Glires	ANCESTRAL SPECIES	14	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116 #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964
Rodentia	ANCESTRAL SPECIES	14	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116 #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116 #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116 #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964
Muroidea	ANCESTRAL SPECIES	34	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a.a #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b
Murinae	ANCESTRAL SPECIES	1	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a.b #33	ENSGT00390000010116.y.a.a #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618
Rat	MODERN SPECIES	13	Gpr155 (ENSRNOG00000018485) #7	Wipf1 (ENSRNOG00000018406) #8	Rbx1-ps2 (ENSRNOG00000067031) #9	Chrna1 (ENSRNOG00000018286) #10	Chn1 (ENSRNOG00000017939) #11	ENSRNOG00000068403 #12	Atf2 (ENSRNOG00000001597) #13	Atp5mc3 (ENSRNOG00000001596) #14	Lnpk (ENSRNOG00000001593) #15	Evx2 (ENSRNOG00000001589) #16	Hoxd13 (ENSRNOG00000001588) #17	Hoxd12 (ENSRNOG00000001587) #18	Hoxd11 (ENSRNOG00000069591) #19	Hoxd10 (ENSRNOG00000001581) #20	Hoxd9 (ENSRNOG00000001580) #21	Hoxd8 (ENSRNOG00000071108) #22	Hoxd4 (ENSRNOG00000001578) #23	AABR07052559.1 (ENSRNOG00000053144) #24	Hoxd3 (ENSRNOG00000001577) #25	Hoxd1 (ENSRNOG00000001572) #26	Mtx2 (ENSRNOG00000001559) #27	Hnrnpa3 (ENSRNOG00000052968) #28	Nfe2l2 (ENSRNOG00000001548) #29	ENSRNOG00000066660 #30	Agps (ENSRNOG00000001547) #31	Ttc30b (ENSRNOG00000059460) #32	Ttc30a1 (ENSRNOG00000052519) #33	Ttc30a (ENSRNOG00000069321) #34	Cyct (ENSRNOG00000024457) #35	Rbm45 (ENSRNOG00000010595) #36	Osbpl6 (ENSRNOG00000010812) #37
Mus	ANCESTRAL SPECIES	1	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #28	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a.b #33	ENSGT00390000010116.y.a.a #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Mus_A	ANCESTRAL SPECIES		ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #28	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a.b #33	ENSGT00390000010116.y.a.a #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a.b #33	ENSGT00390000010116.y.a.a #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618
Mouse	MODERN SPECIES	11	Cir1 (ENSMUSG00000041777)	Scrn3 (ENSMUSG00000008226)	Gpr155 (ENSMUSG00000041762) #7	Wipf1 (ENSMUSG00000075284) #8	Chrna1 (ENSMUSG00000027107) #10	Chn1 (ENSMUSG00000056486) #11	Atf2 (ENSMUSG00000027104) #13	Atp5g3 (ENSMUSG00000018770) #14	Lnpk (ENSMUSG00000009207) #15	Evx2 (ENSMUSG00000001815) #16	Hoxd13 (ENSMUSG00000001819) #17	Hoxd12 (ENSMUSG00000001823) #18	Hoxd11 (ENSMUSG00000042499) #19	Hoxd10 (ENSMUSG00000050368) #20	Hoxd9 (ENSMUSG00000043342) #21	Hoxd8 (ENSMUSG00000027102) #22	Hoxd3 (ENSMUSG00000079277) #25	Hoxd4 (ENSMUSG00000101174) #23	Hoxd1 (ENSMUSG00000042448) #26	Mtx2 (ENSMUSG00000027099) #27	Hnrnpa3 (ENSMUSG00000059005) #28	Nfe2l2 (ENSMUSG00000015839) #29	Agps (ENSMUSG00000042410) #31	Ttc30b (ENSMUSG00000075273) #32	Ttc30a2 (ENSMUSG00000075272) #33	Ttc30a1 (ENSMUSG00000075271) #34	Pde11a (ENSMUSG00000075270) #35	Cyct (ENSMUSG00000056436)	Rbm45 (ENSMUSG00000042369) #36	Osbpl6 (ENSMUSG00000042359) #37	Prkra (ENSMUSG00000002731)
Mus_C	ANCESTRAL SPECIES		ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.b ##28	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116.y.b #32	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b
Steppe mouse	MODERN SPECIES	3326	Gpr155 (ENSMSIG00000006975) #7	Wipf1 (ENSMSIG00000006899) #8	Chrna1 (ENSMSIG00000006852) #10	Chn1 (ENSMSIG00000006692) #11	ENSMSIG00000006659	Atf2 (ENSMSIG00000006546) #13	Atp5g3 (ENSMSIG00000006512) #14	ENSMSIG00000006495	Lnpk (ENSMSIG00000006386) #15	Evx2 (ENSMSIG00000006361) #16	Hoxd13 (ENSMSIG00000006348) #17	Hoxd12 (ENSMSIG00000006333) #18	Hoxd11 (ENSMSIG00000006326) #19	Hoxd10 (ENSMSIG00000006313) #20	Hoxd9 (ENSMSIG00000006304) #21	Hoxd8 (ENSMSIG00000006283) #22	ENSMSIG00000006186 #23	Hoxd3 (ENSMSIG00000006158) #25	Hoxd1 (ENSMSIG00000006137) #26	Mtx2 (ENSMSIG00000006053) #27	ENSMSIG00000006005	ENSMSIG00000005981	ENSMSIG00000005709 ##28	Nfe2l2 (ENSMSIG00000005673) #29
spretus	MODERN SPECIES	11	Cir1 (MGP_SPRETEiJ_G0024580)	Scrn3 (MGP_SPRETEiJ_G0024581)	Gpr155 (MGP_SPRETEiJ_G0024582) #7	Wipf1 (MGP_SPRETEiJ_G0024583) #8	Chrna1 (MGP_SPRETEiJ_G0024584) #10	Chn1 (MGP_SPRETEiJ_G0024585) #11	Atf2 (MGP_SPRETEiJ_G0024586) #13	Atp5g3 (MGP_SPRETEiJ_G0024587) #14	Lnpk (MGP_SPRETEiJ_G0024588) #15	Evx2 (MGP_SPRETEiJ_G0024589) #16	Hoxd13 (MGP_SPRETEiJ_G0024590) #17	Hoxd12 (MGP_SPRETEiJ_G0024591) #18	Hoxd11 (MGP_SPRETEiJ_G0024592) #19	Hoxd10 (MGP_SPRETEiJ_G0024593) #20	Hoxd9 (MGP_SPRETEiJ_G0024594) #21	Hoxd8 (MGP_SPRETEiJ_G0024595) #22	Hoxd3 (MGP_SPRETEiJ_G0024596) #25	Hoxd4 (MGP_SPRETEiJ_G0024597) #23	MGP_SPRETEiJ_G0024598 #23	Hoxd1 (MGP_SPRETEiJ_G0024599) #26	Mtx2 (MGP_SPRETEiJ_G0024600) #27	MGP_SPRETEiJ_G0024601 ##28	Nfe2l2 (MGP_SPRETEiJ_G0024602) #29	Agps (MGP_SPRETEiJ_G0024603) #31	MGP_SPRETEiJ_G0024604 ##34	Pde11a (MGP_SPRETEiJ_G0024605) #35	Cyct (MGP_SPRETEiJ_G0024606)	Rbm45 (MGP_SPRETEiJ_G0024607) #36	Osbpl6 (MGP_SPRETEiJ_G0024608) #37	Prkra (MGP_SPRETEiJ_G0024609)	Pjvk (MGP_SPRETEiJ_G0024610)
Ryukyu mouse	MODERN SPECIES	11	Cir1 (MGP_CAROLIEiJ_G0023657)	Scrn3 (MGP_CAROLIEiJ_G0023658)	Gpr155 (MGP_CAROLIEiJ_G0023659) #7	Wipf1 (MGP_CAROLIEiJ_G0023660) #8	Chrna1 (MGP_CAROLIEiJ_G0023661) #10	Chn1 (MGP_CAROLIEiJ_G0023662) #11	Atf2 (MGP_CAROLIEiJ_G0023663) #13	Atp5g3 (MGP_CAROLIEiJ_G0023664) #14	Lnpk (MGP_CAROLIEiJ_G0023665) #15	Evx2 (MGP_CAROLIEiJ_G0023666) #16	Hoxd13 (MGP_CAROLIEiJ_G0023667) #17	Hoxd12 (MGP_CAROLIEiJ_G0023668) #18	Hoxd11 (MGP_CAROLIEiJ_G0023669) #19	Hoxd10 (MGP_CAROLIEiJ_G0023670) #20	Hoxd9 (MGP_CAROLIEiJ_G0023671) #21	Hoxd8 (MGP_CAROLIEiJ_G0023672) #22	Hoxd3 (MGP_CAROLIEiJ_G0023673) #25	Hoxd4 (MGP_CAROLIEiJ_G0023674) #23	MGP_CAROLIEiJ_G0023675 #23	Hoxd1 (MGP_CAROLIEiJ_G0023676) #26	Mtx2 (MGP_CAROLIEiJ_G0023677) #27	MGP_CAROLIEiJ_G0023678 ##28	Nfe2l2 (MGP_CAROLIEiJ_G0023679) #29	Agps (MGP_CAROLIEiJ_G0023680) #31	MGP_CAROLIEiJ_G0023681 #32	MGP_CAROLIEiJ_G0023682 #32	Pde11a (MGP_CAROLIEiJ_G0023683) #35	MGP_CAROLIEiJ_G0023684	Cyct (MGP_CAROLIEiJ_G0023685)	Rbm45 (MGP_CAROLIEiJ_G0023686) #36	Osbpl6 (MGP_CAROLIEiJ_G0023687) #37
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025109	Scrn3 (MGP_PahariEiJ_G0025110)	Gpr155 (MGP_PahariEiJ_G0025111) #7	Wipf1 (MGP_PahariEiJ_G0025112) #8	Chrna1 (MGP_PahariEiJ_G0025113) #10	MGP_PahariEiJ_G0025114 #11	Atf2 (MGP_PahariEiJ_G0025115) #13	Atp5g3 (MGP_PahariEiJ_G0025116) #14	Lnpk (MGP_PahariEiJ_G0025117) #15	Evx2 (MGP_PahariEiJ_G0025118) #16	Hoxd13 (MGP_PahariEiJ_G0025119) #17	Hoxd12 (MGP_PahariEiJ_G0025120) #18	Hoxd11 (MGP_PahariEiJ_G0025121) #19	Hoxd10 (MGP_PahariEiJ_G0025122) #20	Hoxd9 (MGP_PahariEiJ_G0025123) #21	Hoxd8 (MGP_PahariEiJ_G0025124) #22	Hoxd3 (MGP_PahariEiJ_G0025125) #25	Hoxd4 (MGP_PahariEiJ_G0025126) #23	MGP_PahariEiJ_G0025127 #23	Hoxd1 (MGP_PahariEiJ_G0025128) #26	Mtx2 (MGP_PahariEiJ_G0025129) #27	Hnrnpa3 (MGP_PahariEiJ_G0025130) ##28	Nfe2l2 (MGP_PahariEiJ_G0025131) #29	MGP_PahariEiJ_G0025132 #31	MGP_PahariEiJ_G0025133 #33	MGP_PahariEiJ_G0025134 #33	Pde11a (MGP_PahariEiJ_G0025135) #35	Cyct (MGP_PahariEiJ_G0025136)	Rbm45 (MGP_PahariEiJ_G0025137) #36	Osbpl6 (MGP_PahariEiJ_G0025138) #37	Prkra (MGP_PahariEiJ_G0025139)
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a.a #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000171387	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000154808.a.a	ENSGT00940000153147.m.a.a.a.b.a.b.p #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a.a #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618
Chinese hamster chok1gshd	MODERN SPECIES	188	Gpr155 (ENSCGRG00001014219) #7	ENSCGRG00001021853	Chrna1 (ENSCGRG00001020291) #10	ENSCGRG00001019803	Chn1 (ENSCGRG00001019152) #11	Atf2 (ENSCGRG00001015584) #13	Atp5g3 (ENSCGRG00001012041) #14	Lnpk (ENSCGRG00001011515) #15	ENSCGRG00001006802	Evx2 (ENSCGRG00001003649) #16	Hoxd13 (ENSCGRG00001001661) #17	Hoxd12 (ENSCGRG00001000877) #18	Hoxd11 (ENSCGRG00001010386) #19	Hoxd10 (ENSCGRG00001008302) #20	Hoxd9 (ENSCGRG00001005991) #21	Hoxd8 (ENSCGRG00001013130) #22	Hoxd4 (ENSCGRG00001012360) #23	Hoxd3 (ENSCGRG00001011863) #25	Hoxd1 (ENSCGRG00001011572) #26	ENSCGRG00001014512	Mtx2 (ENSCGRG00001014247) #27	ENSCGRG00001003235	ENSCGRG00001008592 #28	Nfe2l2 (ENSCGRG00001005715) #29	Agps (ENSCGRG00001003863) #31	Ttc30b (ENSCGRG00001002157) #32	Ttc30a1 (ENSCGRG00001000892) #34	ENSCGRG00001003072	Pde11a (ENSCGRG00001011422) #35	Cyct (ENSCGRG00001008096)	Rbm45 (ENSCGRG00001005759) #36
Golden Hamster	MODERN SPECIES	618	Scrn3 (ENSMAUG00000020703)	Gpr155 (ENSMAUG00000019481) #7	ENSMAUG00000019796	Chrna1 (ENSMAUG00000017924) #10	Chn1 (ENSMAUG00000018455) #11	Atf2 (ENSMAUG00000018366) #13	Atp5g3 (ENSMAUG00000017685) #14	ENSMAUG00000020495	Lnpk (ENSMAUG00000018821) #15	Evx2 (ENSMAUG00000020383) #16	Hoxd13 (ENSMAUG00000017185) #17	Hoxd12 (ENSMAUG00000018416) #18	ENSMAUG00000020249 #19	Hoxd10 (ENSMAUG00000016731) #20	Hoxd9 (ENSMAUG00000018538) #21	Hoxd8 (ENSMAUG00000018092) #22	Hoxd4 (ENSMAUG00000018545) #23	Hoxd3 (ENSMAUG00000018318) #25	Hoxd1 (ENSMAUG00000018401) #26	Mtx2 (ENSMAUG00000017870) #27	ENSMAUG00000017462	Nfe2l2 (ENSMAUG00000017700) #29	Agps (ENSMAUG00000017317) #31	Pde11a (ENSMAUG00000021257) #35	Cyct (ENSMAUG00000016722)	Rbm45 (ENSMAUG00000016948) #36	Osbpl6 (ENSMAUG00000018609) #37	Prkra (ENSMAUG00000019631)	Pjvk (ENSMAUG00000018018)	Fkbp7 (ENSMAUG00000016606)	Plekha3 (ENSMAUG00000019341)
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a.a #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b
Prairie vole	MODERN SPECIES	12	Cir1 (ENSMOCG00000017545)	Scrn3 (ENSMOCG00000018966)	Gpr155 (ENSMOCG00000003950) #7	ENSMOCG00000014660	Chrna1 (ENSMOCG00000020367) #10	Chn1 (ENSMOCG00000005574) #11	Atf2 (ENSMOCG00000015301) #13	ENSMOCG00000012786 #14	Lnpk (ENSMOCG00000022345) #15	Evx2 (ENSMOCG00000010466) #16	Hoxd13 (ENSMOCG00000014618) #17	Hoxd12 (ENSMOCG00000018953) #18	Hoxd11 (ENSMOCG00000019226) #19	Hoxd10 (ENSMOCG00000006052) #20	Hoxd9 (ENSMOCG00000005870) #21	Hoxd8 (ENSMOCG00000022746) #22	Hoxd3 (ENSMOCG00000022552) #25	Hoxd4 (ENSMOCG00000013646) #23	Hoxd1 (ENSMOCG00000014086) #26	Mtx2 (ENSMOCG00000017110) #27	ENSMOCG00000019409 ##28	Nfe2l2 (ENSMOCG00000020760) #29	Agps (ENSMOCG00000017476) #31	Ttc30b (ENSMOCG00000001580) #32	ENSMOCG00000001098	Ttc30a2 (ENSMOCG00000002802) #33	Pde11a (ENSMOCG00000005959) #35	Cyct (ENSMOCG00000021506)	Rbm45 (ENSMOCG00000017295) #36	Osbpl6 (ENSMOCG00000017155) #37	Prkra (ENSMOCG00000004548)
Northern American deer mouse	MODERN SPECIES	17	Scrn3 (ENSPEMG00000022424)	Gpr155 (ENSPEMG00000022602) #7	Wipf1 (ENSPEMG00000013848) #8	Chrna1 (ENSPEMG00000012571) #10	Chn1 (ENSPEMG00000022535) #11	Atf2 (ENSPEMG00000021625) #13	Atp5g3 (ENSPEMG00000023766) #14	ENSPEMG00000008662	Lnpk (ENSPEMG00000017827) #15	Evx2 (ENSPEMG00000022145) #16	Hoxd13 (ENSPEMG00000022412) #17	Hoxd12 (ENSPEMG00000019240) #18	ENSPEMG00000018816 #19	Hoxd10 (ENSPEMG00000030445) #20	Hoxd9 (ENSPEMG00000006162) #21	ENSPEMG00000028623 #22	ENSPEMG00000029322	Hoxd4 (ENSPEMG00000024627) #23	Hoxd3 (ENSPEMG00000028862) #25	Hoxd1 (ENSPEMG00000021389) #26	Mtx2 (ENSPEMG00000022093) #27	Hnrnpa3 (ENSPEMG00000021885) #28	Nfe2l2 (ENSPEMG00000023181) #29	Agps (ENSPEMG00000010561) #31	ENSPEMG00000023662	Ttc30b (ENSPEMG00000001902) #32	Ttc30a1 (ENSPEMG00000025624) #34	Pde11a (ENSPEMG00000021597) #35	Cyct (ENSPEMG00000028091)	Rbm45 (ENSPEMG00000002470) #36	Osbpl6 (ENSPEMG00000010580) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1735	Cir1 (ENSNGAG00000023091)	Scrn3 (ENSNGAG00000008783)	Gpr155 (ENSNGAG00000019246) #7	ENSNGAG00000022478 #8	Chrna1 (ENSNGAG00000023534) #10	Chn1 (ENSNGAG00000021893) #11	Atf2 (ENSNGAG00000003870) #13	Atp5g3 (ENSNGAG00000004748) #14	Lnpk (ENSNGAG00000023466) #15	Evx2 (ENSNGAG00000023877) #16	Hoxd13 (ENSNGAG00000023727) #17	Hoxd12 (ENSNGAG00000023455) #18	Hoxd11 (ENSNGAG00000023438) #19	Hoxd10 (ENSNGAG00000023868) #20	Hoxd9 (ENSNGAG00000011105) #21	Hoxd8 (ENSNGAG00000011799) #22	Hoxd4 (ENSNGAG00000020270) #23	Hoxd3 (ENSNGAG00000021055) #25	Hoxd1 (ENSNGAG00000021714) #26	Mtx2 (ENSNGAG00000020555) #27	ENSNGAG00000021745 ##28	Nfe2l2 (ENSNGAG00000022809) #29	Agps (ENSNGAG00000020263) #31	ENSNGAG00000022555 #34	Pde11a (ENSNGAG00000023493) #35	Cyct (ENSNGAG00000023547)	ENSNGAG00000021016	Rbm45 (ENSNGAG00000023886) #36	Osbpl6 (ENSNGAG00000014527) #37	Prkra (ENSNGAG00000021816)	Pjvk (ENSNGAG00000022020)
Kangaroo rat	MODERN SPECIES	324	ENSDORG00000008681	Sp9 (ENSDORG00000025534)	Cir1 (ENSDORG00000013676)	ENSDORG00000013682	Gpr155 (ENSDORG00000013683) #7	ENSDORG00000027952 #8	Chrna1 (ENSDORG00000001136) #10	Chn1 (ENSDORG00000002182) #11	Atf2 (ENSDORG00000024409) #13	Atp5g3 (ENSDORG00000012973) #14	Lnpk (ENSDORG00000015736) #15	Evx2 (ENSDORG00000009432) #16	Hoxd12 (ENSDORG00000009434) #18	ENSDORG00000029219 #19	Hoxd10 (ENSDORG00000009436) #20	ENSDORG00000027655 #22	Hoxd4 (ENSDORG00000028681) #23	Hoxd3 (ENSDORG00000029389) #25	Hoxd1 (ENSDORG00000009445) #26	Mtx2 (ENSDORG00000003848) #27	Hnrnpa3 (ENSDORG00000011155) #28	Nfe2l2 (ENSDORG00000030173) #29	Agps (ENSDORG00000006480) #31	ENSDORG00000028567 #34	ENSDORG00000028697 #34	ENSDORG00000023150 #34	Cyct (ENSDORG00000004101)	Rbm45 (ENSDORG00000015831) #36	Osbpl6 (ENSDORG00000001912) #37	Prkra (ENSDORG00000013338)	Pjvk (ENSDORG00000013339)
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116 #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296.t #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116 #34	ENSGT00940000162151 #35	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296.t #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116 #34	ENSGT00940000162151 #35	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296.t #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116 #34	ENSGT00940000162151 #35	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Long-tailed chinchilla	MODERN SPECIES	110	KLKB1 (ENSCLAG00000016848)	F11 (ENSCLAG00000012318)	MTNR1A (ENSCLAG00000015269)	FAT1 (ENSCLAG00000013169)	ENSCLAG00000015923	ZFP42 (ENSCLAG00000011822)	TRIML2 (ENSCLAG00000011159)	TRIML1 (ENSCLAG00000014494)	LNPK (ENSCLAG00000015033) #15	EVX2 (ENSCLAG00000014389) #16	HOXD13 (ENSCLAG00000013095) #17	HOXD12 (ENSCLAG00000013058) #18	ENSCLAG00000012563 #19	HOXD10 (ENSCLAG00000012482) #20	HOXD9 (ENSCLAG00000012447) #21	ENSCLAG00000011108 #22	HOXD4 (ENSCLAG00000014461) #23	ENSCLAG00000013605 #25	HOXD1 (ENSCLAG00000012505) #26	MTX2 (ENSCLAG00000011598) #27	ENSCLAG00000011088	HNRNPA3 (ENSCLAG00000012855) #28	NFE2L2 (ENSCLAG00000013122) #29	ENSCLAG00000012626	ENSCLAG00000013627	AGPS (ENSCLAG00000013279) #31	ENSCLAG00000017938 #34	ENSCLAG00000013714 #34	PDE11A (ENSCLAG00000013013) #35	RBM45 (ENSCLAG00000015215) #36	OSBPL6 (ENSCLAG00000011433) #37
Degu	MODERN SPECIES	106	ENSODEG00000008975 #8	ENSODEG00000019598	CHRNA1 (ENSODEG00000010458) #10	CHN1 (ENSODEG00000008560) #11	ATF2 (ENSODEG00000010947) #13	ENSODEG00000010951 #14	ENSODEG00000010385	LNPK (ENSODEG00000010046) #15	ENSODEG00000008992	EVX2 (ENSODEG00000010771) #16	HOXD13 (ENSODEG00000008793) #17	HOXD12 (ENSODEG00000008376) #18	ENSODEG00000010934 #19	HOXD10 (ENSODEG00000010382) #20	HOXD9 (ENSODEG00000008626) #21	ENSODEG00000010496 #22	HOXD4 (ENSODEG00000010297) #23	HOXD3 (ENSODEG00000009722) #25	HOXD1 (ENSODEG00000008961) #26	ENSODEG00000008879	MTX2 (ENSODEG00000008062) #27	ENSODEG00000009697	ENSODEG00000009265	NFE2L2 (ENSODEG00000010043) #29	AGPS (ENSODEG00000008272) #31	ENSODEG00000020058 #34	ENSODEG00000019592 #34	PDE11A (ENSODEG00000010682) #35	ENSODEG00000019574	RBM45 (ENSODEG00000007959) #36	ENSODEG00000019659
Guinea pig	MODERN SPECIES	3	CIR1 (ENSCPOG00000010275)	SCRN3 (ENSCPOG00000010281)	GPR155 (ENSCPOG00000010286) #7	ENSCPOG00000034131 #8	CHRNA1 (ENSCPOG00000000036) #10	ENSCPOG00000002789 #11	ATF2 (ENSCPOG00000004637) #13	ATP5MC3 (ENSCPOG00000040161) #14	LNPK (ENSCPOG00000010971) #15	EVX2 (ENSCPOG00000006711) #16	HOXD13 (ENSCPOG00000006722) #17	HOXD12 (ENSCPOG00000005496) #18	ENSCPOG00000019766 #19	HOXD10 (ENSCPOG00000011368) #20	HOXD9 (ENSCPOG00000015006) #21	HOXD8 (ENSCPOG00000015005) #22	HOXD4 (ENSCPOG00000036552) #23	HOXD3 (ENSCPOG00000034932) #25	HOXD1 (ENSCPOG00000005509) #26	MTX2 (ENSCPOG00000011099) #27	ENSCPOG00000027250	ENSCPOG00000004251 #28	NFE2L2 (ENSCPOG00000031261) #29	AGPS (ENSCPOG00000000679) #31	ENSCPOG00000000681 #34	PDE11A (ENSCPOG00000000682) #35	RBM45 (ENSCPOG00000000684) #36	OSBPL6 (ENSCPOG00000002816) #37	ENSCPOG00000003900	PJVK (ENSCPOG00000037882)	FKBP7 (ENSCPOG00000037159)
Naked mole-rat female	MODERN SPECIES	22	GPR155 (ENSHGLG00000012529) #7	ENSHGLG00000036822 #8	ENSHGLG00000039411 #8	CHRNA1 (ENSHGLG00000015432) #10	ENSHGLG00000016114 #11	ENSHGLG00000018805 #13	Atp5mc3 (ENSHGLG00000033165) #14	ENSHGLG00000040802	LNPK (ENSHGLG00000004015) #15	EVX2 (ENSHGLG00000004218) #16	HOXD13 (ENSHGLG00000050884) #17	HOXD12 (ENSHGLG00000005403) #18	HOXD11 (ENSHGLG00000034527) #19	HOXD9 (ENSHGLG00000007185) #21	HOXD10 (ENSHGLG00000033462) #20	ENSHGLG00000003577 #22	HOXD4 (ENSHGLG00000037842) #23	HOXD3 (ENSHGLG00000003761) #25	HOXD1 (ENSHGLG00000004072) #26	MTX2 (ENSHGLG00000004177) #27	ENSHGLG00000012734	ENSHGLG00000046644	ENSHGLG00000036655	HNRNPA3 (ENSHGLG00000005451) #28	NFE2L2 (ENSHGLG00000006475) #29	AGPS (ENSHGLG00000007541) #31	ENSHGLG00000036841 #34	TTC30B (ENSHGLG00000042840) #34	ENSHGLG00000005226 #35	ENSHGLG00000006609	ENSHGLG00000007342 #36
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.xb #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116 #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964
Marmotini	ANCESTRAL SPECIES	2	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.xb.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116.gb #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964
Alpin marmot	MODERN SPECIES	5	ENSMMMG00000023702	GPR155 (ENSMMMG00000023705) #7	ENSMMMG00000023714	WIPF1 (ENSMMMG00000023716) #8	CHRNA1 (ENSMMMG00000023717) #10	CHN1 (ENSMMMG00000023718) #11	ENSMMMG00000023730	ATF2 (ENSMMMG00000023733) #13	ENSMMMG00000023748 #14	LNPK (ENSMMMG00000023755) #15	HOXD13 (ENSMMMG00000023759) #17	HOXD12 (ENSMMMG00000023760) #18	ENSMMMG00000023762 #19	HOXD10 (ENSMMMG00000023763) #20	HOXD9 (ENSMMMG00000023764) #21	ENSMMMG00000023765 #22	HOXD4 (ENSMMMG00000023767) #23	HOXD3 (ENSMMMG00000023768) #25	MTX2 (ENSMMMG00000023772) #27	NFE2L2 (ENSMMMG00000023776) #29	AGPS (ENSMMMG00000023778) #31
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00910000144296 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.xb.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116.gb #34	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b	ENSGT00940000159964
Squirrel	MODERN SPECIES	109	OLA1 (ENSSTOG00000015547)	CIR1 (ENSSTOG00000001233)	SCRN3 (ENSSTOG00000001236)	GPR155 (ENSSTOG00000001239) #7	ENSSTOG00000004271 #8	CHRNA1 (ENSSTOG00000004281) #10	CHN1 (ENSSTOG00000004301) #11	ATF2 (ENSSTOG00000014079) #13	ENSSTOG00000013572 #14	LNPK (ENSSTOG00000014498) #15	EVX2 (ENSSTOG00000014512) #16	HOXD13 (ENSSTOG00000004117) #17	HOXD12 (ENSSTOG00000004918) #18	HOXD10 (ENSSTOG00000003935) #20	HOXD9 (ENSSTOG00000026761) #21	ENSSTOG00000023453 #22	HOXD4 (ENSSTOG00000029055) #23	HOXD3 (ENSSTOG00000014680) #25	HOXD1 (ENSSTOG00000012230) #26	MTX2 (ENSSTOG00000014688) #27	ENSSTOG00000030884	HNRNPA3 (ENSSTOG00000025125) #28	NFE2L2 (ENSSTOG00000000313) #29	AGPS (ENSSTOG00000012623) #31	ENSSTOG00000003267 #34	PDE11A (ENSSTOG00000012639) #35	ENSSTOG00000008853	RBM45 (ENSSTOG00000002708) #36	OSBPL6 (ENSSTOG00000006092) #37	PRKRA (ENSSTOG00000006156)	PJVK (ENSSTOG00000028411)
Arctic ground squirrel	MODERN SPECIES	323				WIPF1 (ENSUPAG00010020649) #8	CHRNA1 (ENSUPAG00010020641) #10	CHN1 (ENSUPAG00010020575) #11	ATF2 (ENSUPAG00010020491) #13	ENSUPAG00010020485 #14	LNPK (ENSUPAG00010020452) #15	EVX2 (ENSUPAG00010020442) #16	HOXD13 (ENSUPAG00010020441) #17	HOXD12 (ENSUPAG00010020440) #18	HOXD11 (ENSUPAG00010020439) #19	HOXD10 (ENSUPAG00010020434) #20	HOXD9 (ENSUPAG00010020431) #21	HOXD8 (ENSUPAG00010020425) #22	HOXD4 (ENSUPAG00010020416) #23	HOXD3 (ENSUPAG00010020410) #25	HOXD1 (ENSUPAG00010020407) #26	ENSUPAG00010020400	MTX2 (ENSUPAG00010020394) #27
Eurasian red squirrel	MODERN SPECIES	12	SCRN3 (ENSSVLG00005002703)	GPR155 (ENSSVLG00005002750) #7	WIPF1 (ENSSVLG00005002786) #8	CHRNA1 (ENSSVLG00005002856) #10	CHN1 (ENSSVLG00005003041) #11	ENSSVLG00005003279 #13	ENSSVLG00005003430 #14	ENSSVLG00005003466	LNPK (ENSSVLG00005003500) #15	EVX2 (ENSSVLG00005003539) #16	HOXD13 (ENSSVLG00005003554) #17	HOXD12 (ENSSVLG00005003565) #18	HOXD11 (ENSSVLG00005003581) #19	HOXD10 (ENSSVLG00005003599) #20	HOXD9 (ENSSVLG00005003618) #21	HOXD8 (ENSSVLG00005003645) #22	HOXD4 (ENSSVLG00005003676) #23	HOXD1 (ENSSVLG00005003762) #26	MTX2 (ENSSVLG00005003812) #27	ENSSVLG00005003881 #28	ENSSVLG00005003903 #29	AGPS (ENSSVLG00005003959) #31	ENSSVLG00005003996 #34	ENSSVLG00005004006 #34	ENSSVLG00005004018 #34	PDE11A (ENSSVLG00005004050) #35	ENSSVLG00005004113	RBM45 (ENSSVLG00005004137) #36	OSBPL6 (ENSSVLG00005004465) #37	PRKRA (ENSSVLG00005005027)	PJVK (ENSSVLG00005005095)
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT00390000000673.b	ENSGT00730000111135	ENSGT00390000013474.a	ENSGT00390000004153 #7	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #25	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #31	ENSGT00390000010116 #34	ENSGT00940000164264	ENSGT00940000162151 #35	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #36	ENSGT00940000156791 #37	ENSGT00940000157618	ENSGT00950000183140.a.b
Pika	MODERN SPECIES	959													ENSOPRG00000004018 #19	HOXD10 (ENSOPRG00000004038) #20	ENSOPRG00000004049 #21	HOXD8 (ENSOPRG00000004065) #22	ENSOPRG00000004081 #23	HOXD3 (ENSOPRG00000004098) #25	ENSOPRG00000004116 #26
Rabbit	MODERN SPECIES	18	SCRN3 (ENSOCUG00000011499)	GPR155 (ENSOCUG00000003683) #7	ENSOCUG00000036607	ENSOCUG00000005696	CHRNA1 (ENSOCUG00000024814) #10	CHN1 (ENSOCUG00000008134) #11	ATF2 (ENSOCUG00000012156) #13	ATP5MC3 (ENSOCUG00000012164) #14	LNPK (ENSOCUG00000008962) #15	EVX2 (ENSOCUG00000032776) #16	HOXD13 (ENSOCUG00000029547) #17	HOXD12 (ENSOCUG00000002412) #18	HOXD11 (ENSOCUG00000013942) #19	HOXD10 (ENSOCUG00000008964) #20	HOXD9 (ENSOCUG00000023956) #21	ENSOCUG00000035940 #22	HOXD4 (ENSOCUG00000002413) #23	HOXD3 (ENSOCUG00000014119) #25	HOXD1 (ENSOCUG00000015582) #26	MTX2 (ENSOCUG00000008760) #27	ENSOCUG00000025666	ENSOCUG00000030456	ENSOCUG00000002743 #28	NFE2L2 (ENSOCUG00000001009) #29	AGPS (ENSOCUG00000011521) #31	ENSOCUG00000029884 #34	ENSOCUG00000039012 #34	ENSOCUG00000008038	ENSOCUG00000039559	ENSOCUG00000025342	RBM45 (ENSOCUG00000001125) #36