Mus	ANCESTRAL SPECIES	1	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296 #10	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #25	ENSGT00940000160027 #23	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##28	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.y.b ##32	ENSGT00390000010116.y.a.b #32	ENSGT00390000010116.y.a.a ##32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025109 #7	Scrn3 (MGP_PahariEiJ_G0025110) #8	Gpr155 (MGP_PahariEiJ_G0025111) #9	Wipf1 (MGP_PahariEiJ_G0025112) #10	Chrna1 (MGP_PahariEiJ_G0025113) #11	MGP_PahariEiJ_G0025114 #12	Atf2 (MGP_PahariEiJ_G0025115) #13	Atp5g3 (MGP_PahariEiJ_G0025116) #14	Lnpk (MGP_PahariEiJ_G0025117) #15	Evx2 (MGP_PahariEiJ_G0025118) #16	Hoxd13 (MGP_PahariEiJ_G0025119) #17	Hoxd12 (MGP_PahariEiJ_G0025120) #18	Hoxd11 (MGP_PahariEiJ_G0025121) #19	Hoxd10 (MGP_PahariEiJ_G0025122) #20	Hoxd9 (MGP_PahariEiJ_G0025123) #21	Hoxd8 (MGP_PahariEiJ_G0025124) #22	Hoxd3 (MGP_PahariEiJ_G0025125) #23	Hoxd4 (MGP_PahariEiJ_G0025126) #24	MGP_PahariEiJ_G0025127 #25	Hoxd1 (MGP_PahariEiJ_G0025128) #26	Mtx2 (MGP_PahariEiJ_G0025129) #27	Hnrnpa3 (MGP_PahariEiJ_G0025130) #28	Nfe2l2 (MGP_PahariEiJ_G0025131) #29	MGP_PahariEiJ_G0025132 #30	MGP_PahariEiJ_G0025133 #31	MGP_PahariEiJ_G0025134 #32	Pde11a (MGP_PahariEiJ_G0025135) #33	Cyct (MGP_PahariEiJ_G0025136) #34	Rbm45 (MGP_PahariEiJ_G0025137) #35	Osbpl6 (MGP_PahariEiJ_G0025138) #36	Prkra (MGP_PahariEiJ_G0025139) #37
Mus_A	ANCESTRAL SPECIES		ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296 #10	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #25	ENSGT00940000160027 #23	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##28	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.y.b ##32	ENSGT00390000010116.y.a.b #32	ENSGT00390000010116.y.a.a ##32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36
Mus_B	ANCESTRAL SPECIES	1	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296 #10	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #25	ENSGT00940000160027 #23	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.y.b ##32	ENSGT00390000010116.y.a.b #32	ENSGT00390000010116.y.a.a ##32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37
Mouse	MODERN SPECIES	11	Cir1 (ENSMUSG00000041777) #7	Scrn3 (ENSMUSG00000008226) #8	Gpr155 (ENSMUSG00000041762) #9	Wipf1 (ENSMUSG00000075284) #10	Chrna1 (ENSMUSG00000027107) #11	Chn1 (ENSMUSG00000056486) #12	Atf2 (ENSMUSG00000027104) #13	Atp5g3 (ENSMUSG00000018770) #14	Lnpk (ENSMUSG00000009207) #15	Evx2 (ENSMUSG00000001815) #16	Hoxd13 (ENSMUSG00000001819) #17	Hoxd12 (ENSMUSG00000001823) #18	Hoxd11 (ENSMUSG00000042499) #19	Hoxd10 (ENSMUSG00000050368) #20	Hoxd9 (ENSMUSG00000043342) #21	Hoxd8 (ENSMUSG00000027102) #22	Hoxd3 (ENSMUSG00000079277) #23	Hoxd4 (ENSMUSG00000101174) #25	Hoxd1 (ENSMUSG00000042448) #26	Mtx2 (ENSMUSG00000027099) #27	Hnrnpa3 (ENSMUSG00000059005) ##28	Nfe2l2 (ENSMUSG00000015839) #29	Agps (ENSMUSG00000042410) #30	Ttc30b (ENSMUSG00000075273) ##32	Ttc30a2 (ENSMUSG00000075272) #32	Ttc30a1 (ENSMUSG00000075271) ##32	Pde11a (ENSMUSG00000075270) #33	Cyct (ENSMUSG00000056436) #34	Rbm45 (ENSMUSG00000042369) #35	Osbpl6 (ENSMUSG00000042359) #36	Prkra (ENSMUSG00000002731) #37
Mus_C	ANCESTRAL SPECIES		ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296 #10	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #25	ENSGT00940000160027 #23	ENSGT00940000161892 #26	ENSGT00950000182919.C #27	ENSGT00940000153147.m.b ##28	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.y.b ##32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Steppe mouse	MODERN SPECIES	3326	Gpr155 (ENSMSIG00000006975) #9	Wipf1 (ENSMSIG00000006899) #10	Chrna1 (ENSMSIG00000006852) #11	Chn1 (ENSMSIG00000006692) #12	ENSMSIG00000006659	Atf2 (ENSMSIG00000006546) #13	Atp5g3 (ENSMSIG00000006512) #14	ENSMSIG00000006495	Lnpk (ENSMSIG00000006386) #15	Evx2 (ENSMSIG00000006361) #16	Hoxd13 (ENSMSIG00000006348) #17	Hoxd12 (ENSMSIG00000006333) #18	Hoxd11 (ENSMSIG00000006326) #19	Hoxd10 (ENSMSIG00000006313) #20	Hoxd9 (ENSMSIG00000006304) #21	Hoxd8 (ENSMSIG00000006283) #22	ENSMSIG00000006186 #25	Hoxd3 (ENSMSIG00000006158) #23	Hoxd1 (ENSMSIG00000006137) #26	Mtx2 (ENSMSIG00000006053) #27	ENSMSIG00000006005	ENSMSIG00000005981	ENSMSIG00000005709 ##28	Nfe2l2 (ENSMSIG00000005673) #29
spretus	MODERN SPECIES	11	Cir1 (MGP_SPRETEiJ_G0024580) #7	Scrn3 (MGP_SPRETEiJ_G0024581) #8	Gpr155 (MGP_SPRETEiJ_G0024582) #9	Wipf1 (MGP_SPRETEiJ_G0024583) #10	Chrna1 (MGP_SPRETEiJ_G0024584) #11	Chn1 (MGP_SPRETEiJ_G0024585) #12	Atf2 (MGP_SPRETEiJ_G0024586) #13	Atp5g3 (MGP_SPRETEiJ_G0024587) #14	Lnpk (MGP_SPRETEiJ_G0024588) #15	Evx2 (MGP_SPRETEiJ_G0024589) #16	Hoxd13 (MGP_SPRETEiJ_G0024590) #17	Hoxd12 (MGP_SPRETEiJ_G0024591) #18	Hoxd11 (MGP_SPRETEiJ_G0024592) #19	Hoxd10 (MGP_SPRETEiJ_G0024593) #20	Hoxd9 (MGP_SPRETEiJ_G0024594) #21	Hoxd8 (MGP_SPRETEiJ_G0024595) #22	Hoxd3 (MGP_SPRETEiJ_G0024596) #23	Hoxd4 (MGP_SPRETEiJ_G0024597) #25	MGP_SPRETEiJ_G0024598 #25	Hoxd1 (MGP_SPRETEiJ_G0024599) #26	Mtx2 (MGP_SPRETEiJ_G0024600) #27	MGP_SPRETEiJ_G0024601 ##28	Nfe2l2 (MGP_SPRETEiJ_G0024602) #29	Agps (MGP_SPRETEiJ_G0024603) #30	MGP_SPRETEiJ_G0024604 ##32	Pde11a (MGP_SPRETEiJ_G0024605) #33	Cyct (MGP_SPRETEiJ_G0024606) #34	Rbm45 (MGP_SPRETEiJ_G0024607) #35	Osbpl6 (MGP_SPRETEiJ_G0024608) #36	Prkra (MGP_SPRETEiJ_G0024609) #37	Pjvk (MGP_SPRETEiJ_G0024610)
Ryukyu mouse	MODERN SPECIES	11	Cir1 (MGP_CAROLIEiJ_G0023657) #7	Scrn3 (MGP_CAROLIEiJ_G0023658) #8	Gpr155 (MGP_CAROLIEiJ_G0023659) #9	Wipf1 (MGP_CAROLIEiJ_G0023660) #10	Chrna1 (MGP_CAROLIEiJ_G0023661) #11	Chn1 (MGP_CAROLIEiJ_G0023662) #12	Atf2 (MGP_CAROLIEiJ_G0023663) #13	Atp5g3 (MGP_CAROLIEiJ_G0023664) #14	Lnpk (MGP_CAROLIEiJ_G0023665) #15	Evx2 (MGP_CAROLIEiJ_G0023666) #16	Hoxd13 (MGP_CAROLIEiJ_G0023667) #17	Hoxd12 (MGP_CAROLIEiJ_G0023668) #18	Hoxd11 (MGP_CAROLIEiJ_G0023669) #19	Hoxd10 (MGP_CAROLIEiJ_G0023670) #20	Hoxd9 (MGP_CAROLIEiJ_G0023671) #21	Hoxd8 (MGP_CAROLIEiJ_G0023672) #22	Hoxd3 (MGP_CAROLIEiJ_G0023673) #23	Hoxd4 (MGP_CAROLIEiJ_G0023674) #25	MGP_CAROLIEiJ_G0023675 #25	Hoxd1 (MGP_CAROLIEiJ_G0023676) #26	Mtx2 (MGP_CAROLIEiJ_G0023677) #27	MGP_CAROLIEiJ_G0023678 ##28	Nfe2l2 (MGP_CAROLIEiJ_G0023679) #29	Agps (MGP_CAROLIEiJ_G0023680) #30	MGP_CAROLIEiJ_G0023681 ##32	MGP_CAROLIEiJ_G0023682 ##32	Pde11a (MGP_CAROLIEiJ_G0023683) #33	MGP_CAROLIEiJ_G0023684	Cyct (MGP_CAROLIEiJ_G0023685) #34	Rbm45 (MGP_CAROLIEiJ_G0023686) #35	Osbpl6 (MGP_CAROLIEiJ_G0023687) #36