Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296.t #10	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #31	ENSGT00940000162151 #32	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618 #35	ENSGT00950000183140.a.b #36	ENSGT00940000159964 #37	ENSGT00940000155850
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296.t #10	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #31	ENSGT00940000162151 #32	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618 #35	ENSGT00950000183140.a.b #36	ENSGT00940000159964 #37	ENSGT00940000155850
Guinea pig	MODERN SPECIES	3	CIR1 (ENSCPOG00000010275) #7	SCRN3 (ENSCPOG00000010281) #8	GPR155 (ENSCPOG00000010286) #9	ENSCPOG00000034131 #10	CHRNA1 (ENSCPOG00000000036) #11	ENSCPOG00000002789 #12	ATF2 (ENSCPOG00000004637) #13	ATP5MC3 (ENSCPOG00000040161) #14	LNPK (ENSCPOG00000010971) #15	EVX2 (ENSCPOG00000006711) #16	HOXD13 (ENSCPOG00000006722) #17	HOXD12 (ENSCPOG00000005496) #18	ENSCPOG00000019766 #19	HOXD10 (ENSCPOG00000011368) #20	HOXD9 (ENSCPOG00000015006) #21	HOXD8 (ENSCPOG00000015005) #22	HOXD4 (ENSCPOG00000036552) #23	HOXD3 (ENSCPOG00000034932) #24	HOXD1 (ENSCPOG00000005509) #25	MTX2 (ENSCPOG00000011099) #26	ENSCPOG00000027250 #27	ENSCPOG00000004251 #28	NFE2L2 (ENSCPOG00000031261) #29	AGPS (ENSCPOG00000000679) #30	ENSCPOG00000000681 #31	PDE11A (ENSCPOG00000000682) #32	RBM45 (ENSCPOG00000000684) #33	OSBPL6 (ENSCPOG00000002816) #34	ENSCPOG00000003900 #35	PJVK (ENSCPOG00000037882) #36	FKBP7 (ENSCPOG00000037159) #37
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00730000111135 #7	ENSGT00390000013474.a #8	ENSGT00390000004153 #9	ENSGT00910000144296.t #10	ENSGT00940000156851 #11	ENSGT01030000234635.a.b.a.b.b.a.a #12	ENSGT00940000156582 #13	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #31	ENSGT00940000162151 #32	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618 #35	ENSGT00950000183140.a.b #36	ENSGT00940000159964 #37	ENSGT00940000155850
Long-tailed chinchilla	MODERN SPECIES	110	KLKB1 (ENSCLAG00000016848)	F11 (ENSCLAG00000012318)	MTNR1A (ENSCLAG00000015269)	FAT1 (ENSCLAG00000013169)	ENSCLAG00000015923	ZFP42 (ENSCLAG00000011822)	TRIML2 (ENSCLAG00000011159)	TRIML1 (ENSCLAG00000014494)	LNPK (ENSCLAG00000015033) #15	EVX2 (ENSCLAG00000014389) #16	HOXD13 (ENSCLAG00000013095) #17	HOXD12 (ENSCLAG00000013058) #18	ENSCLAG00000012563 #19	HOXD10 (ENSCLAG00000012482) #20	HOXD9 (ENSCLAG00000012447) #21	ENSCLAG00000011108 #22	HOXD4 (ENSCLAG00000014461) #23	ENSCLAG00000013605 #24	HOXD1 (ENSCLAG00000012505) #25	MTX2 (ENSCLAG00000011598) #26	ENSCLAG00000011088	HNRNPA3 (ENSCLAG00000012855) #28	NFE2L2 (ENSCLAG00000013122) #29	ENSCLAG00000012626	ENSCLAG00000013627	AGPS (ENSCLAG00000013279) #30	ENSCLAG00000017938 #31	ENSCLAG00000013714 #31	PDE11A (ENSCLAG00000013013) #32	RBM45 (ENSCLAG00000015215) #33	OSBPL6 (ENSCLAG00000011433) #34
Degu	MODERN SPECIES	106	ENSODEG00000008975 ##10	ENSODEG00000019598	CHRNA1 (ENSODEG00000010458) #11	CHN1 (ENSODEG00000008560) #12	ATF2 (ENSODEG00000010947) #13	ENSODEG00000010951 #14	ENSODEG00000010385	LNPK (ENSODEG00000010046) #15	ENSODEG00000008992	EVX2 (ENSODEG00000010771) #16	HOXD13 (ENSODEG00000008793) #17	HOXD12 (ENSODEG00000008376) #18	ENSODEG00000010934 #19	HOXD10 (ENSODEG00000010382) #20	HOXD9 (ENSODEG00000008626) #21	ENSODEG00000010496 #22	HOXD4 (ENSODEG00000010297) #23	HOXD3 (ENSODEG00000009722) #24	HOXD1 (ENSODEG00000008961) #25	ENSODEG00000008879	MTX2 (ENSODEG00000008062) #26	ENSODEG00000009697	ENSODEG00000009265	NFE2L2 (ENSODEG00000010043) #29	AGPS (ENSODEG00000008272) #30	ENSODEG00000020058 #31	ENSODEG00000019592 #31	PDE11A (ENSODEG00000010682) #32	ENSODEG00000019574	RBM45 (ENSODEG00000007959) #33	ENSODEG00000019659
Naked mole-rat female	MODERN SPECIES	22	GPR155 (ENSHGLG00000012529) #9	ENSHGLG00000036822 ##10	ENSHGLG00000039411 ##10	CHRNA1 (ENSHGLG00000015432) #11	ENSHGLG00000016114 #12	ENSHGLG00000018805 #13	Atp5mc3 (ENSHGLG00000033165) #14	ENSHGLG00000040802	LNPK (ENSHGLG00000004015) #15	EVX2 (ENSHGLG00000004218) #16	HOXD13 (ENSHGLG00000050884) #17	HOXD12 (ENSHGLG00000005403) #18	HOXD11 (ENSHGLG00000034527) #19	HOXD9 (ENSHGLG00000007185) #21	HOXD10 (ENSHGLG00000033462) #20	ENSHGLG00000003577 #22	HOXD4 (ENSHGLG00000037842) #23	HOXD3 (ENSHGLG00000003761) #24	HOXD1 (ENSHGLG00000004072) #25	MTX2 (ENSHGLG00000004177) #26	ENSHGLG00000012734	ENSHGLG00000046644	ENSHGLG00000036655	HNRNPA3 (ENSHGLG00000005451) #28	NFE2L2 (ENSHGLG00000006475) #29	AGPS (ENSHGLG00000007541) #30	ENSHGLG00000036841 #31	TTC30B (ENSHGLG00000042840) #31	ENSHGLG00000005226 #32	ENSHGLG00000006609	ENSHGLG00000007342 #33