Amniota	ANCESTRAL SPECIES	6	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000173501	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Mammalia	ANCESTRAL SPECIES	6	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000173501	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Theria	ANCESTRAL SPECIES	5	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000173501	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Eutheria	ANCESTRAL SPECIES	10	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Glires	ANCESTRAL SPECIES	14	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Rodentia	ANCESTRAL SPECIES	14	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Muroidea	ANCESTRAL SPECIES	34	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a.a ##32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a.a ##32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a.a ##32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Prairie vole	MODERN SPECIES	12	Cir1 (ENSMOCG00000017545) #7	Scrn3 (ENSMOCG00000018966) #8	Gpr155 (ENSMOCG00000003950) #9	ENSMOCG00000014660 #10	Chrna1 (ENSMOCG00000020367) #11	Chn1 (ENSMOCG00000005574) #12	Atf2 (ENSMOCG00000015301) #13	ENSMOCG00000012786 #14	Lnpk (ENSMOCG00000022345) #15	Evx2 (ENSMOCG00000010466) #16	Hoxd13 (ENSMOCG00000014618) #17	Hoxd12 (ENSMOCG00000018953) #18	Hoxd11 (ENSMOCG00000019226) #19	Hoxd10 (ENSMOCG00000006052) #20	Hoxd9 (ENSMOCG00000005870) #21	Hoxd8 (ENSMOCG00000022746) #22	Hoxd3 (ENSMOCG00000022552) #23	Hoxd4 (ENSMOCG00000013646) #24	Hoxd1 (ENSMOCG00000014086) #25	Mtx2 (ENSMOCG00000017110) #26	ENSMOCG00000019409 #27	Nfe2l2 (ENSMOCG00000020760) #28	Agps (ENSMOCG00000017476) #29	Ttc30b (ENSMOCG00000001580) #30	ENSMOCG00000001098 #31	Ttc30a2 (ENSMOCG00000002802) #32	Pde11a (ENSMOCG00000005959) #33	Cyct (ENSMOCG00000021506) #34	Rbm45 (ENSMOCG00000017295) #35	Osbpl6 (ENSMOCG00000017155) #36	Prkra (ENSMOCG00000004548) #37
Northern American deer mouse	MODERN SPECIES	17	Scrn3 (ENSPEMG00000022424) #8	Gpr155 (ENSPEMG00000022602) #9	Wipf1 (ENSPEMG00000013848)	Chrna1 (ENSPEMG00000012571) #11	Chn1 (ENSPEMG00000022535) #12	Atf2 (ENSPEMG00000021625) #13	Atp5g3 (ENSPEMG00000023766) #14	ENSPEMG00000008662	Lnpk (ENSPEMG00000017827) #15	Evx2 (ENSPEMG00000022145) #16	Hoxd13 (ENSPEMG00000022412) #17	Hoxd12 (ENSPEMG00000019240) #18	ENSPEMG00000018816 #19	Hoxd10 (ENSPEMG00000030445) #20	Hoxd9 (ENSPEMG00000006162) #21	ENSPEMG00000028623 #22	ENSPEMG00000029322	Hoxd4 (ENSPEMG00000024627) #24	Hoxd3 (ENSPEMG00000028862) #23	Hoxd1 (ENSPEMG00000021389) #25	Mtx2 (ENSPEMG00000022093) #26	Hnrnpa3 (ENSPEMG00000021885) ##27	Nfe2l2 (ENSPEMG00000023181) #28	Agps (ENSPEMG00000010561) #29	ENSPEMG00000023662	Ttc30b (ENSPEMG00000001902) #30	Ttc30a1 (ENSPEMG00000025624) ##32	Pde11a (ENSPEMG00000021597) #33	Cyct (ENSPEMG00000028091) #34	Rbm45 (ENSPEMG00000002470) #35	Osbpl6 (ENSPEMG00000010580) #36
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00940000171387	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00940000153147.m.a.a.a.b.a.b.p ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a.a ##32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37
Chinese hamster chok1gshd	MODERN SPECIES	188	Gpr155 (ENSCGRG00001014219) #9	ENSCGRG00001021853	Chrna1 (ENSCGRG00001020291) #11	ENSCGRG00001019803	Chn1 (ENSCGRG00001019152) #12	Atf2 (ENSCGRG00001015584) #13	Atp5g3 (ENSCGRG00001012041) #14	Lnpk (ENSCGRG00001011515) #15	ENSCGRG00001006802	Evx2 (ENSCGRG00001003649) #16	Hoxd13 (ENSCGRG00001001661) #17	Hoxd12 (ENSCGRG00001000877) #18	Hoxd11 (ENSCGRG00001010386) #19	Hoxd10 (ENSCGRG00001008302) #20	Hoxd9 (ENSCGRG00001005991) #21	Hoxd8 (ENSCGRG00001013130) #22	Hoxd4 (ENSCGRG00001012360) #24	Hoxd3 (ENSCGRG00001011863) #23	Hoxd1 (ENSCGRG00001011572) #25	ENSCGRG00001014512	Mtx2 (ENSCGRG00001014247) #26	ENSCGRG00001003235	ENSCGRG00001008592 ##27	Nfe2l2 (ENSCGRG00001005715) #28	Agps (ENSCGRG00001003863) #29	Ttc30b (ENSCGRG00001002157) #30	Ttc30a1 (ENSCGRG00001000892) ##32	ENSCGRG00001003072	Pde11a (ENSCGRG00001011422) #33	Cyct (ENSCGRG00001008096) #34	Rbm45 (ENSCGRG00001005759) #35
Golden Hamster	MODERN SPECIES	618	Scrn3 (ENSMAUG00000020703) #8	Gpr155 (ENSMAUG00000019481) #9	ENSMAUG00000019796	Chrna1 (ENSMAUG00000017924) #11	Chn1 (ENSMAUG00000018455) #12	Atf2 (ENSMAUG00000018366) #13	Atp5g3 (ENSMAUG00000017685) #14	ENSMAUG00000020495	Lnpk (ENSMAUG00000018821) #15	Evx2 (ENSMAUG00000020383) #16	Hoxd13 (ENSMAUG00000017185) #17	Hoxd12 (ENSMAUG00000018416) #18	ENSMAUG00000020249 #19	Hoxd10 (ENSMAUG00000016731) #20	Hoxd9 (ENSMAUG00000018538) #21	Hoxd8 (ENSMAUG00000018092) #22	Hoxd4 (ENSMAUG00000018545) #24	Hoxd3 (ENSMAUG00000018318) #23	Hoxd1 (ENSMAUG00000018401) #25	Mtx2 (ENSMAUG00000017870) #26	ENSMAUG00000017462	Nfe2l2 (ENSMAUG00000017700) #28	Agps (ENSMAUG00000017317) #29	Pde11a (ENSMAUG00000021257) #33	Cyct (ENSMAUG00000016722) #34	Rbm45 (ENSMAUG00000016948) #35	Osbpl6 (ENSMAUG00000018609) #36	Prkra (ENSMAUG00000019631) #37	Pjvk (ENSMAUG00000018018)	Fkbp7 (ENSMAUG00000016606)	Plekha3 (ENSMAUG00000019341)
Murinae	ANCESTRAL SPECIES	1	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a.b #32	ENSGT00390000010116.y.a.a ##32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37
Mus	ANCESTRAL SPECIES	1	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a.b #32	ENSGT00390000010116.y.a.a ##32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36
Mus_A	ANCESTRAL SPECIES		ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a.b #32	ENSGT00390000010116.y.a.a ##32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36
Mus_B	ANCESTRAL SPECIES	1	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a.b #32	ENSGT00390000010116.y.a.a ##32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37
Mouse	MODERN SPECIES	11	Cir1 (ENSMUSG00000041777) #7	Scrn3 (ENSMUSG00000008226) #8	Gpr155 (ENSMUSG00000041762) #9	Wipf1 (ENSMUSG00000075284)	Chrna1 (ENSMUSG00000027107) #11	Chn1 (ENSMUSG00000056486) #12	Atf2 (ENSMUSG00000027104) #13	Atp5g3 (ENSMUSG00000018770) #14	Lnpk (ENSMUSG00000009207) #15	Evx2 (ENSMUSG00000001815) #16	Hoxd13 (ENSMUSG00000001819) #17	Hoxd12 (ENSMUSG00000001823) #18	Hoxd11 (ENSMUSG00000042499) #19	Hoxd10 (ENSMUSG00000050368) #20	Hoxd9 (ENSMUSG00000043342) #21	Hoxd8 (ENSMUSG00000027102) #22	Hoxd3 (ENSMUSG00000079277) #23	Hoxd4 (ENSMUSG00000101174) #24	Hoxd1 (ENSMUSG00000042448) #25	Mtx2 (ENSMUSG00000027099) #26	Hnrnpa3 (ENSMUSG00000059005) ##27	Nfe2l2 (ENSMUSG00000015839) #28	Agps (ENSMUSG00000042410) #29	Ttc30b (ENSMUSG00000075273) #30	Ttc30a2 (ENSMUSG00000075272) #32	Ttc30a1 (ENSMUSG00000075271) ##32	Pde11a (ENSMUSG00000075270) #33	Cyct (ENSMUSG00000056436) #34	Rbm45 (ENSMUSG00000042369) #35	Osbpl6 (ENSMUSG00000042359) #36	Prkra (ENSMUSG00000002731) #37
Mus_C	ANCESTRAL SPECIES		ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.b ##27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Steppe mouse	MODERN SPECIES	3326	Gpr155 (ENSMSIG00000006975) #9	Wipf1 (ENSMSIG00000006899)	Chrna1 (ENSMSIG00000006852) #11	Chn1 (ENSMSIG00000006692) #12	ENSMSIG00000006659	Atf2 (ENSMSIG00000006546) #13	Atp5g3 (ENSMSIG00000006512) #14	ENSMSIG00000006495	Lnpk (ENSMSIG00000006386) #15	Evx2 (ENSMSIG00000006361) #16	Hoxd13 (ENSMSIG00000006348) #17	Hoxd12 (ENSMSIG00000006333) #18	Hoxd11 (ENSMSIG00000006326) #19	Hoxd10 (ENSMSIG00000006313) #20	Hoxd9 (ENSMSIG00000006304) #21	Hoxd8 (ENSMSIG00000006283) #22	ENSMSIG00000006186 #24	Hoxd3 (ENSMSIG00000006158) #23	Hoxd1 (ENSMSIG00000006137) #25	Mtx2 (ENSMSIG00000006053) #26	ENSMSIG00000006005	ENSMSIG00000005981	ENSMSIG00000005709 ##27	Nfe2l2 (ENSMSIG00000005673) #28
spretus	MODERN SPECIES	11	Cir1 (MGP_SPRETEiJ_G0024580) #7	Scrn3 (MGP_SPRETEiJ_G0024581) #8	Gpr155 (MGP_SPRETEiJ_G0024582) #9	Wipf1 (MGP_SPRETEiJ_G0024583)	Chrna1 (MGP_SPRETEiJ_G0024584) #11	Chn1 (MGP_SPRETEiJ_G0024585) #12	Atf2 (MGP_SPRETEiJ_G0024586) #13	Atp5g3 (MGP_SPRETEiJ_G0024587) #14	Lnpk (MGP_SPRETEiJ_G0024588) #15	Evx2 (MGP_SPRETEiJ_G0024589) #16	Hoxd13 (MGP_SPRETEiJ_G0024590) #17	Hoxd12 (MGP_SPRETEiJ_G0024591) #18	Hoxd11 (MGP_SPRETEiJ_G0024592) #19	Hoxd10 (MGP_SPRETEiJ_G0024593) #20	Hoxd9 (MGP_SPRETEiJ_G0024594) #21	Hoxd8 (MGP_SPRETEiJ_G0024595) #22	Hoxd3 (MGP_SPRETEiJ_G0024596) #23	Hoxd4 (MGP_SPRETEiJ_G0024597) #24	MGP_SPRETEiJ_G0024598 #24	Hoxd1 (MGP_SPRETEiJ_G0024599) #25	Mtx2 (MGP_SPRETEiJ_G0024600) #26	MGP_SPRETEiJ_G0024601 ##27	Nfe2l2 (MGP_SPRETEiJ_G0024602) #28	Agps (MGP_SPRETEiJ_G0024603) #29	MGP_SPRETEiJ_G0024604 ##32	Pde11a (MGP_SPRETEiJ_G0024605) #33	Cyct (MGP_SPRETEiJ_G0024606) #34	Rbm45 (MGP_SPRETEiJ_G0024607) #35	Osbpl6 (MGP_SPRETEiJ_G0024608) #36	Prkra (MGP_SPRETEiJ_G0024609) #37	Pjvk (MGP_SPRETEiJ_G0024610)
Ryukyu mouse	MODERN SPECIES	11	Cir1 (MGP_CAROLIEiJ_G0023657) #7	Scrn3 (MGP_CAROLIEiJ_G0023658) #8	Gpr155 (MGP_CAROLIEiJ_G0023659) #9	Wipf1 (MGP_CAROLIEiJ_G0023660)	Chrna1 (MGP_CAROLIEiJ_G0023661) #11	Chn1 (MGP_CAROLIEiJ_G0023662) #12	Atf2 (MGP_CAROLIEiJ_G0023663) #13	Atp5g3 (MGP_CAROLIEiJ_G0023664) #14	Lnpk (MGP_CAROLIEiJ_G0023665) #15	Evx2 (MGP_CAROLIEiJ_G0023666) #16	Hoxd13 (MGP_CAROLIEiJ_G0023667) #17	Hoxd12 (MGP_CAROLIEiJ_G0023668) #18	Hoxd11 (MGP_CAROLIEiJ_G0023669) #19	Hoxd10 (MGP_CAROLIEiJ_G0023670) #20	Hoxd9 (MGP_CAROLIEiJ_G0023671) #21	Hoxd8 (MGP_CAROLIEiJ_G0023672) #22	Hoxd3 (MGP_CAROLIEiJ_G0023673) #23	Hoxd4 (MGP_CAROLIEiJ_G0023674) #24	MGP_CAROLIEiJ_G0023675 #24	Hoxd1 (MGP_CAROLIEiJ_G0023676) #25	Mtx2 (MGP_CAROLIEiJ_G0023677) #26	MGP_CAROLIEiJ_G0023678 ##27	Nfe2l2 (MGP_CAROLIEiJ_G0023679) #28	Agps (MGP_CAROLIEiJ_G0023680) #29	MGP_CAROLIEiJ_G0023681 #30	MGP_CAROLIEiJ_G0023682 #30	Pde11a (MGP_CAROLIEiJ_G0023683) #33	MGP_CAROLIEiJ_G0023684	Cyct (MGP_CAROLIEiJ_G0023685) #34	Rbm45 (MGP_CAROLIEiJ_G0023686) #35	Osbpl6 (MGP_CAROLIEiJ_G0023687) #36
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025109 #7	Scrn3 (MGP_PahariEiJ_G0025110) #8	Gpr155 (MGP_PahariEiJ_G0025111) #9	Wipf1 (MGP_PahariEiJ_G0025112)	Chrna1 (MGP_PahariEiJ_G0025113) #11	MGP_PahariEiJ_G0025114 #12	Atf2 (MGP_PahariEiJ_G0025115) #13	Atp5g3 (MGP_PahariEiJ_G0025116) #14	Lnpk (MGP_PahariEiJ_G0025117) #15	Evx2 (MGP_PahariEiJ_G0025118) #16	Hoxd13 (MGP_PahariEiJ_G0025119) #17	Hoxd12 (MGP_PahariEiJ_G0025120) #18	Hoxd11 (MGP_PahariEiJ_G0025121) #19	Hoxd10 (MGP_PahariEiJ_G0025122) #20	Hoxd9 (MGP_PahariEiJ_G0025123) #21	Hoxd8 (MGP_PahariEiJ_G0025124) #22	Hoxd3 (MGP_PahariEiJ_G0025125) #23	Hoxd4 (MGP_PahariEiJ_G0025126) #24	MGP_PahariEiJ_G0025127 #24	Hoxd1 (MGP_PahariEiJ_G0025128) #25	Mtx2 (MGP_PahariEiJ_G0025129) #26	Hnrnpa3 (MGP_PahariEiJ_G0025130) ##27	Nfe2l2 (MGP_PahariEiJ_G0025131) #28	MGP_PahariEiJ_G0025132 #29	MGP_PahariEiJ_G0025133 #32	MGP_PahariEiJ_G0025134 #32	Pde11a (MGP_PahariEiJ_G0025135) #33	Cyct (MGP_PahariEiJ_G0025136) #34	Rbm45 (MGP_PahariEiJ_G0025137) #35	Osbpl6 (MGP_PahariEiJ_G0025138) #36	Prkra (MGP_PahariEiJ_G0025139) #37
Rat	MODERN SPECIES	13	Gpr155 (ENSRNOG00000018485) #9	Wipf1 (ENSRNOG00000018406)	Rbx1-ps2 (ENSRNOG00000067031)	Chrna1 (ENSRNOG00000018286) #11	Chn1 (ENSRNOG00000017939) #12	ENSRNOG00000068403	Atf2 (ENSRNOG00000001597) #13	Atp5mc3 (ENSRNOG00000001596) #14	Lnpk (ENSRNOG00000001593) #15	Evx2 (ENSRNOG00000001589) #16	Hoxd13 (ENSRNOG00000001588) #17	Hoxd12 (ENSRNOG00000001587) #18	Hoxd11 (ENSRNOG00000069591) #19	Hoxd10 (ENSRNOG00000001581) #20	Hoxd9 (ENSRNOG00000001580) #21	Hoxd8 (ENSRNOG00000071108) #22	Hoxd4 (ENSRNOG00000001578) #24	AABR07052559.1 (ENSRNOG00000053144)	Hoxd3 (ENSRNOG00000001577) #23	Hoxd1 (ENSRNOG00000001572) #25	Mtx2 (ENSRNOG00000001559) #26	Hnrnpa3 (ENSRNOG00000052968) ##27	Nfe2l2 (ENSRNOG00000001548) #28	ENSRNOG00000066660	Agps (ENSRNOG00000001547) #29	Ttc30b (ENSRNOG00000059460) #30	Ttc30a1 (ENSRNOG00000052519) #32	Ttc30a (ENSRNOG00000069321) ##32	Cyct (ENSRNOG00000024457) #33	Rbm45 (ENSRNOG00000010595) #35	Osbpl6 (ENSRNOG00000010812) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1735	Cir1 (ENSNGAG00000023091) #7	Scrn3 (ENSNGAG00000008783) #8	Gpr155 (ENSNGAG00000019246) #9	ENSNGAG00000022478	Chrna1 (ENSNGAG00000023534) #11	Chn1 (ENSNGAG00000021893) #12	Atf2 (ENSNGAG00000003870) #13	Atp5g3 (ENSNGAG00000004748) #14	Lnpk (ENSNGAG00000023466) #15	Evx2 (ENSNGAG00000023877) #16	Hoxd13 (ENSNGAG00000023727) #17	Hoxd12 (ENSNGAG00000023455) #18	Hoxd11 (ENSNGAG00000023438) #19	Hoxd10 (ENSNGAG00000023868) #20	Hoxd9 (ENSNGAG00000011105) #21	Hoxd8 (ENSNGAG00000011799) #22	Hoxd4 (ENSNGAG00000020270) #24	Hoxd3 (ENSNGAG00000021055) #23	Hoxd1 (ENSNGAG00000021714) #25	Mtx2 (ENSNGAG00000020555) #26	ENSNGAG00000021745 ##27	Nfe2l2 (ENSNGAG00000022809) #28	Agps (ENSNGAG00000020263) #29	ENSNGAG00000022555 #32	Pde11a (ENSNGAG00000023493) #33	Cyct (ENSNGAG00000023547) #34	ENSNGAG00000021016	Rbm45 (ENSNGAG00000023886) #35	Osbpl6 (ENSNGAG00000014527) #36	Prkra (ENSNGAG00000021816) #37	Pjvk (ENSNGAG00000022020)
Kangaroo rat	MODERN SPECIES	324	ENSDORG00000008681	Sp9 (ENSDORG00000025534)	Cir1 (ENSDORG00000013676) #7	ENSDORG00000013682 #8	Gpr155 (ENSDORG00000013683) #9	ENSDORG00000027952	Chrna1 (ENSDORG00000001136) #11	Chn1 (ENSDORG00000002182) #12	Atf2 (ENSDORG00000024409) #13	Atp5g3 (ENSDORG00000012973) #14	Lnpk (ENSDORG00000015736) #15	Evx2 (ENSDORG00000009432) #16	Hoxd12 (ENSDORG00000009434) #18	ENSDORG00000029219 #19	Hoxd10 (ENSDORG00000009436) #20	ENSDORG00000027655 #22	Hoxd4 (ENSDORG00000028681) #24	Hoxd3 (ENSDORG00000029389) #23	Hoxd1 (ENSDORG00000009445) #25	Mtx2 (ENSDORG00000003848) #26	Hnrnpa3 (ENSDORG00000011155) ##27	Nfe2l2 (ENSDORG00000030173) #28	Agps (ENSDORG00000006480) #29	ENSDORG00000028567 #32	ENSDORG00000028697 #32	ENSDORG00000023150 #32	Cyct (ENSDORG00000004101) #34	Rbm45 (ENSDORG00000015831) #35	Osbpl6 (ENSDORG00000001912) #36	Prkra (ENSDORG00000013338) #37	Pjvk (ENSDORG00000013339)
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296.t	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296.t	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296.t	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Long-tailed chinchilla	MODERN SPECIES	110	KLKB1 (ENSCLAG00000016848)	F11 (ENSCLAG00000012318)	MTNR1A (ENSCLAG00000015269)	FAT1 (ENSCLAG00000013169)	ENSCLAG00000015923	ZFP42 (ENSCLAG00000011822)	TRIML2 (ENSCLAG00000011159)	TRIML1 (ENSCLAG00000014494)	LNPK (ENSCLAG00000015033) #15	EVX2 (ENSCLAG00000014389) #16	HOXD13 (ENSCLAG00000013095) #17	HOXD12 (ENSCLAG00000013058) #18	ENSCLAG00000012563 #19	HOXD10 (ENSCLAG00000012482) #20	HOXD9 (ENSCLAG00000012447) #21	ENSCLAG00000011108 #22	HOXD4 (ENSCLAG00000014461) #24	ENSCLAG00000013605 #23	HOXD1 (ENSCLAG00000012505) #25	MTX2 (ENSCLAG00000011598) #26	ENSCLAG00000011088	HNRNPA3 (ENSCLAG00000012855) ##27	NFE2L2 (ENSCLAG00000013122) #28	ENSCLAG00000012626	ENSCLAG00000013627	AGPS (ENSCLAG00000013279) #29	ENSCLAG00000017938 #32	ENSCLAG00000013714 #32	PDE11A (ENSCLAG00000013013) #33	RBM45 (ENSCLAG00000015215) #35	OSBPL6 (ENSCLAG00000011433) #36
Degu	MODERN SPECIES	106	ENSODEG00000008975	ENSODEG00000019598	CHRNA1 (ENSODEG00000010458) #11	CHN1 (ENSODEG00000008560) #12	ATF2 (ENSODEG00000010947) #13	ENSODEG00000010951 #14	ENSODEG00000010385	LNPK (ENSODEG00000010046) #15	ENSODEG00000008992	EVX2 (ENSODEG00000010771) #16	HOXD13 (ENSODEG00000008793) #17	HOXD12 (ENSODEG00000008376) #18	ENSODEG00000010934 #19	HOXD10 (ENSODEG00000010382) #20	HOXD9 (ENSODEG00000008626) #21	ENSODEG00000010496 #22	HOXD4 (ENSODEG00000010297) #24	HOXD3 (ENSODEG00000009722) #23	HOXD1 (ENSODEG00000008961) #25	ENSODEG00000008879	MTX2 (ENSODEG00000008062) #26	ENSODEG00000009697	ENSODEG00000009265	NFE2L2 (ENSODEG00000010043) #28	AGPS (ENSODEG00000008272) #29	ENSODEG00000020058 #32	ENSODEG00000019592 #32	PDE11A (ENSODEG00000010682) #33	ENSODEG00000019574	RBM45 (ENSODEG00000007959) #35	ENSODEG00000019659
Guinea pig	MODERN SPECIES	3	CIR1 (ENSCPOG00000010275) #7	SCRN3 (ENSCPOG00000010281) #8	GPR155 (ENSCPOG00000010286) #9	ENSCPOG00000034131	CHRNA1 (ENSCPOG00000000036) #11	ENSCPOG00000002789 #12	ATF2 (ENSCPOG00000004637) #13	ATP5MC3 (ENSCPOG00000040161) #14	LNPK (ENSCPOG00000010971) #15	EVX2 (ENSCPOG00000006711) #16	HOXD13 (ENSCPOG00000006722) #17	HOXD12 (ENSCPOG00000005496) #18	ENSCPOG00000019766 #19	HOXD10 (ENSCPOG00000011368) #20	HOXD9 (ENSCPOG00000015006) #21	HOXD8 (ENSCPOG00000015005) #22	HOXD4 (ENSCPOG00000036552) #24	HOXD3 (ENSCPOG00000034932) #23	HOXD1 (ENSCPOG00000005509) #25	MTX2 (ENSCPOG00000011099) #26	ENSCPOG00000027250	ENSCPOG00000004251 ##27	NFE2L2 (ENSCPOG00000031261) #28	AGPS (ENSCPOG00000000679) #29	ENSCPOG00000000681 #32	PDE11A (ENSCPOG00000000682) #33	RBM45 (ENSCPOG00000000684) #35	OSBPL6 (ENSCPOG00000002816) #36	ENSCPOG00000003900 #37	PJVK (ENSCPOG00000037882)	FKBP7 (ENSCPOG00000037159)
Naked mole-rat female	MODERN SPECIES	22	GPR155 (ENSHGLG00000012529) #9	ENSHGLG00000036822	ENSHGLG00000039411	CHRNA1 (ENSHGLG00000015432) #11	ENSHGLG00000016114 #12	ENSHGLG00000018805 #13	Atp5mc3 (ENSHGLG00000033165) #14	ENSHGLG00000040802	LNPK (ENSHGLG00000004015) #15	EVX2 (ENSHGLG00000004218) #16	HOXD13 (ENSHGLG00000050884) #17	HOXD12 (ENSHGLG00000005403) #18	HOXD11 (ENSHGLG00000034527) #19	HOXD9 (ENSHGLG00000007185) #21	HOXD10 (ENSHGLG00000033462) #20	ENSHGLG00000003577 #22	HOXD4 (ENSHGLG00000037842) #24	HOXD3 (ENSHGLG00000003761) #23	HOXD1 (ENSHGLG00000004072) #25	MTX2 (ENSHGLG00000004177) #26	ENSHGLG00000012734	ENSHGLG00000046644	ENSHGLG00000036655	HNRNPA3 (ENSHGLG00000005451) ##27	NFE2L2 (ENSHGLG00000006475) #28	AGPS (ENSHGLG00000007541) #29	ENSHGLG00000036841 #32	TTC30B (ENSHGLG00000042840) #32	ENSHGLG00000005226 #33	ENSHGLG00000006609	ENSHGLG00000007342 #35
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.xb #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Marmotini	ANCESTRAL SPECIES	2	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.xb.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.gb #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Alpin marmot	MODERN SPECIES	5	ENSMMMG00000023702 #8	GPR155 (ENSMMMG00000023705) #9	ENSMMMG00000023714	WIPF1 (ENSMMMG00000023716)	CHRNA1 (ENSMMMG00000023717) #11	CHN1 (ENSMMMG00000023718) #12	ENSMMMG00000023730	ATF2 (ENSMMMG00000023733) #13	ENSMMMG00000023748 #14	LNPK (ENSMMMG00000023755) #15	HOXD13 (ENSMMMG00000023759) #17	HOXD12 (ENSMMMG00000023760) #18	ENSMMMG00000023762 #19	HOXD10 (ENSMMMG00000023763) #20	HOXD9 (ENSMMMG00000023764) #21	ENSMMMG00000023765 #22	HOXD4 (ENSMMMG00000023767) #24	HOXD3 (ENSMMMG00000023768) #23	MTX2 (ENSMMMG00000023772) #26	NFE2L2 (ENSMMMG00000023776) #28	AGPS (ENSMMMG00000023778) #29
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.xb.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.gb #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Squirrel	MODERN SPECIES	109	OLA1 (ENSSTOG00000015547)	CIR1 (ENSSTOG00000001233) #7	SCRN3 (ENSSTOG00000001236) #8	GPR155 (ENSSTOG00000001239) #9	ENSSTOG00000004271	CHRNA1 (ENSSTOG00000004281) #11	CHN1 (ENSSTOG00000004301) #12	ATF2 (ENSSTOG00000014079) #13	ENSSTOG00000013572 #14	LNPK (ENSSTOG00000014498) #15	EVX2 (ENSSTOG00000014512) #16	HOXD13 (ENSSTOG00000004117) #17	HOXD12 (ENSSTOG00000004918) #18	HOXD10 (ENSSTOG00000003935) #20	HOXD9 (ENSSTOG00000026761) #21	ENSSTOG00000023453 #22	HOXD4 (ENSSTOG00000029055) #24	HOXD3 (ENSSTOG00000014680) #23	HOXD1 (ENSSTOG00000012230) #25	MTX2 (ENSSTOG00000014688) #26	ENSSTOG00000030884	HNRNPA3 (ENSSTOG00000025125) ##27	NFE2L2 (ENSSTOG00000000313) #28	AGPS (ENSSTOG00000012623) #29	ENSSTOG00000003267 #32	PDE11A (ENSSTOG00000012639) #33	ENSSTOG00000008853 #34	RBM45 (ENSSTOG00000002708) #35	OSBPL6 (ENSSTOG00000006092) #36	PRKRA (ENSSTOG00000006156) #37	PJVK (ENSSTOG00000028411)
Arctic ground squirrel	MODERN SPECIES	323				WIPF1 (ENSUPAG00010020649)	CHRNA1 (ENSUPAG00010020641) #11	CHN1 (ENSUPAG00010020575) #12	ATF2 (ENSUPAG00010020491) #13	ENSUPAG00010020485 #14	LNPK (ENSUPAG00010020452) #15	EVX2 (ENSUPAG00010020442) #16	HOXD13 (ENSUPAG00010020441) #17	HOXD12 (ENSUPAG00010020440) #18	HOXD11 (ENSUPAG00010020439) #19	HOXD10 (ENSUPAG00010020434) #20	HOXD9 (ENSUPAG00010020431) #21	HOXD8 (ENSUPAG00010020425) #22	HOXD4 (ENSUPAG00010020416) #24	HOXD3 (ENSUPAG00010020410) #23	HOXD1 (ENSUPAG00010020407) #25	ENSUPAG00010020400	MTX2 (ENSUPAG00010020394) #26
Eurasian red squirrel	MODERN SPECIES	12	SCRN3 (ENSSVLG00005002703) #8	GPR155 (ENSSVLG00005002750) #9	WIPF1 (ENSSVLG00005002786)	CHRNA1 (ENSSVLG00005002856) #11	CHN1 (ENSSVLG00005003041) #12	ENSSVLG00005003279 #13	ENSSVLG00005003430 #14	ENSSVLG00005003466	LNPK (ENSSVLG00005003500) #15	EVX2 (ENSSVLG00005003539) #16	HOXD13 (ENSSVLG00005003554) #17	HOXD12 (ENSSVLG00005003565) #18	HOXD11 (ENSSVLG00005003581) #19	HOXD10 (ENSSVLG00005003599) #20	HOXD9 (ENSSVLG00005003618) #21	HOXD8 (ENSSVLG00005003645) #22	HOXD4 (ENSSVLG00005003676) #24	HOXD1 (ENSSVLG00005003762) #25	MTX2 (ENSSVLG00005003812) #26	ENSSVLG00005003881 ##27	ENSSVLG00005003903 #28	AGPS (ENSSVLG00005003959) #29	ENSSVLG00005003996 #32	ENSSVLG00005004006 #32	ENSSVLG00005004018 #32	PDE11A (ENSSVLG00005004050) #33	ENSSVLG00005004113 #34	RBM45 (ENSSVLG00005004137) #35	OSBPL6 (ENSSVLG00005004465) #36	PRKRA (ENSSVLG00005005027) #37	PJVK (ENSSVLG00005005095)
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT00390000000673.b	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000164264	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Pika	MODERN SPECIES	959													ENSOPRG00000004018 #19	HOXD10 (ENSOPRG00000004038) #20	ENSOPRG00000004049 #21	HOXD8 (ENSOPRG00000004065) #22	ENSOPRG00000004081 #24	HOXD3 (ENSOPRG00000004098) #23	ENSOPRG00000004116 #25
Rabbit	MODERN SPECIES	18	SCRN3 (ENSOCUG00000011499) #8	GPR155 (ENSOCUG00000003683) #9	ENSOCUG00000036607	ENSOCUG00000005696	CHRNA1 (ENSOCUG00000024814) #11	CHN1 (ENSOCUG00000008134) #12	ATF2 (ENSOCUG00000012156) #13	ATP5MC3 (ENSOCUG00000012164) #14	LNPK (ENSOCUG00000008962) #15	EVX2 (ENSOCUG00000032776) #16	HOXD13 (ENSOCUG00000029547) #17	HOXD12 (ENSOCUG00000002412) #18	HOXD11 (ENSOCUG00000013942) #19	HOXD10 (ENSOCUG00000008964) #20	HOXD9 (ENSOCUG00000023956) #21	ENSOCUG00000035940 #22	HOXD4 (ENSOCUG00000002413) #24	HOXD3 (ENSOCUG00000014119) #23	HOXD1 (ENSOCUG00000015582) #25	MTX2 (ENSOCUG00000008760) #26	ENSOCUG00000025666	ENSOCUG00000030456	ENSOCUG00000002743 ##27	NFE2L2 (ENSOCUG00000001009) #28	AGPS (ENSOCUG00000011521) #29	ENSOCUG00000029884 #32	ENSOCUG00000039012 #32	ENSOCUG00000008038	ENSOCUG00000039559	ENSOCUG00000025342 #34	RBM45 (ENSOCUG00000001125) #35
Tree shrew	MODERN SPECIES	3966												EVX2 (ENSTBEG00000010517) #16	HOXD12 (ENSTBEG00000010799) #18	HOXD10 (ENSTBEG00000010925) #20	HOXD9 (ENSTBEG00000010979) #21	HOXD8 (ENSTBEG00000011462) #22	ENSTBEG00000011786 #25
Primates	ANCESTRAL SPECIES	13	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Mouse lemur	MODERN SPECIES	30	SCRN3 (ENSMICG00000000366) #8	GPR155 (ENSMICG00000000369) #9	ENSMICG00000031974	CHRNA1 (ENSMICG00000014284) #11	ENSMICG00000038672	CHN1 (ENSMICG00000014292) #12	ATF2 (ENSMICG00000006417) #13	ATP5MC3 (ENSMICG00000006421) #14	LNPK (ENSMICG00000027707) #15	EVX2 (ENSMICG00000035343) #16	HOXD13 (ENSMICG00000002170) #17	HOXD12 (ENSMICG00000002172) #18	HOXD11 (ENSMICG00000048033) #19	HOXD10 (ENSMICG00000028373) #20	HOXD9 (ENSMICG00000031229) #21	HOXD8 (ENSMICG00000004277) #22	HOXD4 (ENSMICG00000043209) #24	HOXD3 (ENSMICG00000004286) #23	HOXD1 (ENSMICG00000044650) #25	MTX2 (ENSMICG00000004295) #26	ENSMICG00000027841 ##27	NFE2L2 (ENSMICG00000009559) #28	AGPS (ENSMICG00000003750) #29	ENSMICG00000003768 #32	ENSMICG00000046051 #32	ENSMICG00000030225	PDE11A (ENSMICG00000003770) #33	ENSMICG00000047030 #34	RBM45 (ENSMICG00000003787) #35	OSBPL6 (ENSMICG00000003793) #36	PRKRA (ENSMICG00000009883) #37
Lemuriformes_a	ANCESTRAL SPECIES	69	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Coquerels sifaka	MODERN SPECIES	478	SCRN3 (ENSPCOG00000015456) #8	GPR155 (ENSPCOG00000014376) #9	ENSPCOG00000018466	ENSPCOG00000015733	CHRNA1 (ENSPCOG00000020642) #11	CHN1 (ENSPCOG00000018830) #12	ATF2 (ENSPCOG00000025416) #13	ATP5MC3 (ENSPCOG00000016374) #14	LNPK (ENSPCOG00000026983) #15	EVX2 (ENSPCOG00000022416) #16	HOXD13 (ENSPCOG00000018735) #17	HOXD12 (ENSPCOG00000022036) #18	HOXD11 (ENSPCOG00000015055) #19	HOXD10 (ENSPCOG00000023637) #20	HOXD9 (ENSPCOG00000026809) #21	HOXD8 (ENSPCOG00000024233) #22	HOXD4 (ENSPCOG00000018337) #24	HOXD3 (ENSPCOG00000017195) #23	HOXD1 (ENSPCOG00000024445) #25	MTX2 (ENSPCOG00000025077) #26	NFE2L2 (ENSPCOG00000007362) #28	AGPS (ENSPCOG00000018665) #29	PDE11A (ENSPCOG00000025830) #33	ENSPCOG00000025842	ENSPCOG00000028806 #34	RBM45 (ENSPCOG00000021526) #35	ENSPCOG00000005659	OSBPL6 (ENSPCOG00000010731) #36	PRKRA (ENSPCOG00000018812) #37	PJVK (ENSPCOG00000022935)	FKBP7 (ENSPCOG00000018941)
Greater bamboo lemur	MODERN SPECIES	243	SCRN3 (ENSPSMG00000024170) #8	GPR155 (ENSPSMG00000024199) #9	WIPF1 (ENSPSMG00000024219)	CHRNA1 (ENSPSMG00000024264) #11	CHN1 (ENSPSMG00000024301) #12	ATF2 (ENSPSMG00000024416) #13	ATP5MC3 (ENSPSMG00000024446) #14	LNPK (ENSPSMG00000024460) #15	ENSPSMG00000024465	EVX2 (ENSPSMG00000024469) #16	HOXD13 (ENSPSMG00000024474) #17	HOXD12 (ENSPSMG00000024476) #18	HOXD11 (ENSPSMG00000024479) #19	HOXD10 (ENSPSMG00000024482) #20	HOXD9 (ENSPSMG00000024487) #21	HOXD8 (ENSPSMG00000024501) #22	HOXD4 (ENSPSMG00000024504) #24	HOXD3 (ENSPSMG00000024507) #23	ENSPSMG00000024512	HOXD1 (ENSPSMG00000024516) #25	NNT (ENSPSMG00000024528)	PAIP1 (ENSPSMG00000024554)	ENSPSMG00000024563
Bushbaby	MODERN SPECIES	163	GPR155 (ENSOGAG00000016571) #9	WIPF1 (ENSOGAG00000016579)	CHRNA1 (ENSOGAG00000000890) #11	CHN1 (ENSOGAG00000000894) #12	ATF2 (ENSOGAG00000011373) #13	ATP5MC3 (ENSOGAG00000027578) #14	ENSOGAG00000026184	ENSOGAG00000030354	LNPK (ENSOGAG00000030372) #15	EVX2 (ENSOGAG00000025378) #16	HOXD13 (ENSOGAG00000027055) #17	HOXD12 (ENSOGAG00000015689) #18	HOXD11 (ENSOGAG00000029520) #19	HOXD10 (ENSOGAG00000015694) #20	HOXD9 (ENSOGAG00000015697) #21	HOXD8 (ENSOGAG00000015707) #22	HOXD4 (ENSOGAG00000029168) #24	HOXD3 (ENSOGAG00000015710) #23	HOXD1 (ENSOGAG00000015712) #25	MTX2 (ENSOGAG00000016422) #26	ENSOGAG00000032690	ENSOGAG00000028132 ##27	NFE2L2 (ENSOGAG00000034393) #28	AGPS (ENSOGAG00000013184) #29	ENSOGAG00000013189 #32	ENSOGAG00000013191	ENSOGAG00000026648 #34	RBM45 (ENSOGAG00000015195) #35	OSBPL6 (ENSOGAG00000013765) #36	PRKRA (ENSOGAG00000013971) #37	PJVK (ENSOGAG00000033780)
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Tarsier	MODERN SPECIES	1909																ENSTSYG00000001418 #22	HOXD4 (ENSTSYG00000032287) #24	HOXD3 (ENSTSYG00000036098) #23	MTX2 (ENSTSYG00000006401) #26
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.lb #32	ENSGT00390000010116.mb #32	ENSGT00940000162151 #33	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Cebidae	ANCESTRAL SPECIES	11	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.lb #32	ENSGT00390000010116.mb #32	ENSGT00940000162151 #33	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.lb #32	ENSGT00390000010116.mb #32	ENSGT00940000162151 #33	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Bolivian squirrel monkey	MODERN SPECIES	46	ENSSBOG00000020259 ##27	CIR1 (ENSSBOG00000028527) #7	SCRN3 (ENSSBOG00000033089) #8	GPR155 (ENSSBOG00000034957) #9	WIPF1 (ENSSBOG00000032169)	CHRNA1 (ENSSBOG00000035763) #11	CHN1 (ENSSBOG00000016307) #12	ATF2 (ENSSBOG00000025461) #13	ATP5MC3 (ENSSBOG00000022688) #14	LNPK (ENSSBOG00000023054) #15	EVX2 (ENSSBOG00000034364) #16	HOXD13 (ENSSBOG00000032579) #17	HOXD12 (ENSSBOG00000025723) #18	HOXD10 (ENSSBOG00000020553) #20	HOXD9 (ENSSBOG00000031095) #21	ENSSBOG00000029405 #22	HOXD4 (ENSSBOG00000031535) #24	HOXD3 (ENSSBOG00000031894) #23	HOXD1 (ENSSBOG00000030906) #25	MTX2 (ENSSBOG00000025795) #26	HNRNPA3 (ENSSBOG00000034307) ##27	NFE2L2 (ENSSBOG00000022740) #28	AGPS (ENSSBOG00000026720) #29	ENSSBOG00000019156 #32	ENSSBOG00000018055 #32	PDE11A (ENSSBOG00000026746) #33	RBM45 (ENSSBOG00000005469) #35	OSBPL6 (ENSSBOG00000020436) #36	ENSSBOG00000035006	PRKRA (ENSSBOG00000012105) #37	PJVK (ENSSBOG00000022982)
Capuchin	MODERN SPECIES	110	GPR155 (ENSCCAG00000032455) #9	WIPF1 (ENSCCAG00000012994)	CHRNA1 (ENSCCAG00000032209) #11	CHN1 (ENSCCAG00000027038) #12	ENSCCAG00000034541	ATF2 (ENSCCAG00000035902) #13	ENSCCAG00000020514 #14	ENSCCAG00000015947	LNPK (ENSCCAG00000022702) #15	EVX2 (ENSCCAG00000032502) #16	HOXD13 (ENSCCAG00000032945) #17	HOXD12 (ENSCCAG00000026325) #18	HOXD11 (ENSCCAG00000034968) #19	HOXD10 (ENSCCAG00000020764) #20	HOXD9 (ENSCCAG00000021007) #21	HOXD8 (ENSCCAG00000001172) #22	ENSCCAG00000035403 #24
Marmoset	MODERN SPECIES	18	WIPF1 (ENSCJAG00000048519)	CHRNA1 (ENSCJAG00000008007) #11	CHN1 (ENSCJAG00000008041) #12	ATF2 (ENSCJAG00000008085) #13	ATP5MC3 (ENSCJAG00000008207) #14	ENSCJAG00000080703	ENSCJAG00000084464	ENSCJAG00000022954	LNPK (ENSCJAG00000008226) #15	EVX2 (ENSCJAG00000077487) #16	HOXD13 (ENSCJAG00000040882) #17	HOXD12 (ENSCJAG00000079626) #18	HOXD11 (ENSCJAG00000048503) #19	HOXD10 (ENSCJAG00000008269) #20	HOXD9 (ENSCJAG00000046789) #21	HOXD8 (ENSCJAG00000008284) #22	HOXD4 (ENSCJAG00000008286) #24	HOXD3 (ENSCJAG00000063715) #23	HOXD1 (ENSCJAG00000008290) #25	MTX2 (ENSCJAG00000039174) #26	ENSCJAG00000072603	ENSCJAG00000006928 ##27	NFE2L2 (ENSCJAG00000008340) #28	ENSCJAG00000059559	ENSCJAG00000021732 #32	AGPS (ENSCJAG00000021508) #29	ENSCJAG00000081808	ENSCJAG00000081742	PDE11A (ENSCJAG00000014554) #33	ENSCJAG00000021516 #35	ENSCJAG00000072241
Mas night monkey	MODERN SPECIES	1333				ENSANAG00000011341	ENSANAG00000037338 #13	ENSANAG00000033889 #14	ENSANAG00000023367	ENSANAG00000021797	LNPK (ENSANAG00000019161) #15	EVX2 (ENSANAG00000031929) #16	HOXD13 (ENSANAG00000029500) #17	HOXD12 (ENSANAG00000008919) #18	HOXD11 (ENSANAG00000029678) #19	HOXD10 (ENSANAG00000025381) #20	HOXD9 (ENSANAG00000024699) #21	HOXD8 (ENSANAG00000026980) #22	HOXD4 (ENSANAG00000028028) #24	HOXD3 (ENSANAG00000026428) #23	HOXD1 (ENSANAG00000019775) #25	ENSANAG00000031061	MTX2 (ENSANAG00000022501) #26	HNRNPA3 (ENSANAG00000002931) ##27	NFE2L2 (ENSANAG00000023669) #28	AGPS (ENSANAG00000019626) #29	ENSANAG00000003240 #32	ENSANAG00000025414 #33
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb #32	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #34
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00390000004153 #9	ENSGT00940000167313 #10	ENSGT00390000008029.v	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb #32	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #34
Hominidae	ANCESTRAL SPECIES	17	ENSGT00390000004153 #9	ENSGT00940000167313 #10	ENSGT00390000008029.v	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb #32	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00390000004153 #9	ENSGT00940000167313 #10	ENSGT00390000008029.v	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb #32	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00390000004153 #9	ENSGT00940000167313 #10	ENSGT00390000008029.v	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb #32	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35
Pan	ANCESTRAL SPECIES	12	ENSGT00390000004153 #9	ENSGT00940000167313 #10	ENSGT00390000008029.v	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb #32	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35
Bonobo	MODERN SPECIES	15	SCRN3 (ENSPPAG00000032328) #8	GPR155 (ENSPPAG00000032733) #9	ENSPPAG00000040473	WIPF1 (ENSPPAG00000037968)	CHRNA1 (ENSPPAG00000024985) #11	ENSPPAG00000023882 #12	ATF2 (ENSPPAG00000027656) #13	ATP5MC3 (ENSPPAG00000036512) #14	LNPK (ENSPPAG00000030440) #15	ENSPPAG00000039855 #16	ENSPPAG00000010483 #17	HOXD12 (ENSPPAG00000017089) #18	ENSPPAG00000028125 #19	HOXD10 (ENSPPAG00000036046) #20	HOXD9 (ENSPPAG00000039242) #21	ENSPPAG00000034189 #22	HOXD4 (ENSPPAG00000034992) #24	HOXD3 (ENSPPAG00000031713) #23	ENSPPAG00000013988	ENSPPAG00000031665 #25	ENSPPAG00000025118	MTX2 (ENSPPAG00000043265) #26	ENSPPAG00000012679	HNRNPA3 (ENSPPAG00000023768) ##27	NFE2L2 (ENSPPAG00000037501) #28	AGPS (ENSPPAG00000036868) #29	TTC30B (ENSPPAG00000019313) #32	TTC30A (ENSPPAG00000023829) #32	PDE11A (ENSPPAG00000036387) #33	ENSPPAG00000029280	ENSPPAG00000035494 #34
Chimpanzee	MODERN SPECIES	15	CIR1 (ENSPTRG00000012652) #7	SCRN3 (ENSPTRG00000012653) #8	GPR155 (ENSPTRG00000012655) #9	WIPF1 (ENSPTRG00000012656) #10	CHRNA1 (ENSPTRG00000012658) #11	CHN1 (ENSPTRG00000012659) #12	ATF2 (ENSPTRG00000012660) #13	ATP5MC3 (ENSPTRG00000047314) #14	LNPK (ENSPTRG00000012662) #15	EVX2 (ENSPTRG00000012663) #16	HOXD13 (ENSPTRG00000012664) #17	HOXD12 (ENSPTRG00000012665) #18	HOXD11 (ENSPTRG00000012666) #19	HOXD10 (ENSPTRG00000012667) #20	HOXD9 (ENSPTRG00000043464) #21	HOXD8 (ENSPTRG00000012669) #22	HOXD4 (ENSPTRG00000051862) #24	HOXD3 (ENSPTRG00000012672) #23	ENSPTRG00000051348	HOXD1 (ENSPTRG00000052716) #25	ENSPTRG00000023851	MTX2 (ENSPTRG00000012674) #26	ENSPTRG00000042815	HNRNPA3 (ENSPTRG00000012676) ##27	NFE2L2 (ENSPTRG00000012677) #28	AGPS (ENSPTRG00000012680) #29	TTC30B (ENSPTRG00000048299) #32	TTC30A (ENSPTRG00000044238) #32	PDE11A (ENSPTRG00000012684) #33	ENSPTRG00000046153	ENSPTRG00000051577 #34
Human	MODERN SPECIES	11	CIR1 (ENSG00000138433) #7	SCRN3 (ENSG00000144306) #8	GPR155 (ENSG00000163328) #9	WIPF1 (ENSG00000115935)	CHRNA1 (ENSG00000138435) #11	CHN1 (ENSG00000128656) #12	ATF2 (ENSG00000115966) #13	ATP5MC3 (ENSG00000154518) #14	LNPK (ENSG00000144320) #15	EVX2 (ENSG00000174279) #16	HOXD13 (ENSG00000128714) #17	HOXD12 (ENSG00000170178) #18	HOXD11 (ENSG00000128713) #19	HOXD10 (ENSG00000128710) #20	HOXD9 (ENSG00000128709) #21	HOXD8 (ENSG00000175879) #22	HOXD3 (ENSG00000128652) #23	HOXD4 (ENSG00000170166) #24	HOXD1 (ENSG00000128645) #25	MTX2 (ENSG00000128654) #26	HNRNPA3 (ENSG00000170144) ##27	NFE2L2 (ENSG00000116044) #28	AGPS (ENSG00000018510) #29	TTC30B (ENSG00000196659) #32	TTC30A (ENSG00000197557) #32	PDE11A (ENSG00000128655) #33	RBM45 (ENSG00000155636) #35	OSBPL6 (ENSG00000079156) #36	PRKRA (ENSG00000180228) #37	PJVK (ENSG00000204311)	FKBP7 (ENSG00000079150)
Gorilla	MODERN SPECIES	15	SCRN3 (ENSGGOG00000034896) #8	GPR155 (ENSGGOG00000004876) #9	ENSGGOG00000005480	WIPF1 (ENSGGOG00000016773)	CHRNA1 (ENSGGOG00000008036) #11	CHN1 (ENSGGOG00000002177) #12	ATF2 (ENSGGOG00000027461) #13	ATP5MC3 (ENSGGOG00000036796) #14	LNPK (ENSGGOG00000007852) #15	EVX2 (ENSGGOG00000001335) #16	ENSGGOG00000041387 #17	ENSGGOG00000038035 #18	ENSGGOG00000044084	HOXD10 (ENSGGOG00000001341) #20	HOXD9 (ENSGGOG00000001343) #21	ENSGGOG00000009898 #22	HOXD4 (ENSGGOG00000042533) #24	HOXD3 (ENSGGOG00000037089) #23	ENSGGOG00000037792	HOXD1 (ENSGGOG00000001348) #25	ENSGGOG00000041480	ENSGGOG00000040635 #18	ENSGGOG00000040237 #17	MTX2 (ENSGGOG00000044125) #26	ENSGGOG00000037084 #8	ENSGGOG00000043877	HNRNPA3 (ENSGGOG00000006130) ##27	NFE2L2 (ENSGGOG00000001231) #28	ENSGGOG00000037000	AGPS (ENSGGOG00000012114) #29	TTC30A (ENSGGOG00000009811) #32
Orangutan	MODERN SPECIES	15	ENSPPYG00000012946 #8	GPR155 (ENSPPYG00000012947) #9	WIPF1 (ENSPPYG00000012948)	CHRNA1 (ENSPPYG00000012949) #11	CHN1 (ENSPPYG00000012950) #12	ATF2 (ENSPPYG00000012951) #13	ENSPPYG00000041465	ATP5MC3 (ENSPPYG00000037033) #14	LNPK (ENSPPYG00000032630) #15	EVX2 (ENSPPYG00000012955) #16	HOXD13 (ENSPPYG00000012956) #17	HOXD12 (ENSPPYG00000012957) #18	HOXD11 (ENSPPYG00000031598) #19	HOXD10 (ENSPPYG00000012958) #20	HOXD9 (ENSPPYG00000012959) #21	HOXD8 (ENSPPYG00000037201) #22	HOXD4 (ENSPPYG00000034536) #24	HOXD3 (ENSPPYG00000012963) #23	HOXD1 (ENSPPYG00000012964) #25	ENSPPYG00000037565	MTX2 (ENSPPYG00000012966) #26	HNRNPA3 (ENSPPYG00000012967) ##27	NFE2L2 (ENSPPYG00000012968) #28	AGPS (ENSPPYG00000012969) #29	TTC30B (ENSPPYG00000034101) #32	TTC30A (ENSPPYG00000038583) #32	PDE11A (ENSPPYG00000012972) #33	RBM45 (ENSPPYG00000012974) #35	OSBPL6 (ENSPPYG00000012975) #36	ENSPPYG00000012976 #37	PJVK (ENSPPYG00000012977)
Gibbon	MODERN SPECIES	14	SCRN3 (ENSNLEG00000005880) #8	GPR155 (ENSNLEG00000005896) #9	ENSNLEG00000033625	WIPF1 (ENSNLEG00000005907)	CHRNA1 (ENSNLEG00000005914) #11	CHN1 (ENSNLEG00000005923) #12	ENSNLEG00000028605	ATF2 (ENSNLEG00000005938) #13	ATP5MC3 (ENSNLEG00000005971) #14	LNPK (ENSNLEG00000005977) #15	EVX2 (ENSNLEG00000005999) #16	HOXD13 (ENSNLEG00000029303) #17	HOXD12 (ENSNLEG00000006006) #18	HOXD10 (ENSNLEG00000006010) #20	HOXD9 (ENSNLEG00000006011) #21	ENSNLEG00000006003 #22	HOXD4 (ENSNLEG00000006014) #24	HOXD3 (ENSNLEG00000006018) #23	ENSNLEG00000027160	HOXD1 (ENSNLEG00000006019) #25	MTX2 (ENSNLEG00000006020) #26	ENSNLEG00000035565	ENSNLEG00000029348	HNRNPA3 (ENSNLEG00000028401) ##27	NFE2L2 (ENSNLEG00000006029) #28	AGPS (ENSNLEG00000006030) #29	TTC30B (ENSNLEG00000033307) #32	TTC30A (ENSNLEG00000030979) #32	PDE11A (ENSNLEG00000006056) #33	ENSNLEG00000030325	RBM45 (ENSNLEG00000006080) #35
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb #32	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #34
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb #32	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00940000165163	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #15	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb #32	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35
Macaca	ANCESTRAL SPECIES	15	ENSGT00940000165163	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00390000018390.jc.n	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb #32	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00940000168702	ENSGT00680000100059 #35	ENSGT00940000156791 #36
Pig-tailed macaque	MODERN SPECIES	585	WIPF1 (ENSMNEG00000045560)	CHRNA1 (ENSMNEG00000043912) #11	ENSMNEG00000009103	CHN1 (ENSMNEG00000033120) #12	ATF2 (ENSMNEG00000037988) #13	ATP5MC3 (ENSMNEG00000029106) #14	ENSMNEG00000035184	LNPK (ENSMNEG00000028702) #15	ENSMNEG00000024050	EVX2 (ENSMNEG00000028323) #16	HOXD13 (ENSMNEG00000027142) #17	HOXD12 (ENSMNEG00000002891) #18	HOXD11 (ENSMNEG00000029127) #19	HOXD10 (ENSMNEG00000033923) #20	HOXD9 (ENSMNEG00000044938) #21	HOXD8 (ENSMNEG00000028133) #22	HOXD4 (ENSMNEG00000030845) #24	HOXD3 (ENSMNEG00000040202) #23	ENSMNEG00000018849	HOXD1 (ENSMNEG00000010514) #25	MTX2 (ENSMNEG00000032881) #26	ENSMNEG00000026533	ENSMNEG00000034936 ##27	NFE2L2 (ENSMNEG00000028208) #28	AGPS (ENSMNEG00000043672) #29	TTC30B (ENSMNEG00000011632) #32	TTC30A (ENSMNEG00000000192) #32	PDE11A (ENSMNEG00000037080) #33
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00390000004153 #9	ENSGT00940000166143.A.a.b.b.b.b.a.b.b	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.j	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000170471.B.a.a.a	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb #32	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00940000168702	ENSGT00680000100059 #35
Crab-eating macaque	MODERN SPECIES	3	ENSMFAG00000039499	ENSMFAG00000060672	WIPF1 (ENSMFAG00000034165)	CHRNA1 (ENSMFAG00000042992) #11	CHN1 (ENSMFAG00000002404) #12	ATF2 (ENSMFAG00000002278) #13	ATP5MC3 (ENSMFAG00000056189) #14	ENSMFAG00000002936	LNPK (ENSMFAG00000002105) #15	ENSMFAG00000053875	HOXD13 (ENSMFAG00000033237) #17	HOXD12 (ENSMFAG00000051547) #18	ENSMFAG00000043724 #19	HOXD10 (ENSMFAG00000031117) #20	HOXD9 (ENSMFAG00000000099) #21	HOXD8 (ENSMFAG00000065214) #22	HOXD4 (ENSMFAG00000052240) #24	HOXD3 (ENSMFAG00000034065) #23	ENSMFAG00000047422	HOXD1 (ENSMFAG00000046035) #25	MTX2 (ENSMFAG00000026822) #26	ENSMFAG00000065500	ENSMFAG00000058081	HNRNPA3 (ENSMFAG00000000823) ##27	NFE2L2 (ENSMFAG00000041108) #28	AGPS (ENSMFAG00000038904) #29	TTC30B (ENSMFAG00000057741) #32	TTC30A (ENSMFAG00000053112) #32	PDE11A (ENSMFAG00000042268) #33	ENSMFAG00000034055	RBM45 (ENSMFAG00000042524) #35
Rhesus	MODERN SPECIES	3	SCRN3 (ENSMMUG00000023009) #8	GPR155 (ENSMMUG00000021012) #9	ENSMMUG00000053004	WIPF1 (ENSMMUG00000009593)	CHRNA1 (ENSMMUG00000021796) #11	CHN1 (ENSMMUG00000021797) #12	ATF2 (ENSMMUG00000003947) #13	ATP5MC3 (ENSMMUG00000003954) #14	LNPK (ENSMMUG00000023498) #15	EVX2 (ENSMMUG00000061506) #16	HOXD13 (ENSMMUG00000055831) #17	HOXD12 (ENSMMUG00000023501) #18	HOXD11 (ENSMMUG00000047915) #19	HOXD10 (ENSMMUG00000046368) #20	HOXD9 (ENSMMUG00000032599) #21	HOXD8 (ENSMMUG00000023504) #22	HOXD4 (ENSMMUG00000060947) #24	HOXD3 (ENSMMUG00000051761) #23	ENSMMUG00000052177	HOXD1 (ENSMMUG00000065344) #25	MTX2 (ENSMMUG00000010185) #26	ENSMMUG00000031367	ENSMMUG00000054983	ENSMMUG00000062299	HNRNPA3 (ENSMMUG00000001858) ##27	NFE2L2 (ENSMMUG00000001861) #28	ENSMMUG00000065205	AGPS (ENSMMUG00000008502) #29	TTC30B (ENSMMUG00000043597) #32	TTC30A (ENSMMUG00000041827) #32	PDE11A (ENSMMUG00000002011) #33
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b	ENSGT00950000182827.A.j	ENSGT00390000001859 #15	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb #32	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35
Olive baboon	MODERN SPECIES	1	SCRN3 (ENSPANG00000001316) #8	GPR155 (ENSPANG00000006559) #9	WIPF1 (ENSPANG00000019541)	CHRNA1 (ENSPANG00000007790) #11	CHN1 (ENSPANG00000008236) #12	ENSPANG00000005473	ATF2 (ENSPANG00000004806) #13	ATP5MC3 (ENSPANG00000031591) #14	LNPK (ENSPANG00000011787) #15	ENSPANG00000039545 #16	ENSPANG00000044695 #17	ENSPANG00000044332 #18	HOXD11 (ENSPANG00000049530) #19	HOXD10 (ENSPANG00000050198) #20	HOXD9 (ENSPANG00000001061) #21	HOXD8 (ENSPANG00000049199) #22	HOXD4 (ENSPANG00000000542) #24	HOXD3 (ENSPANG00000000543) #23	HOXD1 (ENSPANG00000009593) #25	MTX2 (ENSPANG00000013333) #26	ENSPANG00000045287	ENSPANG00000018337 ##27	NFE2L2 (ENSPANG00000039361) #28	AGPS (ENSPANG00000004764) #29	TTC30B (ENSPANG00000046724) #32	TTC30A (ENSPANG00000041839) #32	PDE11A (ENSPANG00000025222) #33	ENSPANG00000029672	RBM45 (ENSPANG00000016088) #35	ENSPANG00000046096	OSBPL6 (ENSPANG00000016378) #36
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b	ENSGT00950000182827.A.j	ENSGT00390000001859 #15	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb #32	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35
Sooty mangabey	MODERN SPECIES	570	CHRNA1 (ENSCATG00000030584) #11	CHN1 (ENSCATG00000036640) #12	ENSCATG00000035911	ATF2 (ENSCATG00000005694) #13	ATP5MC3 (ENSCATG00000035329) #14	ENSCATG00000037951	ENSCATG00000041432	LNPK (ENSCATG00000039052) #15	ENSCATG00000005782	EVX2 (ENSCATG00000038250) #16	HOXD13 (ENSCATG00000031889) #17	HOXD12 (ENSCATG00000032043) #18	HOXD10 (ENSCATG00000032256) #20	HOXD11 (ENSCATG00000031157) #19	HOXD9 (ENSCATG00000037190) #21	HOXD8 (ENSCATG00000032148) #22	HOXD4 (ENSCATG00000041719) #24	HOXD3 (ENSCATG00000029355) #23	ENSCATG00000032250	HOXD1 (ENSCATG00000032397) #25	MTX2 (ENSCATG00000039959) #26	ENSCATG00000022731	HNRNPA3 (ENSCATG00000032162) ##27	ENSCATG00000001855	NFE2L2 (ENSCATG00000036834) #28	AGPS (ENSCATG00000038387) #29	TTC30B (ENSCATG00000004635) #32	TTC30A (ENSCATG00000000123) #32	PDE11A (ENSCATG00000042325) #33	ENSCATG00000008317	ENSCATG00000039319 #34
Drill	MODERN SPECIES	1072	ENSMLEG00000029654	WIPF1 (ENSMLEG00000001484)	CHRNA1 (ENSMLEG00000043089) #11	ENSMLEG00000000615	CHN1 (ENSMLEG00000032406) #12	ATF2 (ENSMLEG00000035167) #13	ATP5MC3 (ENSMLEG00000043816) #14	ENSMLEG00000001270	LNPK (ENSMLEG00000033659) #15	EVX2 (ENSMLEG00000035528) #16	HOXD13 (ENSMLEG00000031532) #17	HOXD12 (ENSMLEG00000032533) #18	ENSMLEG00000030792 #19	HOXD10 (ENSMLEG00000044067) #20	HOXD9 (ENSMLEG00000025695) #21	ENSMLEG00000042507 #22	HOXD4 (ENSMLEG00000024188) #24	HOXD3 (ENSMLEG00000037278) #23	HOXD1 (ENSMLEG00000035890) #25	MTX2 (ENSMLEG00000002029) #26	NFE2L2 (ENSMLEG00000042705) #28	AGPS (ENSMLEG00000033858) #29	TTC30B (ENSMLEG00000027894) #32	TTC30A (ENSMLEG00000027775) #32	ENSMLEG00000039892	ENSMLEG00000035955	PDE11A (ENSMLEG00000044286) #33	RBM45 (ENSMLEG00000042404) #35	OSBPL6 (ENSMLEG00000021439) #36	PRKRA (ENSMLEG00000019578) #37	PJVK (ENSMLEG00000027972)
Vervet Monkey	MODERN SPECIES	1	SP9 (ENSCSAG00000014648)	CIR1 (ENSCSAG00000014627) #7	SCRN3 (ENSCSAG00000014584) #8	GPR155 (ENSCSAG00000014572) #9	WIPF1 (ENSCSAG00000014556)	CHRNA1 (ENSCSAG00000014545) #11	CHN1 (ENSCSAG00000014539) #12	ATF2 (ENSCSAG00000014523) #13	LNPK (ENSCSAG00000014506) #15	EVX2 (ENSCSAG00000014486) #16	HOXD13 (ENSCSAG00000014475) #17	HOXD12 (ENSCSAG00000014464) #18	HOXD11 (ENSCSAG00000014457) #19	HOXD10 (ENSCSAG00000014448) #20	HOXD9 (ENSCSAG00000014441) #21	HOXD8 (ENSCSAG00000014437) #22	HOXD4 (ENSCSAG00000014429) #24	HOXD3 (ENSCSAG00000014422) #23	HOXD1 (ENSCSAG00000014419) #25	MTX2 (ENSCSAG00000014412) #26	ENSCSAG00000014399 ##27	NFE2L2 (ENSCSAG00000014353) #28	AGPS (ENSCSAG00000014345) #29	TTC30A (ENSCSAG00000018651) #32	PDE11A (ENSCSAG00000014313) #33	ENSCSAG00000014240	RBM45 (ENSCSAG00000014231) #35	OSBPL6 (ENSCSAG00000014221) #36	PJVK (ENSCSAG00000014212)	FKBP7 (ENSCSAG00000014194)	PLEKHA3 (ENSCSAG00000014182)
Rhinopithecus	ANCESTRAL SPECIES	148						ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b	ENSGT00390000001859.c #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00940000154301.`b.a	ENSGT00960000186717.a	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00910000148248	ENSGT00940000168702
Golden snub-nosed monkey	MODERN SPECIES	722								ENSRROG00000041768 #15	ENSRROG00000044546	EVX2 (ENSRROG00000044705) #16	HOXD13 (ENSRROG00000040419) #17	HOXD12 (ENSRROG00000043268) #18	ENSRROG00000043226 #19	HOXD9 (ENSRROG00000032216) #21	HOXD10 (ENSRROG00000036162) #20	ENSRROG00000024611 #22	HOXD4 (ENSRROG00000026646) #24	HOXD3 (ENSRROG00000044509) #23	HOXD1 (ENSRROG00000035364) #25	ENSRROG00000038369	ENSRROG00000042876	ENSRROG00000020854	MTX2 (ENSRROG00000030249) #26	ENSRROG00000028794 ##27	NFE2L2 (ENSRROG00000045317) #28	AGPS (ENSRROG00000035068) #29	TTC30A (ENSRROG00000023478) #32	PDE11A (ENSRROG00000028809) #33	ENSRROG00000041594	RBM45 (ENSRROG00000031398) #35	OSBPL6 (ENSRROG00000036096) #36
Black snub-nosed monkey	MODERN SPECIES	241							ATF2 (ENSRBIG00000041657) #13	ATP5MC3 (ENSRBIG00000040343) #14	ENSRBIG00000038159	LNPK (ENSRBIG00000038235) #15	HOXD13 (ENSRBIG00000033719) #17	ENSRBIG00000035253 #19	HOXD12 (ENSRBIG00000040792) #18	HOXD10 (ENSRBIG00000030470) #20	HOXD9 (ENSRBIG00000035340) #21	HOXD8 (ENSRBIG00000036417) #22	HOXD4 (ENSRBIG00000027637) #24	HOXD3 (ENSRBIG00000044829) #23	HOXD1 (ENSRBIG00000031297) #25	ENSRBIG00000032024	ENSRBIG00000042767	MTX2 (ENSRBIG00000043097) #26	ENSRBIG00000012615 ##27	NFE2L2 (ENSRBIG00000042825) #28	AGPS (ENSRBIG00000039582) #29	TTC30A (ENSRBIG00000041155) #32	ENSRBIG00000030274	ENSRBIG00000035583	PDE11A (ENSRBIG00000043623) #33	RBM45 (ENSRBIG00000033680) #35	OSBPL6 (ENSRBIG00000040280) #36
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Suina	ANCESTRAL SPECIES	3	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a.e #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00390000010491.kb.a	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Chacoan peccary	MODERN SPECIES	88	SCRN3 (ENSCWAG00000015324) #8	GPR155 (ENSCWAG00000015434) #9	WIPF1 (ENSCWAG00000000086)	CHRNA1 (ENSCWAG00000000173) #11	CHN1 (ENSCWAG00000000417) #12	ATF2 (ENSCWAG00000000507) #13	ENSCWAG00000000620 #14	LNPK (ENSCWAG00000000637) #15	ENSCWAG00000000677	EVX2 (ENSCWAG00000000686) #16	HOXD13 (ENSCWAG00000000704) #17	HOXD12 (ENSCWAG00000000716) #18	HOXD11 (ENSCWAG00000000728) #19	HOXD10 (ENSCWAG00000000737) #20	HOXD9 (ENSCWAG00000000750) #21	HOXD8 (ENSCWAG00000000766) #22	HOXD4 (ENSCWAG00000000799) #24	HOXD3 (ENSCWAG00000000815) #23	HOXD1 (ENSCWAG00000000831) #25	MTX2 (ENSCWAG00000000848) #26	HNRNPA3 (ENSCWAG00000000880) ##27	NFE2L2 (ENSCWAG00000000916) #28	AGPS (ENSCWAG00000000957) #29	PDE11A (ENSCWAG00000001000) #33	ENSCWAG00000001084 #34	RBM45 (ENSCWAG00000001104) #35	OSBPL6 (ENSCWAG00000001227) #36	PRKRA (ENSCWAG00000001459) #37	PJVK (ENSCWAG00000001480)	FKBP7 (ENSCWAG00000001502)	PLEKHA3 (ENSCWAG00000001517)
Pig	MODERN SPECIES	6	GPR155 (ENSSSCG00000015965) #9	ENSSSCG00000027348	CHRNA1 (ENSSSCG00000015969) #11	ENSSSCG00000022345 #12	ATF2 (ENSSSCG00000038076) #13	ATP5MC3 (ENSSSCG00000015973) #14	LNPK (ENSSSCG00000015976) #15	ENSSSCG00000039002	ENSSSCG00000053760	EVX2 (ENSSSCG00000023146) #16	HOXD13 (ENSSSCG00000057890) #17	HOXD12 (ENSSSCG00000015980) #18	HOXD11 (ENSSSCG00000034741) #19	HOXD10 (ENSSSCG00000015981) #20	HOXD9 (ENSSSCG00000015982) #21	HOXD8 (ENSSSCG00000040349) #22	HOXD4 (ENSSSCG00000015984) #24	HOXD3 (ENSSSCG00000015985) #23	HOXD1 (ENSSSCG00000015986) #25	MTX2 (ENSSSCG00000022222) #26	ENSSSCG00000015988 ##27	NFE2L2 (ENSSSCG00000015987) #28	AGPS (ENSSSCG00000023983) #29	PDE11A (ENSSSCG00000038903) #33	ENSSSCG00000047774	RBM45 (ENSSSCG00000015996) #35	OSBPL6 (ENSSSCG00000023133) #36	PRKRA (ENSSSCG00000038254) #37	PJVK (ENSSSCG00000015998)	FKBP7 (ENSSSCG00000015999)	PLEKHA3 (ENSSSCG00000049025)
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #32	ENSGT00390000010116.fc.b #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Camelidae	ANCESTRAL SPECIES	16	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.b #32	ENSGT00940000162151 #33	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.A.a.a.a.b.c.a
Arabian camel	MODERN SPECIES	31	CIR1 (ENSCDRG00005001834) #7	SCRN3 (ENSCDRG00005001860) #8	GPR155 (ENSCDRG00005001897) #9	ENSCDRG00005001936	CHRNA1 (ENSCDRG00005001973) #11	CHN1 (ENSCDRG00005002091) #12	ATF2 (ENSCDRG00005002159) #13	ATP5MC3 (ENSCDRG00005002307) #14	LNPK (ENSCDRG00005002325) #15	EVX2 (ENSCDRG00005002358) #16	HOXD13 (ENSCDRG00005002411) #17	HOXD12 (ENSCDRG00005002432) #18	HOXD11 (ENSCDRG00005002440) #19	HOXD10 (ENSCDRG00005002456) #20	HOXD9 (ENSCDRG00005002467) #21	HOXD8 (ENSCDRG00005002477) #22	HOXD4 (ENSCDRG00005002497) #24	HOXD3 (ENSCDRG00005002512) #23	MTX2 (ENSCDRG00005002532) #26	HNRNPA3 (ENSCDRG00005002567) ##27	NFE2L2 (ENSCDRG00005002588) #28	AGPS (ENSCDRG00005002612) #29	ENSCDRG00005002654 #32	ENSCDRG00005002663 #32	PDE11A (ENSCDRG00005002676) #33	RBM45 (ENSCDRG00005002693) #35	OSBPL6 (ENSCDRG00005002764) #36	ENSCDRG00005002982	PRKRA (ENSCDRG00005002991) #37	PJVK (ENSCDRG00005003020)	FKBP7 (ENSCDRG00005003026)
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #32	ENSGT00390000010116.fc.b #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Cetacea	ANCESTRAL SPECIES	14	ENSGT00730000111135.j #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00940000171387	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #32	ENSGT00390000010116.fc.b #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##27	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #32	ENSGT00390000010116.fc.b #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##27	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #32	ENSGT00390000010116.fc.b #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37
Dolphin	MODERN SPECIES	804											LNPK (ENSTTRG00000013765) #15	EVX2 (ENSTTRG00000013768) #16	HOXD13 (ENSTTRG00000013771) #17	HOXD12 (ENSTTRG00000013772) #18	HOXD9 (ENSTTRG00000013773) #21	HOXD8 (ENSTTRG00000013777) #22	HOXD4 (ENSTTRG00000013778) #24	HOXD3 (ENSTTRG00000013779) #23
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00390000004153 #9	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000008142.t	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #32	ENSGT00390000010116.fc.b #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Vaquita	MODERN SPECIES	18	ENSPSNG00000006580 #9	ENSPSNG00000006539	CHRNA1 (ENSPSNG00000006481) #11	CHN1 (ENSPSNG00000006315) #12	ATF2 (ENSPSNG00000006111) #13	ATP5MC3 (ENSPSNG00000006024) #14	ENSPSNG00000005869	ENSPSNG00000005846	LNPK (ENSPSNG00000005786) #15	EVX2 (ENSPSNG00000005734) #16	HOXD13 (ENSPSNG00000005715) #17	HOXD12 (ENSPSNG00000005695) #18	HOXD11 (ENSPSNG00000005666) #19	HOXD10 (ENSPSNG00000005654) #20	HOXD9 (ENSPSNG00000005639) #21	HOXD8 (ENSPSNG00000005602) #22	HOXD4 (ENSPSNG00000005556) #24	HOXD3 (ENSPSNG00000005539) #23	HOXD1 (ENSPSNG00000005524) #25	MTX2 (ENSPSNG00000005488) #26	ENSPSNG00000005439 ##27	NFE2L2 (ENSPSNG00000005384) #28	AGPS (ENSPSNG00000005315) #29	ENSPSNG00000005284 #32	ENSPSNG00000007902 #32	PDE11A (ENSPSNG00000007618) #33	ENSPSNG00000007564 #34	RBM45 (ENSPSNG00000007527) #35	OSBPL6 (ENSPSNG00000007225) #36	PRKRA (ENSPSNG00000007030) #37	PJVK (ENSPSNG00000006966)
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000008142.t	ENSGT00950000182834.A.a.a.t	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #32	ENSGT00390000010116.fc.b #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Beluga whale	MODERN SPECIES	84	WIPF1 (ENSDLEG00000008289)	ENSDLEG00000008360	CHRNA1 (ENSDLEG00000008433) #11	CHN1 (ENSDLEG00000008654) #12	ATF2 (ENSDLEG00000008726) #13	ATP5G3 (ENSDLEG00000008800) #14	ENSDLEG00000008837	ENSDLEG00000008854	LNPK (ENSDLEG00000008885) #15	EVX2 (ENSDLEG00000008943) #16	HOXD13 (ENSDLEG00000009014) #17	HOXD12 (ENSDLEG00000009038) #18	ENSDLEG00000009052 #19	HOXD10 (ENSDLEG00000009076) #20	HOXD9 (ENSDLEG00000009091) #21	HOXD8 (ENSDLEG00000009104) #22	HOXD4 (ENSDLEG00000009166) #24	HOXD3 (ENSDLEG00000009171) #23	HOXD1 (ENSDLEG00000009181) #25	MTX2 (ENSDLEG00000009199) #26	ENSDLEG00000009227 ##27	NFE2L2 (ENSDLEG00000009266) #28	AGPS (ENSDLEG00000009335) #29	ENSDLEG00000009463 #32	ENSDLEG00000009469 #32	ENSDLEG00000009481 #33	ENSDLEG00000009493 #34	RBM45 (ENSDLEG00000009507) #35	OSBPL6 (ENSDLEG00000009570) #36	PRKRA (ENSDLEG00000009768) #37	PJVK (ENSDLEG00000009801)
Narwhal	MODERN SPECIES	302	ENSMMNG00015008159	ENSMMNG00015008133	CHRNA1 (ENSMMNG00015008057) #11	CHN1 (ENSMMNG00015007913) #12	ATF2 (ENSMMNG00015007777) #13	ATP5MC3 (ENSMMNG00015007729) #14	ENSMMNG00015007699	ENSMMNG00015007684	LNPK (ENSMMNG00015007647) #15	EVX2 (ENSMMNG00015007622) #16	HOXD13 (ENSMMNG00015007609) #17	HOXD12 (ENSMMNG00015007598) #18	ENSMMNG00015007589 #19	HOXD10 (ENSMMNG00015007571) #20	HOXD9 (ENSMMNG00015007556) #21	HOXD8 (ENSMMNG00015007526) #22	HOXD4 (ENSMMNG00015007477) #24	HOXD3 (ENSMMNG00015007460) #23	HOXD1 (ENSMMNG00015007440) #25	MTX2 (ENSMMNG00015007394) #26	ENSMMNG00015007339 ##27	NFE2L2 (ENSMMNG00015007306) #28	AGPS (ENSMMNG00015007255) #29	ENSMMNG00015007232 #32	ENSMMNG00015007201 #32	ENSMMNG00015014296	PDE11A (ENSMMNG00015014260) #33	ENSMMNG00015014238 #34	RBM45 (ENSMMNG00015014220) #35	OSBPL6 (ENSMMNG00015014111) #36	PRKRA (ENSMMNG00015014019) #37
Sperm whale	MODERN SPECIES	11	SCRN3 (ENSPCTG00005005779) #8	GPR155 (ENSPCTG00005005831) #9	WIPF1 (ENSPCTG00005005895)	ENSPCTG00005005929	CHRNA1 (ENSPCTG00005005965) #11	CHN1 (ENSPCTG00005006263) #12	ATF2 (ENSPCTG00005007004) #13	ATP5MC3 (ENSPCTG00005007202) #14	LNPK (ENSPCTG00005007293) #15	EVX2 (ENSPCTG00005007330) #16	HOXD13 (ENSPCTG00005007354) #17	HOXD12 (ENSPCTG00005007367) #18	ENSPCTG00005007381 #19	HOXD10 (ENSPCTG00005007393) #20	HOXD9 (ENSPCTG00005007399) #21	HOXD8 (ENSPCTG00005007418) #22	HOXD4 (ENSPCTG00005007493) #24	HOXD3 (ENSPCTG00005007508) #23	HOXD1 (ENSPCTG00005007516) #25	MTX2 (ENSPCTG00005007528) #26	ENSPCTG00005003466 ##27	NFE2L2 (ENSPCTG00005003486) #28	AGPS (ENSPCTG00005003530) #29	ENSPCTG00005003590 #32	ENSPCTG00005003599 #32	PDE11A (ENSPCTG00005003616) #33	ENSPCTG00005003686 #34	RBM45 (ENSPCTG00005003694) #35	OSBPL6 (ENSPCTG00005003757) #36	PJVK (ENSPCTG00005003934)	PRKRA (ENSPCTG00005003951) #37
Blue whale	MODERN SPECIES	18	SCRN3 (ENSBMSG00010005522) #8	GPR155 (ENSBMSG00010005540) #9	ENSBMSG00010005563	ENSBMSG00010005581	CHRNA1 (ENSBMSG00010005615) #11	CHN1 (ENSBMSG00010005726) #12	ATF2 (ENSBMSG00010005883) #13	ATP5MC3 (ENSBMSG00010005937) #14	LNPK (ENSBMSG00010005955) #15	EVX2 (ENSBMSG00010005974) #16	HOXD13 (ENSBMSG00010005980) #17	HOXD12 (ENSBMSG00010005987) #18	HOXD11 (ENSBMSG00010005993) #19	HOXD10 (ENSBMSG00010006002) #20	HOXD9 (ENSBMSG00010006014) #21	HOXD8 (ENSBMSG00010006022) #22	HOXD4 (ENSBMSG00010006036) #24	HOXD3 (ENSBMSG00010006046) #23	HOXD1 (ENSBMSG00010006055) #25	MTX2 (ENSBMSG00010006100) #26	ENSBMSG00010006149 ##27	NFE2L2 (ENSBMSG00010006157) #28	AGPS (ENSBMSG00010006175) #29	ENSBMSG00010006193 #32	ENSBMSG00010006199 #32	PDE11A (ENSBMSG00010006216) #33	ENSBMSG00010006255	ENSBMSG00010006266 #34	RBM45 (ENSBMSG00010006279) #35	OSBPL6 (ENSBMSG00010006347) #36	PRKRA (ENSBMSG00010006442) #37
Pecora	ANCESTRAL SPECIES	24	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #32	ENSGT00390000010116.fc.b #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Percora_a	ANCESTRAL SPECIES	5	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #32	ENSGT00390000010116.fc.b #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Bovidae	ANCESTRAL SPECIES	8	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #32	ENSGT00390000010116.fc.b #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Bovinae	ANCESTRAL SPECIES	5	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #32	ENSGT00390000010116.fc.b #32	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37
Bos	ANCESTRAL SPECIES	6	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a ##27	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #32	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #32	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35
Bos_a	ANCESTRAL SPECIES	4	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #32	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37
Wild yak	MODERN SPECIES	2654										LNPK (ENSBMUG00000015713) #15	ENSBMUG00000015669	ENSBMUG00000015650	HOXD13 (ENSBMUG00000015639) #17	HOXD12 (ENSBMUG00000015618) #18	HOXD10 (ENSBMUG00000015601) #20	ENSBMUG00000015587 #22	HOXD3 (ENSBMUG00000015572) #23	ENSBMUG00000015556
Domestic yak	MODERN SPECIES	11	GPR155 (ENSBGRG00000014360) #9	ENSBGRG00000014674	ENSBGRG00000014699	CHRNA1 (ENSBGRG00000014839) #11	CHN1 (ENSBGRG00000015101) #12	ATF2 (ENSBGRG00000015648) #13	ATP5MC3 (ENSBGRG00000016024) #14	ENSBGRG00000016132	LNPK (ENSBGRG00000016182) #15	EVX2 (ENSBGRG00000016780) #16	HOXD13 (ENSBGRG00000016836) #17	HOXD12 (ENSBGRG00000016890) #18	HOXD11 (ENSBGRG00000016923) #19	HOXD10 (ENSBGRG00000016979) #20	HOXD9 (ENSBGRG00000017014) #21	HOXD8 (ENSBGRG00000017045) #22	ENSBGRG00000017167 #24	HOXD3 (ENSBGRG00000017255) #23	HOXD1 (ENSBGRG00000017303) #25	MTX2 (ENSBGRG00000017363) #26	ENSBGRG00000000202 ##27	NFE2L2 (ENSBGRG00000000213) #28	AGPS (ENSBGRG00000000237) #29	ENSBGRG00000000256 #32	ENSBGRG00000000264	ENSBGRG00000000270 #32	PDE11A (ENSBGRG00000000288) #33	ENSBGRG00000000317	ENSBGRG00000000319	ENSBGRG00000000328 #34	RBM45 (ENSBGRG00000000341) #35
Bos_b	ANCESTRAL SPECIES	3	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT01030000234916.g.b	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #32	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #32	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36
Cow	MODERN SPECIES	11	WIPF1 (ENSBTAG00000001585)	CHRNA1 (ENSBTAG00000018253) #11	CHN1 (ENSBTAG00000008028) #12	ATF2 (ENSBTAG00000002295) #13	ATP5MC3 (ENSBTAG00000002944) #14	ENSBTAG00000031711	LNPK (ENSBTAG00000018061) #15	ENSBTAG00000050237	ENSBTAG00000002009	EVX2 (ENSBTAG00000049537) #16	HOXD13 (ENSBTAG00000004313) #17	HOXD12 (ENSBTAG00000004314) #18	HOXD11 (ENSBTAG00000033330) #19	HOXD10 (ENSBTAG00000016030) #20	HOXD9 (ENSBTAG00000016033) #21	HOXD8 (ENSBTAG00000049845) #22	HOXD4 (ENSBTAG00000039581) #24	HOXD3 (ENSBTAG00000004835) #23	HOXD1 (ENSBTAG00000015840) #25	MTX2 (ENSBTAG00000006693) #26	HNRNPA3 (ENSBTAG00000021580) ##27	NFE2L2 (ENSBTAG00000019255) #28	AGPS (ENSBTAG00000009897) #29	TTC30B (ENSBTAG00000027696) #32	TTC30A (ENSBTAG00000027694) #32	ENSBTAG00000049860	PDE11A (ENSBTAG00000016396) #33	CYCT (ENSBTAG00000039522) #34	RBM45 (ENSBTAG00000006168) #35	OSBPL6 (ENSBTAG00000014405) #36	PRKRA (ENSBTAG00000001096) #37
Hybrid Bos Indicus	MODERN SPECIES	11	ENSBIXG00005002196	CHRNA1 (ENSBIXG00005028981) #11	CHN1 (ENSBIXG00005001962) #12	ATF2 (ENSBIXG00005001719) #13	ATP5MC3 (ENSBIXG00005029222) #14	ENSBIXG00005029239	LNPK (ENSBIXG00005005282) #15	ENSBIXG00005029245	ENSBIXG00005029246	EVX2 (ENSBIXG00005005288) #16	HOXD13 (ENSBIXG00005001519) #17	HOXD12 (ENSBIXG00005001517) #18	HOXD11 (ENSBIXG00005001515) #19	HOXD10 (ENSBIXG00005005289) #20	HOXD9 (ENSBIXG00005030437) #21	HOXD8 (ENSBIXG00005030431) #22	HOXD3 (ENSBIXG00005030419) #23	HOXD1 (ENSBIXG00005030413) #25	MTX2 (ENSBIXG00005030400) #26	ENSBIXG00005030356	ENSBIXG00005030352	HNRNPA3 (ENSBIXG00005030333) ##27	NFE2L2 (ENSBIXG00005030317) #28	AGPS (ENSBIXG00005030278) #29	ENSBIXG00005030257 #32	ENSBIXG00005030245	ENSBIXG00005030242 #32	PDE11A (ENSBIXG00005030175) #33	ENSBIXG00005030117 #34	RBM45 (ENSBIXG00005030103) #35	OSBPL6 (ENSBIXG00005029906) #36
American bison	MODERN SPECIES	3320	SCRN3 (ENSBBBG00000017011) #8	GPR155 (ENSBBBG00000017134) #9	WIPF1 (ENSBBBG00000017196)	CHRNA1 (ENSBBBG00000017301) #11	CHN1 (ENSBBBG00000004302) #12	ATF2 (ENSBBBG00000017564) #13	ATP5MC3 (ENSBBBG00000017586) #14	ENSBBBG00000017593	LNPK (ENSBBBG00000017627) #15	ENSBBBG00000017634	ENSBBBG00000017638	HOXD13 (ENSBBBG00000017641) #17	HOXD12 (ENSBBBG00000017645) #18	HOXD10 (ENSBBBG00000006962) #20	HOXD9 (ENSBBBG00000017650) #21	HOXD8 (ENSBBBG00000017657) #22	HOXD4 (ENSBBBG00000017669) #24	HOXD3 (ENSBBBG00000017682) #23	HOXD1 (ENSBBBG00000017690) #25	ENSBBBG00000004376	ENSBBBG00000017700	MTX2 (ENSBBBG00000017733) #26	ENSBBBG00000007269 ##27	NFE2L2 (ENSBBBG00000017780) #28	AGPS (ENSBBBG00000017817) #29	ENSBBBG00000007701 #32	ENSBBBG00000017832 #32	ENSBBBG00000017839	PDE11A (ENSBBBG00000017894) #33	ENSBBBG00000017912 #34	RBM45 (ENSBBBG00000004406) #35
Caprinae	ANCESTRAL SPECIES	5	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT01010000228762	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #32	ENSGT00390000010116.fc.b #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020001367	CHRNA1 (ENSOARG00020001273) #11	ENSOARG00020001229	ENSOARG00020001216	CHN1 (ENSOARG00020000831) #12	ATF2 (ENSOARG00020000583) #13	ATP5MC3 (ENSOARG00020000538) #14	LNPK (ENSOARG00020000416) #15	ENSOARG00020000394	EVX2 (ENSOARG00020000381) #16	HOXD13 (ENSOARG00020000373) #17	HOXD12 (ENSOARG00020000357) #18	hoxd11 (ENSOARG00020000346) #19	HOXD10 (ENSOARG00020000330) #20	HOXD9 (ENSOARG00020000321) #21	HOXD8 (ENSOARG00020000297) #22	HOXD4 (ENSOARG00020000275) #24	HOXD3 (ENSOARG00020000257) #23	HOXD1 (ENSOARG00020000237) #25	MTX2 (ENSOARG00020000188) #26	HNRNPA3 (ENSOARG00020000123) ##27	NFE2L2 (ENSOARG00020022726) #28	AGPS (ENSOARG00020022410) #29	ENSOARG00020022373 #32	ENSOARG00020022364 #32	PDE11A (ENSOARG00020022115) #33	ENSOARG00020022078 #34	RBM45 (ENSOARG00020022028) #35	OSBPL6 (ENSOARG00020020986) #36	PRKRA (ENSOARG00020020855) #37	PJVK (ENSOARG00020020753)
Goat	MODERN SPECIES	11	ENSCHIG00000009043	CHRNA1 (ENSCHIG00000018272) #11	CHN1 (ENSCHIG00000017514) #12	ENSCHIG00000012635	ATF2 (ENSCHIG00000011446) #13	ENSCHIG00000018041 #14	LNPK (ENSCHIG00000012313) #15	ENSCHIG00000025787	ENSCHIG00000004992	EVX2 (ENSCHIG00000026644) #16	HOXD13 (ENSCHIG00000009994) #17	HOXD12 (ENSCHIG00000014734) #18	HOXD11 (ENSCHIG00000026087) #19	HOXD10 (ENSCHIG00000011771) #20	HOXD9 (ENSCHIG00000023245) #21	HOXD8 (ENSCHIG00000013371) #22	HOXD4 (ENSCHIG00000019702) #24	HOXD3 (ENSCHIG00000011624) #23	HOXD1 (ENSCHIG00000017515) #25	MTX2 (ENSCHIG00000008892) #26	ENSCHIG00000015430 ##27	NFE2L2 (ENSCHIG00000026055) #28	AGPS (ENSCHIG00000015256) #29	ENSCHIG00000011750 #32	ENSCHIG00000011716 #32	PDE11A (ENSCHIG00000016852) #33	ENSCHIG00000026156 #34	RBM45 (ENSCHIG00000010687) #35	ENSCHIG00000017164	OSBPL6 (ENSCHIG00000008898) #36	PRKRA (ENSCHIG00000015333) #37
Siberian musk deer	MODERN SPECIES	342					ENSMMSG00000008116	ENSMMSG00000008102 ##12	ATF2 (ENSMMSG00000007713) #13	ENSMMSG00000007642 #14	LNPK (ENSMMSG00000007582) #15	EVX2 (ENSMMSG00000007555) #16	HOXD13 (ENSMMSG00000007541) #17	HOXD12 (ENSMMSG00000007530) #18	HOXD11 (ENSMMSG00000007513) #19	HOXD10 (ENSMMSG00000007495) #20	HOXD9 (ENSMMSG00000007480) #21	HOXD8 (ENSMMSG00000007407) #22	HOXD4 (ENSMMSG00000007365) #24	HOXD3 (ENSMMSG00000007343) #23	HOXD1 (ENSMMSG00000007322) #25	MTX2 (ENSMMSG00000007226) #26	ENSMMSG00000007068 ##27	NFE2L2 (ENSMMSG00000006992) #28	ENSMMSG00000006963	AGPS (ENSMMSG00000006894) #29	ENSMMSG00000006854 #32	ENSMMSG00000006819 #32	PDE11A (ENSMMSG00000006654) #33	ENSMMSG00000006624 #34	RBM45 (ENSMMSG00000006596) #35	OSBPL6 (ENSMMSG00000006219) #36
Yarkand deer	MODERN SPECIES	26	GPR155 (ENSCHYG00000018083) #9	ENSCHYG00000017877	CHRNA1 (ENSCHYG00000017619) #11	ENSCHYG00000017575	CHN1 (ENSCHYG00000017015) #12	ATF2 (ENSCHYG00000016575) #13	ATP5MC3 (ENSCHYG00000016464) #14	ENSCHYG00000016417	ENSCHYG00000016391	LNPK (ENSCHYG00000016125) #15	HOXD13 (ENSCHYG00000015985) #17	HOXD12 (ENSCHYG00000015954) #18	ENSCHYG00000015846	HOXD10 (ENSCHYG00000015831) #20	HOXD9 (ENSCHYG00000015808) #21	HOXD8 (ENSCHYG00000015741) #22	HOXD4 (ENSCHYG00000015683) #24	HOXD3 (ENSCHYG00000015650) #23	HOXD1 (ENSCHYG00000015562) #25	MTX2 (ENSCHYG00000015392) #26	ENSCHYG00000015305	ENSCHYG00000015038 ##27	NFE2L2 (ENSCHYG00000024719) #28	AGPS (ENSCHYG00000024578) #29	ENSCHYG00000024559 #32	ENSCHYG00000024550 #32	PDE11A (ENSCHYG00000024466) #33	ENSCHYG00000024445 #34	ENSCHYG00000024431	RBM45 (ENSCHYG00000024364) #35	OSBPL6 (ENSCHYG00000023926) #36
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Carnivora	ANCESTRAL SPECIES	17	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000147479.a.b	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Felidae	ANCESTRAL SPECIES	15	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000147479.a.b	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.vb #32	ENSGT00390000010116.wb #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Panthera	ANCESTRAL SPECIES	9	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000147479.a.b	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.vb #32	ENSGT00390000010116.wb #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Tiger	MODERN SPECIES	43	SP3 (ENSPTIG00000014294)	ENSPTIG00000011872	ENSPTIG00000009967	CIR1 (ENSPTIG00000008708) #7	SCRN3 (ENSPTIG00000003437) #8	GPR155 (ENSPTIG00000018965) #9	WIPF1 (ENSPTIG00000016801)	CHRNA1 (ENSPTIG00000012090) #11	CHN1 (ENSPTIG00000006887) #12	ATF2 (ENSPTIG00000017517) #13	ATP5MC3 (ENSPTIG00000016881) #14	LNPK (ENSPTIG00000016532) #15	HOXD13 (ENSPTIG00000016212) #17	HOXD10 (ENSPTIG00000015771) #20	ENSPTIG00000006835 #21	ENSPTIG00000015581 #22	HOXD4 (ENSPTIG00000015199) #24	ENSPTIG00000013485	MTX2 (ENSPTIG00000011503) #26	HNRNPA3 (ENSPTIG00000008598) ##27	NFE2L2 (ENSPTIG00000007874) #28
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000147479.a.b	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.vb #32	ENSGT00390000010116.wb #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
lion	MODERN SPECIES	8	GPR155 (ENSPLOG00000022420) #9	ENSPLOG00000022404	ENSPLOG00000022399	WIPF1 (ENSPLOG00000022385)	CHRNA1 (ENSPLOG00000022353) #11	CHN1 (ENSPLOG00000022311) #12	ATF2 (ENSPLOG00000022276) #13	ATP5MC3 (ENSPLOG00000022249) #14	LNPK (ENSPLOG00000022229) #15	EVX2 (ENSPLOG00000022219) #16	HOXD13 (ENSPLOG00000022213) #17	HOXD12 (ENSPLOG00000022207) #18	HOXD11 (ENSPLOG00000022202) #19	HOXD10 (ENSPLOG00000022198) #20	HOXD9 (ENSPLOG00000022195) #21	HOXD8 (ENSPLOG00000022192) #22	HOXD4 (ENSPLOG00000022180) #24	HOXD3 (ENSPLOG00000022176) #23	HOXD1 (ENSPLOG00000022171) #25	MTX2 (ENSPLOG00000022148) #26	ENSPLOG00000022134 ##27	NFE2L2 (ENSPLOG00000022123) #28	AGPS (ENSPLOG00000022055) #29	ENSPLOG00000022046 #32	ENSPLOG00000022045 #32	PDE11A (ENSPLOG00000022012) #33	RBM45 (ENSPLOG00000021986) #35	OSBPL6 (ENSPLOG00000021601) #36	PRKRA (ENSPLOG00000021458) #37	PJVK (ENSPLOG00000021374)	FKBP7 (ENSPLOG00000021347)
leopard	MODERN SPECIES	1	SCRN3 (ENSPPRG00000003477) #8	GPR155 (ENSPPRG00000003324) #9	ENSPPRG00000002818	WIPF1 (ENSPPRG00000002779)	CHRNA1 (ENSPPRG00000002357) #11	CHN1 (ENSPPRG00000001854) #12	ATF2 (ENSPPRG00000001271) #13	ATP5MC3 (ENSPPRG00000000490) #14	LNPK (ENSPPRG00000000436) #15	EVX2 (ENSPPRG00000000389) #16	HOXD13 (ENSPPRG00000000349) #17	HOXD12 (ENSPPRG00000000300) #18	HOXD11 (ENSPPRG00000000168) #19	HOXD10 (ENSPPRG00000000139) #20	HOXD9 (ENSPPRG00000000084) #21	HOXD8 (ENSPPRG00000022672) #22	HOXD4 (ENSPPRG00000022845) #24	HOXD3 (ENSPPRG00000022847) #23	HOXD1 (ENSPPRG00000023009) #25	MTX2 (ENSPPRG00000022475) #26	ENSPPRG00000022322 ##27	NFE2L2 (ENSPPRG00000020872) #28	AGPS (ENSPPRG00000020328) #29	ENSPPRG00000021116 #32	ENSPPRG00000021101 #32	PDE11A (ENSPPRG00000019135) #33	ENSPPRG00000017216 #34	RBM45 (ENSPPRG00000017073) #35	OSBPL6 (ENSPPRG00000015447) #36	ENSPPRG00000011982 #37	PJVK (ENSPPRG00000011834)
Cat	MODERN SPECIES	239	SCRN3 (ENSFCAG00000022042) #8	GPR155 (ENSFCAG00000000439) #9	ENSFCAG00000034843	WIPF1 (ENSFCAG00000014400)	CHRNA1 (ENSFCAG00000014103) #11	CHN1 (ENSFCAG00000039893) #12	ATF2 (ENSFCAG00000027595) #13	ATP5MC3 (ENSFCAG00000012719) #14	LNPK (ENSFCAG00000033171) #15	EVX2 (ENSFCAG00000023892) #16	HOXD13 (ENSFCAG00000030694) #17	HOXD12 (ENSFCAG00000044671) #18	HOXD11 (ENSFCAG00000030594) #19	HOXD10 (ENSFCAG00000006264) #20	HOXD9 (ENSFCAG00000035038) #21	HOXD8 (ENSFCAG00000034788) #22	HOXD4 (ENSFCAG00000045772) #24	HOXD3 (ENSFCAG00000022371) #23	HOXD1 (ENSFCAG00000042171) #25	MTX2 (ENSFCAG00000030099) #26	HNRNPA3 (ENSFCAG00000012146) ##27	NFE2L2 (ENSFCAG00000012147) #28	AGPS (ENSFCAG00000022316) #29	ENSFCAG00000048732 #32	ENSFCAG00000049217 #32	PDE11A (ENSFCAG00000022207) #33	RBM45 (ENSFCAG00000018793) #35	OSBPL6 (ENSFCAG00000012535) #36	PRKRA (ENSFCAG00000031042) #37	PJVK (ENSFCAG00000018124)	FKBP7 (ENSFCAG00000012540)
Caniformia	ANCESTRAL SPECIES	14	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000147479.a.b	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000147479.a.b	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Ursidae	ANCESTRAL SPECIES	7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000147479.a.b	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.m.b #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.b ##27	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Ursus	ANCESTRAL SPECIES	4	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000147479.a.b	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.m.b #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
American black bear	MODERN SPECIES	3042										EVX2 (ENSUAMG00000025680) #16	HOXD13 (ENSUAMG00000025683) #17	HOXD12 (ENSUAMG00000025684) #18	HOXD11 (ENSUAMG00000025686) #19	HOXD10 (ENSUAMG00000025688) #20	HOXD9 (ENSUAMG00000025690) #21	HOXD8 (ENSUAMG00000025693) #22	HOXD4 (ENSUAMG00000025697) #24	HOXD3 (ENSUAMG00000025698) #23	HOXD1 (ENSUAMG00000025700) #25
Polar bear	MODERN SPECIES	142	SP3 (ENSUMAG00000015395)	OLA1 (ENSUMAG00000015410)	ENSUMAG00000015413	CIR1 (ENSUMAG00000015415) #7	SCRN3 (ENSUMAG00000015422) #8	GPR155 (ENSUMAG00000015425) #9	ENSUMAG00000015461	ENSUMAG00000015473 #10	CHRNA1 (ENSUMAG00000015480) #11	CHN1 (ENSUMAG00000015511) #12	ATF2 (ENSUMAG00000015564) #13	ATP5MC3 (ENSUMAG00000015579) #14	LNPK (ENSUMAG00000015613) #15	ENSUMAG00000015649 #19	HOXD10 (ENSUMAG00000015650) #20	ENSUMAG00000015653 #22	HOXD4 (ENSUMAG00000015658) #24	MTX2 (ENSUMAG00000015662) #26	ENSUMAG00000015686 ##27	NFE2L2 (ENSUMAG00000015689) #28	AGPS (ENSUMAG00000015781) #29	ENSUMAG00000016390 #32	PDE11A (ENSUMAG00000016414) #33	RBM45 (ENSUMAG00000016503) #35	OSBPL6 (ENSUMAG00000016519) #36	PRKRA (ENSUMAG00000016566) #37	PJVK (ENSUMAG00000016572)	FKBP7 (ENSUMAG00000016577)	PLEKHA3 (ENSUMAG00000016580)	ENSUMAG00000016583	ENSUMAG00000016602
Giant Panda	MODERN SPECIES	11	SCRN3 (ENSAMEG00000012230) #8	GPR155 (ENSAMEG00000012251) #9	ENSAMEG00000027164	WIPF1 (ENSAMEG00000012269)	CHRNA1 (ENSAMEG00000012277) #11	CHN1 (ENSAMEG00000012304) #12	ATF2 (ENSAMEG00000012333) #13	ATP5MC3 (ENSAMEG00000012367) #14	LNPK (ENSAMEG00000001869) #15	EVX2 (ENSAMEG00000001868) #16	HOXD13 (ENSAMEG00000001865) #17	HOXD12 (ENSAMEG00000023609) #18	ENSAMEG00000025193 #19	HOXD10 (ENSAMEG00000001849) #20	HOXD9 (ENSAMEG00000029987) #21	HOXD8 (ENSAMEG00000023565) #22	HOXD4 (ENSAMEG00000025663) #24	HOXD3 (ENSAMEG00000026957) #23	HOXD1 (ENSAMEG00000028345) #25	MTX2 (ENSAMEG00000001799) #26	ENSAMEG00000019906	HNRNPA3 (ENSAMEG00000011920) ##27	NFE2L2 (ENSAMEG00000011937) #28	AGPS (ENSAMEG00000011950) #29	PDE11A (ENSAMEG00000000902) #33	ENSAMEG00000023664	RBM45 (ENSAMEG00000000896) #35	OSBPL6 (ENSAMEG00000000825) #36	PRKRA (ENSAMEG00000000803) #37	PJVK (ENSAMEG00000000801)	FKBP7 (ENSAMEG00000027885)
Mustelinae	ANCESTRAL SPECIES	21	ENSGT00570000080031	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
American mink	MODERN SPECIES	222									LNPK (ENSNVIG00000007208) #15	EVX2 (ENSNVIG00000007198) #16	HOXD13 (ENSNVIG00000007186) #17	HOXD12 (ENSNVIG00000007175) #18	ENSNVIG00000007170 #19	HOXD10 (ENSNVIG00000007162) #20	HOXD9 (ENSNVIG00000007158) #21	ENSNVIG00000007149 #22	HOXD4 (ENSNVIG00000007138) #24	HOXD3 (ENSNVIG00000007128) #23	HOXD1 (ENSNVIG00000007113) #25	MTX2 (ENSNVIG00000007075) #26	HNRNPA3 (ENSNVIG00000007022) ##27	NFE2L2 (ENSNVIG00000006995) #28	AGPS (ENSNVIG00000006950) #29	ENSNVIG00000006929	PDE11A (ENSNVIG00000006854) #33	ENSNVIG00000006839 #34	RBM45 (ENSNVIG00000006823) #35	OSBPL6 (ENSNVIG00000006388) #36	PRKRA (ENSNVIG00000006320) #37	PJVK (ENSNVIG00000006274)	FKBP7 (ENSNVIG00000006271)
Ferret	MODERN SPECIES	359	ENSMPUG00000013943 #7	SCRN3 (ENSMPUG00000013961) #8	GPR155 (ENSMPUG00000013963) #9	ENSMPUG00000013967	CHRNA1 (ENSMPUG00000013974) #11	CHN1 (ENSMPUG00000013977) #12	ATF2 (ENSMPUG00000013983) #13	ATP5MC3 (ENSMPUG00000013986) #14	LNPK (ENSMPUG00000014007) #15	EVX2 (ENSMPUG00000014012) #16	HOXD13 (ENSMPUG00000014022) #17	HOXD12 (ENSMPUG00000014025) #18	HOXD11 (ENSMPUG00000014029) #19	HOXD10 (ENSMPUG00000014049) #20	HOXD9 (ENSMPUG00000014053) #21	ENSMPUG00000014060 #22	ENSMPUG00000014067	HOXD4 (ENSMPUG00000014070) #24	HOXD3 (ENSMPUG00000014072) #23	ENSMPUG00000014080	HOXD1 (ENSMPUG00000014084) #25	ENSMPUG00000014088	MTX2 (ENSMPUG00000014094) #26	ENSMPUG00000014101	ENSMPUG00000014103 ##27	ENSMPUG00000014168 #28	ENSMPUG00000014172	AGPS (ENSMPUG00000014173) #29
Canidae	ANCESTRAL SPECIES	45	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000147479.a.b.b	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a.g.b #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.i #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.tb #32	ENSGT00390000010116.ub #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Canis_lupus	ANCESTRAL SPECIES	39	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000147479.a.b.b	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a.g.b #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.i #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.tb #32	ENSGT00390000010116.ub #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Dingo	MODERN SPECIES	339	WIPF1 (ENSCAFG00020006074)	ENSCAFG00020006077	CHRNA1 (ENSCAFG00020006081) #11	ENSCAFG00020006110 #12	ENSCAFG00020006118 #12	ATF2 (ENSCAFG00020006131) #13	ENSCAFG00020006151 #14	ENSCAFG00020006176	LNPK (ENSCAFG00020006192) #15	EVX2 (ENSCAFG00020006206) #16	HOXD13 (ENSCAFG00020006212) #17	HOXD12 (ENSCAFG00020006216) #18	HOXD9 (ENSCAFG00020006227) #21	HOXD11 (ENSCAFG00020006229) #19	HOXD10 (ENSCAFG00020006239) #20	HOXD8 (ENSCAFG00020006244) #22	HOXD4 (ENSCAFG00020006256) #24	HOXD3 (ENSCAFG00020006263) #23	HOXD1 (ENSCAFG00020006270) #25	MTX2 (ENSCAFG00020006273) #26	ENSCAFG00020006299 ##27	NFE2L2 (ENSCAFG00020006313) #28	AGPS (ENSCAFG00020006351) #29	ENSCAFG00020006961 #32	ENSCAFG00020006963 #32	PDE11A (ENSCAFG00020006966) #33	RBM45 (ENSCAFG00020007013) #35	OSBPL6 (ENSCAFG00020007025) #36	ENSCAFG00020007071 #37	PJVK (ENSCAFG00020007088)	FKBP7 (ENSCAFG00020007095)
Red fox	MODERN SPECIES	15	SCRN3 (ENSVVUG00000012946) #8	GPR155 (ENSVVUG00000012912) #9	ENSVVUG00000012900	WIPF1 (ENSVVUG00000012885)	CHRNA1 (ENSVVUG00000012830) #11	CHN1 (ENSVVUG00000012819) #12	ATF2 (ENSVVUG00000012774) #13	ATP5MC3 (ENSVVUG00000012759) #14	LNPK (ENSVVUG00000012737) #15	EVX2 (ENSVVUG00000012735) #16	HOXD13 (ENSVVUG00000012734) #17	HOXD12 (ENSVVUG00000012731) #18	ENSVVUG00000012726 #19	HOXD10 (ENSVVUG00000012722) #20	ENSVVUG00000012717 #21	HOXD8 (ENSVVUG00000012714) #22	HOXD3 (ENSVVUG00000012700) #23	ENSVVUG00000012694	ENSVVUG00000012682 #26	ENSVVUG00000012651 #27	NFE2L2 (ENSVVUG00000012641) #28	ENSVVUG00000012637	ENSVVUG00000012634 #32	AGPS (ENSVVUG00000010164) #29	ENSVVUG00000010109 #32	PDE11A (ENSVVUG00000010094) #33	RBM45 (ENSVVUG00000010078) #35	OSBPL6 (ENSVVUG00000010039) #36	PRKRA (ENSVVUG00000010032) #37	PJVK (ENSVVUG00000010029)	FKBP7 (ENSVVUG00000010027)
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Greater horseshoe bat	MODERN SPECIES	26	CIR1 (ENSRFEG00010000863) #7	SCRN3 (ENSRFEG00010000835) #8	GPR155 (ENSRFEG00010000805) #9	WIPF1 (ENSRFEG00010000762)	CHRNA1 (ENSRFEG00010000686) #11	CHN1 (ENSRFEG00010000595) #12	ATF2 (ENSRFEG00010000479) #13	ENSRFEG00010000353 #14	LNPK (ENSRFEG00010000270) #15	EVX2 (ENSRFEG00010000230) #16	HOXD13 (ENSRFEG00010022173) #17	HOXD12 (ENSRFEG00010022172) #18	HOXD11 (ENSRFEG00010022171) #19	HOXD10 (ENSRFEG00010022170) #20	HOXD9 (ENSRFEG00010022169) #21	HOXD8 (ENSRFEG00010022168) #22	HOXD4 (ENSRFEG00010022166) #24	HOXD3 (ENSRFEG00010022165) #23	HOXD1 (ENSRFEG00010022164) #25	MTX2 (ENSRFEG00010022163) #26	ENSRFEG00010022161 ##27	NFE2L2 (ENSRFEG00010022160) #28	ENSRFEG00010022158 #29	ENSRFEG00010022157 #32	ENSRFEG00010022156 #32	PDE11A (ENSRFEG00010022154) #33	ENSRFEG00010022153 #34	RBM45 (ENSRFEG00010022152) #35	OSBPL6 (ENSRFEG00010022151) #36	PRKRA (ENSRFEG00010022150) #37	DFNB59 (ENSRFEG00010022149)
Microbat	MODERN SPECIES	942	CIR1 (ENSMLUG00000013807) #7	SCRN3 (ENSMLUG00000013823) #8	GPR155 (ENSMLUG00000013828) #9	WIPF1 (ENSMLUG00000022385)	CHRNA1 (ENSMLUG00000015698) #11	CHN1 (ENSMLUG00000015709) #12	ATF2 (ENSMLUG00000015718) #13	ENSMLUG00000012822 #14	LNPK (ENSMLUG00000006972) #15	ENSMLUG00000022478	EVX2 (ENSMLUG00000006989) #16	HOXD13 (ENSMLUG00000006997) #17	HOXD12 (ENSMLUG00000007009) #18	HOXD11 (ENSMLUG00000007030) #19	HOXD10 (ENSMLUG00000007048) #20	HOXD8 (ENSMLUG00000028864) #22	HOXD4 (ENSMLUG00000012508) #24	HOXD3 (ENSMLUG00000012510) #23	ENSMLUG00000029447 #25	MTX2 (ENSMLUG00000015966) #26	ENSMLUG00000003906 ##27	NFE2L2 (ENSMLUG00000003909) #28	ENSMLUG00000025480	AGPS (ENSMLUG00000005113) #29	ENSMLUG00000005126 #32	ENSMLUG00000005133 #32	ENSMLUG00000028755	PDE11A (ENSMLUG00000005135) #33	RBM45 (ENSMLUG00000005782) #35	OSBPL6 (ENSMLUG00000005787) #36	ENSMLUG00000022423
Megabat	MODERN SPECIES	1085										LNPK (ENSPVAG00000017411) #15	EVX2 (ENSPVAG00000017414) #16	HOXD13 (ENSPVAG00000017415) #17	HOXD12 (ENSPVAG00000017416) #18	HOXD11 (ENSPVAG00000017417) #19	HOXD10 (ENSPVAG00000017418) #20	HOXD8 (ENSPVAG00000017420) #22	HOXD3 (ENSPVAG00000017421) #23	HOXD1 (ENSPVAG00000017425) #25	MTX2 (ENSPVAG00000017426) #26
Equus	ANCESTRAL SPECIES	18	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00390000005569.x.a.a.b	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Donkey	MODERN SPECIES	24	SCRN3 (ENSEASG00005022597) #8	GPR155 (ENSEASG00005022591) #9	WIPF1 (ENSEASG00005022583)	CHRNA1 (ENSEASG00005022581) #11	CHN1 (ENSEASG00005022579) #12	ATF2 (ENSEASG00005022575) #13	ATP5MC3 (ENSEASG00005022573) #14	LNPK (ENSEASG00005022567) #15	ENSEASG00005022564	EVX2 (ENSEASG00005022562) #16	HOXD13 (ENSEASG00005029242) #17	HOXD12 (ENSEASG00005022555) #18	HOXD11 (ENSEASG00005030904) #19	HOXD10 (ENSEASG00005022552) #20	HOXD9 (ENSEASG00005023994) #21	HOXD8 (ENSEASG00005033905) #22	HOXD4 (ENSEASG00005024806) #24	HOXD3 (ENSEASG00005022544) #23	HOXD1 (ENSEASG00005030887) #25	MTX2 (ENSEASG00005022537) #26	HNRNPA3 (ENSEASG00005022530) ##27	NFE2L2 (ENSEASG00005028739) #28	ENSEASG00005026944 #32	AGPS (ENSEASG00005022514) #29	ENSEASG00005028303 #32	PDE11A (ENSEASG00005022489) #33	ENSEASG00005026887 #34	RBM45 (ENSEASG00005022475) #35	OSBPL6 (ENSEASG00005022455) #36	PRKRA (ENSEASG00005022436) #37	PJVK (ENSEASG00005022430)
Horse	MODERN SPECIES	9	CIR1 (ENSECAG00000006773) #7	SCRN3 (ENSECAG00000018530) #8	GPR155 (ENSECAG00000008471) #9	WIPF1 (ENSECAG00000015984)	CHRNA1 (ENSECAG00000019649) #11	CHN1 (ENSECAG00000008277) #12	ATF2 (ENSECAG00000018723) #13	ATP5MC3 (ENSECAG00000008514) #14	LNPK (ENSECAG00000008534) #15	ENSECAG00000043913	EVX2 (ENSECAG00000019796) #16	HOXD13 (ENSECAG00000020388) #17	HOXD11 (ENSECAG00000003045) #19	HOXD10 (ENSECAG00000020599) #20	HOXD9 (ENSECAG00000021845) #21	HOXD8 (ENSECAG00000021980) #22	HOXD4 (ENSECAG00000038429) #24	HOXD3 (ENSECAG00000022129) #23	HOXD1 (ENSECAG00000035437) #25	MTX2 (ENSECAG00000022464) #26	HNRNPA3 (ENSECAG00000059976) ##27	NFE2L2 (ENSECAG00000005675) #28	AGPS (ENSECAG00000008695) #29	ENSECAG00000051775	ENSECAG00000000927 #32	PDE11A (ENSECAG00000004445) #33	ENSECAG00000057854	CYCT (ENSECAG00000016170) #34	RBM45 (ENSECAG00000017129) #35	OSBPL6 (ENSECAG00000020078) #36	PRKRA (ENSECAG00000024263) #37
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.e #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Tenrec	MODERN SPECIES	2551											HOXD13 (ENSETEG00000011065) #17	ENSETEG00000011066 #19	HOXD10 (ENSETEG00000011067) #20	HOXD9 (ENSETEG00000011069) #21	ENSETEG00000011072	HOXD8 (ENSETEG00000011076) #22
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00940000162304	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.e #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.o #32	ENSGT00390000010116.p #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Hyrax	MODERN SPECIES	9547													EVX2 (ENSPCAG00000015601) #16	HOXD12 (ENSPCAG00000015624) #18	HOXD10 (ENSPCAG00000015648) #20	ENSPCAG00000015753 #22	HOXD4 (ENSPCAG00000015781) #24	HOXD3 (ENSPCAG00000015801) #23	HOXD1 (ENSPCAG00000015869) #25
Elephant	MODERN SPECIES	301	SP9 (ENSLAFG00000026573)	CIR1 (ENSLAFG00000010236) #7	SCRN3 (ENSLAFG00000010241) #8	GPR155 (ENSLAFG00000010245) #9	WIPF1 (ENSLAFG00000028992)	CHRNA1 (ENSLAFG00000011067) #11	CHN1 (ENSLAFG00000011074) #12	ATF2 (ENSLAFG00000006463) #13	ENSLAFG00000010768 #14	LNPK (ENSLAFG00000004502) #15	EVX2 (ENSLAFG00000013264) #16	HOXD13 (ENSLAFG00000027629) #17	HOXD12 (ENSLAFG00000017497) #18	HOXD10 (ENSLAFG00000013262) #20	HOXD9 (ENSLAFG00000011494) #21	HOXD8 (ENSLAFG00000004364) #22	HOXD4 (ENSLAFG00000005480) #24	HOXD3 (ENSLAFG00000005477) #23	MTX2 (ENSLAFG00000013982) #26	ENSLAFG00000027712	NFE2L2 (ENSLAFG00000016263) #28	AGPS (ENSLAFG00000014990) #29	ENSLAFG00000014996 #32	ENSLAFG00000005704 #32	PDE11A (ENSLAFG00000005234) #33	ENSLAFG00000027524 #34	RBM45 (ENSLAFG00000007464) #35	OSBPL6 (ENSLAFG00000011141) #36	PRKRA (ENSLAFG00000026940) #37	PJVK (ENSLAFG00000016082)	FKBP7 (ENSLAFG00000016244)
Xenarthra	ANCESTRAL SPECIES	11	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000164264	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	846															ENSDNOG00000031905	ENSDNOG00000008112 #22	PRRX1 (ENSDNOG00000046319)	GORAB (ENSDNOG00000030666)	CCDC43 (ENSDNOG00000039513)	MEIOC (ENSDNOG00000012465)	GPATCH8 (ENSDNOG00000005102)	ITGA2B (ENSDNOG00000008105)	FAM171A2 (ENSDNOG00000038132)	GRN (ENSDNOG00000008510)	ENSDNOG00000008556	RUNDC3A (ENSDNOG00000049702)	SLC4A1 (ENSDNOG00000004568)	UBTF (ENSDNOG00000000240)	ATXN7L3 (ENSDNOG00000003379)	TMUB2 (ENSDNOG00000049261)	ASB16 (ENSDNOG00000015509)
Armadillo	MODERN SPECIES	3580	SCRN3 (ENSDNOG00000035179) #8	GPR155 (ENSDNOG00000007590) #9	ENSDNOG00000041872	ENSDNOG00000033898	CHRNA1 (ENSDNOG00000016153) #11	CHN1 (ENSDNOG00000037568) #12	ATF2 (ENSDNOG00000015229) #13	ENSDNOG00000044678 #14	LNPK (ENSDNOG00000039308) #15	ENSDNOG00000045361	EVX2 (ENSDNOG00000019797) #16	HOXD13 (ENSDNOG00000019799) #17	HOXD12 (ENSDNOG00000047700) #18	HOXD11 (ENSDNOG00000044260) #19	HOXD10 (ENSDNOG00000034389) #20	HOXD8 (ENSDNOG00000036145) #22	HOXD4 (ENSDNOG00000019805) #24	HOXD3 (ENSDNOG00000035593) #23	HOXD1 (ENSDNOG00000019807) #25	MTX2 (ENSDNOG00000034659) #26	HNRNPA3 (ENSDNOG00000019022) ##27	NFE2L2 (ENSDNOG00000019020) #28	AGPS (ENSDNOG00000032919) #29	ENSDNOG00000044838 #32	ENSDNOG00000032224 #32	ENSDNOG00000016006	RBM45 (ENSDNOG00000001973) #35	OSBPL6 (ENSDNOG00000016352) #36	PRKRA (ENSDNOG00000019701) #37	PJVK (ENSDNOG00000019700)	FKBP7 (ENSDNOG00000035521)
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000173501	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C.k #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Opossum	MODERN SPECIES	3	SCRN3 (ENSMODG00000009337) #8	GPR155 (ENSMODG00000009362) #9	WIPF1 (ENSMODG00000009366)	CHRNA1 (ENSMODG00000009414) #11	CHN1 (ENSMODG00000009464) #12	ATF2 (ENSMODG00000009514) #13	ENSMODG00000009520 #14	ENSMODG00000047401	ENSMODG00000009536 #15	EVX2 (ENSMODG00000009546) #16	HOXD13 (ENSMODG00000009550) #17	HOXD12 (ENSMODG00000024741) #18	HOXD11 (ENSMODG00000009565) #19	HOXD10 (ENSMODG00000009577) #20	HOXD9 (ENSMODG00000009591) #21	HOXD8 (ENSMODG00000009593) #22	HOXD4 (ENSMODG00000009598) #24	HOXD3 (ENSMODG00000046524) #23	HOXD1 (ENSMODG00000009604) #25	MTX2 (ENSMODG00000009617) #26	NFE2L2 (ENSMODG00000009624) #28	AGPS (ENSMODG00000009686) #29	ENSMODG00000048757	ENSMODG00000048807 #32	PDE11A (ENSMODG00000036430) #33	ENSMODG00000037708	ENSMODG00000029563 #34	RBM45 (ENSMODG00000009742) #35	OSBPL6 (ENSMODG00000009796) #36	PRKRA (ENSMODG00000009823) #37	PJVK (ENSMODG00000009854)
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000173501	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C.k #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Diprotodontia	ANCESTRAL SPECIES	11	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000173501	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C.k #26	ENSGT00940000153147.o.a #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Diprotodontia_a	ANCESTRAL SPECIES	9	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.a #14	ENSGT00390000001859 #15	ENSGT00940000173501	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C.k.a #26	ENSGT00940000153147.o.a #27	ENSGT00950000182892.a.a.b #28	ENSGT00390000006051.d.b.a.a	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Common wonbat	MODERN SPECIES	1018	CIR1 (ENSVURG00010019374) #7	SCRN3 (ENSVURG00010019366) #8	GPR155 (ENSVURG00010019311) #9	WIPF1 (ENSVURG00010019295)	CHRNA1 (ENSVURG00010019276) #11	CHN1 (ENSVURG00010019258) #12	ATF2 (ENSVURG00010019225) #13	ENSVURG00010019213 #14	LNPK (ENSVURG00010019192) #15	EVX2 (ENSVURG00010019179) #16	HOXD13 (ENSVURG00010019176) #17	HOXD12 (ENSVURG00010019173) #18	ENSVURG00010019168 #19	HOXD10 (ENSVURG00010019165) #20	HOXD9 (ENSVURG00010019159) #21	HOXD8 (ENSVURG00010019156) #22	HOXD4 (ENSVURG00010019150) #24	HOXD3 (ENSVURG00010019148) #23	HOXD1 (ENSVURG00010019147) #25	ENSVURG00010019141 #26	ENSVURG00010019134	ENSVURG00010019105 #27	NFE2L2 (ENSVURG00010019096) #28	ENSVURG00010019089	AGPS (ENSVURG00010018947) #29	ENSVURG00010018908 #32	PDE11A (ENSVURG00010018883) #33	ENSVURG00010018867 #34	RBM45 (ENSVURG00010018862) #35	OSBPL6 (ENSVURG00010018808) #36	PRKRA (ENSVURG00010018771) #37
koala	MODERN SPECIES	40	GPR155 (ENSPCIG00000026300) #9	WIPF1 (ENSPCIG00000026292)	ENSPCIG00000034435	CHRNA1 (ENSPCIG00000026290) #11	CHN1 (ENSPCIG00000026288) #12	ATF2 (ENSPCIG00000026284) #13	ENSPCIG00000026281 #14	LNPK (ENSPCIG00000029137) #15	ENSPCIG00000034586	EVX2 (ENSPCIG00000029139) #16	HOXD13 (ENSPCIG00000029140) #17	HOXD12 (ENSPCIG00000029141) #18	ENSPCIG00000034132 #19	HOXD10 (ENSPCIG00000029143) #20	HOXD9 (ENSPCIG00000033878) #21	HOXD8 (ENSPCIG00000029145) #22	HOXD3 (ENSPCIG00000026502) #23	HOXD4 (ENSPCIG00000026503) #24	HOXD1 (ENSPCIG00000026501) #25	MTX2 (ENSPCIG00000006277) #26	ENSPCIG00000034180	ENSPCIG00000035345	ENSPCIG00000025443 #27	NFE2L2 (ENSPCIG00000025438) #28	ENSPCIG00000025432	AGPS (ENSPCIG00000025418) #29	ENSPCIG00000025413 #32	PDE11A (ENSPCIG00000025405) #33	RBM45 (ENSPCIG00000025402) #35	ENSPCIG00000025391	OSBPL6 (ENSPCIG00000025378) #36
Tasmanian devil	MODERN SPECIES	2	CIR1 (ENSSHAG00000015674) #7	SCRN3 (ENSSHAG00000015809) #8	GPR155 (ENSSHAG00000001210) #9	WIPF1 (ENSSHAG00000005304)	CHRNA1 (ENSSHAG00000007749) #11	CHN1 (ENSSHAG00000008483) #12	ATF2 (ENSSHAG00000029247) #13	ATP5MC3 (ENSSHAG00000028674) #14	LNPK (ENSSHAG00000031133) #15	EVX2 (ENSSHAG00000015873) #16	HOXD13 (ENSSHAG00000015915) #17	HOXD12 (ENSSHAG00000021387) #18	HOXD11 (ENSSHAG00000021515) #19	HOXD10 (ENSSHAG00000016004) #20	HOXD9 (ENSSHAG00000021426) #21	HOXD8 (ENSSHAG00000026470) #22	HOXD3 (ENSSHAG00000024332) #23	HOXD4 (ENSSHAG00000024760) #24	HOXD1 (ENSSHAG00000016187) #25	MTX2 (ENSSHAG00000016381) #26	HNRNPA3 (ENSSHAG00000022116) #27	NFE2L2 (ENSSHAG00000018277) #28	ENSSHAG00000022926 #32	AGPS (ENSSHAG00000018507) #29	PDE11A (ENSSHAG00000030320) #33	ENSSHAG00000005285 #34	RBM45 (ENSSHAG00000005667) #35	OSBPL6 (ENSSHAG00000007874) #36	PRKRA (ENSSHAG00000028806) #37	PJVK (ENSSHAG00000010083)	FKBP7 (ENSSHAG00000010178)
Platypus	MODERN SPECIES	20	CIR1 (ENSOANG00000037110) #7	SCRN3 (ENSOANG00000008604) #8	GPR155 (ENSOANG00000008605) #9	ENSOANG00000008606	CHRNA1 (ENSOANG00000008607) #11	CHN1 (ENSOANG00000008609) #12	ATF2 (ENSOANG00000008612) #13	ATP5MC3 (ENSOANG00000046084) #14	LNPK (ENSOANG00000008614) #15	EVX2 (ENSOANG00000042825) #16	HOXD13 (ENSOANG00000043790) #17	HOXD12 (ENSOANG00000004743) #18	HOXD11 (ENSOANG00000048827) #19	HOXD10 (ENSOANG00000037187) #20	HOXD9 (ENSOANG00000008615) #21	HOXD8 (ENSOANG00000036079) #22	HOXD4 (ENSOANG00000037495) #24	HOXD3 (ENSOANG00000038024) #23	HOXD1 (ENSOANG00000043961) #25	MTX2 (ENSOANG00000008621) #26	HNRNPA3 (ENSOANG00000008622) #27	NFE2L2 (ENSOANG00000039992) #28	AGPS (ENSOANG00000008624) #29	ENSOANG00000008625 #32	PDE11A (ENSOANG00000008626) #33	OSBPL6 (ENSOANG00000008628) #36	PRKRA (ENSOANG00000008630) #37	PJVK (ENSOANG00000008632)	FKBP7 (ENSOANG00000044696)	PLEKHA3 (ENSOANG00000008635)	ENSOANG00000045033
Sauria	ANCESTRAL SPECIES		ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Episquamata	ANCESTRAL SPECIES		ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Toxicofera	ANCESTRAL SPECIES	10	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a.c #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.j #32	ENSGT00390000010116.i #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Elapidae	ANCESTRAL SPECIES		ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a.c #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.j #32	ENSGT00390000010116.i #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a.d #34	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Indian cobra	MODERN SPECIES		GPR155 (ENSNNAG00000000128) #9	ENSNNAG00000000127	CHRNA1 (ENSNNAG00000000125) #11	ENSNNAG00000000121 #12	ENSNNAG00000000119	ENSNNAG00000000117	ENSNNAG00000000114 #12	ATF2 (ENSNNAG00000000112) #13	ATP5MC3 (ENSNNAG00000000110) #14	LNPK (ENSNNAG00000000108) #15	EVX2 (ENSNNAG00000000104) #16	HOXD13 (ENSNNAG00000000102) #17	HOXD11 (ENSNNAG00000000101) #19	HOXD10 (ENSNNAG00000000100) #20	HOXD9 (ENSNNAG00000000098) #21	HOXD8 (ENSNNAG00000000096) #22	HOXD4 (ENSNNAG00000000094) #24	HOXD3 (ENSNNAG00000000093) #23	HOXD1 (ENSNNAG00000000092) #25	ENSNNAG00000000090	MTX2 (ENSNNAG00000000088) #26	ENSNNAG00000000087	NFE2L2 (ENSNNAG00000000084) #28	AGPS (ENSNNAG00000000082) #29	ENSNNAG00000000080 #32	PDE11A (ENSNNAG00000000076) #33	ENSNNAG00000000074 #34	PRKRA (ENSNNAG00000000071) #37	OSBPL6 (ENSNNAG00000000050) #36	PJVK (ENSNNAG00000000041)	FKBP7 (ENSNNAG00000000038)
Elapidae_a	ANCESTRAL SPECIES	5	ENSGT00940000162304	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a.c #12	ENSGT01000000218334	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.lc #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.j #32	ENSGT00390000010116.i #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a.d #34	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Blue-lipped sea krait	MODERN SPECIES	3112														ENSLLTG00000006536	HOXD9 (ENSLLTG00000006509) #21	HOXD8 (ENSLLTG00000006484) #22	HOXD4 (ENSLLTG00000010444) #24	HOXD1 (ENSLLTG00000010428) #25
Acanthophiinae	ANCESTRAL SPECIES	7	ENSGT00390000000673.b	ENSGT00940000162304	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a.c #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a.lc #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.j #32	ENSGT00390000010116.i #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a.d #34	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Mainland tiger snake	MODERN SPECIES	93	SP9 (ENSNSUG00000011499)	CIR1 (ENSNSUG00000011459) #7	ENSNSUG00000011458 #8	GPR155 (ENSNSUG00000011455) #9	ENSNSUG00000011452	CHRNA1 (ENSNSUG00000011450) #11	CHN1 (ENSNSUG00000011448) #12	ATF2 (ENSNSUG00000011447) #13	ENSNSUG00000011445 #14	LNPK (ENSNSUG00000011230) #15	EVX2 (ENSNSUG00000011227) #16	HOXD13 (ENSNSUG00000011225) #17	HOXD11 (ENSNSUG00000011224) #19	HOXD10 (ENSNSUG00000011221) #20	HOXD9 (ENSNSUG00000011220) #21	HOXD8 (ENSNSUG00000011219) #22	HOXD4 (ENSNSUG00000011217) #24	HOXD3 (ENSNSUG00000011215) #23	HOXD1 (ENSNSUG00000011213) #25	MTX2 (ENSNSUG00000011211) #26
Eastern brown snake	MODERN SPECIES	7	OLA1 (ENSPTXG00000000329)	SP9 (ENSPTXG00000000321)	CIR1 (ENSPTXG00000000304) #7	SCRN3 (ENSPTXG00000000283) #8	GPR155 (ENSPTXG00000000262) #9	ENSPTXG00000000245	CHRNA1 (ENSPTXG00000000220) #11	CHN1 (ENSPTXG00000000161) #12	ATF2 (ENSPTXG00000000105) #13	ENSPTXG00000000082 #14	LNPK (ENSPTXG00000000058) #15	EVX2 (ENSPTXG00000000029) #16	HOXD13 (ENSPTXG00000000024) #17	HOXD10 (ENSPTXG00000003623) #20	HOXD9 (ENSPTXG00000003620) #21	HOXD8 (ENSPTXG00000003619) #22	HOXD4 (ENSPTXG00000003615) #24	HOXD3 (ENSPTXG00000003613) #23	HOXD1 (ENSPTXG00000003611) #25	MTX2 (ENSPTXG00000003605) #26	ENSPTXG00000003601	NFE2L2 (ENSPTXG00000003594) #28	AGPS (ENSPTXG00000003592) #29	ENSPTXG00000003590 #32	ENSPTXG00000003587 #32	PDE11A (ENSPTXG00000003586) #33	ENSPTXG00000003584 #34	OSBPL6 (ENSPTXG00000003580) #36	PRKRA (ENSPTXG00000003579) #37	PJVK (ENSPTXG00000003578)	FKBP7 (ENSPTXG00000003577)
Lizard	MODERN SPECIES	970									ENSACAG00000044334	LNPK (ENSACAG00000017917) #15	EVX2 (ENSACAG00000017916) #16	HOXD13 (ENSACAG00000039935) #17	HOXD12 (ENSACAG00000017914) #18	HOXD11 (ENSACAG00000007282) #19	HOXD10 (ENSACAG00000017910) #20	HOXD8 (ENSACAG00000044230) #22	HOXD4 (ENSACAG00000017905) #24	HOXD3 (ENSACAG00000017904) #23	HOXD1 (ENSACAG00000006543) #25	MTX2 (ENSACAG00000006488) #26
Laterata	ANCESTRAL SPECIES	30	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964
Common wall lizard	MODERN SPECIES		CIR1 (ENSPMRG00000000186) #7	SCRN3 (ENSPMRG00000000165) #8	GPR155 (ENSPMRG00000000135) #9	WIPF1 (ENSPMRG00000000116)	CHRNA1 (ENSPMRG00000000100) #11	CHN1 (ENSPMRG00000004341) #12	ATF2 (ENSPMRG00000004321) #13	ENSPMRG00000004311 #14	ENSPMRG00000004309	LNPK (ENSPMRG00000004264) #15	EVX2 (ENSPMRG00000004255) #16	HOXD13 (ENSPMRG00000004253) #17	HOXD12 (ENSPMRG00000004249) #18	HOXD11 (ENSPMRG00000004246) #19	HOXD10 (ENSPMRG00000004241) #20	HOXD8 (ENSPMRG00000004233) #22	HOXD4 (ENSPMRG00000004227) #24	HOXD3 (ENSPMRG00000004224) #23	HOXD1 (ENSPMRG00000004218) #25	MTX2 (ENSPMRG00000004174) #26	HNRNPA3 (ENSPMRG00000004153) #27	NFE2L2 (ENSPMRG00000004147) #28	AGPS (ENSPMRG00000004129) #29	ENSPMRG00000004125 #32	PDE11A (ENSPMRG00000004113) #33	ENSPMRG00000004105 #34	OSBPL6 (ENSPMRG00000003515) #36	ENSPMRG00000003417 #37	PJVK (ENSPMRG00000003405)	FKBP7 (ENSPMRG00000003396)	PLEKHA3 (ENSPMRG00000003392)
Argentine black and white tegu	MODERN SPECIES	18	CIR1 (ENSSMRG00000018195) #7	SCRN3 (ENSSMRG00000018196) #8	GPR155 (ENSSMRG00000018197) #9	WIPF1 (ENSSMRG00000018198)	CHRNA1 (ENSSMRG00000018200) #11	CHN1 (ENSSMRG00000018201) #12	ATF2 (ENSSMRG00000018203) #13	ENSSMRG00000018204 #14	LNPK (ENSSMRG00000018206) #15	EVX2 (ENSSMRG00000018207) #16	HOXD13 (ENSSMRG00000018208) #17	HOXD12 (ENSSMRG00000018209) #18	HOXD11 (ENSSMRG00000018210) #19	HOXD10 (ENSSMRG00000018211) #20	HOXD9 (ENSSMRG00000018212) #21	HOXD8 (ENSSMRG00000018213) #22	HOXD3 (ENSSMRG00000018215) #23	HOXD4 (ENSSMRG00000018216) #24	HOXD1 (ENSSMRG00000018217) #25	MTX2 (ENSSMRG00000018218) #26	ENSSMRG00000018224	NFE2L2 (ENSSMRG00000018226) #28	AGPS (ENSSMRG00000018227) #29	ENSSMRG00000018228	ENSSMRG00000018230 #34	ENSSMRG00000018231 #35	ENSSMRG00000018232 #35	OSBPL6 (ENSSMRG00000018233) #36	PRKRA (ENSSMRG00000018234) #37	PJVK (ENSSMRG00000018235)	ENSSMRG00000018236
Archelosauria	ANCESTRAL SPECIES	8	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Cryptodira	ANCESTRAL SPECIES	5	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964.d
Testudinidae	ANCESTRAL SPECIES	8	ENSGT00940000162304	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b	ENSGT00940000159964.d
Goode s thornscrub tortoise	MODERN SPECIES	2	GPR155 (ENSGEVG00005010493) #9	WIPF1 (ENSGEVG00005010455)	CHRNA1 (ENSGEVG00005010229) #11	ENSGEVG00005010137 #12	ENSGEVG00005010115	ENSGEVG00005010081 #12	ATF2 (ENSGEVG00005010051) #13	ENSGEVG00005009994 #14	LNPK (ENSGEVG00005009864) #15	EVX2 (ENSGEVG00005009804) #16	HOXD13 (ENSGEVG00005009780) #17	HOXD12 (ENSGEVG00005009748) #18	HOXD11 (ENSGEVG00005009700) #19	HOXD10 (ENSGEVG00005009665) #20	ENSGEVG00005009551	HOXD8 (ENSGEVG00005009500) #22	HOXD4 (ENSGEVG00005009454) #24	HOXD3 (ENSGEVG00005009410) #23	HOXD1 (ENSGEVG00005009340) #25	MTX2 (ENSGEVG00005020106) #26	HNRNPA3 (ENSGEVG00005020097) #27	NFE2L2 (ENSGEVG00005020090) #28	AGPS (ENSGEVG00005019755) #29	ENSGEVG00005019518 #32	ENSGEVG00005019504	ENSGEVG00005019493 #34	RBM45 (ENSGEVG00005019483) #35	OSBPL6 (ENSGEVG00005019328) #36	PRKRA (ENSGEVG00005019255) #37	PJVK (ENSGEVG00005019241)	ENSGEVG00005019232
Abingdon island giant tortoise	MODERN SPECIES	1035	SCRN3 (ENSCABG00000005868) #8	GPR155 (ENSCABG00000005860) #9	WIPF1 (ENSCABG00000005855)	CHRNA1 (ENSCABG00000005846) #11	CHN1 (ENSCABG00000005836) #12	ENSCABG00000005833	ATF2 (ENSCABG00000005829) #13	ATP5MC3 (ENSCABG00000005827) #14	LNPK (ENSCABG00000005471) #15	EVX2 (ENSCABG00000005465) #16	HOXD13 (ENSCABG00000005464) #17	HOXD12 (ENSCABG00000005463) #18	HOXD11 (ENSCABG00000005462) #19	HOXD10 (ENSCABG00000005460) #20	ENSCABG00000005458	HOXD8 (ENSCABG00000005456) #22	HOXD4 (ENSCABG00000005454) #24	HOXD3 (ENSCABG00000005452) #23	HOXD1 (ENSCABG00000005451) #25	MTX2 (ENSCABG00000005448) #26
Emydidae	ANCESTRAL SPECIES	4	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00940000157618 #37	ENSGT00950000183140.a.b.c	ENSGT00940000159964.d
Three-toed box turtle	MODERN SPECIES	25	CIR1 (ENSTMTG00000015849) #7	SCRN3 (ENSTMTG00000015872) #8	GPR155 (ENSTMTG00000015892) #9	WIPF1 (ENSTMTG00000015938)	CHRNA1 (ENSTMTG00000016015) #11	CHN1 (ENSTMTG00000016233) #12	ATF2 (ENSTMTG00000016268) #13	ATP5MC3 (ENSTMTG00000016312) #14	LNPK (ENSTMTG00000016336) #15	EVX2 (ENSTMTG00000016382) #16	HOXD13 (ENSTMTG00000016398) #17	HOXD12 (ENSTMTG00000016406) #18	HOXD11 (ENSTMTG00000016420) #19	HOXD10 (ENSTMTG00000016440) #20	HOXD9 (ENSTMTG00000016450) #21	HOXD8 (ENSTMTG00000016482) #22	HOXD4 (ENSTMTG00000016507) #24	HOXD3 (ENSTMTG00000016516) #23	HOXD1 (ENSTMTG00000016527) #25	MTX2 (ENSTMTG00000016539) #26	HNRNPA3 (ENSTMTG00000016553) #27	NFE2L2 (ENSTMTG00000016586) #28	AGPS (ENSTMTG00000016599) #29	ENSTMTG00000016654 #32	ENSTMTG00000016667	ENSTMTG00000016712 #34	RBM45 (ENSTMTG00000016722) #35	OSBPL6 (ENSTMTG00000016769) #36	PRKRA (ENSTMTG00000017277) #37	PJVK (ENSTMTG00000017294)	FKBP7 (ENSTMTG00000017327)
painted turtle	MODERN SPECIES	2363	SCRN3 (ENSCPBG00000003876) #8	GPR155 (ENSCPBG00000003847) #9	WIPF1 (ENSCPBG00000003821)	CHRNA1 (ENSCPBG00000003798) #11	ENSCPBG00000003769 #12	ATF2 (ENSCPBG00000003739) #13	ATP5MC3 (ENSCPBG00000003721) #14	ENSCPBG00000003699	LNPK (ENSCPBG00000003649) #15	EVX2 (ENSCPBG00000003612) #16	HOXD13 (ENSCPBG00000003603) #17	HOXD12 (ENSCPBG00000003590) #18	HOXD11 (ENSCPBG00000003578) #19	HOXD10 (ENSCPBG00000003567) #20	ENSCPBG00000003539	HOXD8 (ENSCPBG00000003524) #22	HOXD4 (ENSCPBG00000003507) #24	HOXD3 (ENSCPBG00000003500) #23	HOXD1 (ENSCPBG00000003489) #25	MTX2 (ENSCPBG00000003480) #26	HNRNPA3 (ENSCPBG00000003430) #27	NFE2L2 (ENSCPBG00000003397) #28	AGPS (ENSCPBG00000003348) #29	ENSCPBG00000003305 #32	ENSCPBG00000003283	ENSCPBG00000003254 #34	RBM45 (ENSCPBG00000003246) #35	OSBPL6 (ENSCPBG00000003121) #36	ENSCPBG00000003060	ENSCPBG00000003042	ENSCPBG00000003031
Archosauria	ANCESTRAL SPECIES	6	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00950000183140.a.b	ENSGT00940000159964
Australian saltwater crocodile	MODERN SPECIES	66	CIR1 (ENSCPRG00005013911) #7	SCRN3 (ENSCPRG00005013907) #8	GPR155 (ENSCPRG00005013904) #9	WIPF1 (ENSCPRG00005013893)	CHRNA1 (ENSCPRG00005013873) #11	CHN1 (ENSCPRG00005013868) #12	ATF2 (ENSCPRG00005013860) #13	ATP5MC3 (ENSCPRG00005013858) #14	LNPK (ENSCPRG00005013854) #15	EVX2 (ENSCPRG00005013841) #16	HOXD13 (ENSCPRG00005013840) #17	HOXD12 (ENSCPRG00005013839) #18	HOXD11 (ENSCPRG00005013836) #19	HOXD10 (ENSCPRG00005013834) #20	HOXD9 (ENSCPRG00005013832) #21	HOXD8 (ENSCPRG00005013830) #22	HOXD4 (ENSCPRG00005013826) #24	HOXD3 (ENSCPRG00005013823) #23	HOXD1 (ENSCPRG00005013818) #25	MTX2 (ENSCPRG00005013807) #26	ENSCPRG00005013800	HNRNPA3 (ENSCPRG00005013786) #27	NFE2L2 (ENSCPRG00005013780) #28	AGPS (ENSCPRG00005013779) #29	ENSCPRG00005013775 #32	ENSCPRG00005013750	ENSCPRG00005013733 #34	RBM45 (ENSCPRG00005013721) #35	OSBPL6 (ENSCPRG00005013696) #36	FKBP7 (ENSCPRG00005013688)	ENSCPRG00005013675
Aves	ANCESTRAL SPECIES	8	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00950000183140.a.b	ENSGT00940000159964
African ostrich	MODERN SPECIES	838	OLA1 (ENSSCUG00000017471)	CIR1 (ENSSCUG00000017475) #7	SCRN3 (ENSSCUG00000017477) #8	GPR155 (ENSSCUG00000017479) #9	ENSSCUG00000017481	CHRNA1 (ENSSCUG00000017484) #11	CHN1 (ENSSCUG00000017488) #12	ATF2 (ENSSCUG00000017491) #13	ATP5MC3 (ENSSCUG00000017492) #14	LNPK (ENSSCUG00000017495) #15	HOXD12 (ENSSCUG00000017497) #18	HOXD11 (ENSSCUG00000017498) #19	HOXD10 (ENSSCUG00000017499) #20	ENSSCUG00000017500	HOXD9 (ENSSCUG00000017501) #21	HOXD8 (ENSSCUG00000017502) #22	HOXD4 (ENSSCUG00000017503) #24	MTX2 (ENSSCUG00000017505) #26
Neognathae	ANCESTRAL SPECIES	6	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00950000183140.a.b	ENSGT00940000159964
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Golden eagle	MODERN SPECIES	22	CIR1 (ENSACCG00020004036) #7	SCRN3 (ENSACCG00020004026) #8	GPR155 (ENSACCG00020004015) #9	WIPF1 (ENSACCG00020004004)	CHRNA1 (ENSACCG00020003985) #11	CHN1 (ENSACCG00020003968) #12	ATF2 (ENSACCG00020003942) #13	ATP5MC3 (ENSACCG00020003917) #14	LNPK (ENSACCG00020003901) #15	EVX2 (ENSACCG00020003885) #16	HOXD13 (ENSACCG00020003861) #17	HOXD12 (ENSACCG00020003850) #18	HOXD11 (ENSACCG00020003844) #19	HOXD10 (ENSACCG00020003829) #20	HOXD9 (ENSACCG00020003811) #21	HOXD8 (ENSACCG00020003802) #22	HOXD4 (ENSACCG00020003785) #24	HOXD3 (ENSACCG00020003777) #23	MTX2 (ENSACCG00020003762) #26	HNRNPA3 (ENSACCG00020003720) #27	NFE2L2 (ENSACCG00020003695) #28	AGPS (ENSACCG00020003672) #29	ENSACCG00020003656 #32	ENSACCG00020003639	ENSACCG00020003614 #34	RBM45 (ENSACCG00020003596) #35	OSBPL6 (ENSACCG00020003534) #36	PJVK (ENSACCG00020003494)	FKBP7 (ENSACCG00020003479)	PLEKHA3 (ENSACCG00020003458)	ENSACCG00020003442
Kakapo	MODERN SPECIES	22	CIR1 (ENSSHBG00005003557) #7	SCRN3 (ENSSHBG00005003550) #8	GPR155 (ENSSHBG00005003538) #9	WIPF1 (ENSSHBG00005003524)	CHRNA1 (ENSSHBG00005003452) #11	CHN1 (ENSSHBG00005003384) #12	ATF2 (ENSSHBG00005003358) #13	ATP5MC3 (ENSSHBG00005003340) #14	LNPK (ENSSHBG00005003318) #15	EVX2 (ENSSHBG00005003303) #16	HOXD13 (ENSSHBG00005003286) #17	HOXD12 (ENSSHBG00005003274) #18	HOXD11 (ENSSHBG00005003263) #19	HOXD10 (ENSSHBG00005003256) #20	HOXD9 (ENSSHBG00005003249) #21	HOXD8 (ENSSHBG00005003238) #22	HOXD4 (ENSSHBG00005003224) #24	HOXD3 (ENSSHBG00005003209) #23	MTX2 (ENSSHBG00005003180) #26	HNRNPA3 (ENSSHBG00005003156) #27	NFE2L2 (ENSSHBG00005003133) #28	AGPS (ENSSHBG00005003110) #29	ENSSHBG00005003095 #32	ENSSHBG00005003059	ENSSHBG00005003038 #34	RBM45 (ENSSHBG00005003026) #35	OSBPL6 (ENSSHBG00005002344) #36	PJVK (ENSSHBG00005002010)	FKBP7 (ENSSHBG00005001990)	PLEKHA3 (ENSSHBG00005000809)	ENSSHBG00005000796
Passeriformes	ANCESTRAL SPECIES	6	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000164264	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Great tit	MODERN SPECIES	27	CIR1 (ENSPMJG00000018569) #7	SCRN3 (ENSPMJG00000018568) #8	GPR155 (ENSPMJG00000018567) #9	ENSPMJG00000018566	CHRNA1 (ENSPMJG00000018564) #11	CHN1 (ENSPMJG00000018538) #12	ATF2 (ENSPMJG00000018537) #13	ATP5MC3 (ENSPMJG00000018536) #14	LNPK (ENSPMJG00000018533) #15	EVX2 (ENSPMJG00000018532) #16	HOXD13 (ENSPMJG00000018531) #17	HOXD12 (ENSPMJG00000018530) #18	HOXD11 (ENSPMJG00000018529) #19	HOXD10 (ENSPMJG00000018528) #20	HOXD9 (ENSPMJG00000018527) #21	HOXD8 (ENSPMJG00000018525) #22	HOXD4 (ENSPMJG00000018523) #24	HOXD3 (ENSPMJG00000018522) #23	MTX2 (ENSPMJG00000018521) #26	HNRNPA3 (ENSPMJG00000018517) #27	NFE2L2 (ENSPMJG00000018516) #28	AGPS (ENSPMJG00000018409) #29	ENSPMJG00000018408 #32	ENSPMJG00000018407 #33	ENSPMJG00000018406	ENSPMJG00000018405	RBM45 (ENSPMJG00000018404) #35	OSBPL6 (ENSPMJG00000018403) #36	PJVK (ENSPMJG00000018402)	FKBP7 (ENSPMJG00000018401)	PLEKHA3 (ENSPMJG00000018400)
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.F
Flycatcher	MODERN SPECIES	26	SCRN3 (ENSFALG00000003013) #8	GPR155 (ENSFALG00000003023) #9	ENSFALG00000027529	ENSFALG00000003030	CHRNA1 (ENSFALG00000003034) #11	CHN1 (ENSFALG00000003058) #12	ATF2 (ENSFALG00000003087) #13	ATP5MC3 (ENSFALG00000003095) #14	LNPK (ENSFALG00000003104) #15	EVX2 (ENSFALG00000003109) #16	HOXD13 (ENSFALG00000003118) #17	HOXD12 (ENSFALG00000003122) #18	HOXD11 (ENSFALG00000014318) #19	HOXD10 (ENSFALG00000003142) #20	HOXD9 (ENSFALG00000025965) #21	HOXD8 (ENSFALG00000027818) #22	HOXD4 (ENSFALG00000026047) #24	HOXD3 (ENSFALG00000003190) #23	MTX2 (ENSFALG00000003201) #26	HNRNPA3 (ENSFALG00000003215) #27	NFE2L2 (ENSFALG00000003227) #28	AGPS (ENSFALG00000003257) #29	ENSFALG00000015252 #32	PDE11A (ENSFALG00000003284) #33	RBM45 (ENSFALG00000003330) #35	OSBPL6 (ENSFALG00000003369) #36	PJVK (ENSFALG00000003412)	FKBP7 (ENSFALG00000003417)	PLEKHA3 (ENSFALG00000027197)	ENSFALG00000023020	ENSFALG00000028946
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000164264	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b
Medium ground finch	MODERN SPECIES	1	SCRN3 (ENSGFOG00000006425) #8	GPR155 (ENSGFOG00000006436) #9	ENSGFOG00000006445	CHRNA1 (ENSGFOG00000006450) #11	CHN1 (ENSGFOG00000006455) #12	ENSGFOG00000006464	ATF2 (ENSGFOG00000006478) #13	ATP5MC3 (ENSGFOG00000006500) #14	LNPK (ENSGFOG00000006507) #15	HOXD13 (ENSGFOG00000006517) #17	HOXD12 (ENSGFOG00000006522) #18	HOXD11 (ENSGFOG00000006526) #19	HOXD10 (ENSGFOG00000006531) #20	ENSGFOG00000006537	ENSGFOG00000006539 #21	HOXD8 (ENSGFOG00000006540) #22	HOXD4 (ENSGFOG00000006548) #24	ENSGFOG00000006552 #23	MTX2 (ENSGFOG00000006557) #26	HNRNPA3 (ENSGFOG00000006562) #27	NFE2L2 (ENSGFOG00000006575) #28	AGPS (ENSGFOG00000006623) #29	ENSGFOG00000007048 #32	ENSGFOG00000007051 #33	ENSGFOG00000007056	RBM45 (ENSGFOG00000007073) #35	OSBPL6 (ENSGFOG00000007096) #36	PJVK (ENSGFOG00000007120)	FKBP7 (ENSGFOG00000007132)	PLEKHA3 (ENSGFOG00000007165)	ENSGFOG00000007175
Passeroidea	ANCESTRAL SPECIES	8	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000164264	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850	ENSGT01100000263532.C.c.b	ENSGT01100000263523.B
Zebra finch	MODERN SPECIES	29	CIR1 (ENSTGUG00000008746) #7	SCRN3 (ENSTGUG00000008770) #8	GPR155 (ENSTGUG00000008786) #9	WIPF1 (ENSTGUG00000008798)	CHRNA1 (ENSTGUG00000008827) #11	CHN1 (ENSTGUG00000008848) #12	ATF2 (ENSTGUG00000008880) #13	ATP5MC3 (ENSTGUG00000008907) #14	LNPK (ENSTGUG00000021038) #15	EVX2 (ENSTGUG00000008931) #16	HOXD13 (ENSTGUG00000022083) #17	HOXD12 (ENSTGUG00000008938) #18	HOXD11 (ENSTGUG00000008941) #19	HOXD10 (ENSTGUG00000008948) #20	HOXD9 (ENSTGUG00000008955) #21	HOXD8 (ENSTGUG00000022095) #22	HOXD4 (ENSTGUG00000008959) #24	HOXD3 (ENSTGUG00000025792) #23	MTX2 (ENSTGUG00000019630) #26	HNRNPA3 (ENSTGUG00000008996) #27	NFE2L2 (ENSTGUG00000009026) #28	AGPS (ENSTGUG00000009031) #29	ENSTGUG00000009073	RBM45 (ENSTGUG00000009116) #35	OSBPL6 (ENSTGUG00000009140) #36	PJVK (ENSTGUG00000009184)	FKBP7 (ENSTGUG00000009189)	PLEKHA3 (ENSTGUG00000009194)	ENSTGUG00000023205	ENSTGUG00000025243	ENSTGUG00000026449
Common canary	MODERN SPECIES	8	OLA1 (ENSSCAG00000016031)	CIR1 (ENSSCAG00000016033) #7	SCRN3 (ENSSCAG00000016037) #8	GPR155 (ENSSCAG00000016043) #9	ENSSCAG00000016047	CHRNA1 (ENSSCAG00000016051) #11	CHN1 (ENSSCAG00000016062) #12	ATF2 (ENSSCAG00000016084) #13	ATP5MC3 (ENSSCAG00000016089) #14	LNPK (ENSSCAG00000016094) #15	HOXD13 (ENSSCAG00000016098) #17	HOXD12 (ENSSCAG00000016102) #18	HOXD11 (ENSSCAG00000016103) #19	HOXD10 (ENSSCAG00000016104) #20	ENSSCAG00000016106	HOXD8 (ENSSCAG00000016107) #22	HOXD4 (ENSSCAG00000016111) #24	HOXD3 (ENSSCAG00000016112) #23	MTX2 (ENSSCAG00000016113) #26	HNRNPA3 (ENSSCAG00000016118) #27	NFE2L2 (ENSSCAG00000016126) #28	AGPS (ENSSCAG00000016170) #29	ENSSCAG00000016236 #32	ENSSCAG00000016248	RBM45 (ENSSCAG00000016272) #35	ENSSCAG00000016274	OSBPL6 (ENSSCAG00000016275) #36	PJVK (ENSSCAG00000016277)	ENSSCAG00000016278	ENSSCAG00000016281	PLEKHA3 (ENSSCAG00000016282)
Galloanserae	DUPLICATION
Galloanserae	DUPLICATION
Galloanserae	ANCESTRAL SPECIES	7	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296.p	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653.c.a #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Phasianidae	ANCESTRAL SPECIES	8	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296.p	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653.c.a #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296.p	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653.c.a #22	ENSGT00940000157270 #24	ENSGT00940000160027 #23	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00950000183140.a.b	ENSGT00940000159964	ENSGT00940000155850
Chicken	MODERN SPECIES	36	CIR1 (ENSGALG00010022585) #7	SCRN3 (ENSGALG00010022568) #8	GPR155 (ENSGALG00010022552) #9	WIPF1 (ENSGALG00010022538)	CHRNA1 (ENSGALG00010022515) #11	CHN1 (ENSGALG00010026697) #12	ATF2 (ENSGALG00010022485) #13	ATP5G3 (ENSGALG00010022456) #14	LNPK (ENSGALG00010022433) #15	EVX2 (ENSGALG00010025816) #16	HOXD13 (ENSGALG00010024790) #17	HOXD12 (ENSGALG00010024782) #18	HOXD11 (ENSGALG00010024780) #19	HOXD10 (ENSGALG00010026746) #20	HOXD9 (ENSGALG00010024763) #21	HOXD8 (ENSGALG00010024753) #22	HOXD4 (ENSGALG00010024746) #24	HOXD3 (ENSGALG00010024724) #23	MTX2 (ENSGALG00010024183) #26	HNRNPA3 (ENSGALG00010024144) #27	NFE2L2 (ENSGALG00010024107) #28	AGPS (ENSGALG00010024011) #29	TTC30B (ENSGALG00010026261) #32	ENSGALG00010023920	ENSGALG00010023848 #34	RBM45 (ENSGALG00010023793) #35	OSBPL6 (ENSGALG00010023623) #36	PJVK (ENSGALG00010023559)	FKBP7 (ENSGALG00010023533)	PLEKHA3 (ENSGALG00010023496)	TTN (ENSGALG00010022969)
Turkey	MODERN SPECIES	27	ENSMGAG00000012246	ENSMGAG00000016901	ENSMGAG00000019349	ENSMGAG00000012255	ESYT3 (ENSMGAG00000012283)	ENSMGAG00000012271	FAIM (ENSMGAG00000012268)	ENSMGAG00000012263	ENSMGAG00000012308	ENSMGAG00000012295	TMEM37 (ENSMGAG00000015938)	STEAP3 (ENSMGAG00000012322)	ENSMGAG00000012320	DBI (ENSMGAG00000012315)	ENSMGAG00000012324	ENSMGAG00000017418 #22	ENSMGAG00000020970 #22	ENSMGAG00000009660 #19	ENSMGAG00000009673 #18	ENSMGAG00000009678 #15	ENSMGAG00000009721 #14	ATF2 (ENSMGAG00000009702) #13	ENSMGAG00000020727	ENSMGAG00000021396	ENSMGAG00000009752 #11	ENSMGAG00000009726 #12	ENSMGAG00000009779	ENSMGAG00000021645	ENSMGAG00000020130 #9	ENSMGAG00000009790 #9	ENSMGAG00000018366 #8
Japanese quail	MODERN SPECIES	25	CIR1 (ENSCJPG00005017750) #7	SCRN3 (ENSCJPG00005017749) #8	GPR155 (ENSCJPG00005017748) #9	ENSCJPG00005017747	CHRNA1 (ENSCJPG00005017746) #11	CHN1 (ENSCJPG00005017745) #12	ATF2 (ENSCJPG00005017743) #13	ATP5MC3 (ENSCJPG00005017742) #14	LNPK (ENSCJPG00005017736) #15	EVX2 (ENSCJPG00005017735) #16	HOXD13 (ENSCJPG00005017734) #17	HOXD12 (ENSCJPG00005017733) #18	HOXD11 (ENSCJPG00005017732) #19	HOXD10 (ENSCJPG00005017731) #20	HOXD9 (ENSCJPG00005017730) #21	HOXD8 (ENSCJPG00005017729) #22	HOXD4 (ENSCJPG00005017727) #24	HOXD3 (ENSCJPG00005017726) #23	HOXD1 (ENSCJPG00005017724) #25	MTX2 (ENSCJPG00005017723) #26	HNRNPA3 (ENSCJPG00005017720) #27	NFE2L2 (ENSCJPG00005017719) #28	AGPS (ENSCJPG00005017718) #29	ENSCJPG00005017717 #32	PDE11A (ENSCJPG00005017716) #33	ENSCJPG00005017715 #34	RBM45 (ENSCJPG00005017714) #35	OSBPL6 (ENSCJPG00005017349) #36	PJVK (ENSCJPG00005017347)	ENSCJPG00005017346	ENSCJPG00005017345
Anatidae	ANCESTRAL SPECIES	10	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296.p	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653.c.a #22	ENSGT00940000160027 #23	ENSGT00940000157270 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147 #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a #34	ENSGT00680000100059 #35	ENSGT00940000156791 #36	ENSGT00950000183140.a.b	ENSGT00940000159964
Pink-footed goose	MODERN SPECIES	20	CIR1 (ENSABRG00000001225) #7	SCRN3 (ENSABRG00000001275) #8	GPR155 (ENSABRG00000001308) #9	WIPF1 (ENSABRG00000002070)	CHRNA1 (ENSABRG00000002084) #11	CHN1 (ENSABRG00000002131) #12	ATF2 (ENSABRG00000002181) #13	ATP5MC3 (ENSABRG00000002218) #14	LNPK (ENSABRG00000002302) #15	EVX2 (ENSABRG00000002357) #16	HOXD13 (ENSABRG00000002397) #17	HOXD12 (ENSABRG00000002420) #18	HOXD11 (ENSABRG00000002426) #19	HOXD10 (ENSABRG00000002435) #20	HOXD9 (ENSABRG00000002443) #21	HOXD8 (ENSABRG00000002447) #22	HOXD3 (ENSABRG00000002455) #23	HOXD4 (ENSABRG00000002472) #24	HOXD1 (ENSABRG00000002496) #25	MTX2 (ENSABRG00000002506) #26	ENSABRG00000002541	HNRNPA3 (ENSABRG00000002552) #27	NFE2L2 (ENSABRG00000002594) #28	AGPS (ENSABRG00000002617) #29	ENSABRG00000002659 #32	PDE11A (ENSABRG00000002784) #33	ENSABRG00000003166 #34	RBM45 (ENSABRG00000003201) #35	OSBPL6 (ENSABRG00000003210) #36	PJVK (ENSABRG00000003243)	FKBP7 (ENSABRG00000003404)
Galloanserae	ANCESTRAL SPECIES																	ENSGT00940000161653.c.b #22
Phasianidae	ANCESTRAL SPECIES																	ENSGT00940000161653.c.b #22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00940000161653.c.b #22
Turkey	MODERN SPECIES	27	ENSMGAG00000016901	ENSMGAG00000019349	ENSMGAG00000012255	ESYT3 (ENSMGAG00000012283)	ENSMGAG00000012271	FAIM (ENSMGAG00000012268)	ENSMGAG00000012263	ENSMGAG00000012308	ENSMGAG00000012295	TMEM37 (ENSMGAG00000015938)	STEAP3 (ENSMGAG00000012322)	ENSMGAG00000012320	DBI (ENSMGAG00000012315)	ENSMGAG00000012324	ENSMGAG00000017418 #22	ENSMGAG00000020970 #22	ENSMGAG00000009660 #19	ENSMGAG00000009673 #18	ENSMGAG00000009678 #15	ENSMGAG00000009721 #14	ATF2 (ENSMGAG00000009702) #13	ENSMGAG00000020727	ENSMGAG00000021396	ENSMGAG00000009752 #11	ENSMGAG00000009726 #12	ENSMGAG00000009779	ENSMGAG00000021645	ENSMGAG00000020130 #9	ENSMGAG00000009790 #9	ENSMGAG00000018366 #8	ENSMGAG00000009826
Galloanserae	ANCESTRAL SPECIES																	ENSGT00940000161653.d #22
Anatidae	ANCESTRAL SPECIES																	ENSGT00940000161653.d #22
Duck	MODERN SPECIES	25	CIR1 (ENSAPLG00000008087) #7	SCRN3 (ENSAPLG00000008066) #8	GPR155 (ENSAPLG00000008000) #9	ENSAPLG00000025159	CHRNA1 (ENSAPLG00000007803) #11	CHN1 (ENSAPLG00000007680) #12	ATF2 (ENSAPLG00000007673) #13	ATP5MC3 (ENSAPLG00000025020) #14	LNPK (ENSAPLG00000008383) #15	ENSAPLG00000021400	HOXD13 (ENSAPLG00000008742) #17	HOXD12 (ENSAPLG00000008820) #18	HOXD11 (ENSAPLG00000020921) #19	HOXD10 (ENSAPLG00000008956) #20	HOXD9 (ENSAPLG00000023656) #21	HOXD8 (ENSAPLG00000008959) #22	HOXD3 (ENSAPLG00000025122) #23	HOXD4 (ENSAPLG00000008983) #24	MTX2 (ENSAPLG00000009123) #26	HNRNPA3 (ENSAPLG00000009620) #27	NFE2L2 (ENSAPLG00000010103) #28	AGPS (ENSAPLG00000010251) #29	ENSAPLG00000002228 #32	ENSAPLG00000010831	ENSAPLG00000010932 #34	RBM45 (ENSAPLG00000011049) #35	OSBPL6 (ENSAPLG00000011717) #36	PJVK (ENSAPLG00000012766)	FKBP7 (ENSAPLG00000013044)	PLEKHA3 (ENSAPLG00000013080)	ENSAPLG00000021067