Murinae	ANCESTRAL SPECIES	16	ENSGT00940000153986.a #7	ENSGT00390000007753.b #8	ENSGT01020000230346.A #9	ENSGT00940000154859 #10	ENSGT00390000008666 #11	ENSGT00390000013444.a.a #12	ENSGT00940000156065 #13	ENSGT00940000159502 #14	ENSGT00390000004717 #15	ENSGT00950000182834.A.a.a #16	ENSGT00390000008920.c.a #17	ENSGT00390000004542 #18	ENSGT00940000157933 #19	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.g #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36	ENSGT00390000012816 #37
Mus	ANCESTRAL SPECIES	8	ENSGT00390000007753.b #8	ENSGT01020000230346.A #9	ENSGT00940000154859 #10	ENSGT00390000008666 #11	ENSGT00390000013444.a.a #12	ENSGT00940000156065 #13	ENSGT00860000135823	ENSGT00940000159502 #14	ENSGT00390000004717 #15	ENSGT00950000182834.A.a.a #16	ENSGT00390000008920.c.a #17	ENSGT00390000004542 #18	ENSGT00940000157933 #19	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.g #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36	ENSGT00390000012816 #37
Mus_A	ANCESTRAL SPECIES	12	ENSGT00390000007753.b #8	ENSGT01020000230346.A #9	ENSGT00940000154859 #10	ENSGT00390000008666 #11	ENSGT00390000013444.a.a #12	ENSGT00940000156065 #13	ENSGT00860000135823	ENSGT00940000159502 #14	ENSGT00390000004717 #15	ENSGT00950000182834.A.a.a #16	ENSGT00390000008920.c.a #17	ENSGT00390000004542 #18	ENSGT00940000157933 #19	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.g #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b #26	ENSGT00390000011854 #27	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36	ENSGT00390000012816 #37
Mus_B	ANCESTRAL SPECIES	11	ENSGT00390000007753.b #8	ENSGT01020000230346.A #9	ENSGT00940000154859 #10	ENSGT00390000008666 #11	ENSGT00390000013444.a.a #12	ENSGT00940000156065 #13	ENSGT00860000135823	ENSGT00940000159502 #14	ENSGT00390000004717 #15	ENSGT00950000182834.A.a.a #16	ENSGT00390000008920.c.a #17	ENSGT00390000004542 #18	ENSGT00940000157933 #19	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.g #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b.e #26	ENSGT00390000011854 #27	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36	ENSGT00390000012816 #37
Mouse	MODERN SPECIES	5	Gpr137c (ENSMUSG00000049092) #7	Ero1a (ENSMUSG00000021831) #8	Psmc6 (ENSMUSG00000021832) #9	Styx (ENSMUSG00000053205) #10	Gnpnat1 (ENSMUSG00000037722) #11	Fermt2 (ENSMUSG00000037712) #12	Ddhd1 (ENSMUSG00000037697) #13	Bmp4 (ENSMUSG00000021835) #14	Cdkn3 (ENSMUSG00000037628) #15	Cnih1 (ENSMUSG00000015759) #16	Gmfb (ENSMUSG00000062014) #17	Cgrrf1 (ENSMUSG00000055128) #18	Samd4 (ENSMUSG00000021838) #19	Gch1 (ENSMUSG00000037580) #20	Wdhd1 (ENSMUSG00000037572) #21	Socs4 (ENSMUSG00000048379) #22	Mapk1ip1l (ENSMUSG00000021840) #23	Lgals3 (ENSMUSG00000050335) #24	Dlgap5 (ENSMUSG00000037544) #25	Fbxo34 (ENSMUSG00000037536) #26	Atg14 (ENSMUSG00000037526) #27	Ktn1 (ENSMUSG00000021843) #28	Peli2 (ENSMUSG00000021846) #29	Tmem260 (ENSMUSG00000036339) #30	Otx2 (ENSMUSG00000021848) #31	Exoc5 (ENSMUSG00000061244) #32	Ap5m1 (ENSMUSG00000036291) #33	Naa30 (ENSMUSG00000036282) #34	ccdc198 (ENSMUSG00000021850) #35	Slc35f4 (ENSMUSG00000021852) #36	Armh4 (ENSMUSG00000036242) #37
Mus_C	ANCESTRAL SPECIES	26	ENSGT00390000007753.b #8	ENSGT01020000230346.A #9	ENSGT00940000154859 #10	ENSGT00390000008666 #11	ENSGT00390000013444.a.a #12	ENSGT00940000156065 #13	ENSGT00860000135823	ENSGT00940000159502 #14	ENSGT00390000004717 #15	ENSGT00950000182834.A.a.a #16	ENSGT00390000008920.c.a #17	ENSGT00390000004542 #18	ENSGT00940000157933 #19	ENSGT00390000013481.c.a #20	ENSGT00390000002030 #21	ENSGT00940000161456 #22	ENSGT00730000111340.g #23	ENSGT00940000157224 #24	ENSGT00940000158652 #25	ENSGT00530000064222.b.e #26	ENSGT00390000011854 #27	ENSGT00940000158237 #28	ENSGT00950000183050.b.a #29	ENSGT00390000013544 #30	ENSGT00940000155014 #31	ENSGT00390000012837 #32	ENSGT00390000006191 #33	ENSGT00390000005665 #34	ENSGT00390000001071 #35	ENSGT00390000008727.a.b #36	ENSGT00390000012816 #37
Steppe mouse	MODERN SPECIES	2378															Wdhd1 (ENSMSIG00000017607) #21	Socs4 (ENSMSIG00000017597) #22	Mapk1ip1l (ENSMSIG00000017583) #23	Lgals3 (ENSMSIG00000017513) #24	Dlgap5 (ENSMSIG00000017481) #25	Fbxo34 (ENSMSIG00000017444) #26	Atg14 (ENSMSIG00000017425) #27
spretus	MODERN SPECIES	5	MGP_SPRETEiJ_G0020037 #12	MGP_SPRETEiJ_G0020038 #10	MGP_SPRETEiJ_G0020039 #10	Gnpnat1 (MGP_SPRETEiJ_G0020040) #11	MGP_SPRETEiJ_G0020041 #12	Ddhd1 (MGP_SPRETEiJ_G0020042) #13	MGP_SPRETEiJ_G0020043	Bmp4 (MGP_SPRETEiJ_G0020044) #14	Cdkn3 (MGP_SPRETEiJ_G0020045) #15	Cnih1 (MGP_SPRETEiJ_G0020046) #16	Gmfb (MGP_SPRETEiJ_G0020047) #17	Cgrrf1 (MGP_SPRETEiJ_G0020048) #18	Samd4 (MGP_SPRETEiJ_G0020049) #19	Gch1 (MGP_SPRETEiJ_G0020050) #20	Wdhd1 (MGP_SPRETEiJ_G0020051) #21	Socs4 (MGP_SPRETEiJ_G0020052) #22	Mapk1ip1l (MGP_SPRETEiJ_G0020053) #23	Lgals3 (MGP_SPRETEiJ_G0020054) #24	Dlgap5 (MGP_SPRETEiJ_G0020055) #25	Fbxo34 (MGP_SPRETEiJ_G0020056) #26	Atg14 (MGP_SPRETEiJ_G0020057) #27	Ktn1 (MGP_SPRETEiJ_G0020058) #28	Peli2 (MGP_SPRETEiJ_G0020059) #29	Tmem260 (MGP_SPRETEiJ_G0020060) #30	Otx2 (MGP_SPRETEiJ_G0020061) #31	Exoc5 (MGP_SPRETEiJ_G0020062) #32	Ap5m1 (MGP_SPRETEiJ_G0020063) #33	Naa30 (MGP_SPRETEiJ_G0020064) #34	ccdc198 (MGP_SPRETEiJ_G0020065) #35	Slc35f4 (MGP_SPRETEiJ_G0020066) #36	Armh4 (MGP_SPRETEiJ_G0020067) #37
Ryukyu mouse	MODERN SPECIES	5	Ero1a (MGP_CAROLIEiJ_G0019149) #8	Psmc6 (MGP_CAROLIEiJ_G0019150) #9	MGP_CAROLIEiJ_G0019151 #10	Gnpnat1 (MGP_CAROLIEiJ_G0019152) #11	Fermt2 (MGP_CAROLIEiJ_G0019153) #12	Ddhd1 (MGP_CAROLIEiJ_G0019154) #13	MGP_CAROLIEiJ_G0019155	Bmp4 (MGP_CAROLIEiJ_G0019156) #14	Cdkn3 (MGP_CAROLIEiJ_G0019157) #15	Cnih1 (MGP_CAROLIEiJ_G0019158) #16	Gmfb (MGP_CAROLIEiJ_G0019159) #17	Cgrrf1 (MGP_CAROLIEiJ_G0019160) #18	Samd4 (MGP_CAROLIEiJ_G0019161) #19	Gch1 (MGP_CAROLIEiJ_G0019162) #20	Wdhd1 (MGP_CAROLIEiJ_G0019163) #21	Socs4 (MGP_CAROLIEiJ_G0019164) #22	Mapk1ip1l (MGP_CAROLIEiJ_G0019165) #23	Lgals3 (MGP_CAROLIEiJ_G0019166) #24	Dlgap5 (MGP_CAROLIEiJ_G0019167) #25	Fbxo34 (MGP_CAROLIEiJ_G0019168) #26	Atg14 (MGP_CAROLIEiJ_G0019169) #27	Ktn1 (MGP_CAROLIEiJ_G0019170) #28	Peli2 (MGP_CAROLIEiJ_G0019171) #29	Tmem260 (MGP_CAROLIEiJ_G0019172) #30	Otx2 (MGP_CAROLIEiJ_G0019173) #31	Exoc5 (MGP_CAROLIEiJ_G0019174) #32	Ap5m1 (MGP_CAROLIEiJ_G0019175) #33	Naa30 (MGP_CAROLIEiJ_G0019176) #34	ccdc198 (MGP_CAROLIEiJ_G0019177) #35	Slc35f4 (MGP_CAROLIEiJ_G0019178) #36	Armh4 (MGP_CAROLIEiJ_G0019179) #37
Shrew mouse	MODERN SPECIES	21	Ero1a (MGP_PahariEiJ_G0030166) #8	Psmc6 (MGP_PahariEiJ_G0030167) #9	MGP_PahariEiJ_G0030168 #10	Gnpnat1 (MGP_PahariEiJ_G0030169) #11	Fermt2 (MGP_PahariEiJ_G0030170) #12	Ddhd1 (MGP_PahariEiJ_G0030171) #13	MGP_PahariEiJ_G0030172	Bmp4 (MGP_PahariEiJ_G0030173) #14	Cdkn3 (MGP_PahariEiJ_G0030174) #15	Cnih1 (MGP_PahariEiJ_G0030175) #16	Gmfb (MGP_PahariEiJ_G0030176) #17	Cgrrf1 (MGP_PahariEiJ_G0030177) #18	Samd4 (MGP_PahariEiJ_G0030178) #19	Gch1 (MGP_PahariEiJ_G0030179) #20	Wdhd1 (MGP_PahariEiJ_G0030180) #21	Socs4 (MGP_PahariEiJ_G0030181) #22	Mapk1ip1l (MGP_PahariEiJ_G0030182) #23	Lgals3 (MGP_PahariEiJ_G0030183) #24	Dlgap5 (MGP_PahariEiJ_G0030184) #25	Fbxo34 (MGP_PahariEiJ_G0030185) #26	Atg14 (MGP_PahariEiJ_G0030186) #27	Ktn1 (MGP_PahariEiJ_G0030187) #28	Peli2 (MGP_PahariEiJ_G0030188) #29	Tmem260 (MGP_PahariEiJ_G0030189) #30	Otx2 (MGP_PahariEiJ_G0030190) #31	Exoc5 (MGP_PahariEiJ_G0030191) #32	Ap5m1 (MGP_PahariEiJ_G0030192) #33	Naa30 (MGP_PahariEiJ_G0030193) #34	ccdc198 (MGP_PahariEiJ_G0030194) #35	Slc35f4 (MGP_PahariEiJ_G0030195) #36	Armh4 (MGP_PahariEiJ_G0030196) #37
Rat	MODERN SPECIES	6	Styx (ENSRNOG00000007956) #10	Gnpnat1 (ENSRNOG00000008641) #11	Fermt2 (ENSRNOG00000009102) #12	LOC108353033 (ENSRNOG00000068233)	Ddhd1 (ENSRNOG00000009481) #13	Bmp4 (ENSRNOG00000009694) #14	Cdkn3 (ENSRNOG00000009785) #15	Cnih1 (ENSRNOG00000009811) #16	Gmfb (ENSRNOG00000064480) #17	Cgrrf1 (ENSRNOG00000010178) #18	Rpl39-ps12 (ENSRNOG00000029267)	Samd4a (ENSRNOG00000010489) #19	ENSRNOG00000070489	Gch1 (ENSRNOG00000011039) #20	Wdhd1 (ENSRNOG00000011167) #21	Socs4 (ENSRNOG00000068183) #22	Mapk1ip1l (ENSRNOG00000011611) #23	Lgals3 (ENSRNOG00000010645) #24	Dlgap5 (ENSRNOG00000010721) #25	Fbxo34 (ENSRNOG00000011704) #26	Atg14 (ENSRNOG00000011873) #27	Ktn1 (ENSRNOG00000012255) #28	Peli2 (ENSRNOG00000012363) #29	Tmem260 (ENSRNOG00000013353) #30	Otx2 (ENSRNOG00000065063) #31	Exoc5 (ENSRNOG00000013804) #32	Ap5m1 (ENSRNOG00000014148) #33	Naa30 (ENSRNOG00000014192) #34	Ccdc198 (ENSRNOG00000062766) #35	Slc35f4 (ENSRNOG00000014982) #36	ENSRNOG00000067796