Theria	ANCESTRAL SPECIES	5	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000173501	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Eutheria	ANCESTRAL SPECIES	10	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Primates	ANCESTRAL SPECIES	13	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000164264
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b.v.b ##9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Lemuriformes_a	ANCESTRAL SPECIES	69	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b.v.b ##9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Greater bamboo lemur	MODERN SPECIES	243	CDCA7 (ENSPSMG00000024083) #7	SP3 (ENSPSMG00000024117) #8	OLA1 (ENSPSMG00000024129) #9	SP9 (ENSPSMG00000024136) #10	CIR1 (ENSPSMG00000024153) #11	SCRN3 (ENSPSMG00000024170) #12	GPR155 (ENSPSMG00000024199) #13	WIPF1 (ENSPSMG00000024219) #14	CHRNA1 (ENSPSMG00000024264) #15	CHN1 (ENSPSMG00000024301) #16	ATF2 (ENSPSMG00000024416) #17	ATP5MC3 (ENSPSMG00000024446) #18	LNPK (ENSPSMG00000024460) #19	ENSPSMG00000024465 #20	EVX2 (ENSPSMG00000024469) #21	HOXD13 (ENSPSMG00000024474) #22	HOXD12 (ENSPSMG00000024476) #23	HOXD11 (ENSPSMG00000024479) #24	HOXD10 (ENSPSMG00000024482) #25	HOXD9 (ENSPSMG00000024487) #26	HOXD8 (ENSPSMG00000024501) #27	HOXD4 (ENSPSMG00000024504) #28	HOXD3 (ENSPSMG00000024507) #29	ENSPSMG00000024512 #30	HOXD1 (ENSPSMG00000024516) #31	NNT (ENSPSMG00000024528) #32	PAIP1 (ENSPSMG00000024554) #33	ENSPSMG00000024563 #34
Coquerels sifaka	MODERN SPECIES	478	CDCA7 (ENSPCOG00000001432) #7	SP3 (ENSPCOG00000017224) #8	ENSPCOG00000017353 ##9	SP9 (ENSPCOG00000018883) #10	CIR1 (ENSPCOG00000014298) #11	SCRN3 (ENSPCOG00000015456) #12	GPR155 (ENSPCOG00000014376) #13	ENSPCOG00000018466	ENSPCOG00000015733	CHRNA1 (ENSPCOG00000020642) #15	CHN1 (ENSPCOG00000018830) #16	ATF2 (ENSPCOG00000025416) #17	ATP5MC3 (ENSPCOG00000016374) #18	LNPK (ENSPCOG00000026983) #19	EVX2 (ENSPCOG00000022416) #21	HOXD13 (ENSPCOG00000018735) #22	HOXD12 (ENSPCOG00000022036) #23	HOXD11 (ENSPCOG00000015055) #24	HOXD10 (ENSPCOG00000023637) #25	HOXD9 (ENSPCOG00000026809) #26	HOXD8 (ENSPCOG00000024233) #27	HOXD4 (ENSPCOG00000018337) #28	HOXD3 (ENSPCOG00000017195) #29	HOXD1 (ENSPCOG00000024445) #31	MTX2 (ENSPCOG00000025077)	NFE2L2 (ENSPCOG00000007362)	AGPS (ENSPCOG00000018665)	PDE11A (ENSPCOG00000025830)	ENSPCOG00000025842	ENSPCOG00000028806	RBM45 (ENSPCOG00000021526)
Mouse lemur	MODERN SPECIES	30	SP3 (ENSMICG00000014796) #8	ENSMICG00000000354 ##9	ENSMICG00000007356	SP9 (ENSMICG00000031506) #10	CIR1 (ENSMICG00000026886) #11	SCRN3 (ENSMICG00000000366) #12	GPR155 (ENSMICG00000000369) #13	ENSMICG00000031974	CHRNA1 (ENSMICG00000014284) #15	ENSMICG00000038672	CHN1 (ENSMICG00000014292) #16	ATF2 (ENSMICG00000006417) #17	ATP5MC3 (ENSMICG00000006421) #18	LNPK (ENSMICG00000027707) #19	EVX2 (ENSMICG00000035343) #21	HOXD13 (ENSMICG00000002170) #22	HOXD12 (ENSMICG00000002172) #23	HOXD11 (ENSMICG00000048033) #24	HOXD10 (ENSMICG00000028373) #25	HOXD9 (ENSMICG00000031229) #26	HOXD8 (ENSMICG00000004277) #27	HOXD4 (ENSMICG00000043209) #28	HOXD3 (ENSMICG00000004286) #29	HOXD1 (ENSMICG00000044650) #31	MTX2 (ENSMICG00000004295)	ENSMICG00000027841	NFE2L2 (ENSMICG00000009559)	AGPS (ENSMICG00000003750)	ENSMICG00000003768	ENSMICG00000046051	ENSMICG00000030225
Bushbaby	MODERN SPECIES	163	SP3 (ENSOGAG00000026846) #8	OLA1 (ENSOGAG00000016557) #9	SP9 (ENSOGAG00000034062) #10	CIR1 (ENSOGAG00000016564) #11	SCRN3 (ENSOGAG00000016569) #12	GPR155 (ENSOGAG00000016571) #13	WIPF1 (ENSOGAG00000016579) #14	CHRNA1 (ENSOGAG00000000890) #15	CHN1 (ENSOGAG00000000894) #16	ATF2 (ENSOGAG00000011373) #17	ATP5MC3 (ENSOGAG00000027578) #18	ENSOGAG00000026184	ENSOGAG00000030354	LNPK (ENSOGAG00000030372) #19	EVX2 (ENSOGAG00000025378) #21	HOXD13 (ENSOGAG00000027055) #22	HOXD12 (ENSOGAG00000015689) #23	HOXD11 (ENSOGAG00000029520) #24	HOXD10 (ENSOGAG00000015694) #25	HOXD9 (ENSOGAG00000015697) #26	HOXD8 (ENSOGAG00000015707) #27	HOXD4 (ENSOGAG00000029168) #28	HOXD3 (ENSOGAG00000015710) #29	HOXD1 (ENSOGAG00000015712) #31	MTX2 (ENSOGAG00000016422)	ENSOGAG00000032690	ENSOGAG00000028132	NFE2L2 (ENSOGAG00000034393)	AGPS (ENSOGAG00000013184)	ENSOGAG00000013189	ENSOGAG00000013191
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099.a #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00940000161352	ENSGT00940000155436.o.a.b #7	ENSGT00940000155099.a #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.lb	ENSGT00390000010116.mb	ENSGT00940000162151
Mas night monkey	MODERN SPECIES	1333									ENSANAG00000011341	ENSANAG00000037338 #17	ENSANAG00000033889 #18	ENSANAG00000023367	ENSANAG00000021797	LNPK (ENSANAG00000019161) #19	EVX2 (ENSANAG00000031929) #21	HOXD13 (ENSANAG00000029500) #22	HOXD12 (ENSANAG00000008919) #23	HOXD11 (ENSANAG00000029678) #24	HOXD10 (ENSANAG00000025381) #25	HOXD9 (ENSANAG00000024699) #26	HOXD8 (ENSANAG00000026980) #27	HOXD4 (ENSANAG00000028028) #28	HOXD3 (ENSANAG00000026428) #29	HOXD1 (ENSANAG00000019775) #31	ENSANAG00000031061	MTX2 (ENSANAG00000022501)	HNRNPA3 (ENSANAG00000002931)	NFE2L2 (ENSANAG00000023669)	AGPS (ENSANAG00000019626)	ENSANAG00000003240	ENSANAG00000025414
Cebidae	ANCESTRAL SPECIES	11	ENSGT00940000161352	ENSGT00940000155436.o.a.a #7	ENSGT00940000155099.a #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.lb	ENSGT00390000010116.mb	ENSGT00940000162151
Marmoset	MODERN SPECIES	18	SP9 (ENSCJAG00000061755) #10	ENSCJAG00000081398	CIR1 (ENSCJAG00000007884) #11	SCRN3 (ENSCJAG00000007909) #12	GPR155 (ENSCJAG00000007947) #13	WIPF1 (ENSCJAG00000048519) #14	CHRNA1 (ENSCJAG00000008007) #15	CHN1 (ENSCJAG00000008041) #16	ATF2 (ENSCJAG00000008085) #17	ATP5MC3 (ENSCJAG00000008207) #18	ENSCJAG00000080703	ENSCJAG00000084464	ENSCJAG00000022954	LNPK (ENSCJAG00000008226) #19	EVX2 (ENSCJAG00000077487) #21	HOXD13 (ENSCJAG00000040882) #22	HOXD12 (ENSCJAG00000079626) #23	HOXD11 (ENSCJAG00000048503) #24	HOXD10 (ENSCJAG00000008269) #25	HOXD9 (ENSCJAG00000046789) #26	HOXD8 (ENSCJAG00000008284) #27	HOXD4 (ENSCJAG00000008286) #28	HOXD3 (ENSCJAG00000063715) #29	HOXD1 (ENSCJAG00000008290) #31	MTX2 (ENSCJAG00000039174)	ENSCJAG00000072603	ENSCJAG00000006928	NFE2L2 (ENSCJAG00000008340)	ENSCJAG00000059559	ENSCJAG00000021732	AGPS (ENSCJAG00000021508)
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT00940000156075.a.a	ENSGT00940000161352	ENSGT00940000155436.o.a.b #7	ENSGT00940000155099.a #8	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.lb	ENSGT00390000010116.mb	ENSGT00940000162151
Capuchin	MODERN SPECIES	110	ENSCCAG00000028608	ENSCCAG00000035969	SP9 (ENSCCAG00000031565) #10	CIR1 (ENSCCAG00000030492) #11	SCRN3 (ENSCCAG00000022566) #12	GPR155 (ENSCCAG00000032455) #13	WIPF1 (ENSCCAG00000012994) #14	CHRNA1 (ENSCCAG00000032209) #15	CHN1 (ENSCCAG00000027038) #16	ENSCCAG00000034541	ATF2 (ENSCCAG00000035902) #17	ENSCCAG00000020514 #18	ENSCCAG00000015947	LNPK (ENSCCAG00000022702) #19	EVX2 (ENSCCAG00000032502) #21	HOXD13 (ENSCCAG00000032945) #22	HOXD12 (ENSCCAG00000026325) #23	HOXD11 (ENSCCAG00000034968) #24	HOXD10 (ENSCCAG00000020764) #25	HOXD9 (ENSCCAG00000021007) #26	HOXD8 (ENSCCAG00000001172) #27	ENSCCAG00000035403 #28
Bolivian squirrel monkey	MODERN SPECIES	46	MAP3K20 (ENSSBOG00000023872)	ENSSBOG00000029333 #7	SP3 (ENSSBOG00000035329) #8	ENSSBOG00000002999 #9	ENSSBOG00000020259	CIR1 (ENSSBOG00000028527) #11	SCRN3 (ENSSBOG00000033089) #12	GPR155 (ENSSBOG00000034957) #13	WIPF1 (ENSSBOG00000032169) #14	CHRNA1 (ENSSBOG00000035763) #15	CHN1 (ENSSBOG00000016307) #16	ATF2 (ENSSBOG00000025461) #17	ATP5MC3 (ENSSBOG00000022688) #18	LNPK (ENSSBOG00000023054) #19	EVX2 (ENSSBOG00000034364) #21	HOXD13 (ENSSBOG00000032579) #22	HOXD12 (ENSSBOG00000025723) #23	HOXD10 (ENSSBOG00000020553) #25	HOXD9 (ENSSBOG00000031095) #26	ENSSBOG00000029405 #27	HOXD4 (ENSSBOG00000031535) #28	HOXD3 (ENSSBOG00000031894) #29	HOXD1 (ENSSBOG00000030906) #31	MTX2 (ENSSBOG00000025795)	HNRNPA3 (ENSSBOG00000034307)	NFE2L2 (ENSSBOG00000022740)	AGPS (ENSSBOG00000026720)	ENSSBOG00000019156	ENSSBOG00000018055	PDE11A (ENSSBOG00000026746)	RBM45 (ENSSBOG00000005469)
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099.a #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00910000147400	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00940000155099.a #8	ENSGT00390000000673.b.a.a #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00910000147400	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112
Gibbon	MODERN SPECIES	14	OLA1 (ENSNLEG00000005817) #9	ENSNLEG00000030268	ENSNLEG00000033171	ENSNLEG00000005869 #11	SCRN3 (ENSNLEG00000005880) #12	GPR155 (ENSNLEG00000005896) #13	ENSNLEG00000033625	WIPF1 (ENSNLEG00000005907) #14	CHRNA1 (ENSNLEG00000005914) #15	CHN1 (ENSNLEG00000005923) #16	ENSNLEG00000028605	ATF2 (ENSNLEG00000005938) #17	ATP5MC3 (ENSNLEG00000005971) #18	LNPK (ENSNLEG00000005977) #19	EVX2 (ENSNLEG00000005999) #21	HOXD13 (ENSNLEG00000029303) #22	HOXD12 (ENSNLEG00000006006) #23	HOXD10 (ENSNLEG00000006010) #25	HOXD9 (ENSNLEG00000006011) #26	ENSNLEG00000006003 #27	HOXD4 (ENSNLEG00000006014) #28	HOXD3 (ENSNLEG00000006018) #29	ENSNLEG00000027160	HOXD1 (ENSNLEG00000006019) #31	MTX2 (ENSNLEG00000006020)	ENSNLEG00000035565	ENSNLEG00000029348	HNRNPA3 (ENSNLEG00000028401)	NFE2L2 (ENSNLEG00000006029)	AGPS (ENSNLEG00000006030)	TTC30B (ENSNLEG00000033307)
Hominidae	ANCESTRAL SPECIES	17	ENSGT00940000155099.a #8	ENSGT00390000000673.b.a.a #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00910000147400	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112
Orangutan	MODERN SPECIES	15	CDCA7 (ENSPPYG00000012940) #7	SP3 (ENSPPYG00000012941) #8	OLA1 (ENSPPYG00000012943) #9	SP9 (ENSPPYG00000033437) #10	ENSPPYG00000012945 #11	ENSPPYG00000012946 #12	GPR155 (ENSPPYG00000012947) #13	WIPF1 (ENSPPYG00000012948) #14	CHRNA1 (ENSPPYG00000012949) #15	CHN1 (ENSPPYG00000012950) #16	ATF2 (ENSPPYG00000012951) #17	ENSPPYG00000041465	ATP5MC3 (ENSPPYG00000037033) #18	LNPK (ENSPPYG00000032630) #19	EVX2 (ENSPPYG00000012955) #21	HOXD13 (ENSPPYG00000012956) #22	HOXD12 (ENSPPYG00000012957) #23	HOXD11 (ENSPPYG00000031598) #24	HOXD10 (ENSPPYG00000012958) #25	HOXD9 (ENSPPYG00000012959) #26	HOXD8 (ENSPPYG00000037201) #27	HOXD4 (ENSPPYG00000034536) #28	HOXD3 (ENSPPYG00000012963) #29	HOXD1 (ENSPPYG00000012964) #31	ENSPPYG00000037565	MTX2 (ENSPPYG00000012966)	HNRNPA3 (ENSPPYG00000012967)	NFE2L2 (ENSPPYG00000012968)	AGPS (ENSPPYG00000012969)	TTC30B (ENSPPYG00000034101)	TTC30A (ENSPPYG00000038583)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00940000155099.a #8	ENSGT00390000000673.b.a.a #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00910000147400	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.jb
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	15	PJVK (ENSGGOG00000011071)	PRKRA (ENSGGOG00000005754)	OSBPL6 (ENSGGOG00000008266)	RBM45 (ENSGGOG00000013981)	ENSGGOG00000040977	ENSGGOG00000040822	PDE11A (ENSGGOG00000034968)	TTC30A (ENSGGOG00000009811)	AGPS (ENSGGOG00000012114)	ENSGGOG00000037000	NFE2L2 (ENSGGOG00000001231)	HNRNPA3 (ENSGGOG00000006130)	ENSGGOG00000043877	ENSGGOG00000037084 #12	MTX2 (ENSGGOG00000044125)	ENSGGOG00000040237 #22	ENSGGOG00000040635 #23	ENSGGOG00000041480	HOXD1 (ENSGGOG00000001348) #31	ENSGGOG00000037792	HOXD3 (ENSGGOG00000037089) #29	HOXD4 (ENSGGOG00000042533) #28	ENSGGOG00000009898 #27	HOXD9 (ENSGGOG00000001343) #26	HOXD10 (ENSGGOG00000001341) #25	ENSGGOG00000044084	ENSGGOG00000038035 #23	ENSGGOG00000041387 #22	EVX2 (ENSGGOG00000001335) #21	LNPK (ENSGGOG00000007852) #19	ATP5MC3 (ENSGGOG00000036796) #18
Gorilla	MODERN SPECIES	15	ENSGGOG00000041018	ENSGGOG00000041228	SP3 (ENSGGOG00000011699) #8	OLA1 (ENSGGOG00000022215) #9	SP9 (ENSGGOG00000007345) #10	SCRN3 (ENSGGOG00000034896) #12	GPR155 (ENSGGOG00000004876) #13	ENSGGOG00000005480	WIPF1 (ENSGGOG00000016773) #14	CHRNA1 (ENSGGOG00000008036) #15	CHN1 (ENSGGOG00000002177) #16	ATF2 (ENSGGOG00000027461) #17	ATP5MC3 (ENSGGOG00000036796) #18	LNPK (ENSGGOG00000007852) #19	EVX2 (ENSGGOG00000001335) #21	ENSGGOG00000041387 #22	ENSGGOG00000038035 #23	ENSGGOG00000044084	HOXD10 (ENSGGOG00000001341) #25	HOXD9 (ENSGGOG00000001343) #26	ENSGGOG00000009898 #27	HOXD4 (ENSGGOG00000042533) #28	HOXD3 (ENSGGOG00000037089) #29	ENSGGOG00000037792	HOXD1 (ENSGGOG00000001348) #31	ENSGGOG00000041480	ENSGGOG00000040635 #23	ENSGGOG00000040237 #22	MTX2 (ENSGGOG00000044125)	ENSGGOG00000037084 #12	ENSGGOG00000043877
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00940000155099.a #8	ENSGT00390000000673.b.a.a #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00910000147400	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.jb
Human	MODERN SPECIES	11	MAP3K20 (ENSG00000091436)	CDCA7 (ENSG00000144354) #7	SP3 (ENSG00000172845) #8	OLA1 (ENSG00000138430) #9	SP9 (ENSG00000217236) #10	CIR1 (ENSG00000138433) #11	SCRN3 (ENSG00000144306) #12	GPR155 (ENSG00000163328) #13	WIPF1 (ENSG00000115935) #14	CHRNA1 (ENSG00000138435) #15	CHN1 (ENSG00000128656) #16	ATF2 (ENSG00000115966) #17	ATP5MC3 (ENSG00000154518) #18	LNPK (ENSG00000144320) #19	EVX2 (ENSG00000174279) #21	HOXD13 (ENSG00000128714) #22	HOXD12 (ENSG00000170178) #23	HOXD11 (ENSG00000128713) #24	HOXD10 (ENSG00000128710) #25	HOXD9 (ENSG00000128709) #26	HOXD8 (ENSG00000175879) #27	HOXD3 (ENSG00000128652) #29	HOXD4 (ENSG00000170166) #28	HOXD1 (ENSG00000128645) #31	MTX2 (ENSG00000128654)	HNRNPA3 (ENSG00000170144)	NFE2L2 (ENSG00000116044)	AGPS (ENSG00000018510)	TTC30B (ENSG00000196659)	TTC30A (ENSG00000197557)	PDE11A (ENSG00000128655)
Pan	ANCESTRAL SPECIES	12	ENSGT00940000155099.a #8	ENSGT00390000000673.b.a.a #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00910000147400	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.jb
Chimpanzee	MODERN SPECIES	15	ENSPTRG00000051676	ENSPTRG00000044219	SP3 (ENSPTRG00000012647) #8	OLA1 (ENSPTRG00000012650) #9	SP9 (ENSPTRG00000045805) #10	CIR1 (ENSPTRG00000012652) #11	SCRN3 (ENSPTRG00000012653) #12	GPR155 (ENSPTRG00000012655) #13	WIPF1 (ENSPTRG00000012656)	CHRNA1 (ENSPTRG00000012658) #15	CHN1 (ENSPTRG00000012659) #16	ATF2 (ENSPTRG00000012660) #17	ATP5MC3 (ENSPTRG00000047314) #18	LNPK (ENSPTRG00000012662) #19	EVX2 (ENSPTRG00000012663) #21	HOXD13 (ENSPTRG00000012664) #22	HOXD12 (ENSPTRG00000012665) #23	HOXD11 (ENSPTRG00000012666) #24	HOXD10 (ENSPTRG00000012667) #25	HOXD9 (ENSPTRG00000043464) #26	HOXD8 (ENSPTRG00000012669) #27	HOXD4 (ENSPTRG00000051862) #28	HOXD3 (ENSPTRG00000012672) #29	ENSPTRG00000051348	HOXD1 (ENSPTRG00000052716) #31	ENSPTRG00000023851	MTX2 (ENSPTRG00000012674)	ENSPTRG00000042815	HNRNPA3 (ENSPTRG00000012676)	NFE2L2 (ENSPTRG00000012677)	AGPS (ENSPTRG00000012680)
Bonobo	MODERN SPECIES	15	ENSPPAG00000027126	ENSPPAG00000037850	SP3 (ENSPPAG00000028328) #8	OLA1 (ENSPPAG00000035004) #9	CIR1 (ENSPPAG00000041485) #11	SCRN3 (ENSPPAG00000032328) #12	GPR155 (ENSPPAG00000032733) #13	ENSPPAG00000040473	WIPF1 (ENSPPAG00000037968) #14	CHRNA1 (ENSPPAG00000024985) #15	ENSPPAG00000023882 #16	ATF2 (ENSPPAG00000027656) #17	ATP5MC3 (ENSPPAG00000036512) #18	LNPK (ENSPPAG00000030440) #19	ENSPPAG00000039855 #21	ENSPPAG00000010483 #22	HOXD12 (ENSPPAG00000017089) #23	ENSPPAG00000028125 #24	HOXD10 (ENSPPAG00000036046) #25	HOXD9 (ENSPPAG00000039242) #26	ENSPPAG00000034189 #27	HOXD4 (ENSPPAG00000034992) #28	HOXD3 (ENSPPAG00000031713) #29	ENSPPAG00000013988	ENSPPAG00000031665 #31	ENSPPAG00000025118	MTX2 (ENSPPAG00000043265)	ENSPPAG00000012679	HNRNPA3 (ENSPPAG00000023768)	NFE2L2 (ENSPPAG00000037501)	AGPS (ENSPPAG00000036868)
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00940000162422.d	ENSGT00940000155099.a #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135.g #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00910000147400	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112
Rhinopithecus	ANCESTRAL SPECIES	148											ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00950000182827.A.i.b	ENSGT00390000001859.c #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00940000154301.`b.a	ENSGT00960000186717.a	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112
Black snub-nosed monkey	MODERN SPECIES	241												ATF2 (ENSRBIG00000041657) #17	ATP5MC3 (ENSRBIG00000040343) #18	ENSRBIG00000038159	LNPK (ENSRBIG00000038235) #19	HOXD13 (ENSRBIG00000033719) #22	ENSRBIG00000035253 #24	HOXD12 (ENSRBIG00000040792) #23	HOXD10 (ENSRBIG00000030470) #25	HOXD9 (ENSRBIG00000035340) #26	HOXD8 (ENSRBIG00000036417) #27	HOXD4 (ENSRBIG00000027637) #28	HOXD3 (ENSRBIG00000044829) #29	HOXD1 (ENSRBIG00000031297) #31	ENSRBIG00000032024	ENSRBIG00000042767	MTX2 (ENSRBIG00000043097)	ENSRBIG00000012615	NFE2L2 (ENSRBIG00000042825)	AGPS (ENSRBIG00000039582)	TTC30A (ENSRBIG00000041155)
Golden snub-nosed monkey	MODERN SPECIES	722													ENSRROG00000041768 #19	ENSRROG00000044546	EVX2 (ENSRROG00000044705) #21	HOXD13 (ENSRROG00000040419) #22	HOXD12 (ENSRROG00000043268) #23	ENSRROG00000043226 #24	HOXD9 (ENSRROG00000032216) #26	HOXD10 (ENSRROG00000036162) #25	ENSRROG00000024611 #27	HOXD4 (ENSRROG00000026646) #28	HOXD3 (ENSRROG00000044509) #29	HOXD1 (ENSRROG00000035364) #31	ENSRROG00000038369	ENSRROG00000042876	ENSRROG00000020854	MTX2 (ENSRROG00000030249)	ENSRROG00000028794	NFE2L2 (ENSRROG00000045317)	AGPS (ENSRROG00000035068)
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00940000162422.d	ENSGT00940000155099.a #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135.g #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00910000147400	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.jb
Vervet Monkey	MODERN SPECIES	1	ENSCSAG00000014706	ENSCSAG00000014701	CDCA7 (ENSCSAG00000014699) #7	SP3 (ENSCSAG00000014689) #8	OLA1 (ENSCSAG00000014670) #9	SP9 (ENSCSAG00000014648) #10	CIR1 (ENSCSAG00000014627) #11	SCRN3 (ENSCSAG00000014584) #12	GPR155 (ENSCSAG00000014572) #13	WIPF1 (ENSCSAG00000014556) #14	CHRNA1 (ENSCSAG00000014545) #15	CHN1 (ENSCSAG00000014539) #16	ATF2 (ENSCSAG00000014523) #17	LNPK (ENSCSAG00000014506) #19	EVX2 (ENSCSAG00000014486) #21	HOXD13 (ENSCSAG00000014475) #22	HOXD12 (ENSCSAG00000014464) #23	HOXD11 (ENSCSAG00000014457) #24	HOXD10 (ENSCSAG00000014448) #25	HOXD9 (ENSCSAG00000014441) #26	HOXD8 (ENSCSAG00000014437) #27	HOXD4 (ENSCSAG00000014429) #28	HOXD3 (ENSCSAG00000014422) #29	HOXD1 (ENSCSAG00000014419) #31	MTX2 (ENSCSAG00000014412)	ENSCSAG00000014399	NFE2L2 (ENSCSAG00000014353)	AGPS (ENSCSAG00000014345)	TTC30A (ENSCSAG00000018651)	PDE11A (ENSCSAG00000014313)	ENSCSAG00000014240
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135.g #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000165163	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #19	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00910000147400	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.jb
Macaca	ANCESTRAL SPECIES	15	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135.g #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000165163	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00390000018390.jc.n	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00910000147400	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.jb
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00940000155099.a #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135.g #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000166143.A.a.b.b.b.b.a.b.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00950000182827.A.j	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00910000147400	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000170471.B.a.a.a	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112
Rhesus	MODERN SPECIES	3	SP3 (ENSMMUG00000021818) #8	ENSMMUG00000060201	OLA1 (ENSMMUG00000007092) #9	SP9 (ENSMMUG00000023005) #10	CIR1 (ENSMMUG00000023006) #11	SCRN3 (ENSMMUG00000023009) #12	GPR155 (ENSMMUG00000021012) #13	ENSMMUG00000053004	WIPF1 (ENSMMUG00000009593) #14	CHRNA1 (ENSMMUG00000021796) #15	CHN1 (ENSMMUG00000021797) #16	ATF2 (ENSMMUG00000003947) #17	ATP5MC3 (ENSMMUG00000003954) #18	LNPK (ENSMMUG00000023498) #19	EVX2 (ENSMMUG00000061506) #21	HOXD13 (ENSMMUG00000055831) #22	HOXD12 (ENSMMUG00000023501) #23	HOXD11 (ENSMMUG00000047915) #24	HOXD10 (ENSMMUG00000046368) #25	HOXD9 (ENSMMUG00000032599) #26	HOXD8 (ENSMMUG00000023504) #27	HOXD4 (ENSMMUG00000060947) #28	HOXD3 (ENSMMUG00000051761) #29	ENSMMUG00000052177	HOXD1 (ENSMMUG00000065344) #31	MTX2 (ENSMMUG00000010185)	ENSMMUG00000031367	ENSMMUG00000054983	ENSMMUG00000062299	HNRNPA3 (ENSMMUG00000001858)	NFE2L2 (ENSMMUG00000001861)
Crab-eating macaque	MODERN SPECIES	3	OLA1 (ENSMFAG00000044124) #9	SP9 (ENSMFAG00000035384) #10	GPR155 (ENSMFAG00000035341) #13	SCRN3 (ENSMFAG00000042925) #12	ENSMFAG00000056942	ENSMFAG00000039499	ENSMFAG00000060672	WIPF1 (ENSMFAG00000034165) #14	CHRNA1 (ENSMFAG00000042992) #15	CHN1 (ENSMFAG00000002404) #16	ATF2 (ENSMFAG00000002278) #17	ATP5MC3 (ENSMFAG00000056189) #18	ENSMFAG00000002936	LNPK (ENSMFAG00000002105) #19	ENSMFAG00000053875	HOXD13 (ENSMFAG00000033237) #22	HOXD12 (ENSMFAG00000051547) #23	ENSMFAG00000043724 #24	HOXD10 (ENSMFAG00000031117) #25	HOXD9 (ENSMFAG00000000099) #26	HOXD8 (ENSMFAG00000065214) #27	HOXD4 (ENSMFAG00000052240) #28	HOXD3 (ENSMFAG00000034065) #29	ENSMFAG00000047422	HOXD1 (ENSMFAG00000046035) #31	MTX2 (ENSMFAG00000026822)	ENSMFAG00000065500	ENSMFAG00000058081	HNRNPA3 (ENSMFAG00000000823)	NFE2L2 (ENSMFAG00000041108)	AGPS (ENSMFAG00000038904)
Pig-tailed macaque	MODERN SPECIES	585	SP9 (ENSMNEG00000034757) #10	CIR1 (ENSMNEG00000045151) #11	SCRN3 (ENSMNEG00000035295) #12	GPR155 (ENSMNEG00000028550) #13	ENSMNEG00000031252	WIPF1 (ENSMNEG00000045560) #14	CHRNA1 (ENSMNEG00000043912) #15	ENSMNEG00000009103	CHN1 (ENSMNEG00000033120) #16	ATF2 (ENSMNEG00000037988) #17	ATP5MC3 (ENSMNEG00000029106) #18	ENSMNEG00000035184	LNPK (ENSMNEG00000028702) #19	ENSMNEG00000024050	EVX2 (ENSMNEG00000028323) #21	HOXD13 (ENSMNEG00000027142) #22	HOXD12 (ENSMNEG00000002891) #23	HOXD11 (ENSMNEG00000029127) #24	HOXD10 (ENSMNEG00000033923) #25	HOXD9 (ENSMNEG00000044938) #26	HOXD8 (ENSMNEG00000028133) #27	HOXD4 (ENSMNEG00000030845) #28	HOXD3 (ENSMNEG00000040202) #29	ENSMNEG00000018849	HOXD1 (ENSMNEG00000010514) #31	MTX2 (ENSMNEG00000032881)	ENSMNEG00000026533	ENSMNEG00000034936	NFE2L2 (ENSMNEG00000028208)	AGPS (ENSMNEG00000043672)	TTC30B (ENSMNEG00000011632)
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00940000162304 #10	ENSGT00730000111135.g #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000165163	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00950000182827.A.i.b	ENSGT00950000182827.A.j	ENSGT00390000001859 #19	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00910000147400	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.jb
Olive baboon	DUPLICATION
Olive baboon	MODERN SPECIES	1	ENSPANG00000037160	OLA1 (ENSPANG00000020854) #9	ENSPANG00000035758	SP9 (ENSPANG00000051025) #10	CIR1 (ENSPANG00000033102) #11	SCRN3 (ENSPANG00000001316) #12	GPR155 (ENSPANG00000006559) #13	WIPF1 (ENSPANG00000019541) #14	CHRNA1 (ENSPANG00000007790) #15	CHN1 (ENSPANG00000008236) #16	ENSPANG00000005473	ATF2 (ENSPANG00000004806) #17	ATP5MC3 (ENSPANG00000031591) #18	LNPK (ENSPANG00000011787) #19	ENSPANG00000039545 #21	ENSPANG00000044695 #22	ENSPANG00000044332 #23	HOXD11 (ENSPANG00000049530) #24	HOXD10 (ENSPANG00000050198) #25	HOXD9 (ENSPANG00000001061) #26	HOXD8 (ENSPANG00000049199) #27	HOXD4 (ENSPANG00000000542) #28	HOXD3 (ENSPANG00000000543) #29	HOXD1 (ENSPANG00000009593) #31	MTX2 (ENSPANG00000013333)	ENSPANG00000045287	ENSPANG00000018337	NFE2L2 (ENSPANG00000039361)	AGPS (ENSPANG00000004764)	TTC30B (ENSPANG00000046724)	TTC30A (ENSPANG00000041839)
Olive baboon	MODERN SPECIES	269															ENSPANG00000050673 #21	ENSPANG00000012770 #22	ENSPANG00000046111 #23
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00940000162304 #10	ENSGT00730000111135.g #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000165163	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00950000182827.A.i.b	ENSGT00950000182827.A.j	ENSGT00390000001859 #19	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00910000147400	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.jb
Sooty mangabey	MODERN SPECIES	570	SP9 (ENSCATG00000031475) #10	CIR1 (ENSCATG00000034814) #11	SCRN3 (ENSCATG00000032178) #12	GPR155 (ENSCATG00000033300) #13	WIPF1 (ENSCATG00000022645) #14	CHRNA1 (ENSCATG00000030584) #15	CHN1 (ENSCATG00000036640) #16	ENSCATG00000035911	ATF2 (ENSCATG00000005694) #17	ATP5MC3 (ENSCATG00000035329) #18	ENSCATG00000037951	ENSCATG00000041432	LNPK (ENSCATG00000039052) #19	ENSCATG00000005782	EVX2 (ENSCATG00000038250) #21	HOXD13 (ENSCATG00000031889) #22	HOXD12 (ENSCATG00000032043) #23	HOXD10 (ENSCATG00000032256) #25	HOXD11 (ENSCATG00000031157) #24	HOXD9 (ENSCATG00000037190) #26	HOXD8 (ENSCATG00000032148) #27	HOXD4 (ENSCATG00000041719) #28	HOXD3 (ENSCATG00000029355) #29	ENSCATG00000032250	HOXD1 (ENSCATG00000032397) #31	MTX2 (ENSCATG00000039959)	ENSCATG00000022731	HNRNPA3 (ENSCATG00000032162)	ENSCATG00000001855	NFE2L2 (ENSCATG00000036834)	AGPS (ENSCATG00000038387)
Drill	MODERN SPECIES	1072	ENSMLEG00000042096	OLA1 (ENSMLEG00000040175) #9	CIR1 (ENSMLEG00000009014) #11	SCRN3 (ENSMLEG00000043626) #12	GPR155 (ENSMLEG00000027961) #13	ENSMLEG00000029654	WIPF1 (ENSMLEG00000001484) #14	CHRNA1 (ENSMLEG00000043089) #15	ENSMLEG00000000615	CHN1 (ENSMLEG00000032406) #16	ATF2 (ENSMLEG00000035167) #17	ATP5MC3 (ENSMLEG00000043816) #18	ENSMLEG00000001270	LNPK (ENSMLEG00000033659) #19	EVX2 (ENSMLEG00000035528) #21	HOXD13 (ENSMLEG00000031532) #22	HOXD12 (ENSMLEG00000032533) #23	ENSMLEG00000030792 #24	HOXD10 (ENSMLEG00000044067) #25	HOXD9 (ENSMLEG00000025695) #26	ENSMLEG00000042507 #27	HOXD4 (ENSMLEG00000024188) #28	HOXD3 (ENSMLEG00000037278) #29	HOXD1 (ENSMLEG00000035890) #31	MTX2 (ENSMLEG00000002029)	NFE2L2 (ENSMLEG00000042705)	AGPS (ENSMLEG00000033858)	TTC30B (ENSMLEG00000027894)	TTC30A (ENSMLEG00000027775)	ENSMLEG00000039892	ENSMLEG00000035955
Tarsier	MODERN SPECIES	1221															EVX2 (ENSTSYG00000003728) #21	HOXD13 (ENSTSYG00000003737) #22	HOXD12 (ENSTSYG00000003740) #23	ENSTSYG00000035865 #24	HOXD10 (ENSTSYG00000002769) #25
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Glires	ANCESTRAL SPECIES	14	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Rodentia	ANCESTRAL SPECIES	14	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b.p	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Muroidea	ANCESTRAL SPECIES	34	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b.p	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.y.b	ENSGT00390000010116.y.a	ENSGT00940000162151
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b.p	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.y.b	ENSGT00390000010116.y.a.a	ENSGT00940000162151
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.y.b	ENSGT00390000010116.y.a.b	ENSGT00390000010116.y.a.a
Mus	ANCESTRAL SPECIES	1	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.y.b	ENSGT00390000010116.y.a.b
Mus_A	ANCESTRAL SPECIES		ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.y.b	ENSGT00390000010116.y.a.b
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000161352	ENSGT00940000155436.k #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.y.b	ENSGT00390000010116.y.a.b	ENSGT00390000010116.y.a.a
Mouse	MODERN SPECIES	11	Map3k20 (ENSMUSG00000004085)	Cdca7 (ENSMUSG00000055612) #7	Sp3 (ENSMUSG00000027109) #8	Ola1 (ENSMUSG00000027108) #9	Sp9 (ENSMUSG00000068859) #10	Cir1 (ENSMUSG00000041777) #11	Scrn3 (ENSMUSG00000008226) #12	Gpr155 (ENSMUSG00000041762) #13	Wipf1 (ENSMUSG00000075284) #14	Chrna1 (ENSMUSG00000027107) #15	Chn1 (ENSMUSG00000056486) #16	Atf2 (ENSMUSG00000027104) #17	Atp5g3 (ENSMUSG00000018770) #18	Lnpk (ENSMUSG00000009207) #19	Evx2 (ENSMUSG00000001815) #21	Hoxd13 (ENSMUSG00000001819) #22	Hoxd12 (ENSMUSG00000001823) #23	Hoxd11 (ENSMUSG00000042499) #24	Hoxd10 (ENSMUSG00000050368) #25	Hoxd9 (ENSMUSG00000043342) #26	Hoxd8 (ENSMUSG00000027102) #27	Hoxd3 (ENSMUSG00000079277) #29	Hoxd4 (ENSMUSG00000101174) #28	Hoxd1 (ENSMUSG00000042448) #31	Mtx2 (ENSMUSG00000027099)	Hnrnpa3 (ENSMUSG00000059005)	Nfe2l2 (ENSMUSG00000015839)	Agps (ENSMUSG00000042410)	Ttc30b (ENSMUSG00000075273)	Ttc30a2 (ENSMUSG00000075272)	Ttc30a1 (ENSMUSG00000075271)
Mus_C	ANCESTRAL SPECIES		ENSGT00940000161352	ENSGT00940000155436.k #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.b	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.y.b	ENSGT00940000162151
spretus	MODERN SPECIES	11	Cdca7 (MGP_SPRETEiJ_G0024575) #7	Sp3 (MGP_SPRETEiJ_G0024576) #8	MGP_SPRETEiJ_G0024577	Ola1 (MGP_SPRETEiJ_G0024578) #9	Sp9 (MGP_SPRETEiJ_G0024579) #10	Cir1 (MGP_SPRETEiJ_G0024580) #11	Scrn3 (MGP_SPRETEiJ_G0024581) #12	Gpr155 (MGP_SPRETEiJ_G0024582) #13	Wipf1 (MGP_SPRETEiJ_G0024583) #14	Chrna1 (MGP_SPRETEiJ_G0024584) #15	Chn1 (MGP_SPRETEiJ_G0024585) #16	Atf2 (MGP_SPRETEiJ_G0024586) #17	Atp5g3 (MGP_SPRETEiJ_G0024587) #18	Lnpk (MGP_SPRETEiJ_G0024588) #19	Evx2 (MGP_SPRETEiJ_G0024589) #21	Hoxd13 (MGP_SPRETEiJ_G0024590) #22	Hoxd12 (MGP_SPRETEiJ_G0024591) #23	Hoxd11 (MGP_SPRETEiJ_G0024592) #24	Hoxd10 (MGP_SPRETEiJ_G0024593) #25	Hoxd9 (MGP_SPRETEiJ_G0024594) #26	Hoxd8 (MGP_SPRETEiJ_G0024595) #27	Hoxd3 (MGP_SPRETEiJ_G0024596) #29	Hoxd4 (MGP_SPRETEiJ_G0024597) #28	MGP_SPRETEiJ_G0024598 #28	Hoxd1 (MGP_SPRETEiJ_G0024599) #31	Mtx2 (MGP_SPRETEiJ_G0024600)	MGP_SPRETEiJ_G0024601	Nfe2l2 (MGP_SPRETEiJ_G0024602)	Agps (MGP_SPRETEiJ_G0024603)	MGP_SPRETEiJ_G0024604	Pde11a (MGP_SPRETEiJ_G0024605)
Steppe mouse	MODERN SPECIES	3326	ENSMSIG00000007302	Ola1 (ENSMSIG00000007200) #9	Sp9 (ENSMSIG00000007182) #10	Cir1 (ENSMSIG00000007130) #11	Scrn3 (ENSMSIG00000007111) #12	Gpr155 (ENSMSIG00000006975) #13	Wipf1 (ENSMSIG00000006899) #14	Chrna1 (ENSMSIG00000006852) #15	Chn1 (ENSMSIG00000006692) #16	ENSMSIG00000006659	Atf2 (ENSMSIG00000006546) #17	Atp5g3 (ENSMSIG00000006512) #18	ENSMSIG00000006495	Lnpk (ENSMSIG00000006386) #19	Evx2 (ENSMSIG00000006361) #21	Hoxd13 (ENSMSIG00000006348) #22	Hoxd12 (ENSMSIG00000006333) #23	Hoxd11 (ENSMSIG00000006326) #24	Hoxd10 (ENSMSIG00000006313) #25	Hoxd9 (ENSMSIG00000006304) #26	Hoxd8 (ENSMSIG00000006283) #27	ENSMSIG00000006186 #28	Hoxd3 (ENSMSIG00000006158) #29	Hoxd1 (ENSMSIG00000006137) #31	Mtx2 (ENSMSIG00000006053)	ENSMSIG00000006005	ENSMSIG00000005981	ENSMSIG00000005709	Nfe2l2 (ENSMSIG00000005673)
Ryukyu mouse	MODERN SPECIES	11	Cdca7 (MGP_CAROLIEiJ_G0023652) #7	Sp3 (MGP_CAROLIEiJ_G0023653) #8	MGP_CAROLIEiJ_G0023654	Ola1 (MGP_CAROLIEiJ_G0023655) #9	Sp9 (MGP_CAROLIEiJ_G0023656) #10	Cir1 (MGP_CAROLIEiJ_G0023657) #11	Scrn3 (MGP_CAROLIEiJ_G0023658) #12	Gpr155 (MGP_CAROLIEiJ_G0023659) #13	Wipf1 (MGP_CAROLIEiJ_G0023660) #14	Chrna1 (MGP_CAROLIEiJ_G0023661) #15	Chn1 (MGP_CAROLIEiJ_G0023662) #16	Atf2 (MGP_CAROLIEiJ_G0023663) #17	Atp5g3 (MGP_CAROLIEiJ_G0023664) #18	Lnpk (MGP_CAROLIEiJ_G0023665) #19	Evx2 (MGP_CAROLIEiJ_G0023666) #21	Hoxd13 (MGP_CAROLIEiJ_G0023667) #22	Hoxd12 (MGP_CAROLIEiJ_G0023668) #23	Hoxd11 (MGP_CAROLIEiJ_G0023669) #24	Hoxd10 (MGP_CAROLIEiJ_G0023670) #25	Hoxd9 (MGP_CAROLIEiJ_G0023671) #26	Hoxd8 (MGP_CAROLIEiJ_G0023672) #27	Hoxd3 (MGP_CAROLIEiJ_G0023673) #29	Hoxd4 (MGP_CAROLIEiJ_G0023674) #28	MGP_CAROLIEiJ_G0023675 #28	Hoxd1 (MGP_CAROLIEiJ_G0023676) #31	Mtx2 (MGP_CAROLIEiJ_G0023677)	MGP_CAROLIEiJ_G0023678	Nfe2l2 (MGP_CAROLIEiJ_G0023679)	Agps (MGP_CAROLIEiJ_G0023680)	MGP_CAROLIEiJ_G0023681	MGP_CAROLIEiJ_G0023682
Shrew mouse	MODERN SPECIES	16	Cdca7 (MGP_PahariEiJ_G0025104) #7	Sp3 (MGP_PahariEiJ_G0025105) #8	MGP_PahariEiJ_G0025106	Ola1 (MGP_PahariEiJ_G0025107) #9	Sp9 (MGP_PahariEiJ_G0025108) #10	MGP_PahariEiJ_G0025109 #11	Scrn3 (MGP_PahariEiJ_G0025110) #12	Gpr155 (MGP_PahariEiJ_G0025111) #13	Wipf1 (MGP_PahariEiJ_G0025112) #14	Chrna1 (MGP_PahariEiJ_G0025113) #15	MGP_PahariEiJ_G0025114 #16	Atf2 (MGP_PahariEiJ_G0025115) #17	Atp5g3 (MGP_PahariEiJ_G0025116) #18	Lnpk (MGP_PahariEiJ_G0025117) #19	Evx2 (MGP_PahariEiJ_G0025118) #21	Hoxd13 (MGP_PahariEiJ_G0025119) #22	Hoxd12 (MGP_PahariEiJ_G0025120) #23	Hoxd11 (MGP_PahariEiJ_G0025121) #24	Hoxd10 (MGP_PahariEiJ_G0025122) #25	Hoxd9 (MGP_PahariEiJ_G0025123) #26	Hoxd8 (MGP_PahariEiJ_G0025124) #27	Hoxd3 (MGP_PahariEiJ_G0025125) #29	Hoxd4 (MGP_PahariEiJ_G0025126) #28	MGP_PahariEiJ_G0025127 #28	Hoxd1 (MGP_PahariEiJ_G0025128) #31	Mtx2 (MGP_PahariEiJ_G0025129)	Hnrnpa3 (MGP_PahariEiJ_G0025130)	Nfe2l2 (MGP_PahariEiJ_G0025131)	MGP_PahariEiJ_G0025132	MGP_PahariEiJ_G0025133	MGP_PahariEiJ_G0025134
Rat	MODERN SPECIES	13	Ola1 (ENSRNOG00000019047) #9	ENSRNOG00000032195	Sp9 (ENSRNOG00000028187) #10	Cir1 (ENSRNOG00000018719) #11	Scrn3 (ENSRNOG00000018657) #12	Gpr155 (ENSRNOG00000018485) #13	Wipf1 (ENSRNOG00000018406) #14	Rbx1-ps2 (ENSRNOG00000067031)	Chrna1 (ENSRNOG00000018286) #15	Chn1 (ENSRNOG00000017939) #16	ENSRNOG00000068403	Atf2 (ENSRNOG00000001597) #17	Atp5mc3 (ENSRNOG00000001596) #18	Lnpk (ENSRNOG00000001593) #19	Evx2 (ENSRNOG00000001589) #21	Hoxd13 (ENSRNOG00000001588) #22	Hoxd12 (ENSRNOG00000001587) #23	Hoxd11 (ENSRNOG00000069591) #24	Hoxd10 (ENSRNOG00000001581) #25	Hoxd9 (ENSRNOG00000001580) #26	Hoxd8 (ENSRNOG00000071108) #27	Hoxd4 (ENSRNOG00000001578) #28	AABR07052559.1 (ENSRNOG00000053144)	Hoxd3 (ENSRNOG00000001577) #29	Hoxd1 (ENSRNOG00000001572) #31	Mtx2 (ENSRNOG00000001559)	Hnrnpa3 (ENSRNOG00000052968)	Nfe2l2 (ENSRNOG00000001548)	ENSRNOG00000066660	Agps (ENSRNOG00000001547)	Ttc30b (ENSRNOG00000059460)
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b.p	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.y.b	ENSGT00390000010116.y.a.a	ENSGT00940000162151
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000156075.a.a	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000171387	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000154808.a.a	ENSGT00940000153147.m.a.a.a.b.a.b.p	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.y.b	ENSGT00390000010116.y.a.a
Golden Hamster	MODERN SPECIES	618	ENSMAUG00000020351	ENSMAUG00000001485	Ola1 (ENSMAUG00000019168) #9	Sp9 (ENSMAUG00000020520) #10	ENSMAUG00000019383 #11	Scrn3 (ENSMAUG00000020703) #12	Gpr155 (ENSMAUG00000019481) #13	ENSMAUG00000019796	Chrna1 (ENSMAUG00000017924) #15	Chn1 (ENSMAUG00000018455) #16	Atf2 (ENSMAUG00000018366) #17	Atp5g3 (ENSMAUG00000017685) #18	ENSMAUG00000020495	Lnpk (ENSMAUG00000018821) #19	Evx2 (ENSMAUG00000020383) #21	Hoxd13 (ENSMAUG00000017185) #22	Hoxd12 (ENSMAUG00000018416) #23	ENSMAUG00000020249 #24	Hoxd10 (ENSMAUG00000016731) #25	Hoxd9 (ENSMAUG00000018538) #26	Hoxd8 (ENSMAUG00000018092) #27	Hoxd4 (ENSMAUG00000018545) #28	Hoxd3 (ENSMAUG00000018318) #29	Hoxd1 (ENSMAUG00000018401) #31	Mtx2 (ENSMAUG00000017870)	ENSMAUG00000017462	Nfe2l2 (ENSMAUG00000017700)	Agps (ENSMAUG00000017317)	Pde11a (ENSMAUG00000021257)	Cyct (ENSMAUG00000016722)	Rbm45 (ENSMAUG00000016948)
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001003688	Ola1 (ENSCGRG00001001469) #9	Sp9 (ENSCGRG00001024896) #10	Cir1 (ENSCGRG00001015518) #11	Scrn3 (ENSCGRG00001014709) #12	Gpr155 (ENSCGRG00001014219) #13	ENSCGRG00001021853	Chrna1 (ENSCGRG00001020291) #15	ENSCGRG00001019803	Chn1 (ENSCGRG00001019152) #16	Atf2 (ENSCGRG00001015584) #17	Atp5g3 (ENSCGRG00001012041) #18	Lnpk (ENSCGRG00001011515) #19	ENSCGRG00001006802	Evx2 (ENSCGRG00001003649) #21	Hoxd13 (ENSCGRG00001001661) #22	Hoxd12 (ENSCGRG00001000877) #23	Hoxd11 (ENSCGRG00001010386) #24	Hoxd10 (ENSCGRG00001008302) #25	Hoxd9 (ENSCGRG00001005991) #26	Hoxd8 (ENSCGRG00001013130) #27	Hoxd4 (ENSCGRG00001012360) #28	Hoxd3 (ENSCGRG00001011863) #29	Hoxd1 (ENSCGRG00001011572) #31	ENSCGRG00001014512	Mtx2 (ENSCGRG00001014247)	ENSCGRG00001003235	ENSCGRG00001008592	Nfe2l2 (ENSCGRG00001005715)	Agps (ENSCGRG00001003863)	Ttc30b (ENSCGRG00001002157)
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b.p	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.y.b	ENSGT00390000010116.y.a.a	ENSGT00940000162151
Northern American deer mouse	MODERN SPECIES	17	Cdca7 (ENSPEMG00000022184) #7	Sp3 (ENSPEMG00000022766) #8	Ola1 (ENSPEMG00000021970) #9	Sp9 (ENSPEMG00000029035) #10	Cir1 (ENSPEMG00000022223) #11	Scrn3 (ENSPEMG00000022424) #12	Gpr155 (ENSPEMG00000022602) #13	Wipf1 (ENSPEMG00000013848) #14	Chrna1 (ENSPEMG00000012571) #15	Chn1 (ENSPEMG00000022535) #16	Atf2 (ENSPEMG00000021625) #17	Atp5g3 (ENSPEMG00000023766) #18	ENSPEMG00000008662	Lnpk (ENSPEMG00000017827) #19	Evx2 (ENSPEMG00000022145) #21	Hoxd13 (ENSPEMG00000022412) #22	Hoxd12 (ENSPEMG00000019240) #23	ENSPEMG00000018816 #24	Hoxd10 (ENSPEMG00000030445) #25	Hoxd9 (ENSPEMG00000006162) #26	ENSPEMG00000028623 #27	ENSPEMG00000029322	Hoxd4 (ENSPEMG00000024627) #28	Hoxd3 (ENSPEMG00000028862) #29	Hoxd1 (ENSPEMG00000021389) #31	Mtx2 (ENSPEMG00000022093)	Hnrnpa3 (ENSPEMG00000021885)	Nfe2l2 (ENSPEMG00000023181)	Agps (ENSPEMG00000010561)	ENSPEMG00000023662	Ttc30b (ENSPEMG00000001902)
Prairie vole	MODERN SPECIES	12	Cdca7 (ENSMOCG00000015927) #7	Sp3 (ENSMOCG00000022929) #8	ENSMOCG00000003269	ENSMOCG00000003125 #9	Sp9 (ENSMOCG00000019136) #10	Cir1 (ENSMOCG00000017545) #11	Scrn3 (ENSMOCG00000018966) #12	Gpr155 (ENSMOCG00000003950) #13	ENSMOCG00000014660	Chrna1 (ENSMOCG00000020367) #15	Chn1 (ENSMOCG00000005574) #16	Atf2 (ENSMOCG00000015301) #17	ENSMOCG00000012786 #18	Lnpk (ENSMOCG00000022345) #19	Evx2 (ENSMOCG00000010466) #21	Hoxd13 (ENSMOCG00000014618) #22	Hoxd12 (ENSMOCG00000018953) #23	Hoxd11 (ENSMOCG00000019226) #24	Hoxd10 (ENSMOCG00000006052) #25	Hoxd9 (ENSMOCG00000005870) #26	Hoxd8 (ENSMOCG00000022746) #27	Hoxd3 (ENSMOCG00000022552) #29	Hoxd4 (ENSMOCG00000013646) #28	Hoxd1 (ENSMOCG00000014086) #31	Mtx2 (ENSMOCG00000017110)	ENSMOCG00000019409	Nfe2l2 (ENSMOCG00000020760)	Agps (ENSMOCG00000017476)	Ttc30b (ENSMOCG00000001580)	ENSMOCG00000001098	Ttc30a2 (ENSMOCG00000002802)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1735	Cdca7 (ENSNGAG00000005943) #7	ENSNGAG00000011265 #8	ENSNGAG00000012551	Ola1 (ENSNGAG00000017639) #9	Sp9 (ENSNGAG00000002858) #10	Cir1 (ENSNGAG00000023091) #11	Scrn3 (ENSNGAG00000008783) #12	Gpr155 (ENSNGAG00000019246) #13	ENSNGAG00000022478 #14	Chrna1 (ENSNGAG00000023534) #15	Chn1 (ENSNGAG00000021893) #16	Atf2 (ENSNGAG00000003870) #17	Atp5g3 (ENSNGAG00000004748) #18	Lnpk (ENSNGAG00000023466) #19	Evx2 (ENSNGAG00000023877) #21	Hoxd13 (ENSNGAG00000023727) #22	Hoxd12 (ENSNGAG00000023455) #23	Hoxd11 (ENSNGAG00000023438) #24	Hoxd10 (ENSNGAG00000023868) #25	Hoxd9 (ENSNGAG00000011105) #26	Hoxd8 (ENSNGAG00000011799) #27	Hoxd4 (ENSNGAG00000020270) #28	Hoxd3 (ENSNGAG00000021055) #29	Hoxd1 (ENSNGAG00000021714) #31	Mtx2 (ENSNGAG00000020555)	ENSNGAG00000021745	Nfe2l2 (ENSNGAG00000022809)	Agps (ENSNGAG00000020263)	ENSNGAG00000022555	Pde11a (ENSNGAG00000023493)	Cyct (ENSNGAG00000023547)
Lesser Egyptian jerboa	MODERN SPECIES	75	ENSJJAG00000016192	Cdca7 (ENSJJAG00000014387) #7	Sp3 (ENSJJAG00000011138) #8	ENSJJAG00000022958 #9	Sp9 (ENSJJAG00000020056) #10	Cir1 (ENSJJAG00000010849) #11	Scrn3 (ENSJJAG00000021027) #12	Chrna1 (ENSJJAG00000018710) #15	ENSJJAG00000014124	Chn1 (ENSJJAG00000015001) #16	Atf2 (ENSJJAG00000015836) #17	Atp5g3 (ENSJJAG00000022403) #18	ENSJJAG00000013766	Lnpk (ENSJJAG00000011710) #19	Evx2 (ENSJJAG00000017484) #21	Hoxd13 (ENSJJAG00000016388) #22	Hoxd12 (ENSJJAG00000016261) #23	Hoxd11 (ENSJJAG00000012344) #24	Hoxd10 (ENSJJAG00000011932) #25	Hoxd1 (ENSJJAG00000019059) #31	ENSJJAG00000019952	ENSJJAG00000013228	ENSJJAG00000000149	Nfe2l2 (ENSJJAG00000019899)	Agps (ENSJJAG00000016720)	ENSJJAG00000014867	ENSJJAG00000012087	Pde11a (ENSJJAG00000018583)	Rbm45 (ENSJJAG00000001312)	Osbpl6 (ENSJJAG00000017863)	Prkra (ENSJJAG00000013031)
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.xb #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Marmotini	ANCESTRAL SPECIES	2	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.xb.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.gb	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.xb.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.gb	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Arctic ground squirrel	MODERN SPECIES	323									WIPF1 (ENSUPAG00010020649) #14	CHRNA1 (ENSUPAG00010020641) #15	CHN1 (ENSUPAG00010020575) #16	ATF2 (ENSUPAG00010020491) #17	ENSUPAG00010020485 #18	LNPK (ENSUPAG00010020452) #19	EVX2 (ENSUPAG00010020442) #21	HOXD13 (ENSUPAG00010020441) #22	HOXD12 (ENSUPAG00010020440) #23	HOXD11 (ENSUPAG00010020439) #24	HOXD10 (ENSUPAG00010020434) #25	HOXD9 (ENSUPAG00010020431) #26	HOXD8 (ENSUPAG00010020425) #27	HOXD4 (ENSUPAG00010020416) #28	HOXD3 (ENSUPAG00010020410) #29	HOXD1 (ENSUPAG00010020407) #31	ENSUPAG00010020400	MTX2 (ENSUPAG00010020394)
Squirrel	MODERN SPECIES	109	RAPGEF4 (ENSSTOG00000001706)	MAP3K20 (ENSSTOG00000022529)	ENSSTOG00000009026 #7	SP3 (ENSSTOG00000023955) #8	OLA1 (ENSSTOG00000015547) #9	CIR1 (ENSSTOG00000001233) #11	SCRN3 (ENSSTOG00000001236) #12	GPR155 (ENSSTOG00000001239) #13	ENSSTOG00000004271 #14	CHRNA1 (ENSSTOG00000004281) #15	CHN1 (ENSSTOG00000004301) #16	ATF2 (ENSSTOG00000014079) #17	ENSSTOG00000013572 #18	LNPK (ENSSTOG00000014498) #19	EVX2 (ENSSTOG00000014512) #21	HOXD13 (ENSSTOG00000004117) #22	HOXD12 (ENSSTOG00000004918) #23	HOXD10 (ENSSTOG00000003935) #25	HOXD9 (ENSSTOG00000026761) #26	ENSSTOG00000023453 #27	HOXD4 (ENSSTOG00000029055) #28	HOXD3 (ENSSTOG00000014680) #29	HOXD1 (ENSSTOG00000012230) #31	MTX2 (ENSSTOG00000014688)	ENSSTOG00000030884	HNRNPA3 (ENSSTOG00000025125)	NFE2L2 (ENSSTOG00000000313)	AGPS (ENSSTOG00000012623)	ENSSTOG00000003267	PDE11A (ENSSTOG00000012639)	ENSSTOG00000008853
Alpin marmot	MODERN SPECIES	5	CDCA7 (ENSMMMG00000023690) #7	SP3 (ENSMMMG00000023692) #8	OLA1 (ENSMMMG00000023695) #9	CIR1 (ENSMMMG00000023697) #11	ENSMMMG00000023700 #12	ENSMMMG00000023702 #12	GPR155 (ENSMMMG00000023705) #13	ENSMMMG00000023714	WIPF1 (ENSMMMG00000023716) #14	CHRNA1 (ENSMMMG00000023717) #15	CHN1 (ENSMMMG00000023718) #16	ENSMMMG00000023730	ATF2 (ENSMMMG00000023733) #17	ENSMMMG00000023748 #18	LNPK (ENSMMMG00000023755) #19	HOXD13 (ENSMMMG00000023759) #22	HOXD12 (ENSMMMG00000023760) #23	ENSMMMG00000023762 #24	HOXD10 (ENSMMMG00000023763) #25	HOXD9 (ENSMMMG00000023764) #26	ENSMMMG00000023765 #27	HOXD4 (ENSMMMG00000023767) #28	HOXD3 (ENSMMMG00000023768) #29	MTX2 (ENSMMMG00000023772)	NFE2L2 (ENSMMMG00000023776)	AGPS (ENSMMMG00000023778)
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005002549	OLA1 (ENSSVLG00005002579) #9	ENSSVLG00005002643	SP9 (ENSSVLG00005002657) #10	CIR1 (ENSSVLG00005002678) #11	SCRN3 (ENSSVLG00005002703) #12	GPR155 (ENSSVLG00005002750) #13	WIPF1 (ENSSVLG00005002786) #14	CHRNA1 (ENSSVLG00005002856) #15	CHN1 (ENSSVLG00005003041) #16	ENSSVLG00005003279 #17	ENSSVLG00005003430 #18	ENSSVLG00005003466	LNPK (ENSSVLG00005003500) #19	EVX2 (ENSSVLG00005003539) #21	HOXD13 (ENSSVLG00005003554) #22	HOXD12 (ENSSVLG00005003565) #23	HOXD11 (ENSSVLG00005003581) #24	HOXD10 (ENSSVLG00005003599) #25	HOXD9 (ENSSVLG00005003618) #26	HOXD8 (ENSSVLG00005003645) #27	HOXD4 (ENSSVLG00005003676) #28	HOXD1 (ENSSVLG00005003762) #31	MTX2 (ENSSVLG00005003812)	ENSSVLG00005003881	ENSSVLG00005003903	AGPS (ENSSVLG00005003959)	ENSSVLG00005003996	ENSSVLG00005004006	ENSSVLG00005004018	PDE11A (ENSSVLG00005004050)
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296.t #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00680000100059
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296.t #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00680000100059
Guinea pig	MODERN SPECIES	3	MAP3K20 (ENSCPOG00000040705)	CDCA7 (ENSCPOG00000011784) #7	SP3 (ENSCPOG00000002942) #8	OLA1 (ENSCPOG00000031110) #9	SP9 (ENSCPOG00000032651) #10	CIR1 (ENSCPOG00000010275) #11	SCRN3 (ENSCPOG00000010281) #12	GPR155 (ENSCPOG00000010286) #13	ENSCPOG00000034131 #14	CHRNA1 (ENSCPOG00000000036) #15	ENSCPOG00000002789 #16	ATF2 (ENSCPOG00000004637) #17	ATP5MC3 (ENSCPOG00000040161) #18	LNPK (ENSCPOG00000010971) #19	EVX2 (ENSCPOG00000006711) #21	HOXD13 (ENSCPOG00000006722) #22	HOXD12 (ENSCPOG00000005496) #23	ENSCPOG00000019766 #24	HOXD10 (ENSCPOG00000011368) #25	HOXD9 (ENSCPOG00000015006) #26	HOXD8 (ENSCPOG00000015005) #27	HOXD4 (ENSCPOG00000036552) #28	HOXD3 (ENSCPOG00000034932) #29	HOXD1 (ENSCPOG00000005509) #31	MTX2 (ENSCPOG00000011099)	ENSCPOG00000027250	ENSCPOG00000004251	NFE2L2 (ENSCPOG00000031261)	AGPS (ENSCPOG00000000679)	ENSCPOG00000000681	PDE11A (ENSCPOG00000000682)
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296.t #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00680000100059
Degu	MODERN SPECIES	106	SP9 (ENSODEG00000009569) #10	CIR1 (ENSODEG00000009325) #11	ENSODEG00000009961 #12	GPR155 (ENSODEG00000009263) #13	ENSODEG00000008878 #14	ENSODEG00000008975 #14	ENSODEG00000019598	CHRNA1 (ENSODEG00000010458) #15	CHN1 (ENSODEG00000008560) #16	ATF2 (ENSODEG00000010947) #17	ENSODEG00000010951 #18	ENSODEG00000010385	LNPK (ENSODEG00000010046) #19	ENSODEG00000008992	EVX2 (ENSODEG00000010771) #21	HOXD13 (ENSODEG00000008793) #22	HOXD12 (ENSODEG00000008376) #23	ENSODEG00000010934 #24	HOXD10 (ENSODEG00000010382) #25	HOXD9 (ENSODEG00000008626) #26	ENSODEG00000010496 #27	HOXD4 (ENSODEG00000010297) #28	HOXD3 (ENSODEG00000009722) #29	HOXD1 (ENSODEG00000008961) #31	ENSODEG00000008879	MTX2 (ENSODEG00000008062)	ENSODEG00000009697	ENSODEG00000009265	NFE2L2 (ENSODEG00000010043)	AGPS (ENSODEG00000008272)	ENSODEG00000020058
Long-tailed chinchilla	MODERN SPECIES	110	PDLIM3 (ENSCLAG00000012689)	SORBS2 (ENSCLAG00000011644)	TLR3 (ENSCLAG00000012107)	FAM149A (ENSCLAG00000017064)	CYP4V2 (ENSCLAG00000016518)	KLKB1 (ENSCLAG00000016848)	F11 (ENSCLAG00000012318)	MTNR1A (ENSCLAG00000015269)	FAT1 (ENSCLAG00000013169)	ENSCLAG00000015923	ZFP42 (ENSCLAG00000011822)	TRIML2 (ENSCLAG00000011159)	TRIML1 (ENSCLAG00000014494)	LNPK (ENSCLAG00000015033) #19	EVX2 (ENSCLAG00000014389) #21	HOXD13 (ENSCLAG00000013095) #22	HOXD12 (ENSCLAG00000013058) #23	ENSCLAG00000012563 #24	HOXD10 (ENSCLAG00000012482) #25	HOXD9 (ENSCLAG00000012447) #26	ENSCLAG00000011108 #27	HOXD4 (ENSCLAG00000014461) #28	ENSCLAG00000013605 #29	HOXD1 (ENSCLAG00000012505) #31	MTX2 (ENSCLAG00000011598)	ENSCLAG00000011088	HNRNPA3 (ENSCLAG00000012855)	NFE2L2 (ENSCLAG00000013122)	ENSCLAG00000012626	ENSCLAG00000013627	AGPS (ENSCLAG00000013279)
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000046967	ENSHGLG00000040018	SP9 (ENSHGLG00000007443) #10	CIR1 (ENSHGLG00000008097) #11	SCRN3 (ENSHGLG00000010172) #12	GPR155 (ENSHGLG00000012529) #13	ENSHGLG00000036822 #14	ENSHGLG00000039411 #14	CHRNA1 (ENSHGLG00000015432) #15	ENSHGLG00000016114 #16	ENSHGLG00000018805 #17	Atp5mc3 (ENSHGLG00000033165) #18	ENSHGLG00000040802	LNPK (ENSHGLG00000004015) #19	EVX2 (ENSHGLG00000004218) #21	HOXD13 (ENSHGLG00000050884) #22	HOXD12 (ENSHGLG00000005403) #23	HOXD11 (ENSHGLG00000034527) #24	HOXD9 (ENSHGLG00000007185) #26	HOXD10 (ENSHGLG00000033462) #25	ENSHGLG00000003577 #27	HOXD4 (ENSHGLG00000037842) #28	HOXD3 (ENSHGLG00000003761) #29	HOXD1 (ENSHGLG00000004072) #31	MTX2 (ENSHGLG00000004177)	ENSHGLG00000012734	ENSHGLG00000046644	ENSHGLG00000036655	HNRNPA3 (ENSHGLG00000005451)	NFE2L2 (ENSHGLG00000006475)	AGPS (ENSHGLG00000007541)
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT01030000234646.B.a.a.b	ENSGT00940000156075.a.a	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000164264	ENSGT00940000162151
Rabbit	MODERN SPECIES	18	ENSOCUG00000030823	SP3 (ENSOCUG00000026678) #8	OLA1 (ENSOCUG00000003574) #9	ENSOCUG00000037146	CIR1 (ENSOCUG00000029298) #11	SCRN3 (ENSOCUG00000011499) #12	GPR155 (ENSOCUG00000003683) #13	ENSOCUG00000036607	ENSOCUG00000005696	CHRNA1 (ENSOCUG00000024814) #15	CHN1 (ENSOCUG00000008134) #16	ATF2 (ENSOCUG00000012156) #17	ATP5MC3 (ENSOCUG00000012164) #18	LNPK (ENSOCUG00000008962) #19	EVX2 (ENSOCUG00000032776) #21	HOXD13 (ENSOCUG00000029547) #22	HOXD12 (ENSOCUG00000002412) #23	HOXD11 (ENSOCUG00000013942) #24	HOXD10 (ENSOCUG00000008964) #25	HOXD9 (ENSOCUG00000023956) #26	ENSOCUG00000035940 #27	HOXD4 (ENSOCUG00000002413) #28	HOXD3 (ENSOCUG00000014119) #29	HOXD1 (ENSOCUG00000015582) #31	MTX2 (ENSOCUG00000008760)	ENSOCUG00000025666	ENSOCUG00000030456	ENSOCUG00000002743	NFE2L2 (ENSOCUG00000001009)	AGPS (ENSOCUG00000011521)	ENSOCUG00000029884
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000161457 #22
Hedgehog	MODERN SPECIES	2658																HOXD13 (ENSEEUG00000005384) #22
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00940000163262.a	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00940000163262.a	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00940000163262.a	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Microbat	MODERN SPECIES	942	ENSMLUG00000006601	CDCA7 (ENSMLUG00000006634) #7	SP3 (ENSMLUG00000006791) #8	ENSMLUG00000025196 #9	CIR1 (ENSMLUG00000013807) #11	SCRN3 (ENSMLUG00000013823) #12	GPR155 (ENSMLUG00000013828) #13	WIPF1 (ENSMLUG00000022385) #14	CHRNA1 (ENSMLUG00000015698) #15	CHN1 (ENSMLUG00000015709) #16	ATF2 (ENSMLUG00000015718) #17	ENSMLUG00000012822 #18	LNPK (ENSMLUG00000006972) #19	ENSMLUG00000022478	EVX2 (ENSMLUG00000006989) #21	HOXD13 (ENSMLUG00000006997) #22	HOXD12 (ENSMLUG00000007009) #23	HOXD11 (ENSMLUG00000007030) #24	HOXD10 (ENSMLUG00000007048) #25	HOXD8 (ENSMLUG00000028864) #27	HOXD4 (ENSMLUG00000012508) #28	HOXD3 (ENSMLUG00000012510) #29	ENSMLUG00000029447 #31	MTX2 (ENSMLUG00000015966)	ENSMLUG00000003906	NFE2L2 (ENSMLUG00000003909)	ENSMLUG00000025480	AGPS (ENSMLUG00000005113)	ENSMLUG00000005126	ENSMLUG00000005133	ENSMLUG00000028755
Greater horseshoe bat	MODERN SPECIES	26	CDCA7 (ENSRFEG00010001045) #7	SP3 (ENSRFEG00010000991) #8	OLA1 (ENSRFEG00010000935) #9	ENSRFEG00010000897	SP9 (ENSRFEG00010000885) #10	CIR1 (ENSRFEG00010000863) #11	SCRN3 (ENSRFEG00010000835) #12	GPR155 (ENSRFEG00010000805) #13	WIPF1 (ENSRFEG00010000762) #14	CHRNA1 (ENSRFEG00010000686) #15	CHN1 (ENSRFEG00010000595) #16	ATF2 (ENSRFEG00010000479) #17	ENSRFEG00010000353 #18	LNPK (ENSRFEG00010000270) #19	EVX2 (ENSRFEG00010000230) #21	HOXD13 (ENSRFEG00010022173) #22	HOXD12 (ENSRFEG00010022172) #23	HOXD11 (ENSRFEG00010022171) #24	HOXD10 (ENSRFEG00010022170) #25	HOXD9 (ENSRFEG00010022169) #26	HOXD8 (ENSRFEG00010022168) #27	HOXD4 (ENSRFEG00010022166) #28	HOXD3 (ENSRFEG00010022165) #29	HOXD1 (ENSRFEG00010022164) #31	MTX2 (ENSRFEG00010022163)	ENSRFEG00010022161	NFE2L2 (ENSRFEG00010022160)	ENSRFEG00010022158	ENSRFEG00010022157	ENSRFEG00010022156	PDE11A (ENSRFEG00010022154)
Megabat	MODERN SPECIES	1085														LNPK (ENSPVAG00000017411) #19	EVX2 (ENSPVAG00000017414) #21	HOXD13 (ENSPVAG00000017415) #22	HOXD12 (ENSPVAG00000017416) #23	HOXD11 (ENSPVAG00000017417) #24	HOXD10 (ENSPVAG00000017418) #25	HOXD8 (ENSPVAG00000017420) #27	HOXD3 (ENSPVAG00000017421) #29	HOXD1 (ENSPVAG00000017425) #31	MTX2 (ENSPVAG00000017426)
Equus	ANCESTRAL SPECIES	18	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00390000005569.x.a.a.b	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Donkey	MODERN SPECIES	24	CDCA7 (ENSEASG00005022615) #7	SP3 (ENSEASG00005022608) #8	OLA1 (ENSEASG00005022603) #9	SP9 (ENSEASG00005022600) #10	CIR1 (ENSEASG00005022598) #11	SCRN3 (ENSEASG00005022597) #12	GPR155 (ENSEASG00005022591) #13	WIPF1 (ENSEASG00005022583) #14	CHRNA1 (ENSEASG00005022581) #15	CHN1 (ENSEASG00005022579) #16	ATF2 (ENSEASG00005022575) #17	ATP5MC3 (ENSEASG00005022573) #18	LNPK (ENSEASG00005022567) #19	ENSEASG00005022564	EVX2 (ENSEASG00005022562) #21	HOXD13 (ENSEASG00005029242) #22	HOXD12 (ENSEASG00005022555) #23	HOXD11 (ENSEASG00005030904) #24	HOXD10 (ENSEASG00005022552) #25	HOXD9 (ENSEASG00005023994) #26	HOXD8 (ENSEASG00005033905) #27	HOXD4 (ENSEASG00005024806) #28	HOXD3 (ENSEASG00005022544) #29	HOXD1 (ENSEASG00005030887) #31	MTX2 (ENSEASG00005022537)	HNRNPA3 (ENSEASG00005022530)	NFE2L2 (ENSEASG00005028739)	ENSEASG00005026944	AGPS (ENSEASG00005022514)	ENSEASG00005028303	PDE11A (ENSEASG00005022489)
Horse	MODERN SPECIES	9	CDCA7 (ENSECAG00000011492) #7	SP3 (ENSECAG00000013930) #8	OLA1 (ENSECAG00000016353) #9	SP9 (ENSECAG00000028902) #10	CIR1 (ENSECAG00000006773) #11	SCRN3 (ENSECAG00000018530) #12	GPR155 (ENSECAG00000008471) #13	WIPF1 (ENSECAG00000015984)	CHRNA1 (ENSECAG00000019649) #15	CHN1 (ENSECAG00000008277) #16	ATF2 (ENSECAG00000018723) #17	ATP5MC3 (ENSECAG00000008514) #18	LNPK (ENSECAG00000008534) #19	ENSECAG00000043913	EVX2 (ENSECAG00000019796) #21	HOXD13 (ENSECAG00000020388) #22	HOXD11 (ENSECAG00000003045) #24	HOXD10 (ENSECAG00000020599) #25	HOXD9 (ENSECAG00000021845) #26	HOXD8 (ENSECAG00000021980) #27	HOXD4 (ENSECAG00000038429) #28	HOXD3 (ENSECAG00000022129) #29	HOXD1 (ENSECAG00000035437) #31	MTX2 (ENSECAG00000022464)	HNRNPA3 (ENSECAG00000059976)	NFE2L2 (ENSECAG00000005675)	AGPS (ENSECAG00000008695)	ENSECAG00000051775	ENSECAG00000000927	PDE11A (ENSECAG00000004445)	ENSECAG00000057854
Carnivora	ANCESTRAL SPECIES	17	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Felidae	ANCESTRAL SPECIES	15	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b.mb.a #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.vb	ENSGT00390000010116.wb	ENSGT00940000162151
Cat	MODERN SPECIES	239	CDCA7 (ENSFCAG00000005476) #7	SP3 (ENSFCAG00000030033) #8	ENSFCAG00000036661 #9	SP9 (ENSFCAG00000044908) #10	CIR1 (ENSFCAG00000022845) #11	SCRN3 (ENSFCAG00000022042) #12	GPR155 (ENSFCAG00000000439) #13	ENSFCAG00000034843	WIPF1 (ENSFCAG00000014400) #14	CHRNA1 (ENSFCAG00000014103) #15	CHN1 (ENSFCAG00000039893) #16	ATF2 (ENSFCAG00000027595) #17	ATP5MC3 (ENSFCAG00000012719) #18	LNPK (ENSFCAG00000033171) #19	EVX2 (ENSFCAG00000023892) #21	HOXD13 (ENSFCAG00000030694) #22	HOXD12 (ENSFCAG00000044671) #23	HOXD11 (ENSFCAG00000030594) #24	HOXD10 (ENSFCAG00000006264) #25	HOXD9 (ENSFCAG00000035038) #26	HOXD8 (ENSFCAG00000034788) #27	HOXD4 (ENSFCAG00000045772) #28	HOXD3 (ENSFCAG00000022371) #29	HOXD1 (ENSFCAG00000042171) #31	MTX2 (ENSFCAG00000030099)	HNRNPA3 (ENSFCAG00000012146)	NFE2L2 (ENSFCAG00000012147)	AGPS (ENSFCAG00000022316)	ENSFCAG00000048732	ENSFCAG00000049217	PDE11A (ENSFCAG00000022207)
Panthera	ANCESTRAL SPECIES	9	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b.mb.a #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.vb	ENSGT00390000010116.wb	ENSGT00940000162151
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b.mb.a #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.vb	ENSGT00390000010116.wb	ENSGT00940000162151
leopard	MODERN SPECIES	1	SP3 (ENSPPRG00000004464) #8	ENSPPRG00000004311	ENSPPRG00000004233 #9	SP9 (ENSPPRG00000003658) #10	CIR1 (ENSPPRG00000003553) #11	SCRN3 (ENSPPRG00000003477) #12	GPR155 (ENSPPRG00000003324) #13	ENSPPRG00000002818	WIPF1 (ENSPPRG00000002779) #14	CHRNA1 (ENSPPRG00000002357) #15	CHN1 (ENSPPRG00000001854) #16	ATF2 (ENSPPRG00000001271) #17	ATP5MC3 (ENSPPRG00000000490) #18	LNPK (ENSPPRG00000000436) #19	EVX2 (ENSPPRG00000000389) #21	HOXD13 (ENSPPRG00000000349) #22	HOXD12 (ENSPPRG00000000300) #23	HOXD11 (ENSPPRG00000000168) #24	HOXD10 (ENSPPRG00000000139) #25	HOXD9 (ENSPPRG00000000084) #26	HOXD8 (ENSPPRG00000022672) #27	HOXD4 (ENSPPRG00000022845) #28	HOXD3 (ENSPPRG00000022847) #29	HOXD1 (ENSPPRG00000023009) #31	MTX2 (ENSPPRG00000022475)	ENSPPRG00000022322	NFE2L2 (ENSPPRG00000020872)	AGPS (ENSPPRG00000020328)	ENSPPRG00000021116	ENSPPRG00000021101	PDE11A (ENSPPRG00000019135)
lion	MODERN SPECIES	8	ENSPLOG00000022450 #9	SP9 (ENSPLOG00000022443) #10	ENSPLOG00000022440	CIR1 (ENSPLOG00000022436) #11	SCRN3 (ENSPLOG00000022426) #12	GPR155 (ENSPLOG00000022420) #13	ENSPLOG00000022404	ENSPLOG00000022399	WIPF1 (ENSPLOG00000022385) #14	CHRNA1 (ENSPLOG00000022353) #15	CHN1 (ENSPLOG00000022311) #16	ATF2 (ENSPLOG00000022276) #17	ATP5MC3 (ENSPLOG00000022249) #18	LNPK (ENSPLOG00000022229) #19	EVX2 (ENSPLOG00000022219) #21	HOXD13 (ENSPLOG00000022213) #22	HOXD12 (ENSPLOG00000022207) #23	HOXD11 (ENSPLOG00000022202) #24	HOXD10 (ENSPLOG00000022198) #25	HOXD9 (ENSPLOG00000022195) #26	HOXD8 (ENSPLOG00000022192) #27	HOXD4 (ENSPLOG00000022180) #28	HOXD3 (ENSPLOG00000022176) #29	HOXD1 (ENSPLOG00000022171) #31	MTX2 (ENSPLOG00000022148)	ENSPLOG00000022134	NFE2L2 (ENSPLOG00000022123)	AGPS (ENSPLOG00000022055)	ENSPLOG00000022046	ENSPLOG00000022045	PDE11A (ENSPLOG00000022012)
Tiger	MODERN SPECIES	43	RAPGEF4 (ENSPTIG00000021652)	ENSPTIG00000019347	CDCA7 (ENSPTIG00000016039) #7	SP3 (ENSPTIG00000014294) #8	ENSPTIG00000011872 #9	ENSPTIG00000009967	CIR1 (ENSPTIG00000008708) #11	SCRN3 (ENSPTIG00000003437) #12	GPR155 (ENSPTIG00000018965) #13	WIPF1 (ENSPTIG00000016801) #14	CHRNA1 (ENSPTIG00000012090) #15	CHN1 (ENSPTIG00000006887) #16	ATF2 (ENSPTIG00000017517) #17	ATP5MC3 (ENSPTIG00000016881) #18	LNPK (ENSPTIG00000016532) #19	HOXD13 (ENSPTIG00000016212) #22	HOXD10 (ENSPTIG00000015771) #25	ENSPTIG00000006835 #26	ENSPTIG00000015581 #27	HOXD4 (ENSPTIG00000015199) #28	ENSPTIG00000013485	MTX2 (ENSPTIG00000011503)	HNRNPA3 (ENSPTIG00000008598)	NFE2L2 (ENSPTIG00000007874)
Caniformia	ANCESTRAL SPECIES	14	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Ursidae	ANCESTRAL SPECIES	7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00390000005254.i.a.b	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.m.b #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.b	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151
Ursus	ANCESTRAL SPECIES	4	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00390000005254.i.a.b	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.m.b #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
American black bear	MODERN SPECIES	3042															EVX2 (ENSUAMG00000025680) #21	HOXD13 (ENSUAMG00000025683) #22	HOXD12 (ENSUAMG00000025684) #23	HOXD11 (ENSUAMG00000025686) #24	HOXD10 (ENSUAMG00000025688) #25	HOXD9 (ENSUAMG00000025690) #26	HOXD8 (ENSUAMG00000025693) #27	HOXD4 (ENSUAMG00000025697) #28	HOXD3 (ENSUAMG00000025698) #29	HOXD1 (ENSUAMG00000025700) #31
Giant Panda	MODERN SPECIES	11	ENSAMEG00000024507	OLA1 (ENSAMEG00000012204) #9	ENSAMEG00000025792	SP9 (ENSAMEG00000028382) #10	CIR1 (ENSAMEG00000012211) #11	SCRN3 (ENSAMEG00000012230) #12	GPR155 (ENSAMEG00000012251) #13	ENSAMEG00000027164	WIPF1 (ENSAMEG00000012269) #14	CHRNA1 (ENSAMEG00000012277) #15	CHN1 (ENSAMEG00000012304) #16	ATF2 (ENSAMEG00000012333) #17	ATP5MC3 (ENSAMEG00000012367) #18	LNPK (ENSAMEG00000001869) #19	EVX2 (ENSAMEG00000001868) #21	HOXD13 (ENSAMEG00000001865) #22	HOXD12 (ENSAMEG00000023609) #23	ENSAMEG00000025193 #24	HOXD10 (ENSAMEG00000001849) #25	HOXD9 (ENSAMEG00000029987) #26	HOXD8 (ENSAMEG00000023565) #27	HOXD4 (ENSAMEG00000025663) #28	HOXD3 (ENSAMEG00000026957) #29	HOXD1 (ENSAMEG00000028345) #31	MTX2 (ENSAMEG00000001799)	ENSAMEG00000019906	HNRNPA3 (ENSAMEG00000011920)	NFE2L2 (ENSAMEG00000011937)	AGPS (ENSAMEG00000011950)	PDE11A (ENSAMEG00000000902)	ENSAMEG00000023664
Mustelinae	ANCESTRAL SPECIES	21	ENSGT00940000163262.a	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Ferret	MODERN SPECIES	359	SP3 (ENSMPUG00000013903) #8	OLA1 (ENSMPUG00000013906) #9	SP9 (ENSMPUG00000013931) #10	ENSMPUG00000013934	ENSMPUG00000013940	ENSMPUG00000013943 #11	SCRN3 (ENSMPUG00000013961) #12	GPR155 (ENSMPUG00000013963) #13	ENSMPUG00000013967	CHRNA1 (ENSMPUG00000013974) #15	CHN1 (ENSMPUG00000013977) #16	ATF2 (ENSMPUG00000013983) #17	ATP5MC3 (ENSMPUG00000013986) #18	LNPK (ENSMPUG00000014007) #19	EVX2 (ENSMPUG00000014012) #21	HOXD13 (ENSMPUG00000014022) #22	HOXD12 (ENSMPUG00000014025) #23	HOXD11 (ENSMPUG00000014029) #24	HOXD10 (ENSMPUG00000014049) #25	HOXD9 (ENSMPUG00000014053) #26	ENSMPUG00000014060 #27	ENSMPUG00000014067	HOXD4 (ENSMPUG00000014070) #28	HOXD3 (ENSMPUG00000014072) #29	ENSMPUG00000014080	HOXD1 (ENSMPUG00000014084) #31	ENSMPUG00000014088	MTX2 (ENSMPUG00000014094)	ENSMPUG00000014101	ENSMPUG00000014103	ENSMPUG00000014168
American mink	MODERN SPECIES	222														LNPK (ENSNVIG00000007208) #19	EVX2 (ENSNVIG00000007198) #21	HOXD13 (ENSNVIG00000007186) #22	HOXD12 (ENSNVIG00000007175) #23	ENSNVIG00000007170 #24	HOXD10 (ENSNVIG00000007162) #25	HOXD9 (ENSNVIG00000007158) #26	ENSNVIG00000007149 #27	HOXD4 (ENSNVIG00000007138) #28	HOXD3 (ENSNVIG00000007128) #29	HOXD1 (ENSNVIG00000007113) #31	MTX2 (ENSNVIG00000007075)	HNRNPA3 (ENSNVIG00000007022)	NFE2L2 (ENSNVIG00000006995)	AGPS (ENSNVIG00000006950)	ENSNVIG00000006929	PDE11A (ENSNVIG00000006854)	ENSNVIG00000006839
Canidae	ANCESTRAL SPECIES	45	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a.g.b #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.i #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.tb	ENSGT00390000010116.ub	ENSGT00940000162151
Canis_lupus	ANCESTRAL SPECIES	39	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000147479.a.b.b	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a.g.b #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.i #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.tb	ENSGT00390000010116.ub	ENSGT00940000162151
Dog	MODERN SPECIES	29	SP3 (ENSCAFG00845029530) #8	OLA1 (ENSCAFG00845029594) #9	SP9 (ENSCAFG00845029658) #10	CIR1 (ENSCAFG00845015697) #11	SCRN3 (ENSCAFG00845015754) #12	GPR155 (ENSCAFG00845015821) #13	ENSCAFG00845015883	WIPF1 (ENSCAFG00845016036) #14	CHRNA1 (ENSCAFG00845016336) #15	CHN1 (ENSCAFG00845017147) #16	ATF2 (ENSCAFG00845017708) #17	ATP5MC3 (ENSCAFG00845018248) #18	ENSCAFG00845018368	LNPK (ENSCAFG00845018510) #19	EVX2 (ENSCAFG00845018704) #21	HOXD13 (ENSCAFG00845018741) #22	HOXD12 (ENSCAFG00845018775) #23	ENSCAFG00845018802 #24	HOXD9 (ENSCAFG00845018856) #26	HOXD10 (ENSCAFG00845019028) #25	HOXD4 (ENSCAFG00845019072) #28	HOXD3 (ENSCAFG00845019275) #29	HOXD1 (ENSCAFG00845019313) #31	MTX2 (ENSCAFG00845019381)	HNRNPA3 (ENSCAFG00845019864)	NFE2L2 (ENSCAFG00845020022)	AGPS (ENSCAFG00845020190)	TTC30A (ENSCAFG00845020493)	PDE11A (ENSCAFG00845020545)	ENSCAFG00845020768	RBM45 (ENSCAFG00845020808)
Dingo	MODERN SPECIES	339	SP9 (ENSCAFG00020005867) #10	CIR1 (ENSCAFG00020005869) #11	SCRN3 (ENSCAFG00020005876) #12	GPR155 (ENSCAFG00020005897) #13	ENSCAFG00020006068	WIPF1 (ENSCAFG00020006074) #14	ENSCAFG00020006077 #14	CHRNA1 (ENSCAFG00020006081) #15	ENSCAFG00020006110 #16	ENSCAFG00020006118 #16	ATF2 (ENSCAFG00020006131) #17	ENSCAFG00020006151 #18	ENSCAFG00020006176	LNPK (ENSCAFG00020006192) #19	EVX2 (ENSCAFG00020006206) #21	HOXD13 (ENSCAFG00020006212) #22	HOXD12 (ENSCAFG00020006216) #23	HOXD9 (ENSCAFG00020006227) #26	HOXD11 (ENSCAFG00020006229) #24	HOXD10 (ENSCAFG00020006239) #25	HOXD8 (ENSCAFG00020006244) #27	HOXD4 (ENSCAFG00020006256) #28	HOXD3 (ENSCAFG00020006263) #29	HOXD1 (ENSCAFG00020006270) #31	MTX2 (ENSCAFG00020006273)	ENSCAFG00020006299	NFE2L2 (ENSCAFG00020006313)	AGPS (ENSCAFG00020006351)	ENSCAFG00020006961	ENSCAFG00020006963	PDE11A (ENSCAFG00020006966)
Red fox	MODERN SPECIES	15	ENSVVUG00000013736	SP3 (ENSVVUG00000013719) #8	ENSVVUG00000012991 #9	SP9 (ENSVVUG00000012965) #10	CIR1 (ENSVVUG00000012957) #11	SCRN3 (ENSVVUG00000012946) #12	GPR155 (ENSVVUG00000012912) #13	ENSVVUG00000012900	WIPF1 (ENSVVUG00000012885) #14	CHRNA1 (ENSVVUG00000012830) #15	CHN1 (ENSVVUG00000012819) #16	ATF2 (ENSVVUG00000012774) #17	ATP5MC3 (ENSVVUG00000012759) #18	LNPK (ENSVVUG00000012737) #19	EVX2 (ENSVVUG00000012735) #21	HOXD13 (ENSVVUG00000012734) #22	HOXD12 (ENSVVUG00000012731) #23	ENSVVUG00000012726 #24	HOXD10 (ENSVVUG00000012722) #25	ENSVVUG00000012717 #26	HOXD8 (ENSVVUG00000012714) #27	HOXD3 (ENSVVUG00000012700) #29	ENSVVUG00000012694	ENSVVUG00000012682	ENSVVUG00000012651	NFE2L2 (ENSVVUG00000012641)	ENSVVUG00000012637	ENSVVUG00000012634	AGPS (ENSVVUG00000010164)	ENSVVUG00000010109	PDE11A (ENSVVUG00000010094)
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Suina	ANCESTRAL SPECIES	3	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a.e #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00390000010491.kb.a	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059
Chacoan peccary	MODERN SPECIES	88	SP3 (ENSCWAG00000014875) #8	OLA1 (ENSCWAG00000015018) #9	ENSCWAG00000015225	SP9 (ENSCWAG00000015261) #10	CIR1 (ENSCWAG00000015285) #11	SCRN3 (ENSCWAG00000015324) #12	GPR155 (ENSCWAG00000015434) #13	WIPF1 (ENSCWAG00000000086) #14	CHRNA1 (ENSCWAG00000000173) #15	CHN1 (ENSCWAG00000000417) #16	ATF2 (ENSCWAG00000000507) #17	ENSCWAG00000000620 #18	LNPK (ENSCWAG00000000637) #19	ENSCWAG00000000677	EVX2 (ENSCWAG00000000686) #21	HOXD13 (ENSCWAG00000000704) #22	HOXD12 (ENSCWAG00000000716) #23	HOXD11 (ENSCWAG00000000728) #24	HOXD10 (ENSCWAG00000000737) #25	HOXD9 (ENSCWAG00000000750) #26	HOXD8 (ENSCWAG00000000766) #27	HOXD4 (ENSCWAG00000000799) #28	HOXD3 (ENSCWAG00000000815) #29	HOXD1 (ENSCWAG00000000831) #31	MTX2 (ENSCWAG00000000848)	HNRNPA3 (ENSCWAG00000000880)	NFE2L2 (ENSCWAG00000000916)	AGPS (ENSCWAG00000000957)	PDE11A (ENSCWAG00000001000)	ENSCWAG00000001084	RBM45 (ENSCWAG00000001104)
Pig	MODERN SPECIES	6	OLA1 (ENSSSCG00000015963) #9	ENSSSCG00000044710	SP9 (ENSSSCG00000036172) #10	CIR1 (ENSSSCG00000027516) #11	SCRN3 (ENSSSCG00000023297) #12	GPR155 (ENSSSCG00000015965) #13	ENSSSCG00000027348	CHRNA1 (ENSSSCG00000015969) #15	ENSSSCG00000022345 #16	ATF2 (ENSSSCG00000038076) #17	ATP5MC3 (ENSSSCG00000015973) #18	LNPK (ENSSSCG00000015976) #19	ENSSSCG00000039002	ENSSSCG00000053760	EVX2 (ENSSSCG00000023146) #21	HOXD13 (ENSSSCG00000057890) #22	HOXD12 (ENSSSCG00000015980) #23	HOXD11 (ENSSSCG00000034741) #24	HOXD10 (ENSSSCG00000015981) #25	HOXD9 (ENSSSCG00000015982) #26	HOXD8 (ENSSSCG00000040349) #27	HOXD4 (ENSSSCG00000015984) #28	HOXD3 (ENSSSCG00000015985) #29	HOXD1 (ENSSSCG00000015986) #31	MTX2 (ENSSSCG00000022222)	ENSSSCG00000015988	NFE2L2 (ENSSSCG00000015987)	AGPS (ENSSSCG00000023983)	PDE11A (ENSSSCG00000038903)	ENSSSCG00000047774	RBM45 (ENSSSCG00000015996)
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.fc.a	ENSGT00390000010116.fc.b	ENSGT00940000162151
Camelidae	ANCESTRAL SPECIES	16	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.fc.b	ENSGT00940000162151	ENSGT00680000100059	ENSGT00940000156791
Alpaca	MODERN SPECIES	285																HOXD13 (ENSVPAG00000010195) #22	HOXD12 (ENSVPAG00000010196) #23	HOXD10 (ENSVPAG00000010197) #25	HOXD9 (ENSVPAG00000010198) #26	MTX2 (ENSVPAG00000010200)
Arabian camel	MODERN SPECIES	31	MAP3K20 (ENSCDRG00005001310)	CDCA7 (ENSCDRG00005001429) #7	SP3 (ENSCDRG00005001722) #8	ENSCDRG00005001752 #9	SP9 (ENSCDRG00005001817) #10	CIR1 (ENSCDRG00005001834) #11	SCRN3 (ENSCDRG00005001860) #12	GPR155 (ENSCDRG00005001897) #13	ENSCDRG00005001936 #14	CHRNA1 (ENSCDRG00005001973) #15	CHN1 (ENSCDRG00005002091) #16	ATF2 (ENSCDRG00005002159) #17	ATP5MC3 (ENSCDRG00005002307) #18	LNPK (ENSCDRG00005002325) #19	EVX2 (ENSCDRG00005002358) #21	HOXD13 (ENSCDRG00005002411) #22	HOXD12 (ENSCDRG00005002432) #23	HOXD11 (ENSCDRG00005002440) #24	HOXD10 (ENSCDRG00005002456) #25	HOXD9 (ENSCDRG00005002467) #26	HOXD8 (ENSCDRG00005002477) #27	HOXD4 (ENSCDRG00005002497) #28	HOXD3 (ENSCDRG00005002512) #29	MTX2 (ENSCDRG00005002532)	HNRNPA3 (ENSCDRG00005002567)	NFE2L2 (ENSCDRG00005002588)	AGPS (ENSCDRG00005002612)	ENSCDRG00005002654	ENSCDRG00005002663	PDE11A (ENSCDRG00005002676)	RBM45 (ENSCDRG00005002693)
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.fc.a	ENSGT00390000010116.fc.b	ENSGT00940000162151
Cetacea	ANCESTRAL SPECIES	14	ENSGT00940000161352	ENSGT00940000155436.e #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135.j #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000171387	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.fc.a	ENSGT00390000010116.fc.b	ENSGT00940000162151
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00940000155436.e #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135.j #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.fc.a	ENSGT00390000010116.fc.b
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00940000155436.e #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135.j #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.fc.a	ENSGT00390000010116.fc.b
Dolphin	MODERN SPECIES	804														LNPK (ENSTTRG00000013765) #19	EVX2 (ENSTTRG00000013768) #21	HOXD13 (ENSTTRG00000013771) #22	HOXD12 (ENSTTRG00000013772) #23	HOXD9 (ENSTTRG00000013773) #26	HOXD8 (ENSTTRG00000013777) #27	HOXD4 (ENSTTRG00000013778) #28	HOXD3 (ENSTTRG00000013779) #29
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135.j #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000008142.t	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.fc.a	ENSGT00390000010116.fc.b	ENSGT00940000162151
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135.j #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000008142.t	ENSGT00950000182834.A.a.a.t	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.fc.a	ENSGT00390000010116.fc.b	ENSGT00940000162151
Narwhal	MODERN SPECIES	302	OLA1 (ENSMMNG00015008339) #9	SP9 (ENSMMNG00015008313) #10	CIR1 (ENSMMNG00015008295) #11	SCRN3 (ENSMMNG00015008267) #12	GPR155 (ENSMMNG00015008223) #13	ENSMMNG00015008159	ENSMMNG00015008133	CHRNA1 (ENSMMNG00015008057) #15	CHN1 (ENSMMNG00015007913) #16	ATF2 (ENSMMNG00015007777) #17	ATP5MC3 (ENSMMNG00015007729) #18	ENSMMNG00015007699	ENSMMNG00015007684	LNPK (ENSMMNG00015007647) #19	EVX2 (ENSMMNG00015007622) #21	HOXD13 (ENSMMNG00015007609) #22	HOXD12 (ENSMMNG00015007598) #23	ENSMMNG00015007589 #24	HOXD10 (ENSMMNG00015007571) #25	HOXD9 (ENSMMNG00015007556) #26	HOXD8 (ENSMMNG00015007526) #27	HOXD4 (ENSMMNG00015007477) #28	HOXD3 (ENSMMNG00015007460) #29	HOXD1 (ENSMMNG00015007440) #31	MTX2 (ENSMMNG00015007394)	ENSMMNG00015007339	NFE2L2 (ENSMMNG00015007306)	AGPS (ENSMMNG00015007255)	ENSMMNG00015007232	ENSMMNG00015007201	ENSMMNG00015014296
Beluga whale	MODERN SPECIES	84	OLA1 (ENSDLEG00000018856) #9	SP9 (ENSDLEG00000008102) #10	CIR1 (ENSDLEG00000008125) #11	SCRN3 (ENSDLEG00000008164) #12	GPR155 (ENSDLEG00000008209) #13	WIPF1 (ENSDLEG00000008289)	ENSDLEG00000008360	CHRNA1 (ENSDLEG00000008433) #15	CHN1 (ENSDLEG00000008654) #16	ATF2 (ENSDLEG00000008726) #17	ATP5G3 (ENSDLEG00000008800) #18	ENSDLEG00000008837	ENSDLEG00000008854	LNPK (ENSDLEG00000008885) #19	EVX2 (ENSDLEG00000008943) #21	HOXD13 (ENSDLEG00000009014) #22	HOXD12 (ENSDLEG00000009038) #23	ENSDLEG00000009052 #24	HOXD10 (ENSDLEG00000009076) #25	HOXD9 (ENSDLEG00000009091) #26	HOXD8 (ENSDLEG00000009104) #27	HOXD4 (ENSDLEG00000009166) #28	HOXD3 (ENSDLEG00000009171) #29	HOXD1 (ENSDLEG00000009181) #31	MTX2 (ENSDLEG00000009199)	ENSDLEG00000009227	NFE2L2 (ENSDLEG00000009266)	AGPS (ENSDLEG00000009335)	ENSDLEG00000009463	ENSDLEG00000009469	ENSDLEG00000009481
Vaquita	MODERN SPECIES	18	SP3 (ENSPSNG00000006849) #8	OLA1 (ENSPSNG00000006756) #9	SP9 (ENSPSNG00000006701) #10	CIR1 (ENSPSNG00000006675) #11	SCRN3 (ENSPSNG00000006611) #12	ENSPSNG00000006580 #13	ENSPSNG00000006539	CHRNA1 (ENSPSNG00000006481) #15	CHN1 (ENSPSNG00000006315) #16	ATF2 (ENSPSNG00000006111) #17	ATP5MC3 (ENSPSNG00000006024) #18	ENSPSNG00000005869	ENSPSNG00000005846	LNPK (ENSPSNG00000005786) #19	EVX2 (ENSPSNG00000005734) #21	HOXD13 (ENSPSNG00000005715) #22	HOXD12 (ENSPSNG00000005695) #23	HOXD11 (ENSPSNG00000005666) #24	HOXD10 (ENSPSNG00000005654) #25	HOXD9 (ENSPSNG00000005639) #26	HOXD8 (ENSPSNG00000005602) #27	HOXD4 (ENSPSNG00000005556) #28	HOXD3 (ENSPSNG00000005539) #29	HOXD1 (ENSPSNG00000005524) #31	MTX2 (ENSPSNG00000005488)	ENSPSNG00000005439	NFE2L2 (ENSPSNG00000005384)	AGPS (ENSPSNG00000005315)	ENSPSNG00000005284	ENSPSNG00000007902	PDE11A (ENSPSNG00000007618)
Sperm whale	MODERN SPECIES	11	SP3 (ENSPCTG00005005593) #8	ENSPCTG00005005615	OLA1 (ENSPCTG00005005654) #9	SP9 (ENSPCTG00005005728) #10	CIR1 (ENSPCTG00005005746) #11	SCRN3 (ENSPCTG00005005779) #12	GPR155 (ENSPCTG00005005831) #13	WIPF1 (ENSPCTG00005005895)	ENSPCTG00005005929	CHRNA1 (ENSPCTG00005005965) #15	CHN1 (ENSPCTG00005006263) #16	ATF2 (ENSPCTG00005007004) #17	ATP5MC3 (ENSPCTG00005007202) #18	LNPK (ENSPCTG00005007293) #19	EVX2 (ENSPCTG00005007330) #21	HOXD13 (ENSPCTG00005007354) #22	HOXD12 (ENSPCTG00005007367) #23	ENSPCTG00005007381 #24	HOXD10 (ENSPCTG00005007393) #25	HOXD9 (ENSPCTG00005007399) #26	HOXD8 (ENSPCTG00005007418) #27	HOXD4 (ENSPCTG00005007493) #28	HOXD3 (ENSPCTG00005007508) #29	HOXD1 (ENSPCTG00005007516) #31	MTX2 (ENSPCTG00005007528)	ENSPCTG00005003466	NFE2L2 (ENSPCTG00005003486)	AGPS (ENSPCTG00005003530)	ENSPCTG00005003590	ENSPCTG00005003599	PDE11A (ENSPCTG00005003616)
Blue whale	MODERN SPECIES	18	ENSBMSG00010021109 #7	SP3 (ENSBMSG00010021145) #8	OLA1 (ENSBMSG00010005447) #9	SP9 (ENSBMSG00010005500) #10	CIR1 (ENSBMSG00010005507) #11	SCRN3 (ENSBMSG00010005522) #12	GPR155 (ENSBMSG00010005540) #13	ENSBMSG00010005563	ENSBMSG00010005581	CHRNA1 (ENSBMSG00010005615) #15	CHN1 (ENSBMSG00010005726) #16	ATF2 (ENSBMSG00010005883) #17	ATP5MC3 (ENSBMSG00010005937) #18	LNPK (ENSBMSG00010005955) #19	EVX2 (ENSBMSG00010005974) #21	HOXD13 (ENSBMSG00010005980) #22	HOXD12 (ENSBMSG00010005987) #23	HOXD11 (ENSBMSG00010005993) #24	HOXD10 (ENSBMSG00010006002) #25	HOXD9 (ENSBMSG00010006014) #26	HOXD8 (ENSBMSG00010006022) #27	HOXD4 (ENSBMSG00010006036) #28	HOXD3 (ENSBMSG00010006046) #29	HOXD1 (ENSBMSG00010006055) #31	MTX2 (ENSBMSG00010006100)	ENSBMSG00010006149	NFE2L2 (ENSBMSG00010006157)	AGPS (ENSBMSG00010006175)	ENSBMSG00010006193	ENSBMSG00010006199	PDE11A (ENSBMSG00010006216)
Pecora	ANCESTRAL SPECIES	24	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.fc.a	ENSGT00390000010116.fc.b	ENSGT00940000162151
Yarkand deer	MODERN SPECIES	26	SP3 (ENSCHYG00000019030) #8	ENSCHYG00000018536 #9	SP9 (ENSCHYG00000018463) #10	CIR1 (ENSCHYG00000018323) #11	ENSCHYG00000018263 #12	GPR155 (ENSCHYG00000018083) #13	ENSCHYG00000017877	CHRNA1 (ENSCHYG00000017619) #15	ENSCHYG00000017575	CHN1 (ENSCHYG00000017015) #16	ATF2 (ENSCHYG00000016575) #17	ATP5MC3 (ENSCHYG00000016464) #18	ENSCHYG00000016417	ENSCHYG00000016391	LNPK (ENSCHYG00000016125) #19	HOXD13 (ENSCHYG00000015985) #22	HOXD12 (ENSCHYG00000015954) #23	ENSCHYG00000015846	HOXD10 (ENSCHYG00000015831) #25	HOXD9 (ENSCHYG00000015808) #26	HOXD8 (ENSCHYG00000015741) #27	HOXD4 (ENSCHYG00000015683) #28	HOXD3 (ENSCHYG00000015650) #29	HOXD1 (ENSCHYG00000015562) #31	MTX2 (ENSCHYG00000015392)	ENSCHYG00000015305	ENSCHYG00000015038	NFE2L2 (ENSCHYG00000024719)	AGPS (ENSCHYG00000024578)	ENSCHYG00000024559	ENSCHYG00000024550
Percora_a	ANCESTRAL SPECIES	5	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.fc.a	ENSGT00390000010116.fc.b	ENSGT00940000162151
Siberian musk deer	MODERN SPECIES	342										ENSMMSG00000008116	ENSMMSG00000008102 ##16	ATF2 (ENSMMSG00000007713) #17	ENSMMSG00000007642 #18	LNPK (ENSMMSG00000007582) #19	EVX2 (ENSMMSG00000007555) #21	HOXD13 (ENSMMSG00000007541) #22	HOXD12 (ENSMMSG00000007530) #23	HOXD11 (ENSMMSG00000007513) #24	HOXD10 (ENSMMSG00000007495) #25	HOXD9 (ENSMMSG00000007480) #26	HOXD8 (ENSMMSG00000007407) #27	HOXD4 (ENSMMSG00000007365) #28	HOXD3 (ENSMMSG00000007343) #29	HOXD1 (ENSMMSG00000007322) #31	MTX2 (ENSMMSG00000007226)	ENSMMSG00000007068	NFE2L2 (ENSMMSG00000006992)	ENSMMSG00000006963	AGPS (ENSMMSG00000006894)	ENSMMSG00000006854	ENSMMSG00000006819
Bovidae	ANCESTRAL SPECIES	8	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.fc.a	ENSGT00390000010116.fc.b	ENSGT00940000162151
Caprinae	ANCESTRAL SPECIES	5	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00510000046986.x.b.b.c	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT01010000228762	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.fc.a	ENSGT00390000010116.fc.b	ENSGT00940000162151
Rambouillet Sheep	MODERN SPECIES	11	OLA1 (ENSOARG00020001577) #9	SP9 (ENSOARG00020001556) #10	CIR1 (ENSOARG00020001547) #11	SCRN3 (ENSOARG00020001508) #12	GPR155 (ENSOARG00020001419) #13	ENSOARG00020001367	CHRNA1 (ENSOARG00020001273) #15	ENSOARG00020001229	ENSOARG00020001216	CHN1 (ENSOARG00020000831) #16	ATF2 (ENSOARG00020000583) #17	ATP5MC3 (ENSOARG00020000538) #18	LNPK (ENSOARG00020000416) #19	ENSOARG00020000394	EVX2 (ENSOARG00020000381) #21	HOXD13 (ENSOARG00020000373) #22	HOXD12 (ENSOARG00020000357) #23	hoxd11 (ENSOARG00020000346) #24	HOXD10 (ENSOARG00020000330) #25	HOXD9 (ENSOARG00020000321) #26	HOXD8 (ENSOARG00020000297) #27	HOXD4 (ENSOARG00020000275) #28	HOXD3 (ENSOARG00020000257) #29	HOXD1 (ENSOARG00020000237) #31	MTX2 (ENSOARG00020000188)	HNRNPA3 (ENSOARG00020000123)	NFE2L2 (ENSOARG00020022726)	AGPS (ENSOARG00020022410)	ENSOARG00020022373	ENSOARG00020022364	PDE11A (ENSOARG00020022115)
Goat	MODERN SPECIES	11	ENSCHIG00000021711	SP9 (ENSCHIG00000012561) #10	CIR1 (ENSCHIG00000023936) #11	SCRN3 (ENSCHIG00000010523) #12	GPR155 (ENSCHIG00000024827) #13	ENSCHIG00000009043	CHRNA1 (ENSCHIG00000018272) #15	CHN1 (ENSCHIG00000017514) #16	ENSCHIG00000012635	ATF2 (ENSCHIG00000011446) #17	ENSCHIG00000018041 #18	LNPK (ENSCHIG00000012313) #19	ENSCHIG00000025787	ENSCHIG00000004992	EVX2 (ENSCHIG00000026644) #21	HOXD13 (ENSCHIG00000009994) #22	HOXD12 (ENSCHIG00000014734) #23	HOXD11 (ENSCHIG00000026087) #24	HOXD10 (ENSCHIG00000011771) #25	HOXD9 (ENSCHIG00000023245) #26	HOXD8 (ENSCHIG00000013371) #27	HOXD4 (ENSCHIG00000019702) #28	HOXD3 (ENSCHIG00000011624) #29	HOXD1 (ENSCHIG00000017515) #31	MTX2 (ENSCHIG00000008892)	ENSCHIG00000015430	NFE2L2 (ENSCHIG00000026055)	AGPS (ENSCHIG00000015256)	ENSCHIG00000011750	ENSCHIG00000011716	PDE11A (ENSCHIG00000016852)
Bovinae	ANCESTRAL SPECIES	5	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.fc.a	ENSGT00390000010116.fc.b	ENSGT01100000263474.a.b.b.f.g.a.b
American bison	MODERN SPECIES	3320	SP3 (ENSBBBG00000016877) #8	ENSBBBG00000004193 #9	SP9 (ENSBBBG00000016959) #10	CIR1 (ENSBBBG00000016992) #11	SCRN3 (ENSBBBG00000017011) #12	GPR155 (ENSBBBG00000017134) #13	WIPF1 (ENSBBBG00000017196) #14	CHRNA1 (ENSBBBG00000017301) #15	CHN1 (ENSBBBG00000004302) #16	ATF2 (ENSBBBG00000017564) #17	ATP5MC3 (ENSBBBG00000017586) #18	ENSBBBG00000017593	LNPK (ENSBBBG00000017627) #19	ENSBBBG00000017634	ENSBBBG00000017638	HOXD13 (ENSBBBG00000017641) #22	HOXD12 (ENSBBBG00000017645) #23	HOXD10 (ENSBBBG00000006962) #25	HOXD9 (ENSBBBG00000017650) #26	HOXD8 (ENSBBBG00000017657) #27	HOXD4 (ENSBBBG00000017669) #28	HOXD3 (ENSBBBG00000017682) #29	HOXD1 (ENSBBBG00000017690) #31	ENSBBBG00000004376	ENSBBBG00000017700	MTX2 (ENSBBBG00000017733)	ENSBBBG00000007269	NFE2L2 (ENSBBBG00000017780)	AGPS (ENSBBBG00000017817)	ENSBBBG00000007701	ENSBBBG00000017832
Bos	ANCESTRAL SPECIES	6	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b.`c #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.fc.a	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a
Bos_a	ANCESTRAL SPECIES	4	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b.`c #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.fc.a	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b
Domestic yak	MODERN SPECIES	11	ENSBGRG00000013676	ENSBGRG00000013728 #9	SP9 (ENSBGRG00000014139) #10	CIR1 (ENSBGRG00000014162) #11	SCRN3 (ENSBGRG00000014271) #12	GPR155 (ENSBGRG00000014360) #13	ENSBGRG00000014674	ENSBGRG00000014699	CHRNA1 (ENSBGRG00000014839) #15	CHN1 (ENSBGRG00000015101) #16	ATF2 (ENSBGRG00000015648) #17	ATP5MC3 (ENSBGRG00000016024) #18	ENSBGRG00000016132	LNPK (ENSBGRG00000016182) #19	EVX2 (ENSBGRG00000016780) #21	HOXD13 (ENSBGRG00000016836) #22	HOXD12 (ENSBGRG00000016890) #23	HOXD11 (ENSBGRG00000016923) #24	HOXD10 (ENSBGRG00000016979) #25	HOXD9 (ENSBGRG00000017014) #26	HOXD8 (ENSBGRG00000017045) #27	ENSBGRG00000017167 #28	HOXD3 (ENSBGRG00000017255) #29	HOXD1 (ENSBGRG00000017303) #31	MTX2 (ENSBGRG00000017363)	ENSBGRG00000000202	NFE2L2 (ENSBGRG00000000213)	AGPS (ENSBGRG00000000237)	ENSBGRG00000000256	ENSBGRG00000000264	ENSBGRG00000000270
Wild yak	MODERN SPECIES	2654													LNPK (ENSBMUG00000015713) #19	ENSBMUG00000015669	ENSBMUG00000015650	HOXD13 (ENSBMUG00000015639) #22	HOXD12 (ENSBMUG00000015618) #23	HOXD10 (ENSBMUG00000015601) #25	ENSBMUG00000015587 #27	HOXD3 (ENSBMUG00000015572) #29	ENSBMUG00000015556
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000155099 #8	ENSGT01100000263480.a.b.b.a.b.b.a.a.a.b.b.a.b.b.a.a.a	ENSGT00390000000673.b.`c #9	ENSGT00940000166167.b	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT01030000234916.g.b	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.fc.a	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b
Cow	MODERN SPECIES	11	ENSBTAG00000052569	SP9 (ENSBTAG00000014949) #10	CIR1 (ENSBTAG00000038620) #11	SCRN3 (ENSBTAG00000012966) #12	GPR155 (ENSBTAG00000021636) #13	WIPF1 (ENSBTAG00000001585)	CHRNA1 (ENSBTAG00000018253) #15	CHN1 (ENSBTAG00000008028) #16	ATF2 (ENSBTAG00000002295) #17	ATP5MC3 (ENSBTAG00000002944) #18	ENSBTAG00000031711	LNPK (ENSBTAG00000018061) #19	ENSBTAG00000050237	ENSBTAG00000002009	EVX2 (ENSBTAG00000049537) #21	HOXD13 (ENSBTAG00000004313) #22	HOXD12 (ENSBTAG00000004314) #23	HOXD11 (ENSBTAG00000033330) #24	HOXD10 (ENSBTAG00000016030) #25	HOXD9 (ENSBTAG00000016033) #26	HOXD8 (ENSBTAG00000049845) #27	HOXD4 (ENSBTAG00000039581) #28	HOXD3 (ENSBTAG00000004835) #29	HOXD1 (ENSBTAG00000015840) #31	MTX2 (ENSBTAG00000006693)	HNRNPA3 (ENSBTAG00000021580)	NFE2L2 (ENSBTAG00000019255)	AGPS (ENSBTAG00000009897)	TTC30B (ENSBTAG00000027696)	TTC30A (ENSBTAG00000027694)	ENSBTAG00000049860
Hybrid Bos Indicus	MODERN SPECIES	11	ENSBIXG00005004969	SP9 (ENSBIXG00005002344) #10	CIR1 (ENSBIXG00005005349) #11	SCRN3 (ENSBIXG00005028812) #12	GPR155 (ENSBIXG00005028873) #13	ENSBIXG00005002196	CHRNA1 (ENSBIXG00005028981) #15	CHN1 (ENSBIXG00005001962) #16	ATF2 (ENSBIXG00005001719) #17	ATP5MC3 (ENSBIXG00005029222) #18	ENSBIXG00005029239	LNPK (ENSBIXG00005005282) #19	ENSBIXG00005029245	ENSBIXG00005029246	EVX2 (ENSBIXG00005005288) #21	HOXD13 (ENSBIXG00005001519) #22	HOXD12 (ENSBIXG00005001517) #23	HOXD11 (ENSBIXG00005001515) #24	HOXD10 (ENSBIXG00005005289) #25	HOXD9 (ENSBIXG00005030437) #26	HOXD8 (ENSBIXG00005030431) #27	HOXD3 (ENSBIXG00005030419) #29	HOXD1 (ENSBIXG00005030413) #31	MTX2 (ENSBIXG00005030400)	ENSBIXG00005030356	ENSBIXG00005030352	HNRNPA3 (ENSBIXG00005030333)	NFE2L2 (ENSBIXG00005030317)	AGPS (ENSBIXG00005030278)	ENSBIXG00005030257	ENSBIXG00005030245
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00940000163262.a	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.e #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Tenrec	MODERN SPECIES	2551																HOXD13 (ENSETEG00000011065) #22	ENSETEG00000011066 #24	HOXD10 (ENSETEG00000011067) #25	HOXD9 (ENSETEG00000011069) #26	ENSETEG00000011072	HOXD8 (ENSETEG00000011076) #27
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00940000163262.a	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.e #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116.o	ENSGT00390000010116.p	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Elephant	MODERN SPECIES	301	CDCA7 (ENSLAFG00000013007) #7	SP3 (ENSLAFG00000013121) #8	ENSLAFG00000032705	OLA1 (ENSLAFG00000002706) #9	SP9 (ENSLAFG00000026573) #10	CIR1 (ENSLAFG00000010236) #11	SCRN3 (ENSLAFG00000010241) #12	GPR155 (ENSLAFG00000010245) #13	WIPF1 (ENSLAFG00000028992) #14	CHRNA1 (ENSLAFG00000011067) #15	CHN1 (ENSLAFG00000011074) #16	ATF2 (ENSLAFG00000006463) #17	ENSLAFG00000010768 #18	LNPK (ENSLAFG00000004502) #19	EVX2 (ENSLAFG00000013264) #21	HOXD13 (ENSLAFG00000027629) #22	HOXD12 (ENSLAFG00000017497) #23	HOXD10 (ENSLAFG00000013262) #25	HOXD9 (ENSLAFG00000011494) #26	HOXD8 (ENSLAFG00000004364) #27	HOXD4 (ENSLAFG00000005480) #28	HOXD3 (ENSLAFG00000005477) #29	MTX2 (ENSLAFG00000013982)	ENSLAFG00000027712	NFE2L2 (ENSLAFG00000016263)	AGPS (ENSLAFG00000014990)	ENSLAFG00000014996	ENSLAFG00000005704	PDE11A (ENSLAFG00000005234)	ENSLAFG00000027524	RBM45 (ENSLAFG00000007464)
Xenarthra	ANCESTRAL SPECIES	11	ENSGT00940000156075.a.a	ENSGT00940000161352	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C	ENSGT00940000153147.m.a.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000164264	ENSGT00680000100059	ENSGT00940000156791
Armadillo	MODERN SPECIES	3580	ENSDNOG00000044516	OLA1 (ENSDNOG00000010630) #9	SP9 (ENSDNOG00000019150) #10	CIR1 (ENSDNOG00000033913) #11	SCRN3 (ENSDNOG00000035179) #12	GPR155 (ENSDNOG00000007590) #13	ENSDNOG00000041872	ENSDNOG00000033898	CHRNA1 (ENSDNOG00000016153) #15	CHN1 (ENSDNOG00000037568) #16	ATF2 (ENSDNOG00000015229) #17	ENSDNOG00000044678 #18	LNPK (ENSDNOG00000039308) #19	ENSDNOG00000045361	EVX2 (ENSDNOG00000019797) #21	HOXD13 (ENSDNOG00000019799) #22	HOXD12 (ENSDNOG00000047700) #23	HOXD11 (ENSDNOG00000044260) #24	HOXD10 (ENSDNOG00000034389) #25	HOXD8 (ENSDNOG00000036145) #27	HOXD4 (ENSDNOG00000019805) #28	HOXD3 (ENSDNOG00000035593) #29	HOXD1 (ENSDNOG00000019807) #31	MTX2 (ENSDNOG00000034659)	HNRNPA3 (ENSDNOG00000019022)	NFE2L2 (ENSDNOG00000019020)	AGPS (ENSDNOG00000032919)	ENSDNOG00000044838	ENSDNOG00000032224	ENSDNOG00000016006	RBM45 (ENSDNOG00000001973)
Sloth	MODERN SPECIES	8440																HOXD13 (ENSCHOG00000004807) #22
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000173501	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C.k	ENSGT00940000153147	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000173501	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C.k	ENSGT00940000153147	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Diprotodontia	ANCESTRAL SPECIES	11	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00570000080031	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a #18	ENSGT00390000001859 #19	ENSGT00940000173501	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C.k	ENSGT00940000153147.o.a	ENSGT00950000182892.a.a.b	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a
Diprotodontia_a	ANCESTRAL SPECIES	9	ENSGT00940000155436 #7	ENSGT00940000155099 #8	ENSGT00390000000673.b #9	ENSGT00940000162304 #10	ENSGT00730000111135 #11	ENSGT00390000013474.a #12	ENSGT00390000004153 #13	ENSGT00910000144296 #14	ENSGT00940000156851 #15	ENSGT01030000234635.a.b.a.b.b.a.a #16	ENSGT00940000156582 #17	ENSGT00940000154298.a.a.a #18	ENSGT00390000001859 #19	ENSGT00940000173501	ENSGT00940000161025 #21	ENSGT00940000161457 #22	ENSGT00940000159938 #23	ENSGT00940000161308 #24	ENSGT00940000158266 #25	ENSGT00940000161503 #26	ENSGT00940000161653 #27	ENSGT00940000157270 #28	ENSGT00940000160027 #29	ENSGT00940000161892 #31	ENSGT00950000182919.C.k.a	ENSGT00940000153147.o.a	ENSGT00950000182892.a.a.b	ENSGT00390000006051.d.b.a.a	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151
Common wonbat	MODERN SPECIES	1018	MAP3K20 (ENSVURG00010019465)	ENSVURG00010019448 #7	SP3 (ENSVURG00010019427) #8	OLA1 (ENSVURG00010019396) #9	SP9 (ENSVURG00010019382) #10	CIR1 (ENSVURG00010019374) #11	SCRN3 (ENSVURG00010019366) #12	GPR155 (ENSVURG00010019311) #13	WIPF1 (ENSVURG00010019295) #14	CHRNA1 (ENSVURG00010019276) #15	CHN1 (ENSVURG00010019258) #16	ATF2 (ENSVURG00010019225) #17	ENSVURG00010019213 #18	LNPK (ENSVURG00010019192) #19	EVX2 (ENSVURG00010019179) #21	HOXD13 (ENSVURG00010019176) #22	HOXD12 (ENSVURG00010019173) #23	ENSVURG00010019168 #24	HOXD10 (ENSVURG00010019165) #25	HOXD9 (ENSVURG00010019159) #26	HOXD8 (ENSVURG00010019156) #27	HOXD4 (ENSVURG00010019150) #28	HOXD3 (ENSVURG00010019148) #29	HOXD1 (ENSVURG00010019147) #31	ENSVURG00010019141	ENSVURG00010019134	ENSVURG00010019105	NFE2L2 (ENSVURG00010019096)	ENSVURG00010019089	AGPS (ENSVURG00010018947)	ENSVURG00010018908
koala	MODERN SPECIES	40	OLA1 (ENSPCIG00000026763) #9	SP9 (ENSPCIG00000027340) #10	CIR1 (ENSPCIG00000027338) #11	SCRN3 (ENSPCIG00000027336) #12	ENSPCIG00000027329	GPR155 (ENSPCIG00000026300) #13	WIPF1 (ENSPCIG00000026292) #14	ENSPCIG00000034435	CHRNA1 (ENSPCIG00000026290) #15	CHN1 (ENSPCIG00000026288) #16	ATF2 (ENSPCIG00000026284) #17	ENSPCIG00000026281 #18	LNPK (ENSPCIG00000029137) #19	ENSPCIG00000034586	EVX2 (ENSPCIG00000029139) #21	HOXD13 (ENSPCIG00000029140) #22	HOXD12 (ENSPCIG00000029141) #23	ENSPCIG00000034132 #24	HOXD10 (ENSPCIG00000029143) #25	HOXD9 (ENSPCIG00000033878) #26	HOXD8 (ENSPCIG00000029145) #27	HOXD3 (ENSPCIG00000026502) #29	HOXD4 (ENSPCIG00000026503) #28	HOXD1 (ENSPCIG00000026501) #31	MTX2 (ENSPCIG00000006277)	ENSPCIG00000034180	ENSPCIG00000035345	ENSPCIG00000025443	NFE2L2 (ENSPCIG00000025438)	ENSPCIG00000025432	AGPS (ENSPCIG00000025418)
Wallaby	MODERN SPECIES	13858																HOXD13 (ENSMEUG00000012158) #22
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000012578	ENSSHAG00000024673	ENSSHAG00000013923 #8	OLA1 (ENSSHAG00000020604) #9	SP9 (ENSSHAG00000022043) #10	CIR1 (ENSSHAG00000015674) #11	SCRN3 (ENSSHAG00000015809) #12	GPR155 (ENSSHAG00000001210) #13	WIPF1 (ENSSHAG00000005304) #14	CHRNA1 (ENSSHAG00000007749) #15	CHN1 (ENSSHAG00000008483) #16	ATF2 (ENSSHAG00000029247) #17	ATP5MC3 (ENSSHAG00000028674) #18	LNPK (ENSSHAG00000031133) #19	EVX2 (ENSSHAG00000015873) #21	HOXD13 (ENSSHAG00000015915) #22	HOXD12 (ENSSHAG00000021387) #23	HOXD11 (ENSSHAG00000021515) #24	HOXD10 (ENSSHAG00000016004) #25	HOXD9 (ENSSHAG00000021426) #26	HOXD8 (ENSSHAG00000026470) #27	HOXD3 (ENSSHAG00000024332) #29	HOXD4 (ENSSHAG00000024760) #28	HOXD1 (ENSSHAG00000016187) #31	MTX2 (ENSSHAG00000016381)	HNRNPA3 (ENSSHAG00000022116)	NFE2L2 (ENSSHAG00000018277)	ENSSHAG00000022926	AGPS (ENSSHAG00000018507)	PDE11A (ENSSHAG00000030320)	ENSSHAG00000005285
Opossum	MODERN SPECIES	3	ENSMODG00000024765	SP3 (ENSMODG00000009184) #8	OLA1 (ENSMODG00000009296) #9	SP9 (ENSMODG00000009303) #10	CIR1 (ENSMODG00000037714) #11	SCRN3 (ENSMODG00000009337) #12	GPR155 (ENSMODG00000009362) #13	WIPF1 (ENSMODG00000009366) #14	CHRNA1 (ENSMODG00000009414) #15	CHN1 (ENSMODG00000009464) #16	ATF2 (ENSMODG00000009514) #17	ENSMODG00000009520 #18	ENSMODG00000047401	ENSMODG00000009536 #19	EVX2 (ENSMODG00000009546) #21	HOXD13 (ENSMODG00000009550) #22	HOXD12 (ENSMODG00000024741) #23	HOXD11 (ENSMODG00000009565) #24	HOXD10 (ENSMODG00000009577) #25	HOXD9 (ENSMODG00000009591) #26	HOXD8 (ENSMODG00000009593) #27	HOXD4 (ENSMODG00000009598) #28	HOXD3 (ENSMODG00000046524) #29	HOXD1 (ENSMODG00000009604) #31	MTX2 (ENSMODG00000009617)	NFE2L2 (ENSMODG00000009624)	AGPS (ENSMODG00000009686)	ENSMODG00000048757	ENSMODG00000048807	PDE11A (ENSMODG00000036430)	ENSMODG00000037708