG00000028511) #26	Atg14 (ENSPEMG00000011521) #27	Ktn1 (ENSPEMG00000015219) #28	Peli2 (ENSPEMG00000020035) #29	Tmem260 (ENSPEMG00000019694) #30	ENSPEMG00000031312	ENSPEMG00000015172	Otx2 (ENSPEMG00000030021) #31	Exoc5 (ENSPEMG00000006593) #32	Ap5m1 (ENSPEMG00000005193) #33	Naa30 (ENSPEMG00000000643) #34	ccdc198 (ENSPEMG00000023177) #35
Prairie vole	MODERN SPECIES	4	Ero1a (ENSMOCG00000010434)	Psmc6 (ENSMOCG00000016449)	ENSMOCG00000013233 #7	Gnpnat1 (ENSMOCG00000010140) #8	Fermt2 (ENSMOCG00000006988) #9	Ddhd1 (ENSMOCG00000020196) #11	Bmp4 (ENSMOCG00000021555) #12	ENSMOCG00000017303	Cdkn3 (ENSMOCG00000014227) #13	Cnih1 (ENSMOCG00000014115) #14	Gmfb (ENSMOCG00000004831) #15	Cgrrf1 (ENSMOCG00000015089) #16	Samd4 (ENSMOCG00000014893) #18	Gch1 (ENSMOCG00000022270) #20	Wdhd1 (ENSMOCG00000013032) #21	Socs4 (ENSMOCG00000000093) #22	Mapk1ip1l (ENSMOCG00000000105) #23	Lgals3 (ENSMOCG00000022866) #24	Dlgap5 (ENSMOCG00000021523) #25	Fbxo34 (ENSMOCG00000006547) #26	Atg14 (ENSMOCG00000000144) #27	ENSMOCG00000006238	ENSMOCG00000011281 #31	ENSMOCG00000007409	Exoc5 (ENSMOCG00000019782) #32	Ap5m1 (ENSMOCG00000021173) #33	ENSMOCG00000006129	Naa30 (ENSMOCG00000013852) #34	ccdc198 (ENSMOCG00000009305) #35	Slc35f4 (ENSMOCG00000007286) #36	Armh4 (ENSMOCG00000015938)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1068	Gpr137c (ENSNGAG00000000926)	Ero1a (ENSNGAG00000011254)	ENSNGAG00000014486	ENSNGAG00000018950 #7	Gnpnat1 (ENSNGAG00000017131) #8	Fermt2 (ENSNGAG00000012765) #9	Ddhd1 (ENSNGAG00000012147) #11	Bmp4 (ENSNGAG00000004531) #12	Cdkn3 (ENSNGAG00000000269) #13	ENSNGAG00000004898 #14	Gmfb (ENSNGAG00000015674) #15	Cgrrf1 (ENSNGAG00000012236) #16	Samd4 (ENSNGAG00000014981) #18	Gch1 (ENSNGAG00000001258) #20	Wdhd1 (ENSNGAG00000019249) #21	Socs4 (ENSNGAG00000016338) #22	ENSNGAG00000002812 #23	Lgals3 (ENSNGAG00000020150) #24	ENSNGAG00000019620	Fbxo34 (ENSNGAG00000016745) #26	Atg14 (ENSNGAG00000021004) #27	Tbpl2 (ENSNGAG00000002908)	Ktn1 (ENSNGAG00000014640) #28	ENSNGAG00000003555	Peli2 (ENSNGAG00000011043) #29	Tmem260 (ENSNGAG00000001126) #30	Otx2 (ENSNGAG00000015521) #31	Exoc5 (ENSNGAG00000000258) #32	Ap5m1 (ENSNGAG00000010113) #33	Naa30 (ENSNGAG00000007396) #34	ccdc198 (ENSNGAG00000016223) #35
Lesser Egyptian jerboa	MODERN SPECIES	41	Ero1a (ENSJJAG00000020750)	Psmc6 (ENSJJAG00000010940)	ENSJJAG00000011212 #7	ENSJJAG00000021953 #8	Fermt2 (ENSJJAG00000019920) #9	Ddhd1 (ENSJJAG00000023478) #11	ENSJJAG00000012414	Bmp4 (ENSJJAG00000005612) #12	Cdkn3 (ENSJJAG00000014203) #13	ENSJJAG00000022265 #14	Gmfb (ENSJJAG00000018778) #15	Cgrrf1 (ENSJJAG00000012678) #16	Samd4 (ENSJJAG00000022702) #18	Gch1 (ENSJJAG00000018620) #20	Wdhd1 (ENSJJAG00000001164) #21	Socs4 (ENSJJAG00000000581) #22	ENSJJAG00000017492 #23	Lgals3 (ENSJJAG00000011463) #24	ENSJJAG00000018716	Fbxo34 (ENSJJAG00000003125) #26	Atg14 (ENSJJAG00000000490) #27	Tbpl2 (ENSJJAG00000003838)	Ktn1 (ENSJJAG00000013869) #28	Peli2 (ENSJJAG00000003968) #29	Tmem260 (ENSJJAG00000012902) #30	Otx2 (ENSJJAG00000012995) #31	Exoc5 (ENSJJAG00000024175) #32	Ap5m1 (ENSJJAG00000011637) #33	Naa30 (ENSJJAG00000024025) #34	ccdc198 (ENSJJAG00000008303) #35	Slc35f4 (ENSJJAG00000001648) #36
Kangaroo rat	MODERN SPECIES	335	Ero1a (ENSDORG00000016406)	Psmc6 (ENSDORG00000016408)	ENSDORG00000027851 #7	ENSDORG00000025812 #8	Fermt2 (ENSDORG00000000195) #9	Ddhd1 (ENSDORG00000010619) #11	Bmp4 (ENSDORG00000010496) #12	ENSDORG00000027165	Cdkn3 (ENSDORG00000001490) #13	Cnih1 (ENSDORG00000026996) #14	Gmfb (ENSDORG00000008658) #15	Cgrrf1 (ENSDORG00000008660) #16	Samd4 (ENSDORG00000009363) #18	Gch1 (ENSDORG00000007760) #20	Wdhd1 (ENSDORG00000028674) #21	Socs4 (ENSDORG00000001293) #22	ENSDORG00000027672 #23	ENSDORG00000028754	ENSDORG00000027913	Fbxo34 (ENSDORG00000027170) #26	Atg14 (ENSDORG00000029414) #27	Tbpl2 (ENSDORG00000003307)	Ktn1 (ENSDORG00000013437) #28	Peli2 (ENSDORG00000025308) #29	Tmem260 (ENSDORG00000002945) #30	ENSDORG00000028570 #31	Exoc5 (ENSDORG00000009057) #32	Ap5m1 (ENSDORG00000009064) #33	Naa30 (ENSDORG00000007889) #34	ccdc198 (ENSDORG00000007890) #35	Slc35f4 (ENSDORG00000007892) #36
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Hystricomorpha	ANCESTRAL SPECIES	15	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859.p.a.a #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT01010000222666	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00550000074781	ENSGT00940000160291	ENSGT00390000008240.n	ENSGT00390000008240.m	ENSGT00940000161792	ENSGT00940000159452	ENSGT00390000016025.b.h	ENSGT00390000011613	ENSGT00940000160700	ENSGT00390000009277
Hystricomorpha_a	ANCESTRAL SPECIES	18	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859.p.b #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00550000074781	ENSGT00940000160291	ENSGT00390000008240.n	ENSGT00390000008240.m	ENSGT00940000161792	ENSGT00940000159452	ENSGT00390000016025.b.h	ENSGT00390000011613	ENSGT00940000160700	ENSGT00390000009277
Hystricomorpha_b	ANCESTRAL SPECIES	18	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859.p.b #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00550000074781	ENSGT00940000160291	ENSGT00390000008240.n	ENSGT00390000008240.m	ENSGT00940000161792	ENSGT00940000159452	ENSGT00390000016025.b.h	ENSGT00390000011613	ENSGT00940000160700	ENSGT00390000009277
Long-tailed chinchilla	MODERN SPECIES	116	ERO1A (ENSCLAG00000007882)	ENSCLAG00000013485	STYX (ENSCLAG00000009165) #7	GNPNAT1 (ENSCLAG00000008884) #8	FERMT2 (ENSCLAG00000011575) #9	DDHD1 (ENSCLAG00000010961) #11	BMP4 (ENSCLAG00000013951) #12	ENSCLAG00000013671	CDKN3 (ENSCLAG00000010289) #13	CNIH1 (ENSCLAG00000009910) #14	GMFB (ENSCLAG00000008403) #15	CGRRF1 (ENSCLAG00000013882) #16	SAMD4A (ENSCLAG00000011505) #18	GCH1 (ENSCLAG00000009462) #20	ENSCLAG00000013863 #21	SOCS4 (ENSCLAG00000010226) #22	MAPK1IP1L (ENSCLAG00000009943) #23	LGALS3 (ENSCLAG00000009650) #24	DLGAP5 (ENSCLAG00000008776) #25	TRIM69 (ENSCLAG00000013033)	TERB2 (ENSCLAG00000012436)	SORD (ENSCLAG00000009127)	DUOX2 (ENSCLAG00000009210)	DUOXA2 (ENSCLAG00000009352)	DUOXA1 (ENSCLAG00000007621)	DUOX1 (ENSCLAG00000011832)	SHF (ENSCLAG00000009719)	SLC28A2 (ENSCLAG00000011544)	GATM (ENSCLAG00000012238)	ENSCLAG00000008984	C15orf48 (ENSCLAG00000010562)
Degu	MODERN SPECIES	143	ERO1A (ENSODEG00000010226)	ENSODEG00000010581	ENSODEG00000012558 #7	ENSODEG00000011278 #8	FERMT2 (ENSODEG00000010873) #9	DDHD1 (ENSODEG00000012818) #11	ENSODEG00000011864	BMP4 (ENSODEG00000011213) #12	CDKN3 (ENSODEG00000011323) #13	ENSODEG00000011647 #14	ENSODEG00000011880 #15	CGRRF1 (ENSODEG00000012045) #16	SAMD4A (ENSODEG00000011403) #18	GCH1 (ENSODEG00000011446) #20	ENSODEG00000014909 #21	SOCS4 (ENSODEG00000019945) #22	MAPK1IP1L (ENSODEG00000010738) #23
Guinea pig	MODERN SPECIES	23	GPR137C (ENSCPOG00000007435)	ERO1A (ENSCPOG00000007439)	PSMC6 (ENSCPOG00000009477)	STYX (ENSCPOG00000035253) #7	GNPNAT1 (ENSCPOG00000039080) #8	FERMT2 (ENSCPOG00000009476) #9	DDHD1 (ENSCPOG00000012886) #11	BMP4 (ENSCPOG00000006882) #12	CDKN3 (ENSCPOG00000004203) #13	ENSCPOG00000030641 #14	GMFB (ENSCPOG00000035015) #15	CGRRF1 (ENSCPOG00000036459) #16	SAMD4A (ENSCPOG00000014637) #18	GCH1 (ENSCPOG00000003585) #20	WDHD1 (ENSCPOG00000003440) #21	SOCS4 (ENSCPOG00000003449) #22	MAPK1IP1L (ENSCPOG00000003450) #23	LGALS3 (ENSCPOG00000038163) #24	DLGAP5 (ENSCPOG00000004807) #25	TRIM69 (ENSCPOG00000025547)	TERB2 (ENSCPOG00000009515)	SORD (ENSCPOG00000002241)	DUOX2 (ENSCPOG00000007267)	DUOXA2 (ENSCPOG00000005034)	ENSCPOG00000030849	DUOX1 (ENSCPOG00000007302)	SHF (ENSCPOG00000027041)	SLC28A2 (ENSCPOG00000005300)	GATM (ENSCPOG00000007904)	SPATA5L1 (ENSCPOG00000008384)	C15orf48 (ENSCPOG00000033924)
Naked mole-rat female	MODERN SPECIES	11	FERMT2 (ENSHGLG00000018139) #9	DDHD1 (ENSHGLG00000019227) #11	ENSHGLG00000050992	ENSHGLG00000011189	ENSHGLG00000033872	BMP4 (ENSHGLG00000010274) #12	CDKN3 (ENSHGLG00000014824) #13	ENSHGLG00000014302 #14	GMFB (ENSHGLG00000038303) #15	ENSHGLG00000045893	CGRRF1 (ENSHGLG00000032731) #16	SAMD4A (ENSHGLG00000016968) #18	GCH1 (ENSHGLG00000040496) #20	ENSHGLG00000017026	WDHD1 (ENSHGLG00000015105) #21	SOCS4 (ENSHGLG00000041390) #22	MAPK1IP1L (ENSHGLG00000017663) #23	LGALS3 (ENSHGLG00000019099) #24	ENSHGLG00000014601 #25	ENSHGLG00000036163	ENSHGLG00000046252	ENSHGLG00000044277	ENSHGLG00000014203	SORD (ENSHGLG00000039417)	ENSHGLG00000050443	ENSHGLG00000041547	DUOX2 (ENSHGLG00000010033)	DUOXA2 (ENSHGLG00000019350)	ENSHGLG00000013326	DUOX1 (ENSHGLG00000014552)	ENSHGLG00000012788
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT01010000222666	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT01010000230324	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34
Marmotini	ANCESTRAL SPECIES	15	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065.c #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00390000006178.gb	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT01010000230324	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34
Marmotini_b	ANCESTRAL SPECIES	14	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065.c #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a.o #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00390000006178.gb	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191.e #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Arctic ground squirrel	MODERN SPECIES	27	CCDC179 (ENSUPAG00010003796)	ENSUPAG00010003788	LUZP2 (ENSUPAG00010003729)	MUC15 (ENSUPAG00010003693)	ANO3 (ENSUPAG00010003647)	SLC5A12 (ENSUPAG00010003595)	FIBIN (ENSUPAG00010003590)	BMP4 (ENSUPAG00010003585) #12	CDKN3 (ENSUPAG00010003565) #13	CNIH1 (ENSUPAG00010003545) #14	GMFB (ENSUPAG00010003533) #15	CGRRF1 (ENSUPAG00010003511) #16	SAMD4A (ENSUPAG00010003229) #18	GCH1 (ENSUPAG00010003221) #20	WDHD1 (ENSUPAG00010003149) #21	SOCS4 (ENSUPAG00010003145) #22	MAPK1IP1L (ENSUPAG00010003130) #23	LGALS3 (ENSUPAG00010003112) #24	ENSUPAG00010003095	FBXO34 (ENSUPAG00010003083) #26	ATG14 (ENSUPAG00010003072) #27	TBPL2 (ENSUPAG00010003064)	ENSUPAG00010003052	KTN1 (ENSUPAG00010001418) #28	ENSUPAG00010001410	PELI2 (ENSUPAG00010001379) #29	TMEM260 (ENSUPAG00010001276) #30	OTX2 (ENSUPAG00010001231) #31	EXOC5 (ENSUPAG00010001129) #32	AP5M1 (ENSUPAG00010001100) #33	NAA30 (ENSUPAG00010001083) #34
Squirrel	MODERN SPECIES	297	GPR137C (ENSSTOG00000012261)	ERO1A (ENSSTOG00000012268)	Psmc6 (ENSSTOG00000014494)	STYX (ENSSTOG00000014504) #7	GNPNAT1 (ENSSTOG00000014513) #8	FERMT2 (ENSSTOG00000008563) #9	DDHD1 (ENSSTOG00000000406) #11	BMP4 (ENSSTOG00000001152) #12	CDKN3 (ENSSTOG00000011339) #13	CNIH1 (ENSSTOG00000011352) #14	GMFB (ENSSTOG00000011357) #15	CGRRF1 (ENSSTOG00000023600) #16	SAMD4A (ENSSTOG00000015276) #18	ENSSTOG00000020010 #20	WDHD1 (ENSSTOG00000020300) #21	SOCS4 (ENSSTOG00000004262) #22	MAPK1IP1L (ENSSTOG00000004388) #23	LGALS3 (ENSSTOG00000026024) #24
Alpin marmot	MODERN SPECIES	7	GPR137C (ENSMMMG00000001720)	ERO1A (ENSMMMG00000001747)	PSMC6 (ENSMMMG00000001802)	STYX (ENSMMMG00000001812) #7	GNPNAT1 (ENSMMMG00000001835) #8	FERMT2 (ENSMMMG00000001867) #9	ENSMMMG00000001924 #11	BMP4 (ENSMMMG00000002321) #12	CDKN3 (ENSMMMG00000002335) #13	CNIH1 (ENSMMMG00000002362) #14	GMFB (ENSMMMG00000002388) #15	CGRRF1 (ENSMMMG00000002415) #16	SAMD4A (ENSMMMG00000002450) #18	GCH1 (ENSMMMG00000002659) #20	WDHD1 (ENSMMMG00000002686) #21	SOCS4 (ENSMMMG00000002820) #22	MAPK1IP1L (ENSMMMG00000002821) #23	LGALS3 (ENSMMMG00000002842) #24	ENSMMMG00000002883	FBXO34 (ENSMMMG00000002895) #26	ATG14 (ENSMMMG00000002906) #27	TBPL2 (ENSMMMG00000002943)	ENSMMMG00000002960	KTN1 (ENSMMMG00000003061) #28	ENSMMMG00000005015	PELI2 (ENSMMMG00000005044) #29	TMEM260 (ENSMMMG00000005095) #30	ENSMMMG00000005191	OTX2 (ENSMMMG00000005205) #31	ENSMMMG00000005219	EXOC5 (ENSMMMG00000005231) #32
Eurasian red squirrel	MODERN SPECIES	11	GNPNAT1 (ENSSVLG00005006714) #8	ENSSVLG00005006693	FERMT2 (ENSSVLG00005006620) #9	ENSSVLG00005006589	DDHD1 (ENSSVLG00005006359) #11	ENSSVLG00005006333 #12	ENSSVLG00005006320	CDKN3 (ENSSVLG00005006189) #13	CNIH1 (ENSSVLG00005006051) #14	ENSSVLG00005005962 #15	ENSSVLG00005005906 #16	SAMD4A (ENSSVLG00005005855) #18	ENSSVLG00005005811	ENSSVLG00005004501 #20	WDHD1 (ENSSVLG00005004416) #21	SOCS4 (ENSSVLG00005004401) #22	ENSSVLG00005004383 #23	LGALS3 (ENSSVLG00005004351) #24	ENSSVLG00005004332	DLGAP5 (ENSSVLG00005004281) #25	FBXO34 (ENSSVLG00005004246) #26	ATG14 (ENSSVLG00005004233) #27	KTN1 (ENSSVLG00005003695) #28	PELI2 (ENSSVLG00005003386) #29	TMEM260 (ENSSVLG00005003323) #30	ENSSVLG00005003294 #31	ENSSVLG00005003276	EXOC5 (ENSSVLG00005003254) #32	AP5M1 (ENSSVLG00005003216) #33	NAA30 (ENSSVLG00005003191) #34	CCDC198 (ENSSVLG00005003166) #35
Lagomorpha	ANCESTRAL SPECIES	14	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065.f #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Rabbit	MODERN SPECIES	8	PSMC6 (ENSOCUG00000012638)	STYX (ENSOCUG00000029442) #7	ENSOCUG00000007858 #8	FERMT2 (ENSOCUG00000001043) #9	DDHD1 (ENSOCUG00000000326) #11	ENSOCUG00000021983	BMP4 (ENSOCUG00000011097) #12	ENSOCUG00000037068	CDKN3 (ENSOCUG00000003047) #13	CNIH1 (ENSOCUG00000039011) #14	GMFB (ENSOCUG00000004488) #15	CGRRF1 (ENSOCUG00000001097) #16	SAMD4A (ENSOCUG00000003420) #18	ENSOCUG00000003060 #20	WDHD1 (ENSOCUG00000004987) #21	SOCS4 (ENSOCUG00000004006) #22	MAPK1IP1L (ENSOCUG00000004003) #23	LGALS3 (ENSOCUG00000002924) #24	DLGAP5 (ENSOCUG00000002926) #25	FBXO34 (ENSOCUG00000010779) #26	ATG14 (ENSOCUG00000014723) #27	TBPL2 (ENSOCUG00000014738)	KTN1 (ENSOCUG00000010650) #28	PELI2 (ENSOCUG00000002611) #29	ENSOCUG00000016399	TMEM260 (ENSOCUG00000002619) #30	OTX2 (ENSOCUG00000002633) #31	ENSOCUG00000000756 #32	AP5M1 (ENSOCUG00000009782) #33	NAA30 (ENSOCUG00000008997) #34	CCDC198 (ENSOCUG00000015402) #35
Pika	MODERN SPECIES	8809																SOCS4 (ENSOPRG00000003123) #22
Primates	ANCESTRAL SPECIES	2	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666.d #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666.d #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A.cb.a	ENSGT00940000154859 #7	ENSGT00390000008666.d #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Catarrhini	ANCESTRAL SPECIES	9	ENSGT01020000230346.A.cb.a	ENSGT00940000154859 #7	ENSGT00390000008666.d #8	ENSGT00390000013444.a.a #9	ENSGT00390000010316.j.b	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000006837.e.b	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.q.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00390000001424.pb.a	ENSGT00940000154663.v	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00390000010799.u.b.a.a.b.o.b	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000017606.a.a.i.b.a.a.f.b
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00940000154859 #7	ENSGT00390000008666.d #8	ENSGT00980000198875	ENSGT00390000013444.a.a #9	ENSGT00390000010316.j.b	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000006837.e.b	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.q.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00390000001424.pb.a	ENSGT00940000154663.v	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00390000010799.u.b.a.a.b.o.b	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000017606.a.a.i.b.a.a.f.b
Hominidae	ANCESTRAL SPECIES	14	ENSGT00940000154859 #7	ENSGT00390000008666.d #8	ENSGT00980000198875	ENSGT00390000013444.a.a #9	ENSGT00390000010316.j.b	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000006837.e.b	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.q.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00390000001424.pb.a	ENSGT00940000154663.v	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000017606.a.a.i.b.a.a.f.b	ENSGT00390000004745
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00940000154859 #7	ENSGT00390000008666.d #8	ENSGT00980000198875	ENSGT00390000013444.a.a #9	ENSGT00390000010316.j.b	ENSGT00940000156065 #11	ENSGT00940000159502.l #12	ENSGT00390000006837.e.b	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.q.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00390000001424.pb.a	ENSGT00940000154663.v	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000017606.a.a.i.b.a.a.f.b	ENSGT00390000004745
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00940000154859 #7	ENSGT00390000008666.d #8	ENSGT00980000198875	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502.k #12	ENSGT00390000006837.e.b	ENSGT00940000159502.l #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.q.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000017606.a.a.i.b.a.a.f.b	ENSGT00390000004745	ENSGT00390000012837.e #32	ENSGT00390000006191 #33
Pan	ANCESTRAL SPECIES	8	ENSGT00940000154859 #7	ENSGT00390000008666.d #8	ENSGT00980000198875	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502.l #12	ENSGT00940000159502.k #12	ENSGT00390000006837.e.b	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.q.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00390000001424.pb.a	ENSGT00940000154663.v	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000017606.a.a.i.b.a.a.f.b	ENSGT00390000004745
Bonobo	MODERN SPECIES	5	PSMC6 (ENSPPAG00000033737)	STYX (ENSPPAG00000033887) #7	GNPNAT1 (ENSPPAG00000029428) #8	ENSPPAG00000035237	FERMT2 (ENSPPAG00000033894) #9	DDHD1 (ENSPPAG00000010785) #11	ENSPPAG00000028714 #12	ENSPPAG00000041855	CDKN3 (ENSPPAG00000041424) #13	CNIH1 (ENSPPAG00000031271) #14	GMFB (ENSPPAG00000003701) #15	CGRRF1 (ENSPPAG00000037026) #16	SAMD4A (ENSPPAG00000040127) #18	GCH1 (ENSPPAG00000040536) #20	WDHD1 (ENSPPAG00000035486) #21	SOCS4 (ENSPPAG00000009240) #22	MAPK1IP1L (ENSPPAG00000027639) #23	LGALS3 (ENSPPAG00000033425) #24	DLGAP5 (ENSPPAG00000027413) #25	ENSPPAG00000041255	ENSPPAG00000028784	ENSPPAG00000032231	FBXO34 (ENSPPAG00000025212) #26	ATG14 (ENSPPAG00000031641) #27	TBPL2 (ENSPPAG00000032927)	KTN1 (ENSPPAG00000028706) #28	PELI2 (ENSPPAG00000040323) #29	ENSPPAG00000043810	TMEM260 (ENSPPAG00000035414) #30	OTX2 (ENSPPAG00000041036) #31	ENSPPAG00000016433
Chimpanzee	MODERN SPECIES	5	PSMC6 (ENSPTRG00000006352)	STYX (ENSPTRG00000023938) #7	GNPNAT1 (ENSPTRG00000006354) #8	ENSPTRG00000043111	FERMT2 (ENSPTRG00000006355) #9	DDHD1 (ENSPTRG00000006357) #11	BMP4 (ENSPTRG00000006358) #12	ENSPTRG00000047994	CDKN3 (ENSPTRG00000006360) #13	CNIH1 (ENSPTRG00000006361) #14	GMFB (ENSPTRG00000023658) #15	CGRRF1 (ENSPTRG00000006363) #16	SAMD4A (ENSPTRG00000006364) #18	GCH1 (ENSPTRG00000006365) #20	WDHD1 (ENSPTRG00000006366) #21	SOCS4 (ENSPTRG00000043978) #22	MAPK1IP1L (ENSPTRG00000044583) #23	LGALS3 (ENSPTRG00000006370) #24	DLGAP5 (ENSPTRG00000006371) #25	ENSPTRG00000005754	ENSPTRG00000048659	ENSPTRG00000050637	FBXO34 (ENSPTRG00000006373) #26	ATG14 (ENSPTRG00000006375) #27	TBPL2 (ENSPTRG00000006376)	KTN1 (ENSPTRG00000006378) #28	PELI2 (ENSPTRG00000049032) #29	ENSPTRG00000046110	TMEM260 (ENSPTRG00000006380) #30	OTX2 (ENSPTRG00000006381) #31	EXOC5 (ENSPTRG00000023297) #32
Human	MODERN SPECIES	5	GPR137C (ENSG00000180998)	ERO1A (ENSG00000197930)	PSMC6 (ENSG00000100519)	STYX (ENSG00000198252) #7	GNPNAT1 (ENSG00000100522) #8	FERMT2 (ENSG00000073712) #9	DDHD1 (ENSG00000100523) #11	BMP4 (ENSG00000125378) #12	CDKN3 (ENSG00000100526) #13	CNIH1 (ENSG00000100528) #14	GMFB (ENSG00000197045) #15	CGRRF1 (ENSG00000100532) #16	SAMD4A (ENSG00000020577) #18	GCH1 (ENSG00000131979) #20	WDHD1 (ENSG00000198554) #21	SOCS4 (ENSG00000180008) #22	MAPK1IP1L (ENSG00000168175) #23	LGALS3 (ENSG00000131981) #24	DLGAP5 (ENSG00000126787) #25	FBXO34 (ENSG00000178974) #26	ATG14 (ENSG00000126775) #27	TBPL2 (ENSG00000182521)	KTN1 (ENSG00000126777) #28	PELI2 (ENSG00000139946) #29	TMEM260 (ENSG00000070269) #30	OTX2 (ENSG00000165588) #31	EXOC5 (ENSG00000070367) #32	AP5M1 (ENSG00000053770) #33	NAA30 (ENSG00000139977) #34	CCDC198 (ENSG00000100557) #35	SLC35F4 (ENSG00000151812) #36
Gorilla	MODERN SPECIES	5	GNPNAT1 (ENSGGOG00000025060) #8	ENSGGOG00000038932	FERMT2 (ENSGGOG00000013875) #9	ENSGGOG00000027206	DDHD1 (ENSGGOG00000012099) #11	BMP4 (ENSGGOG00000014927) #12	BMP4 (ENSGGOG00000026060) #12	ENSGGOG00000040693	CDKN3 (ENSGGOG00000005725) #13	CNIH1 (ENSGGOG00000013282) #14	GMFB (ENSGGOG00000025228) #15	CGRRF1 (ENSGGOG00000000676) #16	SAMD4A (ENSGGOG00000000673) #18	ENSGGOG00000011080 #20	WDHD1 (ENSGGOG00000007744) #21	SOCS4 (ENSGGOG00000042890) #22	MAPK1IP1L (ENSGGOG00000041654) #23	LGALS3 (ENSGGOG00000003457) #24	DLGAP5 (ENSGGOG00000003460) #25	ENSGGOG00000003194	ENSGGOG00000023316	FBXO34 (ENSGGOG00000006852) #26	ATG14 (ENSGGOG00000041100) #27	TBPL2 (ENSGGOG00000001055)	KTN1 (ENSGGOG00000016707) #28	PELI2 (ENSGGOG00000044000) #29	ENSGGOG00000040841	TMEM260 (ENSGGOG00000015629) #30	OTX2 (ENSGGOG00000004038) #31	ENSGGOG00000025246	ENSGGOG00000023022 #32
Orangutan	MODERN SPECIES	5	ERO1A (ENSPPYG00000005819)	PSMC6 (ENSPPYG00000005820)	STYX (ENSPPYG00000005821) #7	GNPNAT1 (ENSPPYG00000005822) #8	ENSPPYG00000040946	FERMT2 (ENSPPYG00000005823) #9	DDHD1 (ENSPPYG00000005825) #11	BMP4 (ENSPPYG00000005826) #12	CDKN3 (ENSPPYG00000005827) #13	CNIH1 (ENSPPYG00000005829) #14	GMFB (ENSPPYG00000005830) #15	CGRRF1 (ENSPPYG00000005831) #16	SAMD4A (ENSPPYG00000005832) #18	GCH1 (ENSPPYG00000005833) #20	WDHD1 (ENSPPYG00000005834) #21	SOCS4 (ENSPPYG00000037748) #22	MAPK1IP1L (ENSPPYG00000039502) #23	LGALS3 (ENSPPYG00000005837) #24	DLGAP5 (ENSPPYG00000005838) #25	ENSPPYG00000030301	FBXO34 (ENSPPYG00000029688) #26	ENSPPYG00000041712	ATG14 (ENSPPYG00000005839) #27	TBPL2 (ENSPPYG00000005840)	KTN1 (ENSPPYG00000005842) #28	PELI2 (ENSPPYG00000038761) #29	ENSPPYG00000005844	TMEM260 (ENSPPYG00000040522) #30	OTX2 (ENSPPYG00000005846) #31	ENSPPYG00000005847	EXOC5 (ENSPPYG00000005848) #32
Gibbon	MODERN SPECIES	10	STYX (ENSNLEG00000032693) #7	GNPNAT1 (ENSNLEG00000032052) #8	ENSNLEG00000032488	FERMT2 (ENSNLEG00000012599) #9	ENSNLEG00000034392	DDHD1 (ENSNLEG00000012635) #11	BMP4 (ENSNLEG00000012666) #12	ENSNLEG00000036135	CDKN3 (ENSNLEG00000012673) #13	ENSNLEG00000032036 #14	GMFB (ENSNLEG00000012717) #15	CGRRF1 (ENSNLEG00000012724) #16	ENSNLEG00000012735 #18	GCH1 (ENSNLEG00000012744) #20	WDHD1 (ENSNLEG00000012760) #21	SOCS4 (ENSNLEG00000012784) #22	MAPK1IP1L (ENSNLEG00000027489) #23	LGALS3 (ENSNLEG00000012791) #24	DLGAP5 (ENSNLEG00000012807) #25	FBXO34 (ENSNLEG00000012813) #26	ATG14 (ENSNLEG00000012814) #27	TBPL2 (ENSNLEG00000012821)	KTN1 (ENSNLEG00000012831) #28	ENSNLEG00000007819	PELI2 (ENSNLEG00000012961) #29	TMEM260 (ENSNLEG00000012964) #30	OTX2 (ENSNLEG00000012999) #31	ENSNLEG00000036263	ENSNLEG00000031520	EXOC5 (ENSNLEG00000013004) #32	AP5M1 (ENSNLEG00000013007) #33
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00940000154859 #7	ENSGT00390000008666.d.a #8	ENSGT00390000015224.c.b.a	ENSGT00390000013444.a.a #9	ENSGT00390000010316.j.b	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000006837.e.b	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.q.a #15	ENSGT00390000004542.i.a #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.a.a #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00390000001424.pb.a	ENSGT00940000154663.v	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00390000010799.u.b.a.a.b.o.b	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000017606.a.a.i.b.a.a.f.b
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00940000154859 #7	ENSGT00390000008666.d.a #8	ENSGT00390000015224.c.b.a	ENSGT00390000013444.a.a #9	ENSGT00390000010316.j.b	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000006837.e.b	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.q.a #15	ENSGT00390000004542.i.a #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.a.a #23	ENSGT00950000182857.a.a.b.a.r.a.b.b.a.a.d	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00390000001424.pb.a	ENSGT00940000154663.v	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00390000010799.u.b.a.a.b.o.b	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00940000154859 #7	ENSGT00390000008666.d.a #8	ENSGT00390000015224.c.b.a	ENSGT00390000013444.a.a #9	ENSGT00390000010316.j.b	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000006837.e.b	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.q.a #15	ENSGT00390000004542.i.a #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.a.a #23	ENSGT00950000182857.a.a.b.a.r.a.b.b.a.a.d	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00390000001424.pb.a	ENSGT00940000154663.v	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00390000010799.u.b.a.a.b.o.b.b	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31
Macaca	ANCESTRAL SPECIES	1	ENSGT00390000007753.b	ENSGT01020000230346.A.db	ENSGT00940000154859 #7	ENSGT00390000008666.d.a #8	ENSGT00390000013444.a.a #9	ENSGT00390000010316.j.b	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.q.a #15	ENSGT00390000004542.i.a #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.a.a #23	ENSGT00950000182857.a.a.b.a.r.a.b.b.a.a.d	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000001424.pb.a	ENSGT00940000154663.v	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33
Pig-tailed macaque	MODERN SPECIES	577	ENSMNEG00000041519	STYX (ENSMNEG00000036478) #7	GNPNAT1 (ENSMNEG00000033203) #8	ENSMNEG00000028283	FERMT2 (ENSMNEG00000034205) #9	ENSMNEG00000039526	DDHD1 (ENSMNEG00000044969) #11	BMP4 (ENSMNEG00000036486) #12	CDKN3 (ENSMNEG00000038387) #13	CNIH1 (ENSMNEG00000029739) #14	GMFB (ENSMNEG00000041895) #15	ENSMNEG00000040434 #16	SAMD4A (ENSMNEG00000031957) #18	GCH1 (ENSMNEG00000040919) #20	WDHD1 (ENSMNEG00000032489) #21	SOCS4 (ENSMNEG00000018307) #22	MAPK1IP1L (ENSMNEG00000038169) #23	ENSMNEG00000024671	LGALS3 (ENSMNEG00000044514) #24	DLGAP5 (ENSMNEG00000043865) #25
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A.cb.a.d	ENSGT00940000154859 #7	ENSGT00390000008666.d.a #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.q.a #15	ENSGT00390000004542.i.a #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.a.a #23	ENSGT00950000182857.a.a.b.a.r.a.b.b.a.a.d	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00940000154663.v	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34
Crab-eating macaque	MODERN SPECIES	17	ERO1A (ENSMFAG00000000867)	PSMC6 (ENSMFAG00000036774)	STYX (ENSMFAG00000038341) #7	GNPNAT1 (ENSMFAG00000062287) #8	FERMT2 (ENSMFAG00000038626) #9	DDHD1 (ENSMFAG00000036353) #11	BMP4 (ENSMFAG00000040789) #12	ENSMFAG00000054009	CDKN3 (ENSMFAG00000045970) #13	GMFB (ENSMFAG00000036199) #15	CNIH1 (ENSMFAG00000042370) #14	CGRRF1 (ENSMFAG00000043781) #16	SAMD4A (ENSMFAG00000041636) #18	GCH1 (ENSMFAG00000000353) #20	WDHD1 (ENSMFAG00000032915) #21	SOCS4 (ENSMFAG00000056239) #22	MAPK1IP1L (ENSMFAG00000044107) #23	ENSMFAG00000028816	LGALS3 (ENSMFAG00000055901) #24	DLGAP5 (ENSMFAG00000035988) #25	FBXO34 (ENSMFAG00000009535) #26	ENSMFAG00000031625	ENSMFAG00000050746	ENSMFAG00000058470	ATG14 (ENSMFAG00000045831) #27	TBPL2 (ENSMFAG00000031288)	KTN1 (ENSMFAG00000043226) #28	PELI2 (ENSMFAG00000040947) #29	TMEM260 (ENSMFAG00000040523) #30	OTX2 (ENSMFAG00000033859) #31	ENSMFAG00000060450
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00940000154859 #7	ENSGT00390000008666.d.a #8	ENSGT00390000015224.c.b.a	ENSGT00390000013444.a.a #9	ENSGT00390000010316.j.b	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000006837.e.b	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.q.a #15	ENSGT00390000004542.i.a #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.a.a #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00390000001424.pb.a	ENSGT00940000154663.v	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00390000010799.u.b.a.a.b.o.b.b	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000004745
Olive baboon	MODERN SPECIES	17	ENSPANG00000023304	STYX (ENSPANG00000017508) #7	GNPNAT1 (ENSPANG00000000766) #8	FERMT2 (ENSPANG00000000767) #9	ENSPANG00000037974	DDHD1 (ENSPANG00000017507) #11	BMP4 (ENSPANG00000042374) #12	ENSPANG00000038701	CDKN3 (ENSPANG00000015151) #13	CNIH1 (ENSPANG00000022395) #14	GMFB (ENSPANG00000034040) #15	ENSPANG00000021096 #16	SAMD4A (ENSPANG00000004323) #18	GCH1 (ENSPANG00000015150) #20	WDHD1 (ENSPANG00000017506) #21	SOCS4 (ENSPANG00000018402) #22	MAPK1IP1L (ENSPANG00000018091) #23	LGALS3 (ENSPANG00000004321) #24	DLGAP5 (ENSPANG00000023585) #25	ENSPANG00000023586	FBXO34 (ENSPANG00000014185) #26	ATG14 (ENSPANG00000023985) #27	TBPL2 (ENSPANG00000015296)	ENSPANG00000043240	ENSPANG00000037655	KTN1 (ENSPANG00000015295) #28	PELI2 (ENSPANG00000009936) #29	TMEM260 (ENSPANG00000004318) #30	ENSPANG00000037748	OTX2 (ENSPANG00000045284) #31	ENSPANG00000040753
Cercopithecinae_d	ANCESTRAL SPECIES	28	ENSGT00940000154859 #7	ENSGT00390000008666.d.a #8	ENSGT00390000015224.c.b.a	ENSGT00390000013444.a.a #9	ENSGT00390000010316.j.b	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000006837.e.b	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.q.a #15	ENSGT00390000004542.i.a #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.a.a #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00390000001424.pb.a	ENSGT00940000154663.v	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00390000010799.u.b.a.a.b.o.b.b	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32
Sooty mangabey	MODERN SPECIES	659	STYX (ENSCATG00000012449) #7	GNPNAT1 (ENSCATG00000041819) #8	FERMT2 (ENSCATG00000034280) #9	ENSCATG00000035764	ENSCATG00000000732	DDHD1 (ENSCATG00000043261) #11	BMP4 (ENSCATG00000042313) #12	ENSCATG00000032779	CDKN3 (ENSCATG00000045220) #13	CNIH1 (ENSCATG00000026544) #14	GMFB (ENSCATG00000029526) #15	ENSCATG00000029605 #16	SAMD4A (ENSCATG00000043489) #18	GCH1 (ENSCATG00000014083) #20	WDHD1 (ENSCATG00000035221) #21	SOCS4 (ENSCATG00000022174) #22	ENSCATG00000029186 #23	ENSCATG00000030277	LGALS3 (ENSCATG00000044749) #24	DLGAP5 (ENSCATG00000040010) #25	ENSCATG00000041587	ENSCATG00000038053	FBXO34 (ENSCATG00000016185) #26	ATG14 (ENSCATG00000031799) #27	TBPL2 (ENSCATG00000039794)	KTN1 (ENSCATG00000030333) #28	PELI2 (ENSCATG00000031342) #29	ENSCATG00000004633	TMEM260 (ENSCATG00000045192) #30	ENSCATG00000042898	ENSCATG00000000491
Drill	MODERN SPECIES	1310	STYX (ENSMLEG00000028632) #7	GNPNAT1 (ENSMLEG00000038515) #8	ENSMLEG00000042916	FERMT2 (ENSMLEG00000041706) #9	ENSMLEG00000011424	DDHD1 (ENSMLEG00000042239) #11	BMP4 (ENSMLEG00000043584) #12	ENSMLEG00000043333	CDKN3 (ENSMLEG00000036368) #13	CNIH1 (ENSMLEG00000033502) #14	GMFB (ENSMLEG00000028861) #15	ENSMLEG00000040467 #16	SAMD4A (ENSMLEG00000037282) #18	GCH1 (ENSMLEG00000040763) #20	WDHD1 (ENSMLEG00000035661) #21	SOCS4 (ENSMLEG00000001561) #22	ENSMLEG00000036018 #23	LGALS3 (ENSMLEG00000040161) #24	DLGAP5 (ENSMLEG00000028124) #25	ENSMLEG00000037710	ENSMLEG00000034307	FBXO34 (ENSMLEG00000027651) #26	ATG14 (ENSMLEG00000030693) #27	TBPL2 (ENSMLEG00000032077)	KTN1 (ENSMLEG00000035190) #28	ENSMLEG00000039321	PELI2 (ENSMLEG00000029689) #29	ENSMLEG00000022777
Vervet Monkey	MODERN SPECIES	16	ERO1A (ENSCSAG00000015035)	PSMC6 (ENSCSAG00000015023)	STYX (ENSCSAG00000014983) #7	GNPNAT1 (ENSCSAG00000014976) #8	FERMT2 (ENSCSAG00000014974) #9	DDHD1 (ENSCSAG00000014938) #11	ENSCSAG00000014856	BMP4 (ENSCSAG00000014842) #12	CDKN3 (ENSCSAG00000014837) #13	CNIH1 (ENSCSAG00000014832) #14	GMFB (ENSCSAG00000014825) #15	ENSCSAG00000014820 #16	SAMD4A (ENSCSAG00000014813) #18	GCH1 (ENSCSAG00000014802) #20	WDHD1 (ENSCSAG00000014757) #21	SOCS4 (ENSCSAG00000019409) #22	MAPK1IP1L (ENSCSAG00000014664) #23	ENSCSAG00000019410	LGALS3 (ENSCSAG00000014660) #24	DLGAP5 (ENSCSAG00000014651) #25	FBXO34 (ENSCSAG00000019411) #26	ATG14 (ENSCSAG00000014639) #27	TBPL2 (ENSCSAG00000014616)	KTN1 (ENSCSAG00000014591) #28	PELI2 (ENSCSAG00000014565) #29	TMEM260 (ENSCSAG00000014554) #30	OTX2 (ENSCSAG00000014537) #31	EXOC5 (ENSCSAG00000014529) #32	AP5M1 (ENSCSAG00000014515) #33	NAA30 (ENSCSAG00000014509) #34	CCDC198 (ENSCSAG00000014503) #35
Rhinopithecus	ANCESTRAL SPECIES	78	ENSGT01020000230346.A.cb.a	ENSGT00940000154859 #7	ENSGT00390000008666.d.a #8	ENSGT00390000015224.c.b.a	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000006837.e.b	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.q.a #15	ENSGT00390000004542.i.a #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.a.a #23	ENSGT00940000157224.r #24	ENSGT00940000158652 #25	ENSGT00390000001424.pb.a	ENSGT00940000154663.v	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28
Golden snub-nosed monkey	MODERN SPECIES	1639	PSMC6 (ENSRROG00000032555)	STYX (ENSRROG00000035593) #7	GNPNAT1 (ENSRROG00000028958) #8	ENSRROG00000029408	FERMT2 (ENSRROG00000030240) #9	DDHD1 (ENSRROG00000035820) #11	BMP4 (ENSRROG00000041903) #12	ENSRROG00000039104	CDKN3 (ENSRROG00000034662) #13	CNIH1 (ENSRROG00000044418) #14	GMFB (ENSRROG00000030418) #15	ENSRROG00000028966 #16	SAMD4A (ENSRROG00000038834) #18	GCH1 (ENSRROG00000044548) #20	WDHD1 (ENSRROG00000006993) #21	SOCS4 (ENSRROG00000015397) #22	ENSRROG00000039841 #23	ENSRROG00000041661 #24	DLGAP5 (ENSRROG00000036225) #25	ENSRROG00000028369	ENSRROG00000035095	ENSRROG00000032155	FBXO34 (ENSRROG00000007681) #26	ATG14 (ENSRROG00000033562) #27	TBPL2 (ENSRROG00000039944)	KTN1 (ENSRROG00000045278) #28	ENSRROG00000038972
Black snub-nosed monkey	MODERN SPECIES	458	TBC1D9 (ENSRBIG00000041207)	ENSRBIG00000035989	UCP1 (ENSRBIG00000042098)	ENSRBIG00000008819	MGAT4D (ENSRBIG00000044984)	CLGN (ENSRBIG00000036319)	SCOC (ENSRBIG00000032344)	ENSRBIG00000029802	MAML3 (ENSRBIG00000031955)	MGST2 (ENSRBIG00000030111)	ENSRBIG00000036487	ENSRBIG00000036345 #16	SAMD4A (ENSRBIG00000043506) #18	GCH1 (ENSRBIG00000030302) #20	WDHD1 (ENSRBIG00000036687) #21	SOCS4 (ENSRBIG00000020372) #22	MAPK1IP1L (ENSRBIG00000024081) #23	ENSRBIG00000004712	ENSRBIG00000041453 #24	DLGAP5 (ENSRBIG00000036589) #25	ENSRBIG00000013868	ENSRBIG00000032278	FBXO34 (ENSRBIG00000030413) #26	ATG14 (ENSRBIG00000034331) #27	TBPL2 (ENSRBIG00000043431)	KTN1 (ENSRBIG00000044537) #28	ENSRBIG00000037055
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A.cb.a	ENSGT00940000154859 #7	ENSGT00390000008666.d #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Cebidae	ANCESTRAL SPECIES	3	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A.cb.a	ENSGT00940000154859 #7	ENSGT00390000008666.d #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Cebidae_a	ANCESTRAL SPECIES	31	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A.cb.a	ENSGT00940000154859 #7	ENSGT00390000008666.d #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Capuchin	MODERN SPECIES	558															WDHD1 (ENSCCAG00000018389) #21	SOCS4 (ENSCCAG00000031879) #22	MAPK1IP1L (ENSCCAG00000030913) #23	LGALS3 (ENSCCAG00000034472) #24	DLGAP5 (ENSCCAG00000020481) #25	ENSCCAG00000024126	ATG14 (ENSCCAG00000028579) #27	TBPL2 (ENSCCAG00000023796)	KTN1 (ENSCCAG00000028152) #28
Bolivian squirrel monkey	MODERN SPECIES	80	GPR137C (ENSSBOG00000024278)	ERO1A (ENSSBOG00000025027)	PSMC6 (ENSSBOG00000022172)	STYX (ENSSBOG00000033294) #7	ENSSBOG00000027966 #8	FERMT2 (ENSSBOG00000022435) #9	ENSSBOG00000022578 #11	BMP4 (ENSSBOG00000018224) #12	CDKN3 (ENSSBOG00000023960) #13	CNIH1 (ENSSBOG00000031293) #14	GMFB (ENSSBOG00000035491) #15	CGRRF1 (ENSSBOG00000025623) #16	SAMD4A (ENSSBOG00000022006) #18	GCH1 (ENSSBOG00000025939) #20	WDHD1 (ENSSBOG00000034847) #21	SOCS4 (ENSSBOG00000017242) #22	MAPK1IP1L (ENSSBOG00000023553) #23	ENSSBOG00000022699	LGALS3 (ENSSBOG00000034412) #24	DLGAP5 (ENSSBOG00000025617) #25	ENSSBOG00000013816	ENSSBOG00000022471	ATG14 (ENSSBOG00000030360) #27	TBPL2 (ENSSBOG00000019809)	ENSSBOG00000015462	KTN1 (ENSSBOG00000015980) #28	ENSSBOG00000027121	PELI2 (ENSSBOG00000021348) #29	TMEM260 (ENSSBOG00000020251) #30	OTX2 (ENSSBOG00000026803) #31	ENSSBOG00000004829
Marmoset	MODERN SPECIES	1	FERMT2 (ENSCJAG00000007170) #9	ENSCJAG00000072490	ENSCJAG00000081277	DDHD1 (ENSCJAG00000007229) #11	BMP4 (ENSCJAG00000054138) #12	DNAJC7 (ENSCJAG00000035699)	CDKN3 (ENSCJAG00000007280) #13	ENSCJAG00000081091	ENSCJAG00000038806 #14	ENSCJAG00000007312 #15	CGRRF1 (ENSCJAG00000007328) #16	SAMD4A (ENSCJAG00000018182) #18	GCH1 (ENSCJAG00000042456) #20	WDHD1 (ENSCJAG00000018208) #21	ENSCJAG00000077756	SOCS4 (ENSCJAG00000018289) #22	ENSCJAG00000085844 #23	LGALS3 (ENSCJAG00000018296) #24	DLGAP5 (ENSCJAG00000018306) #25	ENSCJAG00000076488	ENSCJAG00000086992	ENSCJAG00000085701	ENSCJAG00000080057	ENSCJAG00000071148	FBXO34 (ENSCJAG00000021876) #26	ATG14 (ENSCJAG00000018362) #27	TBPL2 (ENSCJAG00000018372)	ENSCJAG00000085644	KTN1 (ENSCJAG00000018382) #28	PELI2 (ENSCJAG00000057280) #29	ENSCJAG00000080395
Mas night monkey	MODERN SPECIES	273	STYX (ENSANAG00000029545) #7	GNPNAT1 (ENSANAG00000021737) #8	FERMT2 (ENSANAG00000031245) #9	DDHD1 (ENSANAG00000030834) #11	ENSANAG00000028553	ENSANAG00000032151	BMP4 (ENSANAG00000035952) #12	ENSANAG00000037804	CDKN3 (ENSANAG00000025185) #13	CNIH1 (ENSANAG00000035095) #14	GMFB (ENSANAG00000033336) #15	CGRRF1 (ENSANAG00000036449) #16	SAMD4A (ENSANAG00000036651) #18	GCH1 (ENSANAG00000026548) #20	WDHD1 (ENSANAG00000033347) #21	SOCS4 (ENSANAG00000004973) #22	ENSANAG00000037823 #23	LGALS3 (ENSANAG00000020743) #24	DLGAP5 (ENSANAG00000035817) #25	ATG14 (ENSANAG00000024345) #27	TBPL2 (ENSANAG00000023060)	KTN1 (ENSANAG00000031174) #28	PELI2 (ENSANAG00000022899) #29	ENSANAG00000016925	TMEM260 (ENSANAG00000038375) #30	ENSANAG00000030036	OTX2 (ENSANAG00000032626) #31	EXOC5 (ENSANAG00000038073) #32	AP5M1 (ENSANAG00000027663) #33	ENSANAG00000019497	NAA30 (ENSANAG00000025690) #34
Tarsier	MODERN SPECIES	7210																ENSTSYG00000000269 #22	DNAJC13 (ENSTSYG00000014580)	ACPP (ENSTSYG00000009044)
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666.d #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a.`b #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Bushbaby	MODERN SPECIES	169	ERO1A (ENSOGAG00000010005)	PSMC6 (ENSOGAG00000010011)	STYX (ENSOGAG00000010012) #7	GNPNAT1 (ENSOGAG00000010015) #8	FERMT2 (ENSOGAG00000010017) #9	ENSOGAG00000017230 #11	ENSOGAG00000025273	BMP4 (ENSOGAG00000031354) #12	CDKN3 (ENSOGAG00000009667) #13	CNIH1 (ENSOGAG00000024582) #14	GMFB (ENSOGAG00000009669) #15	CGRRF1 (ENSOGAG00000009674) #16	SAMD4A (ENSOGAG00000009678) #18	GCH1 (ENSOGAG00000006341) #20	WDHD1 (ENSOGAG00000003465) #21	SOCS4 (ENSOGAG00000003470) #22	MAPK1IP1L (ENSOGAG00000003471) #23	LGALS3 (ENSOGAG00000003473) #24	ENSOGAG00000027526 #25	CKB (ENSOGAG00000026224)	TRMT61A (ENSOGAG00000027762)	BAG5 (ENSOGAG00000031671)	COA8 (ENSOGAG00000015416)	KLC1 (ENSOGAG00000015420)	XRCC3 (ENSOGAG00000015428)	ZFYVE21 (ENSOGAG00000015430)	PPP1R13B (ENSOGAG00000015434)	ENSOGAG00000033456	RD3L (ENSOGAG00000027245)	TDRD9 (ENSOGAG00000007626)	ASPG (ENSOGAG00000024653)
Lemuriformes	ANCESTRAL SPECIES	28	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666.d #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a.`b #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Lemuriformes_a	ANCESTRAL SPECIES	11	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666.d #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a.`b #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT01010000222666	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36	ENSGT00390000012816
Greater bamboo lemur	MODERN SPECIES	1655															WDHD1 (ENSPSMG00000004740) #21	SOCS4 (ENSPSMG00000004787) #22	MAPK1IP1L (ENSPSMG00000004799) #23
Coquerels sifaka	MODERN SPECIES	951	GPR137C (ENSPCOG00000022406)	ERO1A (ENSPCOG00000013561)	ENSPCOG00000028420	ENSPCOG00000015396 #7	GNPNAT1 (ENSPCOG00000026071) #8	FERMT2 (ENSPCOG00000017552) #9	DDHD1 (ENSPCOG00000017439) #11	BMP4 (ENSPCOG00000026776) #12	CDKN3 (ENSPCOG00000028559) #13	CNIH1 (ENSPCOG00000019075) #14	GMFB (ENSPCOG00000018695) #15	CGRRF1 (ENSPCOG00000015848) #16	SAMD4A (ENSPCOG00000023339) #18	GCH1 (ENSPCOG00000005670) #20	WDHD1 (ENSPCOG00000027802) #21	SOCS4 (ENSPCOG00000010117) #22	MAPK1IP1L (ENSPCOG00000025168) #23	LGALS3 (ENSPCOG00000015312) #24	ENSPCOG00000013527	ENSPCOG00000013066	ATG14 (ENSPCOG00000028474) #27	ENSPCOG00000027400	TBPL2 (ENSPCOG00000017685)	KTN1 (ENSPCOG00000027740) #28	ENSPCOG00000014446	PELI2 (ENSPCOG00000021651) #29	TMEM260 (ENSPCOG00000018860) #30	OTX2 (ENSPCOG00000015777) #31	EXOC5 (ENSPCOG00000020197) #32	AP5M1 (ENSPCOG00000021016) #33	NAA30 (ENSPCOG00000022190) #34
Mouse lemur	MODERN SPECIES	22	GPR137C (ENSMICG00000038116)	ERO1A (ENSMICG00000015907)	PSMC6 (ENSMICG00000034788)	ENSMICG00000037736 #7	ENSMICG00000014347 #8	FERMT2 (ENSMICG00000014364) #9	DDHD1 (ENSMICG00000005234) #11	BMP4 (ENSMICG00000011855) #12	CDKN3 (ENSMICG00000016195) #13	ENSMICG00000032621 #14	ENSMICG00000026534 #15	CGRRF1 (ENSMICG00000047854) #16	SAMD4A (ENSMICG00000016212) #18	GCH1 (ENSMICG00000016234) #20	WDHD1 (ENSMICG00000016239) #21	SOCS4 (ENSMICG00000047239) #22	MAPK1IP1L (ENSMICG00000035738) #23	LGALS3 (ENSMICG00000016283) #24	DLGAP5 (ENSMICG00000016289) #25	ENSMICG00000042184	ENSMICG00000041981	ATG14 (ENSMICG00000000939) #27	TBPL2 (ENSMICG00000000943)	KTN1 (ENSMICG00000032329) #28	EAPP (ENSMICG00000044807)	SPTSSA (ENSMICG00000046623)	ENSMICG00000032213	ENSMICG00000047011	EGLN3 (ENSMICG00000000618)	NPAS3 (ENSMICG00000031841)	AKAP6 (ENSMICG00000027865)
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00390000017305	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00390000017305	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34
Suina	ANCESTRAL SPECIES	30	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Pig	MODERN SPECIES		ENSSSCG00000035799	ENSSSCG00000044458	PSMC6 (ENSSSCG00000005038)	STYX (ENSSSCG00000005039) #7	GNPNAT1 (ENSSSCG00000005040) #8	FERMT2 (ENSSSCG00000005041) #9	DDHD1 (ENSSSCG00000005043) #11	BMP4 (ENSSSCG00000005045) #12	CDKN3 (ENSSSCG00000005047) #13	CNIH1 (ENSSSCG00000027256) #14	GMFB (ENSSSCG00000026294) #15	CGRRF1 (ENSSSCG00000021451) #16	SAMD4A (ENSSSCG00000023408) #18	GCH1 (ENSSSCG00000035715) #20	WDHD1 (ENSSSCG00000005052) #21	SOCS4 (ENSSSCG00000032332) #22	MAPK1IP1L (ENSSSCG00000005054) #23	LGALS3 (ENSSSCG00000005055) #24	DLGAP5 (ENSSSCG00000005056) #25	FBXO34 (ENSSSCG00000005057) #26	ATG14 (ENSSSCG00000005058) #27	TBPL2 (ENSSSCG00000005059)	KTN1 (ENSSSCG00000005060) #28	PELI2 (ENSSSCG00000033800) #29	ENSSSCG00000045820	TMEM260 (ENSSSCG00000005062) #30	OTX2 (ENSSSCG00000005063) #31	EXOC5 (ENSSSCG00000005066) #32	AP5M1 (ENSSSCG00000005065) #33	ENSSSCG00000055062	ENSSSCG00000057475
Chacoan peccary	MODERN SPECIES	785	GPR137C (ENSCWAG00000012687)	ERO1A (ENSCWAG00000012612)	PSMC6 (ENSCWAG00000012553)	STYX (ENSCWAG00000012433) #7	GNPNAT1 (ENSCWAG00000012384) #8	FERMT2 (ENSCWAG00000012297) #9	DDHD1 (ENSCWAG00000011731) #11	BMP4 (ENSCWAG00000011680) #12	CDKN3 (ENSCWAG00000010900) #13	CNIH1 (ENSCWAG00000010737) #14	GMFB (ENSCWAG00000010680) #15	CGRRF1 (ENSCWAG00000010651) #16	SAMD4A (ENSCWAG00000010550) #18	GCH1 (ENSCWAG00000010495) #20	WDHD1 (ENSCWAG00000010287) #21	SOCS4 (ENSCWAG00000010261) #22	MAPK1IP1L (ENSCWAG00000010227) #23	LGALS3 (ENSCWAG00000010186) #24	DLGAP5 (ENSCWAG00000010138) #25	FBXO34 (ENSCWAG00000010117) #26	ATG14 (ENSCWAG00000010041) #27	TBPL2 (ENSCWAG00000009986)	KTN1 (ENSCWAG00000008232) #28	PELI2 (ENSCWAG00000008094) #29	TMEM260 (ENSCWAG00000007995) #30	ENSCWAG00000007953	EXOC5 (ENSCWAG00000007866) #32	AP5M1 (ENSCWAG00000007815) #33	NAA30 (ENSCWAG00000007778) #34	CCDC198 (ENSCWAG00000007702) #35	SLC35F4 (ENSCWAG00000007638) #36
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00390000017305	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.g.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000155478.bb.b.b	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.g.b #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00950000182901.a.a.a.b.b.b	ENSGT00940000155478.bb.b.b	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00390000003197.i.a.u.b	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.h #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00950000182901.a.a.a.b.b.b	ENSGT00940000155478.bb.b.b	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00390000003197.i.a.u.b	ENSGT00910000144184.r.b	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a.h #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00950000182901.a.a.a.b.b.b	ENSGT00940000155478.bb.b.b	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34
Monodontidae	ANCESTRAL SPECIES	11	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00390000003197.i.a.u.b	ENSGT00910000144184.r.b	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a.s #14	ENSGT00390000008920.c.a.g.b #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00950000182901.a.a.a.b.b.b	ENSGT00940000155478.bb.b.b	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00940000154663.q	ENSGT00390000012837 #32	ENSGT00390000006191 #33
Narwhal	MODERN SPECIES	308	PSMC6 (ENSMMNG00015016393)	STYX (ENSMMNG00015016425) #7	GNPNAT1 (ENSMMNG00015016461) #8	FERMT2 (ENSMMNG00015016523) #9	DDHD1 (ENSMMNG00015016673) #11	ENSMMNG00015016789	ENSMMNG00015016821	BMP4 (ENSMMNG00015016843) #12	CDKN3 (ENSMMNG00015016910) #13	ENSMMNG00015017093 #14	GMFB (ENSMMNG00015017167) #15	CGRRF1 (ENSMMNG00015017201) #16	SAMD4A (ENSMMNG00015017239) #18	GCH1 (ENSMMNG00015017294) #20	WDHD1 (ENSMMNG00015017368) #21	SOCS4 (ENSMMNG00015017397) #22	MAPK1IP1L (ENSMMNG00015017408) #23	ENSMMNG00015017426	LGALS3 (ENSMMNG00015017442) #24	DLGAP5 (ENSMMNG00015017479) #25	FBXO34 (ENSMMNG00015017528) #26	ATG14 (ENSMMNG00015017545) #27	TBPL2 (ENSMMNG00015017587)	KTN1 (ENSMMNG00015018038) #28	PELI2 (ENSMMNG00015019176) #29	TMEM260 (ENSMMNG00015019211) #30	OTX2 (ENSMMNG00015019252) #31	ENSMMNG00015019287	EXOC5 (ENSMMNG00015019327) #32	AP5M1 (ENSMMNG00015019394) #33	NAA30 (ENSMMNG00015019499) #34
Beluga whale	MODERN SPECIES	44	ERO1A (ENSDLEG00000007383)	PSMC6 (ENSDLEG00000007372)	STYX (ENSDLEG00000007363) #7	GNPNAT1 (ENSDLEG00000007354) #8	FERMT2 (ENSDLEG00000007306) #9	DDHD1 (ENSDLEG00000007258) #11	ENSDLEG00000007241	ENSDLEG00000007237	BMP4 (ENSDLEG00000007233) #12	CDKN3 (ENSDLEG00000007222) #13	ENSDLEG00000007214 #14	GMFB (ENSDLEG00000007201) #15	CGRRF1 (ENSDLEG00000007156) #16	SAMD4A (ENSDLEG00000007119) #18	GCH1 (ENSDLEG00000007091) #20	SOCS4 (ENSDLEG00000007089) #22	MAPK1IP1L (ENSDLEG00000007080) #23	ENSDLEG00000007058	ENSDLEG00000007055	WDHD1 (ENSDLEG00000007038) #21	LGALS3 (ENSDLEG00000007025) #24	DLGAP5 (ENSDLEG00000006991) #25	FBXO34 (ENSDLEG00000006987) #26	ATG14 (ENSDLEG00000006979) #27	TBPL2 (ENSDLEG00000006963)	ENSDLEG00000006961	KTN1 (ENSDLEG00000006868) #28	ENSDLEG00000006850	PELI2 (ENSDLEG00000006843) #29	TMEM260 (ENSDLEG00000006827) #30	OTX2 (ENSDLEG00000006819) #31
Vaquita	MODERN SPECIES	11	ERO1A (ENSPSNG00000017782)	PSMC6 (ENSPSNG00000017834)	STYX (ENSPSNG00000017897) #7	GNPNAT1 (ENSPSNG00000017942) #8	FERMT2 (ENSPSNG00000018008) #9	DDHD1 (ENSPSNG00000018156) #11	ENSPSNG00000006071	BMP4 (ENSPSNG00000006096) #12	CDKN3 (ENSPSNG00000006158) #13	CNIH1 (ENSPSNG00000006269) #14	GMFB (ENSPSNG00000006368) #15	CGRRF1 (ENSPSNG00000006436) #16	SAMD4A (ENSPSNG00000006496) #18	GCH1 (ENSPSNG00000006579) #20	WDHD1 (ENSPSNG00000006660) #21	SOCS4 (ENSPSNG00000006729) #22	MAPK1IP1L (ENSPSNG00000006743) #23	ENSPSNG00000006777	LGALS3 (ENSPSNG00000006790) #24	DLGAP5 (ENSPSNG00000006832) #25	FBXO34 (ENSPSNG00000006956) #26	ATG14 (ENSPSNG00000007026) #27	TBPL2 (ENSPSNG00000007063)	KTN1 (ENSPSNG00000007288) #28	PELI2 (ENSPSNG00000007728) #29	TMEM260 (ENSPSNG00000007769) #30	OTX2 (ENSPSNG00000007834) #31	EXOC5 (ENSPSNG00000007938) #32	AP5M1 (ENSPSNG00000008044) #33	NAA30 (ENSPSNG00000008083) #34	CCDC198 (ENSPSNG00000008124) #35
Sperm whale	MODERN SPECIES	2	GPR137C (ENSPCTG00005022295)	ERO1A (ENSPCTG00005022372)	PSMC6 (ENSPCTG00005022450)	STYX (ENSPCTG00005022505) #7	GNPNAT1 (ENSPCTG00005022539) #8	FERMT2 (ENSPCTG00005022579) #9	DDHD1 (ENSPCTG00005022649) #11	BMP4 (ENSPCTG00005022670) #12	CDKN3 (ENSPCTG00005022672) #13	CNIH1 (ENSPCTG00005022675) #14	GMFB (ENSPCTG00005022677) #15	CGRRF1 (ENSPCTG00005022680) #16	SAMD4A (ENSPCTG00005022681) #18	GCH1 (ENSPCTG00005022684) #20	WDHD1 (ENSPCTG00005022686) #21	SOCS4 (ENSPCTG00005022691) #22	MAPK1IP1L (ENSPCTG00005022693) #23	ENSPCTG00005022694	ENSPCTG00005022696	LGALS3 (ENSPCTG00005022698) #24	DLGAP5 (ENSPCTG00005022701) #25	FBXO34 (ENSPCTG00005022704) #26	ATG14 (ENSPCTG00005022705) #27	TBPL2 (ENSPCTG00005022707)	ENSPCTG00005022708	KTN1 (ENSPCTG00005022715) #28	PELI2 (ENSPCTG00005022734) #29	TMEM260 (ENSPCTG00005022736) #30	OTX2 (ENSPCTG00005022740) #31	EXOC5 (ENSPCTG00005022744) #32	AP5M1 (ENSPCTG00005022748) #33
Blue whale	MODERN SPECIES	11	ERO1A (ENSBMSG00010005172)	PSMC6 (ENSBMSG00010005191)	ENSBMSG00010005205 #7	GNPNAT1 (ENSBMSG00010005228) #8	FERMT2 (ENSBMSG00010005249) #9	DDHD1 (ENSBMSG00010005355) #11	ENSBMSG00010005398	ENSBMSG00010005415	CDKN3 (ENSBMSG00010005456) #13	CNIH1 (ENSBMSG00010005508) #14	ENSBMSG00010005542 #15	CGRRF1 (ENSBMSG00010005565) #16	SAMD4A (ENSBMSG00010005603) #18	GCH1 (ENSBMSG00010005645) #20	WDHD1 (ENSBMSG00010005666) #21	SOCS4 (ENSBMSG00010005678) #22	MAPK1IP1L (ENSBMSG00010005701) #23	ENSBMSG00010005724	LGALS3 (ENSBMSG00010005740) #24	ENSBMSG00010005771	FBXO34 (ENSBMSG00010005804) #26	ATG14 (ENSBMSG00010005829) #27	TBPL2 (ENSBMSG00010005889)	KTN1 (ENSBMSG00010005998) #28	ENSBMSG00010006087	ENSBMSG00010006103	PELI2 (ENSBMSG00010006118) #29	TMEM260 (ENSBMSG00010006197) #30	ENSBMSG00010006244 #31	EXOC5 (ENSBMSG00010006288) #32	NAA30 (ENSBMSG00010006423) #34
Pecora	ANCESTRAL SPECIES	6	ENSGT00940000161792	ENSGT00390000008240.m	ENSGT00390000008240.n	ENSGT00940000160291	ENSGT00550000074781	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Yarkand deer	MODERN SPECIES	3	DUOXA1 (ENSCHYG00000012051)	DUOXA2 (ENSCHYG00000012114)	DUOX2 (ENSCHYG00000012306)	SORD (ENSCHYG00000012685)	FERMT2 (ENSCHYG00000012885) #9	DDHD1 (ENSCHYG00000013189) #11	ENSCHYG00000013717	BMP4 (ENSCHYG00000013745) #12	ENSCHYG00000013842 #13	GMFB (ENSCHYG00000014201) #15	CGRRF1 (ENSCHYG00000014731) #16	SAMD4A (ENSCHYG00000014855) #18	ENSCHYG00000015111	GCH1 (ENSCHYG00000015214) #20	WDHD1 (ENSCHYG00000015390) #21	SOCS4 (ENSCHYG00000015826) #22	MAPK1IP1L (ENSCHYG00000015882) #23	LGALS3 (ENSCHYG00000015987) #24	DLGAP5 (ENSCHYG00000016132) #25	ENSCHYG00000016406	FBXO34 (ENSCHYG00000016434) #26	ATG14 (ENSCHYG00000016469) #27	TBPL2 (ENSCHYG00000016629)	KTN1 (ENSCHYG00000016827) #28	ENSCHYG00000006063	PELI2 (ENSCHYG00000006092) #29	ENSCHYG00000006139	TMEM260 (ENSCHYG00000006158) #30	OTX2 (ENSCHYG00000006298) #31	ENSCHYG00000006338	EXOC5 (ENSCHYG00000006373) #32
Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000161792	ENSGT00390000008240.m	ENSGT00390000008240.n	ENSGT00940000160291	ENSGT00550000074781	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000161792	ENSGT00390000008240.m	ENSGT00390000008240.n	ENSGT00940000160291	ENSGT00550000074781	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a.x #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Bovinae	ANCESTRAL SPECIES	11	ENSGT00390000008240.m	ENSGT00390000008240.n	ENSGT00940000160291	ENSGT00550000074781	ENSGT00390000002398.e.b	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a.x #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Bos	ANCESTRAL SPECIES	13	ENSGT00940000160291	ENSGT00550000074781	ENSGT00390000002398.e.b	ENSGT01100000263506.a.e.a.a.a.b.a.a.a.c.a.a.a	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT01030000234574.B.c.a.b	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a.x #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000160291	ENSGT00550000074781	ENSGT00390000002398.e.b	ENSGT01100000263506.a.e.a.a.a.b.a.a.a.c.a.a.a	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT01030000234574.B.c.a.b	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a.x #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Domestic yak	MODERN SPECIES	2	DUOX2 (ENSBGRG00000020426)	SORD (ENSBGRG00000020659)	ENSBGRG00000021022	FERMT2 (ENSBGRG00000021063) #9	DDHD1 (ENSBGRG00000021474) #11	ENSBGRG00000022535	BMP4 (ENSBGRG00000022589) #12	ENSBGRG00000022641	CDKN3 (ENSBGRG00000022709) #13	CNIH1 (ENSBGRG00000023478) #14	GMFB (ENSBGRG00000023690) #15	CGRRF1 (ENSBGRG00000023733) #16	SAMD4A (ENSBGRG00000023839) #18	ENSBGRG00000023979 #20	WDHD1 (ENSBGRG00000024184) #21	SOCS4 (ENSBGRG00000024612) #22	MAPK1IP1L (ENSBGRG00000024622) #23	LGALS3 (ENSBGRG00000024654) #24	DLGAP5 (ENSBGRG00000003622) #25	FBXO34 (ENSBGRG00000003724) #26	ATG14 (ENSBGRG00000003787) #27	TBPL2 (ENSBGRG00000004017)	KTN1 (ENSBGRG00000004134) #28	PELI2 (ENSBGRG00000004832) #29	ENSBGRG00000004886	TMEM260 (ENSBGRG00000004946) #30	OTX2 (ENSBGRG00000005329) #31	EXOC5 (ENSBGRG00000005408) #32	AP5M1 (ENSBGRG00000005692) #33	NAA30 (ENSBGRG00000005732) #34	CCDC198 (ENSBGRG00000005763) #35
Wild yak	MODERN SPECIES	1732										CNIH1 (ENSBMUG00000010216) #14	GMFB (ENSBMUG00000010144) #15	CGRRF1 (ENSBMUG00000010131) #16	SAMD4A (ENSBMUG00000010100) #18	GCH1 (ENSBMUG00000009964) #20	WDHD1 (ENSBMUG00000009904) #21	SOCS4 (ENSBMUG00000009882) #22	MAPK1IP1L (ENSBMUG00000009871) #23	LGALS3 (ENSBMUG00000009866) #24	DLGAP5 (ENSBMUG00000009850) #25	FBXO34 (ENSBMUG00000009822) #26	ATG14 (ENSBMUG00000009811) #27	TBPL2 (ENSBMUG00000009785)
Bos_b	ANCESTRAL SPECIES	11	ENSGT00940000160291	ENSGT00550000074781	ENSGT00390000002398.e.b	ENSGT01100000263506.a.e.a.a.a.b.a.a.a.c.a.a.a	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT01030000234574.B.c.a.b	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a.x #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Hybrid Bos Indicus	MODERN SPECIES	1	DUOX2 (ENSBIXG00005007113)	SORD (ENSBIXG00005013158)	ENSBIXG00005013027	ENSBIXG00005013018	FERMT2 (ENSBIXG00005006212) #9	DDHD1 (ENSBIXG00005006721) #11	ENSBIXG00005012619	BMP4 (ENSBIXG00005006112) #12	ENSBIXG00005012544 #13	CNIH1 (ENSBIXG00005012495) #14	GMFB (ENSBIXG00005012386) #15	CGRRF1 (ENSBIXG00005001312) #16	SAMD4A (ENSBIXG00005001301) #18	GCH1 (ENSBIXG00005012299) #20	WDHD1 (ENSBIXG00005012265) #21	SOCS4 (ENSBIXG00005012221) #22	MAPK1IP1L (ENSBIXG00005005824) #23	ENSBIXG00005001258	LGALS3 (ENSBIXG00005012181) #24	DLGAP5 (ENSBIXG00005012158) #25	FBXO34 (ENSBIXG00005012099) #26	ATG14 (ENSBIXG00005005821) #27	TBPL2 (ENSBIXG00005011981)	KTN1 (ENSBIXG00005011805) #28	PELI2 (ENSBIXG00005000985) #29	ENSBIXG00005000589	ENSBIXG00005010923	ENSBIXG00005010907	TMEM260 (ENSBIXG00005006780) #30	OTX2 (ENSBIXG00005010652) #31	EXOC5 (ENSBIXG00005010619) #32
Cow	MODERN SPECIES	1	DUOXA2 (ENSBTAG00000016239)	DUOX2 (ENSBTAG00000016234)	SORD (ENSBTAG00000025496)	ENSBTAG00000052848	ENSBTAG00000047170	FERMT2 (ENSBTAG00000014501) #9	DDHD1 (ENSBTAG00000019924) #11	BMP4 (ENSBTAG00000003835) #12	CDKN3 (ENSBTAG00000019496) #13	CNIH1 (ENSBTAG00000019500) #14	GMFB (ENSBTAG00000054095) #15	CGRRF1 (ENSBTAG00000017141) #16	SAMD4A (ENSBTAG00000001468) #18	GCH1 (ENSBTAG00000040151) #20	WDHD1 (ENSBTAG00000019120) #21	SOCS4 (ENSBTAG00000021988) #22	MAPK1IP1L (ENSBTAG00000021986) #23	LGALS3 (ENSBTAG00000002326) #24	DLGAP5 (ENSBTAG00000002331) #25	FBXO34 (ENSBTAG00000020533) #26	ENSBTAG00000051943	ATG14 (ENSBTAG00000010795) #27	TBPL2 (ENSBTAG00000018277)	KTN1 (ENSBTAG00000017713) #28	PELI2 (ENSBTAG00000005141) #29	TMEM260 (ENSBTAG00000030881) #30	OTX2 (ENSBTAG00000014741) #31	ENSBTAG00000051793	EXOC5 (ENSBTAG00000013042) #32	AP5M1 (ENSBTAG00000013043) #33	NAA30 (ENSBTAG00000012998) #34
American bison	MODERN SPECIES	3170	DUOXA1 (ENSBBBG00000004518)	DUOXA2 (ENSBBBG00000018452)	DUOX2 (ENSBBBG00000018501)	SORD (ENSBBBG00000004560)	ENSBBBG00000018520	FERMT2 (ENSBBBG00000007508) #9	DDHD1 (ENSBBBG00000004625) #11	BMP4 (ENSBBBG00000018643) #12	CDKN3 (ENSBBBG00000018754) #13	CNIH1 (ENSBBBG00000018822) #14	GMFB (ENSBBBG00000018858) #15	CGRRF1 (ENSBBBG00000018871) #16	SAMD4A (ENSBBBG00000004789) #18	GCH1 (ENSBBBG00000018927) #20	WDHD1 (ENSBBBG00000004815) #21	SOCS4 (ENSBBBG00000004821) #22	MAPK1IP1L (ENSBBBG00000018974) #23	LGALS3 (ENSBBBG00000004851) #24	DLGAP5 (ENSBBBG00000008355) #25	FBXO34 (ENSBBBG00000019056) #26	ATG14 (ENSBBBG00000019076) #27	TBPL2 (ENSBBBG00000019082)	KTN1 (ENSBBBG00000005359) #28	ENSBBBG00000019861 #10	ENSBBBG00000019867	PELI2 (ENSBBBG00000005390) #29	TMEM260 (ENSBBBG00000005126) #30	ENSBBBG00000019961	ENSBBBG00000007439	EXOC5 (ENSBBBG00000020012) #32	AP5M1 (ENSBBBG00000020032) #33
Caprinae	ANCESTRAL SPECIES	11	ENSGT00940000161792	ENSGT00390000008240.m	ENSGT00390000008240.n	ENSGT00940000160291	ENSGT00550000074781	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a.x #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014.rb.a #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Rambouillet Sheep	MODERN SPECIES	23	DUOX1 (ENSOARG00020010050)	DUOXA1 (ENSOARG00020011656)	DUOXA2 (ENSOARG00020011766)	DUOX2 (ENSOARG00020011873)	SORD (ENSOARG00020012388)	FERMT2 (ENSOARG00020012866) #9	DDHD1 (ENSOARG00020013495) #11	BMP4 (ENSOARG00020014655) #12	CDKN3 (ENSOARG00020014749) #13	CNIH1 (ENSOARG00020015091) #14	GMFB (ENSOARG00020015342) #15	CGRRF1 (ENSOARG00020015430) #16	SAMD4A (ENSOARG00020015503) #18	GCH1 (ENSOARG00020015916) #20	WDHD1 (ENSOARG00020016059) #21	SOCS4 (ENSOARG00020016372) #22	MAPK1IP1L (ENSOARG00020016392) #23	LGALS3 (ENSOARG00020016446) #24	DLGAP5 (ENSOARG00020016493) #25	FBXO34 (ENSOARG00020016670) #26	ATG14 (ENSOARG00020016704) #27	TBPL2 (ENSOARG00020016918)	KTN1 (ENSOARG00020017183) #28	PELI2 (ENSOARG00020019043) #29	ENSOARG00020019111 #30	OTX2 (ENSOARG00020019426) #31	EXOC5 (ENSOARG00020019509) #32	AP5M1 (ENSOARG00020020008) #33	NAA30 (ENSOARG00020020150) #34	CCDC198 (ENSOARG00020020200) #35	ENSOARG00020020321
Goat	MODERN SPECIES	1	DUOXA2 (ENSCHIG00000010151)	DUOX2 (ENSCHIG00000012801)	SORD (ENSCHIG00000021458)	ENSCHIG00000012549	FERMT2 (ENSCHIG00000023803) #9	DDHD1 (ENSCHIG00000025888) #11	ENSCHIG00000008708	BMP4 (ENSCHIG00000021149) #12	CDKN3 (ENSCHIG00000010569) #13	CNIH1 (ENSCHIG00000021943) #14	GMFB (ENSCHIG00000022138) #15	CGRRF1 (ENSCHIG00000023916) #16	SAMD4A (ENSCHIG00000016091) #18	GCH1 (ENSCHIG00000018987) #20	WDHD1 (ENSCHIG00000017956) #21	SOCS4 (ENSCHIG00000008618) #22	MAPK1IP1L (ENSCHIG00000015375) #23	LGALS3 (ENSCHIG00000011567) #24	DLGAP5 (ENSCHIG00000017688) #25	ATG14 (ENSCHIG00000015773) #27	TBPL2 (ENSCHIG00000026824)	KTN1 (ENSCHIG00000025347) #28	PELI2 (ENSCHIG00000015413) #29	ENSCHIG00000021274	TMEM260 (ENSCHIG00000018277) #30	OTX2 (ENSCHIG00000011465) #31	EXOC5 (ENSCHIG00000021413) #32	AP5M1 (ENSCHIG00000017238) #33	NAA30 (ENSCHIG00000014880) #34	CCDC198 (ENSCHIG00000027108) #35	SLC35F4 (ENSCHIG00000023214) #36
Siberian musk deer	MODERN SPECIES	257	DUOXA2 (ENSMMSG00000012519)	DUOX2 (ENSMMSG00000012565)	ENSMMSG00000012770	ENSMMSG00000012843	FERMT2 (ENSMMSG00000012876) #9	DDHD1 (ENSMMSG00000012936) #11	BMP4 (ENSMMSG00000013092) #12	ENSMMSG00000013129 #13	ENSMMSG00000013239 #14	GMFB (ENSMMSG00000013304) #15	ENSMMSG00000013332	CGRRF1 (ENSMMSG00000013338) #16	SAMD4A (ENSMMSG00000013364) #18	GCH1 (ENSMMSG00000013426) #20	WDHD1 (ENSMMSG00000013473) #21	SOCS4 (ENSMMSG00000013584) #22	MAPK1IP1L (ENSMMSG00000013588) #23	LGALS3 (ENSMMSG00000004398) #24	DLGAP5 (ENSMMSG00000004423) #25	FBXO34 (ENSMMSG00000004454) #26	ATG14 (ENSMMSG00000004466) #27	TBPL2 (ENSMMSG00000004490)	KTN1 (ENSMMSG00000004871) #28	PELI2 (ENSMMSG00000006292) #29	TMEM260 (ENSMMSG00000006329) #30
Camelidae	ANCESTRAL SPECIES	8	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00390000017305	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34
Alpaca	MODERN SPECIES	384														GCH1 (ENSVPAG00000008393) #20	WDHD1 (ENSVPAG00000008394) #21	SOCS4 (ENSVPAG00000008397) #22	MAPK1IP1L (ENSVPAG00000008398) #23
Arabian camel	MODERN SPECIES	32	GPR137C (ENSCDRG00005001479)	ERO1A (ENSCDRG00005001546)	PSMC6 (ENSCDRG00005001579)	STYX (ENSCDRG00005001628) #7	GNPNAT1 (ENSCDRG00005001646) #8	FERMT2 (ENSCDRG00005001748) #9	DDHD1 (ENSCDRG00005002084) #11	BMP4 (ENSCDRG00005002167) #12	CDKN3 (ENSCDRG00005002199) #13	CNIH1 (ENSCDRG00005002277) #14	GMFB (ENSCDRG00005002332) #15	CGRRF1 (ENSCDRG00005002347) #16	SAMD4A (ENSCDRG00005002374) #18	GCH1 (ENSCDRG00005002407) #20	WDHD1 (ENSCDRG00005002444) #21	SOCS4 (ENSCDRG00005002490) #22	MAPK1IP1L (ENSCDRG00005002501) #23	ENSCDRG00005002516	LGALS3 (ENSCDRG00005002528) #24	DLGAP5 (ENSCDRG00005002556) #25	FBXO34 (ENSCDRG00005002574) #26	ATG14 (ENSCDRG00005002589) #27	TBPL2 (ENSCDRG00005002602)	KTN1 (ENSCDRG00005002748) #28	PELI2 (ENSCDRG00005003235) #29	ENSCDRG00005003243	ENSCDRG00005003257	TMEM260 (ENSCDRG00005003273) #30	ENSCDRG00005003291	OTX2 (ENSCDRG00005003304) #31	EXOC5 (ENSCDRG00005003347) #32
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00390000017305	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33
Carnivora	ANCESTRAL SPECIES		ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Caniformia	ANCESTRAL SPECIES	15	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Canidae	ANCESTRAL SPECIES	4	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00530000063715.a.o	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224.e #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00530000063715.a.o	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00510000047486.f.a	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34
Dog	MODERN SPECIES	36	STYX (ENSCAFG00845003962) #7	GNPNAT1 (ENSCAFG00845004007) #8	FERMT2 (ENSCAFG00845004100) #9	ENSCAFG00845004171	DDHD1 (ENSCAFG00845004250) #11	BMP4 (ENSCAFG00845004370) #12	ENSCAFG00845004381	ENSCAFG00845004393	CDKN3 (ENSCAFG00845004444) #13	GMFB (ENSCAFG00845004489) #14	GMFB (ENSCAFG00845004525) #15	CGRRF1 (ENSCAFG00845004543) #16	SAMD4A (ENSCAFG00845004567) #18	GCH1 (ENSCAFG00845014724) #20	WDHD1 (ENSCAFG00845014810) #21	SOCS4 (ENSCAFG00845014951) #22	MAPK1IP1L (ENSCAFG00845014969) #23	LGALS3 (ENSCAFG00845015017) #24	DLGAP5 (ENSCAFG00845015070) #25	FBXO34 (ENSCAFG00845015219) #26	ATG14 (ENSCAFG00845015264) #27	TBPL2 (ENSCAFG00845015295)	KTN1 (ENSCAFG00845015557) #28	ENSCAFG00845016467	PELI2 (ENSCAFG00845016504) #29	TMEM260 (ENSCAFG00845016875) #30	OTX2 (ENSCAFG00845017045) #31	ENSCAFG00845017134	ENSCAFG00845017176	EXOC5 (ENSCAFG00845017251) #32	AP5M1 (ENSCAFG00845017449) #33
Dingo	MODERN SPECIES	161	STYX (ENSCAFG00020018470) #7	GNPNAT1 (ENSCAFG00020018468) #8	ENSCAFG00020018465	FERMT2 (ENSCAFG00020018459) #9	DDHD1 (ENSCAFG00020018323) #11	BMP4 (ENSCAFG00020018307) #12	ENSCAFG00020018305	ENSCAFG00020018304	CDKN3 (ENSCAFG00020018297) #13	CNIH1 (ENSCAFG00020018294) #14	GMFB (ENSCAFG00020018285) #15	CGRRF1 (ENSCAFG00020018279) #16	SAMD4A (ENSCAFG00020018263) #18	GCH1 (ENSCAFG00020018258) #20	ENSCAFG00020018255 #21	SOCS4 (ENSCAFG00020018243) #22	MAPK1IP1L (ENSCAFG00020018241) #23	ENSCAFG00020018238	ENSCAFG00020018232 #24	ENSCAFG00020018229	FBXO34 (ENSCAFG00020018223) #26	ATG14 (ENSCAFG00020018215) #27	TBPL2 (ENSCAFG00020018212)	KTN1 (ENSCAFG00020009732) #28	ENSCAFG00020009364	PELI2 (ENSCAFG00020009324) #29	ENSCAFG00020009272 #30	ENSCAFG00020009268 #30	OTX2 (ENSCAFG00020009252) #31	ENSCAFG00020009216	EXOC5 (ENSCAFG00020009052) #32
Red fox	MODERN SPECIES	33	ERO1A (ENSVVUG00000029703)	PSMC6 (ENSVVUG00000029693)	STYX (ENSVVUG00000029692) #7	GNPNAT1 (ENSVVUG00000029691) #8	FERMT2 (ENSVVUG00000029687) #9	DDHD1 (ENSVVUG00000029678) #11	BMP4 (ENSVVUG00000029671) #12	ENSVVUG00000029670	CDKN3 (ENSVVUG00000029666) #13	CNIH1 (ENSVVUG00000029665) #14	GMFB (ENSVVUG00000029664) #15	CGRRF1 (ENSVVUG00000029662) #16	SAMD4A (ENSVVUG00000029659) #18	GCH1 (ENSVVUG00000029657) #20	WDHD1 (ENSVVUG00000029613) #21	SOCS4 (ENSVVUG00000029609) #22	MAPK1IP1L (ENSVVUG00000029608) #23	LGALS3 (ENSVVUG00000029604) #24	DLGAP5 (ENSVVUG00000029600) #25	FBXO34 (ENSVVUG00000029599) #26	ATG14 (ENSVVUG00000029598) #27	TBPL2 (ENSVVUG00000029597)	KTN1 (ENSVVUG00000029589) #28	ENSVVUG00000029584	PELI2 (ENSVVUG00000029582) #29	TMEM260 (ENSVVUG00000029578) #30	OTX2 (ENSVVUG00000029575) #31	EXOC5 (ENSVVUG00000029570) #32	AP5M1 (ENSVVUG00000029565) #33	NAA30 (ENSVVUG00000029563) #34	CCDC198 (ENSVVUG00000029562) #35
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Ursidae	ANCESTRAL SPECIES	10	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a.q.b #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224.l #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Ursus	ANCESTRAL SPECIES	11	ENSGT00390000006080	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a.q.b #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224.l #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544.m #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00950000185672	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Polar bear	MODERN SPECIES	100	TXNDC16 (ENSUMAG00000014494)	ERO1A (ENSUMAG00000014509)	PSMC6 (ENSUMAG00000014516)	STYX (ENSUMAG00000014548) #7	GNPNAT1 (ENSUMAG00000014715) #8	FERMT2 (ENSUMAG00000014783) #9	ENSUMAG00000015699 #9	DDHD1 (ENSUMAG00000015721) #11	BMP4 (ENSUMAG00000015839) #12	CDKN3 (ENSUMAG00000015850) #13	CNIH1 (ENSUMAG00000015855) #14	GMFB (ENSUMAG00000015859) #15	CGRRF1 (ENSUMAG00000015863) #16	SAMD4A (ENSUMAG00000015883) #18	WDHD1 (ENSUMAG00000015946) #21	SOCS4 (ENSUMAG00000015967) #22	MAPK1IP1L (ENSUMAG00000015971) #23	LGALS3 (ENSUMAG00000015989) #24	DLGAP5 (ENSUMAG00000016056) #25	FBXO34 (ENSUMAG00000016344) #26	ATG14 (ENSUMAG00000016349) #27	TBPL2 (ENSUMAG00000016364)	KTN1 (ENSUMAG00000016377) #28	PELI2 (ENSUMAG00000016490) #29	TMEM260 (ENSUMAG00000016516) #30	OTX2 (ENSUMAG00000016526) #31	EXOC5 (ENSUMAG00000016546) #32	AP5M1 (ENSUMAG00000016550) #33	ENSUMAG00000016554	ENSUMAG00000016559 #35	SLC35F4 (ENSUMAG00000016584) #36
American black bear	MODERN SPECIES	2537															ENSUAMG00000015360 #21	SOCS4 (ENSUAMG00000015357) #22	MAPK1IP1L (ENSUAMG00000015356) #23	LGALS3 (ENSUAMG00000015350) #24	ENSUAMG00000015342
Giant Panda	MODERN SPECIES	12	PSMC6 (ENSAMEG00000005202)	STYX (ENSAMEG00000025135) #7	GNPNAT1 (ENSAMEG00000005236) #8	ENSAMEG00000005301	ENSAMEG00000005404	FERMT2 (ENSAMEG00000015209) #9	DDHD1 (ENSAMEG00000015297) #11	BMP4 (ENSAMEG00000015317) #12	CDKN3 (ENSAMEG00000015323) #13	CNIH1 (ENSAMEG00000015325) #14	GMFB (ENSAMEG00000015331) #15	ENSAMEG00000015332 #16	SAMD4A (ENSAMEG00000015339) #18	GCH1 (ENSAMEG00000014412) #20	WDHD1 (ENSAMEG00000014356) #21	SOCS4 (ENSAMEG00000020091) #22	MAPK1IP1L (ENSAMEG00000007059) #23	ENSAMEG00000014782	ENSAMEG00000028851 #24	DLGAP5 (ENSAMEG00000007001) #25	ENSAMEG00000019928 #26	ATG14 (ENSAMEG00000006992) #27	TBPL2 (ENSAMEG00000010603)	KTN1 (ENSAMEG00000015706) #28	PELI2 (ENSAMEG00000030200) #29	ENSAMEG00000028644 #30
Mustelinae	ANCESTRAL SPECIES	14	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00390000003443.e	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
American mink	MODERN SPECIES		PSMC6 (ENSNVIG00000002110)	STYX (ENSNVIG00000002230) #7	GNPNAT1 (ENSNVIG00000002286) #8	ENSNVIG00000002338	FERMT2 (ENSNVIG00000002355) #9	DDHD1 (ENSNVIG00000002423) #11	BMP4 (ENSNVIG00000002596) #12	CDKN3 (ENSNVIG00000002642) #13	CNIH1 (ENSNVIG00000002784) #14	GMFB (ENSNVIG00000002876) #15	CGRRF1 (ENSNVIG00000002909) #16	SAMD4A (ENSNVIG00000002939) #18	GCH1 (ENSNVIG00000003015) #20	ENSNVIG00000003065	WDHD1 (ENSNVIG00000003142) #21	SOCS4 (ENSNVIG00000004005) #22	MAPK1IP1L (ENSNVIG00000004019) #23	ENSNVIG00000004043 #24	DLGAP5 (ENSNVIG00000004141) #25	FBXO34 (ENSNVIG00000004194) #26	ATG14 (ENSNVIG00000004202) #27	TBPL2 (ENSNVIG00000004229)	KTN1 (ENSNVIG00000004281) #28	ENSNVIG00000005026	PELI2 (ENSNVIG00000005040) #29	TMEM260 (ENSNVIG00000005061) #30	OTX2 (ENSNVIG00000005090) #31	EXOC5 (ENSNVIG00000005107) #32	AP5M1 (ENSNVIG00000005136) #33	NAA30 (ENSNVIG00000005154) #34	ENSNVIG00000005174
Ferret	MODERN SPECIES	164	TXNDC16 (ENSMPUG00000005348)	GPR137C (ENSMPUG00000005376)	ERO1A (ENSMPUG00000005389)	PSMC6 (ENSMPUG00000005405)	GNPNAT1 (ENSMPUG00000005416) #8	FERMT2 (ENSMPUG00000005424) #9	DDHD1 (ENSMPUG00000005442) #11	ENSMPUG00000019632	BMP4 (ENSMPUG00000005464) #12	CDKN3 (ENSMPUG00000005473) #13	CNIH1 (ENSMPUG00000005483) #14	CGRRF1 (ENSMPUG00000005503) #16	SAMD4A (ENSMPUG00000005514) #18	GCH1 (ENSMPUG00000005532) #20	WDHD1 (ENSMPUG00000005542) #21	SOCS4 (ENSMPUG00000019634) #22	MAPK1IP1L (ENSMPUG00000005722) #23	ENSMPUG00000005725 #24	DLGAP5 (ENSMPUG00000005767) #25	ENSMPUG00000019635	FBXO34 (ENSMPUG00000005779) #26	ATG14 (ENSMPUG00000005783) #27	TBPL2 (ENSMPUG00000005807)	KTN1 (ENSMPUG00000005844) #28	ENSMPUG00000005878	PELI2 (ENSMPUG00000005892) #29	ENSMPUG00000005902	TMEM260 (ENSMPUG00000005908) #30	OTX2 (ENSMPUG00000005923) #31	EXOC5 (ENSMPUG00000005928) #32	AP5M1 (ENSMPUG00000005943) #33
Felidae	ANCESTRAL SPECIES	1	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00550000074828.a.g.a.i	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665.t #34
Panthera	ANCESTRAL SPECIES	3	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00550000074828.a.g.a.i	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665.s #34
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00550000074828.a.g.a.i	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665.s #34
leopard	MODERN SPECIES	21	PSMC6 (ENSPPRG00000009673)	STYX (ENSPPRG00000009889) #7	GNPNAT1 (ENSPPRG00000010199) #8	ENSPPRG00000010792	ENSPPRG00000010964	FERMT2 (ENSPPRG00000012733) #9	DDHD1 (ENSPPRG00000015790) #11	BMP4 (ENSPPRG00000018478) #12	ENSPPRG00000023005 #13	CNIH1 (ENSPPRG00000000800) #14	GMFB (ENSPPRG00000002548) #15	CGRRF1 (ENSPPRG00000003328) #16	SAMD4A (ENSPPRG00000005768) #18	GCH1 (ENSPPRG00000007288) #20	WDHD1 (ENSPPRG00000007679) #21	SOCS4 (ENSPPRG00000017291) #22	MAPK1IP1L (ENSPPRG00000008054) #23	LGALS3 (ENSPPRG00000008301) #24	DLGAP5 (ENSPPRG00000008611) #25	ENSPPRG00000008993	FBXO34 (ENSPPRG00000017336) #26	ATG14 (ENSPPRG00000009688) #27	TBPL2 (ENSPPRG00000010245)	KTN1 (ENSPPRG00000011144) #28	PELI2 (ENSPPRG00000011994) #29	TMEM260 (ENSPPRG00000013149) #30	ENSPPRG00000018058	OTX2 (ENSPPRG00000015487) #31	EXOC5 (ENSPPRG00000023159) #32	AP5M1 (ENSPPRG00000022649) #33	NAA30 (ENSPPRG00000000155) #34
lion	MODERN SPECIES	6	GPR137C (ENSPLOG00000003020)	ERO1A (ENSPLOG00000003049)	PSMC6 (ENSPLOG00000003094)	STYX (ENSPLOG00000003129) #7	GNPNAT1 (ENSPLOG00000003161) #8	FERMT2 (ENSPLOG00000003230) #9	DDHD1 (ENSPLOG00000003371) #11	BMP4 (ENSPLOG00000003510) #12	CDKN3 (ENSPLOG00000003573) #13	CNIH1 (ENSPLOG00000003662) #14	ENSPLOG00000003709 #15	CGRRF1 (ENSPLOG00000003744) #16	SAMD4A (ENSPLOG00000003784) #18	GCH1 (ENSPLOG00000003861) #20	WDHD1 (ENSPLOG00000003925) #21	SOCS4 (ENSPLOG00000004015) #22	MAPK1IP1L (ENSPLOG00000004025) #23	DLGAP5 (ENSPLOG00000004069) #25	LGALS3 (ENSPLOG00000004111) #24	FBXO34 (ENSPLOG00000004129) #26	ATG14 (ENSPLOG00000004138) #27	TBPL2 (ENSPLOG00000004159)	KTN1 (ENSPLOG00000004244) #28	PELI2 (ENSPLOG00000004331) #29	ENSPLOG00000004344	TMEM260 (ENSPLOG00000004368) #30	ENSPLOG00000004390	OTX2 (ENSPLOG00000004396) #31	EXOC5 (ENSPLOG00000004425) #32	AP5M1 (ENSPLOG00000004456) #33	NAA30 (ENSPLOG00000004476) #34
Tiger	MODERN SPECIES	182								BMP4 (ENSPTIG00000017031) #12	CDKN3 (ENSPTIG00000010145) #13	CNIH1 (ENSPTIG00000008402) #14	GMFB (ENSPTIG00000001394) #15	CGRRF1 (ENSPTIG00000020312) #16	SAMD4A (ENSPTIG00000018102) #18	GCH1 (ENSPTIG00000014880) #20	WDHD1 (ENSPTIG00000013608) #21	SOCS4 (ENSPTIG00000006233) #22	MAPK1IP1L (ENSPTIG00000012239) #23	LGALS3 (ENSPTIG00000010541) #24	ENSPTIG00000009312	FBXO34 (ENSPTIG00000006158) #26	ATG14 (ENSPTIG00000003838) #27	TBPL2 (ENSPTIG00000020278)	KTN1 (ENSPTIG00000008416) #28	PELI2 (ENSPTIG00000005034) #29	ENSPTIG00000001520 #30
Cat	MODERN SPECIES	237	GPR137C (ENSFCAG00000010457)	ERO1A (ENSFCAG00000031729)	PSMC6 (ENSFCAG00000012975)	STYX (ENSFCAG00000037476) #7	GNPNAT1 (ENSFCAG00000029027) #8	FERMT2 (ENSFCAG00000029660) #9	DDHD1 (ENSFCAG00000018579) #11	BMP4 (ENSFCAG00000004772) #12	CDKN3 (ENSFCAG00000015089) #13	CNIH1 (ENSFCAG00000031176) #14	GMFB (ENSFCAG00000036042) #15	CGRRF1 (ENSFCAG00000034341) #16	SAMD4A (ENSFCAG00000037990) #18	GCH1 (ENSFCAG00000042127) #20	WDHD1 (ENSFCAG00000023408) #21	SOCS4 (ENSFCAG00000006040) #22	MAPK1IP1L (ENSFCAG00000040319) #23	LGALS3 (ENSFCAG00000041666) #24	DLGAP5 (ENSFCAG00000018943) #25	FBXO34 (ENSFCAG00000003462) #26	ATG14 (ENSFCAG00000029645) #27	TBPL2 (ENSFCAG00000032698)	KTN1 (ENSFCAG00000007834) #28	PELI2 (ENSFCAG00000008685) #29	TMEM260 (ENSFCAG00000026610) #30	ENSFCAG00000042008	OTX2 (ENSFCAG00000024521) #31	EXOC5 (ENSFCAG00000002045) #32	AP5M1 (ENSFCAG00000002046) #33	NAA30 (ENSFCAG00000023358) #34	CCDC198 (ENSFCAG00000043889) #35
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00390000017305	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33
Chiroptera	ANCESTRAL SPECIES	15	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00390000017305	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Microchiroptera	ANCESTRAL SPECIES	19	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Microbat	MODERN SPECIES	1128	STYX (ENSMLUG00000000286) #7	GNPNAT1 (ENSMLUG00000000289) #8	FERMT2 (ENSMLUG00000002453) #9	ENSMLUG00000028379	DDHD1 (ENSMLUG00000012158) #11	ENSMLUG00000025911	BMP4 (ENSMLUG00000001080) #12	CDKN3 (ENSMLUG00000007147) #13	CNIH1 (ENSMLUG00000007163) #14	GMFB (ENSMLUG00000004182) #15	CGRRF1 (ENSMLUG00000004189) #16	SAMD4A (ENSMLUG00000004192) #18	GCH1 (ENSMLUG00000004202) #20	WDHD1 (ENSMLUG00000010353) #21	ENSMLUG00000027650	SOCS4 (ENSMLUG00000007257) #22	MAPK1IP1L (ENSMLUG00000010402) #23	LGALS3 (ENSMLUG00000010408) #24	DLGAP5 (ENSMLUG00000010429) #25
Greater horseshoe bat	MODERN SPECIES	24	ERO1A (ENSRFEG00010001832)	ENSRFEG00010001804	STYX (ENSRFEG00010001780) #7	ENSRFEG00010001763 #8	FERMT2 (ENSRFEG00010001669) #9	DDHD1 (ENSRFEG00010001535) #11	ENSRFEG00010001496	BMP4 (ENSRFEG00010001465) #12	CDKN3 (ENSRFEG00010001427) #13	CNIH1 (ENSRFEG00010001348) #14	GMFB (ENSRFEG00010001300) #15	CGRRF1 (ENSRFEG00010001274) #16	SAMD4A (ENSRFEG00010001221) #18	GCH1 (ENSRFEG00010001174) #20	WDHD1 (ENSRFEG00010001109) #21	SOCS4 (ENSRFEG00010001094) #22	MAPK1IP1L (ENSRFEG00010001080) #23	LGALS3 (ENSRFEG00010001061) #24	DLGAP5 (ENSRFEG00010001027) #25	FBXO34 (ENSRFEG00010001009) #26	ATG14 (ENSRFEG00010000977) #27	TBPL2 (ENSRFEG00010000951)	KTN1 (ENSRFEG00010000612) #28	PELI2 (ENSRFEG00010000362) #29	TMEM260 (ENSRFEG00010000307) #30	ENSRFEG00010000266	OTX2 (ENSRFEG00010000223) #31	EXOC5 (ENSRFEG00010004550) #32	AP5M1 (ENSRFEG00010004511) #33	NAA30 (ENSRFEG00010004478) #34	CCDC198 (ENSRFEG00010004458) #35
Equus	ANCESTRAL SPECIES	17	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652.c #25	ENSGT01010000222666.a	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00910000147073	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Horse	MODERN SPECIES	16	ERO1A (ENSECAG00000013757)	PSMC6 (ENSECAG00000038126)	STYX (ENSECAG00000039023) #7	GNPNAT1 (ENSECAG00000019684) #8	ENSECAG00000051592	FERMT2 (ENSECAG00000020305) #9	DDHD1 (ENSECAG00000014712) #11	BMP4 (ENSECAG00000017676) #12	CDKN3 (ENSECAG00000019433) #13	CNIH1 (ENSECAG00000026814) #14	GMFB (ENSECAG00000046233) #15	CGRRF1 (ENSECAG00000008526) #16	SAMD4A (ENSECAG00000010681) #18	GCH1 (ENSECAG00000015025) #20	WDHD1 (ENSECAG00000015412) #21	SOCS4 (ENSECAG00000004043) #22	MAPK1IP1L (ENSECAG00000026837) #23	LGALS3 (ENSECAG00000006474) #24	DLGAP5 (ENSECAG00000008655) #25	ENSECAG00000046407	FBXO34 (ENSECAG00000004253) #26	ENSECAG00000060062	ATG14 (ENSECAG00000011752) #27	KTN1 (ENSECAG00000015910) #28	ENSECAG00000049836	PELI2 (ENSECAG00000015134) #29	ENSECAG00000004449	ENSECAG00000032860	ENSECAG00000051160	TMEM260 (ENSECAG00000020360) #30	ENSECAG00000041026
Donkey	MODERN SPECIES	27	ENSEASG00005003913	ERO1A (ENSEASG00005003909)	PSMC6 (ENSEASG00005003903)	STYX (ENSEASG00005025850) #7	GNPNAT1 (ENSEASG00005028931) #8	FERMT2 (ENSEASG00005003881) #9	DDHD1 (ENSEASG00005003386) #11	BMP4 (ENSEASG00005003287) #12	CDKN3 (ENSEASG00005003194) #13	CNIH1 (ENSEASG00005003178) #14	ENSEASG00005035414 #15	CGRRF1 (ENSEASG00005003172) #16	SAMD4A (ENSEASG00005003163) #18	GCH1 (ENSEASG00005003158) #20	WDHD1 (ENSEASG00005003145) #21	SOCS4 (ENSEASG00005003134) #22	MAPK1IP1L (ENSEASG00005003133) #23	LGALS3 (ENSEASG00005003129) #24	DLGAP5 (ENSEASG00005032626) #25	FBXO34 (ENSEASG00005016397) #26	ENSEASG00005032596	ATG14 (ENSEASG00005016393) #27	KTN1 (ENSEASG00005016364) #28	PELI2 (ENSEASG00005016348) #29	ENSEASG00005036923	TMEM260 (ENSEASG00005016299) #30	OTX2 (ENSEASG00005026100) #31	EXOC5 (ENSEASG00005016272) #32	AP5M1 (ENSEASG00005016268) #33	NAA30 (ENSEASG00005016267) #34	CCDC198 (ENSEASG00005016260) #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000161456 #22
Hedgehog	MODERN SPECIES	11698																SOCS4 (ENSEEUG00000007188) #22
Atlantogenata	ANCESTRAL SPECIES	8	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Xenarthra	ANCESTRAL SPECIES	381												ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29
Armadillo	MODERN SPECIES	2985							NWD2 (ENSDNOG00000005283)	C4orf19 (ENSDNOG00000017173)	ENSDNOG00000038064	RELL1 (ENSDNOG00000039506)	PGM2 (ENSDNOG00000017856)	CGRRF1 (ENSDNOG00000040453) #16	SAMD4A (ENSDNOG00000048409) #18	GCH1 (ENSDNOG00000033389) #20	WDHD1 (ENSDNOG00000006661) #21	SOCS4 (ENSDNOG00000045159) #22	MAPK1IP1L (ENSDNOG00000024969) #23	LGALS3 (ENSDNOG00000036172) #24	DLGAP5 (ENSDNOG00000003646) #25	FBXO34 (ENSDNOG00000034918) #26	ATG14 (ENSDNOG00000015108) #27	KTN1 (ENSDNOG00000011276) #28	PELI2 (ENSDNOG00000014242) #29	ENSDNOG00000048309
Sloth	MODERN SPECIES	13145																SOCS4 (ENSCHOG00000008806) #22
Afrotheria	ANCESTRAL SPECIES	6	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Tenrec	MODERN SPECIES	16462																SOCS4 (ENSETEG00000014652) #22
Afrotheria_a	ANCESTRAL SPECIES	6	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Hyrax	MODERN SPECIES	6972															ENSPCAG00000007704 #21	SOCS4 (ENSPCAG00000007816) #22
Elephant	MODERN SPECIES	602	GPR137C (ENSLAFG00000004274)	ERO1A (ENSLAFG00000004278)	PSMC6 (ENSLAFG00000014825)	STYX (ENSLAFG00000014836) #7	GNPNAT1 (ENSLAFG00000014844) #8	FERMT2 (ENSLAFG00000006531) #9	DDHD1 (ENSLAFG00000014433) #11	BMP4 (ENSLAFG00000012479) #12	CDKN3 (ENSLAFG00000014833) #13	CNIH1 (ENSLAFG00000014841) #14	GMFB (ENSLAFG00000004659) #15	CGRRF1 (ENSLAFG00000004664) #16	SAMD4A (ENSLAFG00000013245) #18	GCH1 (ENSLAFG00000002902) #20	WDHD1 (ENSLAFG00000005385) #21	SOCS4 (ENSLAFG00000011512) #22	MAPK1IP1L (ENSLAFG00000026164) #23	LGALS3 (ENSLAFG00000005163) #24	DLGAP5 (ENSLAFG00000005169) #25	FBXO34 (ENSLAFG00000015594) #26	ATG14 (ENSLAFG00000017293) #27	TBPL2 (ENSLAFG00000017299)	KTN1 (ENSLAFG00000003459) #28	PELI2 (ENSLAFG00000018284) #29	TMEM260 (ENSLAFG00000021996) #30	OTX2 (ENSLAFG00000031459) #31	ENSLAFG00000027470	EXOC5 (ENSLAFG00000012633) #32	AP5M1 (ENSLAFG00000012643) #33	NAA30 (ENSLAFG00000005556) #34	CCDC198 (ENSLAFG00000027610) #35
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000154720 #10	ENSGT00940000158830	ENSGT00390000007341.a	ENSGT00510000048466	ENSGT00390000012435	ENSGT00940000157509	ENSGT00940000157150	ENSGT00390000018516	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158072	ENSGT00940000156502	ENSGT00940000158324	ENSGT00940000157135	ENSGT00940000156593	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00730000111160	ENSGT00390000012948.b	ENSGT00390000013814	ENSGT00390000006916.d	ENSGT00940000161442	ENSGT00940000161150
Marsupialia_b	ANCESTRAL SPECIES	21	ENSGT00940000157891	ENSGT00940000154808.a.b.r	ENSGT00940000163511	ENSGT00530000063867.a.b	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00940000154071.A	ENSGT00950000183148.a	ENSGT00940000161597	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158072	ENSGT00940000156502	ENSGT00940000158324	ENSGT00940000157135	ENSGT00940000156593	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00730000111160	ENSGT00390000012948.b	ENSGT00390000013814	ENSGT00390000006916.d	ENSGT00940000161442	ENSGT00940000161150
Diprotodontia	ANCESTRAL SPECIES	34	ENSGT00940000157891	ENSGT00940000154808.a.b.r	ENSGT00940000163511	ENSGT00530000063867.a.b	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00940000154071.A	ENSGT00950000183148.a	ENSGT00940000161597	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158072	ENSGT00940000156502	ENSGT00940000158324	ENSGT00940000157135	ENSGT00940000156593	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00730000111160	ENSGT00390000012948.b	ENSGT00390000013814	ENSGT00390000006916.d	ENSGT00940000161442	ENSGT00940000161150
Wallaby	MODERN SPECIES	14098																SOCS4 (ENSMEUG00000007569) #22
Diprotodontia_a	ANCESTRAL SPECIES	33	ENSGT00940000154808.a.b.r	ENSGT00940000163511	ENSGT00530000063867.a.b.c	ENSGT00530000063867.a.b.d	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00940000154071.A	ENSGT00950000183148.a	ENSGT00940000161597	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158072	ENSGT00940000156502	ENSGT00940000158324	ENSGT00940000157135	ENSGT00940000156593	ENSGT00390000017718	ENSGT00950000182767.b.b	ENSGT00730000111160	ENSGT00390000012948.b	ENSGT00390000013814	ENSGT00390000006916.d	ENSGT00940000161442	ENSGT00940000161150
Common wonbat	MODERN SPECIES	455	HNRNPA0 (ENSVURG00010008910)	ENSVURG00010008924	ENSVURG00010008929	ENSVURG00010008937	ENSVURG00010008947	JAG2 (ENSVURG00010008995)	BRF1 (ENSVURG00010009058)	BTBD6 (ENSVURG00010009069)	TRIM9 (ENSVURG00010009088)	PYGL (ENSVURG00010009106)	ABHD12B (ENSVURG00010009131)	CGRRF1 (ENSVURG00010009164) #16	SAMD4A (ENSVURG00010009181) #18	GCH1 (ENSVURG00010009207) #20	WDHD1 (ENSVURG00010009224) #21	SOCS4 (ENSVURG00010009279) #22	MAPK1IP1L (ENSVURG00010009287) #23	LGALS3 (ENSVURG00010009294) #24	MAP4K5 (ENSVURG00010009322)	DMAC2L (ENSVURG00010009375)	SOS2 (ENSVURG00010009385)	VCPKMT (ENSVURG00010009433)	ARF6 (ENSVURG00010009451)	FBXO33 (ENSVURG00010009461)	ENSVURG00010009521	ENSVURG00010009665	PNN (ENSVURG00010009670)
koala	MODERN SPECIES	41	ENSPCIG00000034785	ENSPCIG00000023340	ENSPCIG00000031931	ENSPCIG00000014971	JAG2 (ENSPCIG00000016764)	BRF1 (ENSPCIG00000022201)	BTBD6 (ENSPCIG00000022210)	TRIM9 (ENSPCIG00000022214)	ENSPCIG00000022218	PYGL (ENSPCIG00000022223)	ABHD12B (ENSPCIG00000022241)	CGRRF1 (ENSPCIG00000029797) #16	SAMD4A (ENSPCIG00000029792) #18	GCH1 (ENSPCIG00000029790) #20	WDHD1 (ENSPCIG00000029787) #21	SOCS4 (ENSPCIG00000029786) #22	MAPK1IP1L (ENSPCIG00000029785) #23	ENSPCIG00000029784 #24	MAP4K5 (ENSPCIG00000029712)	DMAC2L (ENSPCIG00000029689)	SOS2 (ENSPCIG00000022103)	VCPKMT (ENSPCIG00000022101)	ARF6 (ENSPCIG00000022099)	ENSPCIG00000022098	FBXO33 (ENSPCIG00000022094)	ENSPCIG00000022079	PNN (ENSPCIG00000025750)	TRAPPC6B (ENSPCIG00000025752)	GEMIN2 (ENSPCIG00000025754)	SEC23A (ENSPCIG00000025756)	ENSPCIG00000033006
Tasmanian devil	MODERN SPECIES	1	KLHL3 (ENSSHAG00000001106)	ENSSHAG00000021669	ENSSHAG00000023421	ENSSHAG00000003432	ENSSHAG00000000250	BTBD6 (ENSSHAG00000004592)	BRF1 (ENSSHAG00000002347)	ENSSHAG00000003645	ENSSHAG00000001249	ENSSHAG00000001798	ENSSHAG00000010101 #16	SAMD4A (ENSSHAG00000011639) #18	ENSSHAG00000024116	GCH1 (ENSSHAG00000025814) #20	WDHD1 (ENSSHAG00000013551) #21	SOCS4 (ENSSHAG00000025701) #22	MAPK1IP1L (ENSSHAG00000024004) #23	ENSSHAG00000004257 #24	ENSSHAG00000021863	ENSSHAG00000000774	DMAC2L (ENSSHAG00000031429)	SOS2 (ENSSHAG00000003599)	ENSSHAG00000024987	ENSSHAG00000028346	ENSSHAG00000021594	ENSSHAG00000027376	ENSSHAG00000010583	ENSSHAG00000030500	GEMIN2 (ENSSHAG00000023221)	SEC23A (ENSSHAG00000002822)	SSTR1 (ENSSHAG00000003463)
Opossum	MODERN SPECIES		ENSMODG00000011376 #10	LRR1 (ENSMODG00000011383)	MGAT2 (ENSMODG00000011389)	ENSMODG00000011405	ENSMODG00000011437	KLHDC1 (ENSMODG00000011456)	KLHDC2 (ENSMODG00000011565)	NEMF (ENSMODG00000011586)	CDKN3 (ENSMODG00000011594) #13	CNIH1 (ENSMODG00000011634) #14	GMFB (ENSMODG00000011639) #15	CGRRF1 (ENSMODG00000011646) #16	SAMD4A (ENSMODG00000011669) #18	GCH1 (ENSMODG00000011684) #20	WDHD1 (ENSMODG00000011703) #21	SOCS4 (ENSMODG00000023917) #22	MAPK1IP1L (ENSMODG00000011715) #23	LGALS3 (ENSMODG00000011734) #24	MAP4K5 (ENSMODG00000011778)	DMAC2L (ENSMODG00000028477)	SOS2 (ENSMODG00000011821)	VCPKMT (ENSMODG00000036493)	ARF6 (ENSMODG00000023914)	FBXO33 (ENSMODG00000011840)	ENSMODG00000011892	PNN (ENSMODG00000011926)	ENSMODG00000036840	GEMIN2 (ENSMODG00000048816)	SEC23A (ENSMODG00000011994)	SSTR1 (ENSMODG00000012009)	ENSMODG00000012019
Sauria	ANCESTRAL SPECIES	3	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Archosauria	ANCESTRAL SPECIES	5	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Aves	ANCESTRAL SPECIES	2	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Neognathae	ANCESTRAL SPECIES	4	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Neognathae_b	ANCESTRAL SPECIES	6	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Neognathae_c	ANCESTRAL SPECIES	6	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00960000189593	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34
Golden eagle	MODERN SPECIES	11	ERO1A (ENSACCG00020004129)	PSMC6 (ENSACCG00020004137)	STYX (ENSACCG00020004148) #7	GNPNAT1 (ENSACCG00020004157) #8	FERMT2 (ENSACCG00020004185) #9	DDHD1 (ENSACCG00020004214) #11	BMP4 (ENSACCG00020004232) #12	ENSACCG00020004241	CDKN3 (ENSACCG00020004249) #13	CNIH1 (ENSACCG00020004260) #14	GMFB (ENSACCG00020004269) #15	CGRRF1 (ENSACCG00020004286) #16	SAMD4A (ENSACCG00020004297) #18	GCH1 (ENSACCG00020004311) #20	WDHD1 (ENSACCG00020004320) #21	SOCS4 (ENSACCG00020004339) #22	MAPK1IP1L (ENSACCG00020004343) #23	LGALS3 (ENSACCG00020004357) #24	ENSACCG00020004364	FBXO34 (ENSACCG00020004372) #26	ATG14 (ENSACCG00020004376) #27	TBPL2 (ENSACCG00020004388)	KTN1 (ENSACCG00020004438) #28	PELI2 (ENSACCG00020004512) #29	ENSACCG00020009462	ENSACCG00020009484	EXOC5 (ENSACCG00020009509) #32	AP5M1 (ENSACCG00020009528) #33	NAA30 (ENSACCG00020009541) #34	CCDC198 (ENSACCG00020009554) #35	SLC35F4 (ENSACCG00020009568) #36
Kakapo	MODERN SPECIES	21	GPR137C (ENSSHBG00005004735)	ERO1A (ENSSHBG00005004726)	PSMC6 (ENSSHBG00005004716)	STYX (ENSSHBG00005004709) #7	GNPNAT1 (ENSSHBG00005004705) #8	FERMT2 (ENSSHBG00005004674) #9	DDHD1 (ENSSHBG00005004639) #11	BMP4 (ENSSHBG00005004632) #12	CDKN3 (ENSSHBG00005004627) #13	CNIH1 (ENSSHBG00005004622) #14	GMFB (ENSSHBG00005004616) #15	CGRRF1 (ENSSHBG00005004610) #16	SAMD4A (ENSSHBG00005004599) #18	GCH1 (ENSSHBG00005004591) #20	WDHD1 (ENSSHBG00005004583) #21	SOCS4 (ENSSHBG00005004577) #22	MAPK1IP1L (ENSSHBG00005004570) #23	LGALS3 (ENSSHBG00005000918) #24	DLGAP5 (ENSSHBG00005005090) #25	ENSSHBG00005005086	FBXO34 (ENSSHBG00005005084) #26	ATG14 (ENSSHBG00005005079) #27	TBPL2 (ENSSHBG00005005074)	KTN1 (ENSSHBG00005005067) #28	PELI2 (ENSSHBG00005005055) #29	ENSSHBG00005005043 #30	ENSSHBG00005005038 #30	OTX2 (ENSSHBG00005005035) #31	ENSSHBG00005005030	ENSSHBG00005005027	EXOC5 (ENSSHBG00005005021) #32
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Great tit	MODERN SPECIES	25	GPR137C (ENSPMJG00000011868)	ERO1A (ENSPMJG00000011867)	PSMC6 (ENSPMJG00000011866)	STYX (ENSPMJG00000011865) #7	GNPNAT1 (ENSPMJG00000011864) #8	FERMT2 (ENSPMJG00000011863) #9	DDHD1 (ENSPMJG00000011826) #11	BMP4 (ENSPMJG00000011823) #12	CDKN3 (ENSPMJG00000011820) #13	CNIH1 (ENSPMJG00000011819) #14	GMFB (ENSPMJG00000011818) #15	CGRRF1 (ENSPMJG00000011817) #16	SAMD4A (ENSPMJG00000011816) #18	GCH1 (ENSPMJG00000011815) #20	WDHD1 (ENSPMJG00000011814) #21	SOCS4 (ENSPMJG00000011813) #22	MAPK1IP1L (ENSPMJG00000011812) #23	LGALS3 (ENSPMJG00000011811) #24	DLGAP5 (ENSPMJG00000011810) #25	FBXO34 (ENSPMJG00000011809) #26	ATG14 (ENSPMJG00000011808) #27	TBPL2 (ENSPMJG00000011807)	KTN1 (ENSPMJG00000003514) #28	ENSPMJG00000003486	PELI2 (ENSPMJG00000003476) #29	TMEM260 (ENSPMJG00000003404) #30	OTX2 (ENSPMJG00000003401) #31	EXOC5 (ENSPMJG00000003341) #32	AP5M1 (ENSPMJG00000003336) #33	NAA30 (ENSPMJG00000003327) #34	CCDC198 (ENSPMJG00000003319) #35
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Flycatcher	DUPLICATION
Flycatcher	MODERN SPECIES	24	ERO1A (ENSFALG00000003881)	PSMC6 (ENSFALG00000003873)	ENSFALG00000003847 #9	ENSFALG00000029088 #11	STYX (ENSFALG00000003863) #7	ENSFALG00000003824	ENSFALG00000025641	ENSFALG00000024086	BMP4 (ENSFALG00000027239) #12	CDKN3 (ENSFALG00000003820) #13	GMFB (ENSFALG00000024046) #15	CGRRF1 (ENSFALG00000028815) #16	SAMD4A (ENSFALG00000003787) #18	GCH1 (ENSFALG00000003779) #20	WDHD1 (ENSFALG00000003776) #21	ENSFALG00000015043 #22	MAPK1IP1L (ENSFALG00000024636) #23	LGALS3 (ENSFALG00000025755) #24	DLGAP5 (ENSFALG00000003754) #25	ENSFALG00000027075 #26	ENSFALG00000003742 #26	ATG14 (ENSFALG00000025780) #27	TBPL2 (ENSFALG00000003735)	KTN1 (ENSFALG00000003725) #28	PELI2 (ENSFALG00000003719) #29	TMEM260 (ENSFALG00000003715) #30	OTX2 (ENSFALG00000003708) #31	EXOC5 (ENSFALG00000003680) #32	AP5M1 (ENSFALG00000003651) #33	NAA30 (ENSFALG00000003631) #34	CCDC198 (ENSFALG00000003624) #35
Flycatcher	MODERN SPECIES	161																ENSFALG00000026387 #22
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00940000175234	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030.c #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666.a #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030.c #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Zebra finch	MODERN SPECIES	27	ENSTGUG00000013111	ENSTGUG00000013108	PSMC6 (ENSTGUG00000013103)	ENSTGUG00000019179 #7	ENSTGUG00000013101 #8	ENSTGUG00000013098 #9	ENSTGUG00000023770	ENSTGUG00000013097 #11	BMP4 (ENSTGUG00000013095) #12	CDKN3 (ENSTGUG00000029019) #13	CNIH1 (ENSTGUG00000013093) #14	CGRRF1 (ENSTGUG00000013088) #16	SAMD4A (ENSTGUG00000013086) #18	GCH1 (ENSTGUG00000013083) #20	WDHD1 (ENSTGUG00000013080) #21	SOCS4 (ENSTGUG00000013079) #22	MAPK1IP1L (ENSTGUG00000013078) #23	LGALS3 (ENSTGUG00000013077) #24	DLGAP5 (ENSTGUG00000013075) #25	FBXO34 (ENSTGUG00000013074) #26	ATG14 (ENSTGUG00000013072) #27	TBPL2 (ENSTGUG00000013070)	KTN1 (ENSTGUG00000013063) #28	PELI2 (ENSTGUG00000026455) #29	TMEM260 (ENSTGUG00000013057) #30	OTX2 (ENSTGUG00000013055) #31	EXOC5 (ENSTGUG00000013051) #32	AP5M1 (ENSTGUG00000013050) #33	NAA30 (ENSTGUG00000026471) #34	CCDC198 (ENSTGUG00000020389) #35	SLC35F4 (ENSTGUG00000013048) #36
Common canary	MODERN SPECIES	3	ENSSCAG00000002176	ENSSCAG00000002184	FKBP3 (ENSSCAG00000002186)	PRPF39 (ENSSCAG00000002190)	TOGARAM1 (ENSSCAG00000002210)	KLHL28 (ENSSCAG00000002305)	GMFB (ENSSCAG00000002320) #15	CNIH1 (ENSSCAG00000002324) #14	CDKN3 (ENSSCAG00000002328) #13	BMP4 (ENSSCAG00000002351) #12	ENSSCAG00000002356	CGRRF1 (ENSSCAG00000002374) #16	SAMD4A (ENSSCAG00000002382) #18	GCH1 (ENSSCAG00000002400) #20	WDHD1 (ENSSCAG00000002410) #21	SOCS4 (ENSSCAG00000002417) #22	MAPK1IP1L (ENSSCAG00000002421) #23	LGALS3 (ENSSCAG00000002431) #24	DLGAP5 (ENSSCAG00000002436) #25	FBXO34 (ENSSCAG00000002446) #26	ATG14 (ENSSCAG00000002454) #27	TBPL2 (ENSSCAG00000002474)	KTN1 (ENSSCAG00000002797) #28	PCNX4 (ENSSCAG00000005247)	DHRS7 (ENSSCAG00000005253)	PPM1A (ENSSCAG00000005263)	PELI2 (ENSSCAG00000005266) #29	TMEM260 (ENSSCAG00000005274) #30	OTX2 (ENSSCAG00000005303) #31	EXOC5 (ENSSCAG00000005307) #32	AP5M1 (ENSSCAG00000005309) #33
Medium ground finch	MODERN SPECIES	6	ERO1A (ENSGFOG00000003383)	PSMC6 (ENSGFOG00000003335)	STYX (ENSGFOG00000003298) #7	GNPNAT1 (ENSGFOG00000003285) #8	FERMT2 (ENSGFOG00000003193) #9	DDHD1 (ENSGFOG00000002638) #11	BMP4 (ENSGFOG00000002591) #12	CDKN3 (ENSGFOG00000002572) #13	CNIH1 (ENSGFOG00000002556) #14	ENSGFOG00000002539	CGRRF1 (ENSGFOG00000002523) #16	SAMD4A (ENSGFOG00000002497) #18	GCH1 (ENSGFOG00000002469) #20	ENSGFOG00000002456 #21	ENSGFOG00000002385 #21	SOCS4 (ENSGFOG00000002369) #22	MAPK1IP1L (ENSGFOG00000002361) #23	LGALS3 (ENSGFOG00000002340) #24	DLGAP5 (ENSGFOG00000002309) #25	FBXO34 (ENSGFOG00000002238) #26	ATG14 (ENSGFOG00000002212) #27	TBPL2 (ENSGFOG00000002196)	KTN1 (ENSGFOG00000001982) #28	PELI2 (ENSGFOG00000001948) #29	TMEM260 (ENSGFOG00000001917) #30	OTX2 (ENSGFOG00000001897) #31	EXOC5 (ENSGFOG00000001880) #32	AP5M1 (ENSGFOG00000001815) #33	NAA30 (ENSGFOG00000001774) #34	SLC35F4 (ENSGFOG00000001755) #36	ARMH4 (ENSGFOG00000001734)
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Anatidae	ANCESTRAL SPECIES	9	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000008727.a.b #36	ENSGT00390000012816
Pink-footed goose	MODERN SPECIES	56	TXNDC16 (ENSABRG00000010525)	GPR137C (ENSABRG00000010546)	ERO1A (ENSABRG00000010552)	PSMC6 (ENSABRG00000010563)	STYX (ENSABRG00000010577) #7	GNPNAT1 (ENSABRG00000010594) #8	FERMT2 (ENSABRG00000010735) #9	DDHD1 (ENSABRG00000012748) #11	BMP4 (ENSABRG00000012787) #12	CDKN3 (ENSABRG00000012797) #13	CNIH1 (ENSABRG00000012802) #14	CGRRF1 (ENSABRG00000012818) #16	SAMD4A (ENSABRG00000012842) #18	GCH1 (ENSABRG00000012851) #20	WDHD1 (ENSABRG00000012864) #21	SOCS4 (ENSABRG00000012883) #22	MAPK1IP1L (ENSABRG00000012888) #23	LGALS3 (ENSABRG00000012894) #24	DLGAP5 (ENSABRG00000012898) #25	FBXO34 (ENSABRG00000012903) #26	ATG14 (ENSABRG00000012904) #27	TBPL2 (ENSABRG00000012912)	KTN1 (ENSABRG00000012924) #28	PELI2 (ENSABRG00000013012) #29	TMEM260 (ENSABRG00000013023) #30	OTX2 (ENSABRG00000013040) #31	EXOC5 (ENSABRG00000013062) #32	AP5M1 (ENSABRG00000013069) #33	NAA30 (ENSABRG00000013081) #34	SLC35F4 (ENSABRG00000013099) #36	ARMH4 (ENSABRG00000013125)
Duck	MODERN SPECIES	23	ERO1A (ENSAPLG00000001303)	PSMC6 (ENSAPLG00000002349)	STYX (ENSAPLG00000002535) #7	GNPNAT1 (ENSAPLG00000002584) #8	ENSAPLG00000002657 #9	ENSAPLG00000019923 #9	ENSAPLG00000003177 #11	BMP4 (ENSAPLG00000028313) #12	CDKN3 (ENSAPLG00000004902) #13	CNIH1 (ENSAPLG00000004994) #14	GMFB (ENSAPLG00000023672) #15	CGRRF1 (ENSAPLG00000005044) #16	SAMD4A (ENSAPLG00000005142) #18	GCH1 (ENSAPLG00000005356) #20	ENSAPLG00000022237 #21	SOCS4 (ENSAPLG00000011447) #22	MAPK1IP1L (ENSAPLG00000006181) #23	LGALS3 (ENSAPLG00000006188) #24	DLGAP5 (ENSAPLG00000006300) #25	FBXO34 (ENSAPLG00000026413) #26	ATG14 (ENSAPLG00000006865) #27	TBPL2 (ENSAPLG00000006951)	KTN1 (ENSAPLG00000012978) #28	PELI2 (ENSAPLG00000008440) #29	TMEM260 (ENSAPLG00000008287) #30	OTX2 (ENSAPLG00000030438) #31	EXOC5 (ENSAPLG00000002629) #32	AP5M1 (ENSAPLG00000001799) #33	NAA30 (ENSAPLG00000001619) #34	SLC35F4 (ENSAPLG00000001042) #36	ARMH4 (ENSAPLG00000000800)
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00940000157150	ENSGT00940000157509	ENSGT00390000012435	ENSGT00510000048466	ENSGT00390000007341.a	ENSGT00940000158830	ENSGT00940000154720 #10	ENSGT00940000155369.A	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00390000018516	ENSGT00940000157150	ENSGT00940000157509	ENSGT00390000012435	ENSGT00510000048466	ENSGT00390000007341.a	ENSGT00940000158830	ENSGT00940000154720 #10	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Chicken	MODERN SPECIES	34	ENSGALG00010018942	ENSGALG00010020049	ENSGALG00010020043	ENSGALG00010020040	ENSGALG00010020034	ENSGALG00010020031	ENSGALG00010018938	ENSGALG00010020024	CDKN3 (ENSGALG00010018932) #13	CNIH1 (ENSGALG00010018911) #14	GMFB (ENSGALG00010018876) #15	CGRRF1 (ENSGALG00010018847) #16	SAMD4A (ENSGALG00010018834) #18	GCH1 (ENSGALG00010018806) #20	WDHD1 (ENSGALG00010018780) #21	SOCS4 (ENSGALG00010018750) #22	MAPK1IP1L (ENSGALG00010018619) #23	LGALS3 (ENSGALG00010018593) #24	DLGAP5 (ENSGALG00010018564) #25	FBXO34 (ENSGALG00010018551) #26	ATG14 (ENSGALG00010018501) #27	TBPL2 (ENSGALG00010018499)	KTN1 (ENSGALG00010018462) #28	PELI2 (ENSGALG00010018415) #29	TMEM260 (ENSGALG00010018406) #30	OTX2 (ENSGALG00010019688) #31	EXOC5 (ENSGALG00010017252) #32	AP5M1 (ENSGALG00010017201) #33	NAA30 (ENSGALG00010017185) #34	CCDC198 (ENSGALG00010017169) #35	SLC35F4 (ENSGALG00010017153) #36
Turkey	MODERN SPECIES	25	AUP1 (ENSMGAG00000010446)	ENSMGAG00000009432	DQX1 (ENSMGAG00000006485)	ENSMGAG00000022485	ENSMGAG00000022878	ENSMGAG00000013700	ENSMGAG00000013703	ENSMGAG00000019820	CDKN3 (ENSMGAG00000013696) #13	CNIH1 (ENSMGAG00000013694) #14	GMFB (ENSMGAG00000022057) #15	CGRRF1 (ENSMGAG00000013691) #16	SAMD4A (ENSMGAG00000013686) #18	GCH1 (ENSMGAG00000013681) #20	WDHD1 (ENSMGAG00000013676) #21	SOCS4 (ENSMGAG00000015396) #22	MAPK1IP1L (ENSMGAG00000013675) #23	LGALS3 (ENSMGAG00000013646) #24	DLGAP5 (ENSMGAG00000013648) #25	FBXO34 (ENSMGAG00000013652) #26	ATG14 (ENSMGAG00000013653) #27	TBPL2 (ENSMGAG00000013657)	KTN1 (ENSMGAG00000013659) #28	PELI2 (ENSMGAG00000013672) #29	TMEM260 (ENSMGAG00000013639) #30	OTX2 (ENSMGAG00000022347) #31	EXOC5 (ENSMGAG00000013632) #32	AP5M1 (ENSMGAG00000013628) #33	NAA30 (ENSMGAG00000013627) #34	CCDC198 (ENSMGAG00000013624) #35	SLC35F4 (ENSMGAG00000013622) #36
Japanese quail	MODERN SPECIES	23	MGAT2 (ENSCJPG00005006389)	ENSCJPG00005006388	ENSCJPG00005006387	ENSCJPG00005006384	ENSCJPG00005006380	RPS29 (ENSCJPG00005006375) #10	ENSCJPG00005006335	MDGA2 (ENSCJPG00005006314)	CDKN3 (ENSCJPG00005006275) #13	CNIH1 (ENSCJPG00005006270) #14	GMFB (ENSCJPG00005006265) #15	CGRRF1 (ENSCJPG00005006258) #16	SAMD4A (ENSCJPG00005006252) #18	GCH1 (ENSCJPG00005006250) #20	WDHD1 (ENSCJPG00005006242) #21	SOCS4 (ENSCJPG00005006240) #22	MAPK1IP1L (ENSCJPG00005006239) #23	LGALS3 (ENSCJPG00005006236) #24	DLGAP5 (ENSCJPG00005006235) #25	FBXO34 (ENSCJPG00005006231) #26	ATG14 (ENSCJPG00005006230) #27	TBPL2 (ENSCJPG00005006225)	KTN1 (ENSCJPG00005006192) #28	PELI2 (ENSCJPG00005006186) #29	TMEM260 (ENSCJPG00005006182) #30	OTX2 (ENSCJPG00005006178) #31	EXOC5 (ENSCJPG00005006164) #32	AP5M1 (ENSCJPG00005006162) #33	NAA30 (ENSCJPG00005006116) #34	ENSCJPG00005006115	SLC35F4 (ENSCJPG00005006099) #36
African ostrich	MODERN SPECIES	471								DDHD1 (ENSSCUG00000008002) #11	BMP4 (ENSSCUG00000008018) #12	ENSSCUG00000008020	GMFB (ENSSCUG00000008021) #15	CGRRF1 (ENSSCUG00000008022) #16	SAMD4A (ENSSCUG00000008023) #18	GCH1 (ENSSCUG00000008024) #20	WDHD1 (ENSSCUG00000008025) #21	SOCS4 (ENSSCUG00000008027) #22	MAPK1IP1L (ENSSCUG00000008029) #23	LGALS3 (ENSSCUG00000008030) #24	DLGAP5 (ENSSCUG00000008031) #25	FBXO34 (ENSSCUG00000008033) #26	ATG14 (ENSSCUG00000008034) #27	TBPL2 (ENSSCUG00000008037)	KTN1 (ENSSCUG00000008043) #28	PELI2 (ENSSCUG00000008055) #29	TMEM260 (ENSSCUG00000008059) #30	ENSSCUG00000008061	OTX2 (ENSSCUG00000008062) #31	EXOC5 (ENSSCUG00000008066) #32	AP5M1 (ENSSCUG00000008079) #33	NAA30 (ENSSCUG00000008082) #34	ENSSCUG00000008083 #35
Australian saltwater crocodile	MODERN SPECIES	64	KLHDC1 (ENSCPRG00005018734)	ENSCPRG00005018733	POLE2 (ENSCPRG00005018730)	ENSCPRG00005018729	LRR1 (ENSCPRG00005018725)	ENSCPRG00005018724	ENSCPRG00005018721	ENSCPRG00005018720	CNIH1 (ENSCPRG00005018718) #14	ENSCPRG00005018715	GMFB (ENSCPRG00005018713) #15	CGRRF1 (ENSCPRG00005018711) #16	SAMD4A (ENSCPRG00005018693) #18	GCH1 (ENSCPRG00005018685) #20	WDHD1 (ENSCPRG00005018667) #21	SOCS4 (ENSCPRG00005018664) #22	ENSCPRG00005018662	GNG2 (ENSCPRG00005018659)	FRMD6 (ENSCPRG00005018656)	TMX1 (ENSCPRG00005018652)	TRIM9 (ENSCPRG00005018650)	PYGL (ENSCPRG00005018648)	ENSCPRG00005018643	NIN (ENSCPRG00005018527)	SAV1 (ENSCPRG00005018456)	ATL1 (ENSCPRG00005018434)	MAP4K5 (ENSCPRG00005018249)	CDKL1 (ENSCPRG00005018173)	DMAC2L (ENSCPRG00005018171)	L2HGDH (ENSCPRG00005018169)	SOS2 (ENSCPRG00005018117)
Cryptodira	ANCESTRAL SPECIES	38	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717.s #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Emydidae	ANCESTRAL SPECIES	43	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717.s #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224.t #24	ENSGT00940000158652 #25	ENSGT00940000157224.s.b #24	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34
Three-toed box turtle	MODERN SPECIES	87	TXNDC16 (ENSTMTG00000020611)	GPR137C (ENSTMTG00000020606)	ERO1A (ENSTMTG00000020584)	PSMC6 (ENSTMTG00000020575)	STYX (ENSTMTG00000020562) #7	GNPNAT1 (ENSTMTG00000020556) #8	FERMT2 (ENSTMTG00000020545) #9	DDHD1 (ENSTMTG00000020517) #11	BMP4 (ENSTMTG00000020514) #12	CDKN3 (ENSTMTG00000020488) #13	CNIH1 (ENSTMTG00000020481) #14	GMFB (ENSTMTG00000020474) #15	SAMD4A (ENSTMTG00000020451) #18	GCH1 (ENSTMTG00000020438) #20	WDHD1 (ENSTMTG00000020389) #21	SOCS4 (ENSTMTG00000020382) #22	MAPK1IP1L (ENSTMTG00000020377) #23	ENSTMTG00000020371 #24	ENSTMTG00000020361	FBXO34 (ENSTMTG00000020353) #26	ATG14 (ENSTMTG00000020342) #27	TBPL2 (ENSTMTG00000020329)	KTN1 (ENSTMTG00000020234) #28	PELI2 (ENSTMTG00000020222) #29	ENSTMTG00000020215	TMEM260 (ENSTMTG00000020185) #30	OTX2 (ENSTMTG00000020173) #31	EXOC5 (ENSTMTG00000020151) #32	AP5M1 (ENSTMTG00000020142) #33	NAA30 (ENSTMTG00000020135) #34	CCDC198 (ENSTMTG00000020126) #35
painted turtle	MODERN SPECIES	756							BMP4 (ENSCPBG00000020060) #12	ENSCPBG00000020061 #13	ENSCPBG00000020062 #13	CNIH1 (ENSCPBG00000020063) #14	GMFB (ENSCPBG00000020064) #15	CGRRF1 (ENSCPBG00000020065) #16	SAMD4A (ENSCPBG00000020066) #18	GCH1 (ENSCPBG00000020069) #20	WDHD1 (ENSCPBG00000020071) #21	SOCS4 (ENSCPBG00000020073) #22	MAPK1IP1L (ENSCPBG00000020075) #23	ENSCPBG00000020077 #24	DLGAP5 (ENSCPBG00000020080) #25	ENSCPBG00000020083	FBXO34 (ENSCPBG00000020084) #26	ATG14 (ENSCPBG00000020090) #27	TBPL2 (ENSCPBG00000020136)	KTN1 (ENSCPBG00000020358) #28	PELI2 (ENSCPBG00000024788) #29	TMEM260 (ENSCPBG00000024790) #30	OTX2 (ENSCPBG00000024794) #31	EXOC5 (ENSCPBG00000024798) #32	AP5M1 (ENSCPBG00000024799) #33	NAA30 (ENSCPBG00000024800) #34	CCDC198 (ENSCPBG00000024802) #35
Testudinidae	ANCESTRAL SPECIES	43	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717.s #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36
Goode s thornscrub tortoise	MODERN SPECIES	18	ERO1A (ENSGEVG00005001456)	PSMC6 (ENSGEVG00005001486)	STYX (ENSGEVG00005001511) #7	GNPNAT1 (ENSGEVG00005001543) #8	FERMT2 (ENSGEVG00005001585) #9	DDHD1 (ENSGEVG00005001792) #11	BMP4 (ENSGEVG00005002047) #12	ENSGEVG00005002054 #13	ENSGEVG00005002069 #13	CNIH1 (ENSGEVG00005002078) #14	GMFB (ENSGEVG00005002089) #15	CGRRF1 (ENSGEVG00005002112) #16	SAMD4A (ENSGEVG00005002159) #18	GCH1 (ENSGEVG00005002236) #20	WDHD1 (ENSGEVG00005002254) #21	SOCS4 (ENSGEVG00005002275) #22	MAPK1IP1L (ENSGEVG00005002278) #23	LGALS3 (ENSGEVG00005002286) #24	ENSGEVG00005002302	FBXO34 (ENSGEVG00005002316) #26	ATG14 (ENSGEVG00005002336) #27	TBPL2 (ENSGEVG00005002353)	KTN1 (ENSGEVG00005002428) #28	PELI2 (ENSGEVG00005002542) #29	ENSGEVG00005002547	TMEM260 (ENSGEVG00005002559) #30	OTX2 (ENSGEVG00005002569) #31	EXOC5 (ENSGEVG00005002581) #32	AP5M1 (ENSGEVG00005002607) #33	NAA30 (ENSGEVG00005002629) #34	CCDC198 (ENSGEVG00005002639) #35
Abingdon island giant tortoise	MODERN SPECIES	2761													SAMD4A (ENSCABG00000018382) #18	GCH1 (ENSCABG00000018440) #20	WDHD1 (ENSCABG00000018449) #21	SOCS4 (ENSCABG00000018454) #22	MAPK1IP1L (ENSCABG00000018456) #23	LGALS3 (ENSCABG00000018457) #24	DLGAP5 (ENSCABG00000018461) #25	FBXO34 (ENSCABG00000018462) #26	ATG14 (ENSCABG00000018463) #27	TBPL2 (ENSCABG00000018464)	KTN1 (ENSCABG00000018516) #28	ENSCABG00000019572 #29
Chinese turtle	MODERN SPECIES	849														GCH1 (ENSPSIG00000012776) #20	WDHD1 (ENSPSIG00000011635) #21	SOCS4 (ENSPSIG00000002029) #22	MAPK1IP1L (ENSPSIG00000011538) #23	LGALS3 (ENSPSIG00000011319) #24	DLGAP5 (ENSPSIG00000011041) #25	FBXO34 (ENSPSIG00000010904) #26	ATG14 (ENSPSIG00000010882) #27	TBPL2 (ENSPSIG00000010865)	KTN1 (ENSPSIG00000010234) #28	PELI2 (ENSPSIG00000009391) #29	TMEM260 (ENSPSIG00000007098) #30	OTX2 (ENSPSIG00000005699) #31
Lepidosauria	ANCESTRAL SPECIES	32	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35
Episquamata	ANCESTRAL SPECIES		ENSGT00390000006080	ENSGT01050000244902.b.c.a	ENSGT01050000244902.b.c.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT01100000263497.C	ENSGT00940000155517	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00550000075090	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000008727.a.b #36	ENSGT00390000001071 #35	ENSGT00390000005665 #34	ENSGT00390000006191 #33	ENSGT00390000012837 #32	ENSGT00940000155014 #31
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00390000006080	ENSGT01050000244902.b.c.a	ENSGT01050000244902.b.c.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT01100000263497.C	ENSGT00940000155517	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT01010000222666	ENSGT00550000075090	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000008727.a.b #36	ENSGT00990000211542	ENSGT00390000001071 #35	ENSGT00390000005665 #34	ENSGT00390000006191 #33
Elapidae	ANCESTRAL SPECIES	3	ENSGT00390000006080	ENSGT01050000244902.b.c.a	ENSGT01050000244902.b.c.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT01100000263497.C	ENSGT00940000155517	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00550000075090	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00910000144250	ENSGT00390000008727.a.b #36	ENSGT00990000211542	ENSGT00390000001071 #35	ENSGT00390000005665 #34	ENSGT00390000006191 #33	ENSGT00390000012837 #32	ENSGT00940000155014 #31
Elapidae_a	ANCESTRAL SPECIES	10	ENSGT00390000006080	ENSGT01050000244902.b.c.a	ENSGT01050000244902.b.c.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT01100000263497.C	ENSGT00940000155517	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00550000075090	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00910000144250	ENSGT00390000008727.a.b #36	ENSGT00990000211542	ENSGT00390000005665 #34	ENSGT00390000006191 #33	ENSGT00390000012837 #32	ENSGT00940000155014 #31	ENSGT00390000013544 #30
Acanthophiinae	ANCESTRAL SPECIES	13	ENSGT00390000006080	ENSGT01050000244902.b.c.a	ENSGT01050000244902.b.c.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT01100000263497.C	ENSGT00940000155517	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT01010000222666	ENSGT00550000075090	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00910000144250	ENSGT00390000008727.a.b #36	ENSGT00990000211542	ENSGT00390000005665 #34	ENSGT00390000006191 #33	ENSGT00390000012837 #32	ENSGT00940000155014 #31	ENSGT00390000013544 #30
Mainland tiger snake	MODERN SPECIES	31			ENSNSUG00000019326	RTRAF (ENSNSUG00000019325)	GNG2 (ENSNSUG00000019324)	FRMD6 (ENSNSUG00000019323)	BMP4 (ENSNSUG00000019322) #12	CDKN3 (ENSNSUG00000019312) #13	CNIH1 (ENSNSUG00000019310) #14	GMFB (ENSNSUG00000019309) #15	ENSNSUG00000019308 #16	ENSNSUG00000019307 #16	SAMD4A (ENSNSUG00000019301) #18	GCH1 (ENSNSUG00000019299) #20	WDHD1 (ENSNSUG00000019298) #21	SOCS4 (ENSNSUG00000019297) #22	MAPK1IP1L (ENSNSUG00000019296) #23	LGALS3 (ENSNSUG00000019295) #24	ENSNSUG00000019293	IMP3 (ENSNSUG00000019292)	FBXO34 (ENSNSUG00000019291) #26	ATG14 (ENSNSUG00000019290) #27	TBPL2 (ENSNSUG00000019289)	ACTR10 (ENSNSUG00000019288)	SLC35F4 (ENSNSUG00000019287) #36	ENSNSUG00000019286	NAA30 (ENSNSUG00000019285) #34	AP5M1 (ENSNSUG00000019284) #33	EXOC5 (ENSNSUG00000019283) #32	OTX2 (ENSNSUG00000019281) #31	ENSNSUG00000019279 #30
Eastern brown snake	MODERN SPECIES	10	TXNDC16 (ENSPTXG00000002048)	PTGER2 (ENSPTXG00000002045)	NID2 (ENSPTXG00000001559)	RTRAF (ENSPTXG00000001521)	GNG2 (ENSPTXG00000001518)	FRMD6 (ENSPTXG00000001512)	ENSPTXG00000001506	BMP4 (ENSPTXG00000001504) #12	CDKN3 (ENSPTXG00000001440) #13	CNIH1 (ENSPTXG00000001436) #14	GMFB (ENSPTXG00000001434) #15	CGRRF1 (ENSPTXG00000001432) #16	SAMD4A (ENSPTXG00000001429) #18	GCH1 (ENSPTXG00000001425) #20	WDHD1 (ENSPTXG00000001421) #21	SOCS4 (ENSPTXG00000001419) #22	MAPK1IP1L (ENSPTXG00000001417) #23	LGALS3 (ENSPTXG00000001416) #24	ENSPTXG00000001415	IMP3 (ENSPTXG00000001414)	FBXO34 (ENSPTXG00000001413) #26	ATG14 (ENSPTXG00000001412) #27	TBPL2 (ENSPTXG00000001408)	ACTR10 (ENSPTXG00000001405)	SLC35F4 (ENSPTXG00000001402) #36	ENSPTXG00000001400	NAA30 (ENSPTXG00000001399) #34	AP5M1 (ENSPTXG00000001397) #33	EXOC5 (ENSPTXG00000001393) #32	OTX2 (ENSPTXG00000001391) #31	TMEM260 (ENSPTXG00000001385) #30
Blue-lipped sea krait	MODERN SPECIES	7669																SOCS4 (ENSLLTG00000014028) #22
Indian cobra	MODERN SPECIES		TXNDC16 (ENSNNAG00000006277)	PTGER2 (ENSNNAG00000006253)	PTGDR (ENSNNAG00000006153)	NID2 (ENSNNAG00000006085)	RTRAF (ENSNNAG00000006060)	GNG2 (ENSNNAG00000006049)	FRMD6 (ENSNNAG00000006039)	BMP4 (ENSNNAG00000006026) #12	CDKN3 (ENSNNAG00000005708) #13	CNIH1 (ENSNNAG00000005663) #14	GMFB (ENSNNAG00000005652) #15	CGRRF1 (ENSNNAG00000005631) #16	SAMD4A (ENSNNAG00000005541) #18	GCH1 (ENSNNAG00000005510) #20	ENSNNAG00000005499 #21	SOCS4 (ENSNNAG00000005497) #22	MAPK1IP1L (ENSNNAG00000005480) #23	LGALS3 (ENSNNAG00000005456) #24	DLGAP5 (ENSNNAG00000005381) #25	IMP3 (ENSNNAG00000005373)	FBXO34 (ENSNNAG00000005364) #26	ATG14 (ENSNNAG00000005346) #27	TBPL2 (ENSNNAG00000005302)	ACTR10 (ENSNNAG00000005270)	SLC35F4 (ENSNNAG00000005228) #36	ENSNNAG00000005220	CCDC198 (ENSNNAG00000005201) #35	NAA30 (ENSNNAG00000005185) #34	AP5M1 (ENSNNAG00000005163) #33	EXOC5 (ENSNNAG00000005063) #32	OTX2 (ENSNNAG00000005044) #31
Lizard	MODERN SPECIES	939														ENSACAG00000038094	WDHD1 (ENSACAG00000016303) #21	SOCS4 (ENSACAG00000016300) #22	MAPK1IP1L (ENSACAG00000016297) #23	LGALS3 (ENSACAG00000016274) #24	DLGAP5 (ENSACAG00000016265) #25	ENSACAG00000034626	ENSACAG00000016259	FBXO34 (ENSACAG00000045293) #26	ATG14 (ENSACAG00000016240) #27	ENSACAG00000041235	ENSACAG00000000993	ACTR10 (ENSACAG00000000833)	ARMH4 (ENSACAG00000033666)	SLC35F4 (ENSACAG00000000761) #36	ENSACAG00000040824	ENSACAG00000036921	NAA30 (ENSACAG00000000751) #34
Laterata	ANCESTRAL SPECIES	2	ENSGT00390000006080	ENSGT01050000244902.b.c.a	ENSGT01050000244902.b.c.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT01100000263497.C	ENSGT00940000155517	ENSGT00940000159502 #12	ENSGT00390000004717 #13	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340 #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00550000075090	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000159561	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000008727.a.b #36	ENSGT00390000001071 #35	ENSGT00390000005665 #34	ENSGT00390000006191 #33	ENSGT00390000012837 #32	ENSGT00940000155014 #31
Common wall lizard	MODERN SPECIES		PTGER2 (ENSPMRG00000001356)	ENSPMRG00000001425	ENSPMRG00000001463	RTRAF (ENSPMRG00000001483)	GNG2 (ENSPMRG00000001495)	FRMD6 (ENSPMRG00000001505)	ENSPMRG00000001531	BMP4 (ENSPMRG00000001548) #12	CDKN3 (ENSPMRG00000001555) #13	GMFB (ENSPMRG00000001589) #15	CGRRF1 (ENSPMRG00000001651) #16	SAMD4A (ENSPMRG00000001661) #18	GCH1 (ENSPMRG00000001685) #20	ENSPMRG00000001708 #24	WDHD1 (ENSPMRG00000001761) #21	SOCS4 (ENSPMRG00000001806) #22	MAPK1IP1L (ENSPMRG00000001811) #23	ENSPMRG00000001824 #24	DLGAP5 (ENSPMRG00000001830) #25	IMP3 (ENSPMRG00000001849)	FBXO34 (ENSPMRG00000001854) #26	ATG14 (ENSPMRG00000001859) #27	TBPL2 (ENSPMRG00000001864)	ACTR10 (ENSPMRG00000001877)	SLC35F4 (ENSPMRG00000001896) #36	CCDC198 (ENSPMRG00000001903) #35	NAA30 (ENSPMRG00000001913) #34	ENSPMRG00000001917	AP5M1 (ENSPMRG00000001923) #33	EXOC5 (ENSPMRG00000001933) #32	TMEM260 (ENSPMRG00000002591) #30
Anura	ANCESTRAL SPECIES	139				ENSGT01020000230346.A	ENSGT00940000154859 #7	ENSGT00390000008666 #8	ENSGT00390000013444.a.a #9	ENSGT00940000156065 #11	ENSGT00940000159502 #12	ENSGT00950000182834.A.a.a #14	ENSGT00390000008920.c.a #15	ENSGT00390000004542 #16	ENSGT00940000157933 #18	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00390000007753.b	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a	ENSGT01050000244902.b.c.b	ENSGT00940000157901	ENSGT00390000005163	ENSGT01100000263497.C	ENSGT00940000155517	ENSGT00940000155959	ENSGT00940000154071.A	ENSGT00950000183148.a	ENSGT00940000165086	ENSGT00660000095541.a.b
Frog	MODERN SPECIES	8	psmc6 (ENSXETG00000008628)	styx (ENSXETG00000025514) #7	gnpnat1 (ENSXETG00000025513) #8	fermt2 (ENSXETG00000030567) #9	ddhd1 (ENSXETG00000038294) #11	bmp4 (ENSXETG00000008620) #12	cnih1 (ENSXETG00000012227) #14	ENSXETG00000038676	ENSXETG00000048058	gmfb (ENSXETG00000012224) #15	cgrrf1 (ENSXETG00000012221) #16	ENSXETG00000036691	samd4a (ENSXETG00000012217) #18	gch1 (ENSXETG00000012214) #20	wdhd1 (ENSXETG00000012210) #21	socs4 (ENSXETG00000048277) #22	mgc89226 (ENSXETG00000012208)	ENSXETG00000048019	ENSXETG00000048999	ero1a (ENSXETG00000012205)	gpr137c (ENSXETG00000012204)	txndc16 (ENSXETG00000012203)	ptger2 (ENSXETG00000012202)	PTGDR (ENSXETG00000031128)	ENSXETG00000044451	nid2 (ENSXETG00000012198)	rtraf (ENSXETG00000046090)	ENSXETG00000048735	gng2 (ENSXETG00000016492)	frmd6 (ENSXETG00000016491)	tmx1 (ENSXETG00000016489)
Leishan spiny toad	MODERN SPECIES	4	ENSLLEG00000015158	MRPL17 (ENSLLEG00000015487)	ENSLLEG00000015701	ENSLLEG00000015879	COQ6 (ENSLLEG00000015946)	ENTPD5 (ENSLLEG00000016244)	ALDH6A1 (ENSLLEG00000016549)	LIN52 (ENSLLEG00000019127)	VSX2 (ENSLLEG00000019267)	ENSLLEG00000019300	ISCA2 (ENSLLEG00000019338)	ABCD4 (ENSLLEG00000019459)	ENSLLEG00000019633 #20	ENSLLEG00000019733	WDHD1 (ENSLLEG00000019791) #21	SOCS4 (ENSLLEG00000020658) #22	ENSLLEG00000020680	ENSLLEG00000020708	SAMD4A (ENSLLEG00000020761) #18	ENSLLEG00000021257	PTGER2 (ENSLLEG00000021267)	FANCM (ENSLLEG00000021315)	ENSLLEG00000021492	FKBP3 (ENSLLEG00000021542)	ENSLLEG00000021679	PRPF39 (ENSLLEG00000021744)	C14orf28 (ENSLLEG00000021858)	KLHL28 (ENSLLEG00000022042)	ENSLLEG00000022147	ENSLLEG00000022318	ENSLLEG00000022366