Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Primates	ANCESTRAL SPECIES	13	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb ##30	ENSGT00390000010116.kb #30	ENSGT00940000162151 #31	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb ##30	ENSGT00390000010116.kb #30	ENSGT00940000162151 #31	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb ##30	ENSGT00390000010116.kb #30	ENSGT00940000162151 #31	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33
Vervet Monkey	MODERN SPECIES	1	SP9 (ENSCSAG00000014648) #7	CIR1 (ENSCSAG00000014627) #8	SCRN3 (ENSCSAG00000014584) #9	GPR155 (ENSCSAG00000014572) #10	WIPF1 (ENSCSAG00000014556) #11	CHRNA1 (ENSCSAG00000014545) #12	CHN1 (ENSCSAG00000014539) #13	ATF2 (ENSCSAG00000014523) #14	LNPK (ENSCSAG00000014506) #15	EVX2 (ENSCSAG00000014486) #16	HOXD13 (ENSCSAG00000014475) #17	HOXD12 (ENSCSAG00000014464) #18	HOXD11 (ENSCSAG00000014457) #19	HOXD10 (ENSCSAG00000014448) #20	HOXD9 (ENSCSAG00000014441) #21	HOXD8 (ENSCSAG00000014437) #22	HOXD4 (ENSCSAG00000014429) #23	HOXD3 (ENSCSAG00000014422) #24	HOXD1 (ENSCSAG00000014419) #25	MTX2 (ENSCSAG00000014412) #26	ENSCSAG00000014399 #27	NFE2L2 (ENSCSAG00000014353) #28	AGPS (ENSCSAG00000014345) #29	TTC30A (ENSCSAG00000018651) #30	PDE11A (ENSCSAG00000014313) #31	ENSCSAG00000014240 #32	RBM45 (ENSCSAG00000014231) #33	OSBPL6 (ENSCSAG00000014221) #34	PJVK (ENSCSAG00000014212) #35	FKBP7 (ENSCSAG00000014194) #36	PLEKHA3 (ENSCSAG00000014182) #37
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00940000165163	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #15	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb ##30	ENSGT00390000010116.kb #30	ENSGT00940000162151 #31	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33
Macaca	ANCESTRAL SPECIES	15	ENSGT00940000165163	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00390000018390.jc.n	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb ##30	ENSGT00390000010116.kb #30	ENSGT00940000162151 #31	ENSGT00940000168702	ENSGT00680000100059 #33	ENSGT00940000156791 #34
Pig-tailed macaque	MODERN SPECIES	585	WIPF1 (ENSMNEG00000045560) #11	CHRNA1 (ENSMNEG00000043912) #12	ENSMNEG00000009103	CHN1 (ENSMNEG00000033120) #13	ATF2 (ENSMNEG00000037988) #14	ATP5MC3 (ENSMNEG00000029106)	ENSMNEG00000035184	LNPK (ENSMNEG00000028702) #15	ENSMNEG00000024050	EVX2 (ENSMNEG00000028323) #16	HOXD13 (ENSMNEG00000027142) #17	HOXD12 (ENSMNEG00000002891) #18	HOXD11 (ENSMNEG00000029127) #19	HOXD10 (ENSMNEG00000033923) #20	HOXD9 (ENSMNEG00000044938) #21	HOXD8 (ENSMNEG00000028133) #22	HOXD4 (ENSMNEG00000030845) #23	HOXD3 (ENSMNEG00000040202) #24	ENSMNEG00000018849	HOXD1 (ENSMNEG00000010514) #25	MTX2 (ENSMNEG00000032881) #26	ENSMNEG00000026533	ENSMNEG00000034936 ##27	NFE2L2 (ENSMNEG00000028208) #28	AGPS (ENSMNEG00000043672) #29	TTC30B (ENSMNEG00000011632) ##30	TTC30A (ENSMNEG00000000192) #30	PDE11A (ENSMNEG00000037080) #31
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00390000004153 #10	ENSGT00940000166143.A.a.b.b.b.b.a.b.b	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00950000182827.A.j	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000170471.B.a.a.a	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb ##30	ENSGT00390000010116.kb #30	ENSGT00940000162151 #31	ENSGT00940000168702	ENSGT00680000100059 #33
Crab-eating macaque	MODERN SPECIES	3	ENSMFAG00000039499	ENSMFAG00000060672	WIPF1 (ENSMFAG00000034165) #11	CHRNA1 (ENSMFAG00000042992) #12	CHN1 (ENSMFAG00000002404) #13	ATF2 (ENSMFAG00000002278) #14	ATP5MC3 (ENSMFAG00000056189)	ENSMFAG00000002936	LNPK (ENSMFAG00000002105) #15	ENSMFAG00000053875	HOXD13 (ENSMFAG00000033237) #17	HOXD12 (ENSMFAG00000051547) #18	ENSMFAG00000043724 #19	HOXD10 (ENSMFAG00000031117) #20	HOXD9 (ENSMFAG00000000099) #21	HOXD8 (ENSMFAG00000065214) #22	HOXD4 (ENSMFAG00000052240) #23	HOXD3 (ENSMFAG00000034065) #24	ENSMFAG00000047422	HOXD1 (ENSMFAG00000046035) #25	MTX2 (ENSMFAG00000026822) #26	ENSMFAG00000065500	ENSMFAG00000058081	HNRNPA3 (ENSMFAG00000000823) #27	NFE2L2 (ENSMFAG00000041108) #28	AGPS (ENSMFAG00000038904) #29	TTC30B (ENSMFAG00000057741) ##30	TTC30A (ENSMFAG00000053112) #30	PDE11A (ENSMFAG00000042268) #31	ENSMFAG00000034055	RBM45 (ENSMFAG00000042524) #33
Rhesus	MODERN SPECIES	3	SCRN3 (ENSMMUG00000023009) #9	GPR155 (ENSMMUG00000021012) #10	ENSMMUG00000053004	WIPF1 (ENSMMUG00000009593) #11	CHRNA1 (ENSMMUG00000021796) #12	CHN1 (ENSMMUG00000021797) #13	ATF2 (ENSMMUG00000003947) #14	ATP5MC3 (ENSMMUG00000003954)	LNPK (ENSMMUG00000023498) #15	EVX2 (ENSMMUG00000061506) #16	HOXD13 (ENSMMUG00000055831) #17	HOXD12 (ENSMMUG00000023501) #18	HOXD11 (ENSMMUG00000047915) #19	HOXD10 (ENSMMUG00000046368) #20	HOXD9 (ENSMMUG00000032599) #21	HOXD8 (ENSMMUG00000023504) #22	HOXD4 (ENSMMUG00000060947) #23	HOXD3 (ENSMMUG00000051761) #24	ENSMMUG00000052177	HOXD1 (ENSMMUG00000065344) #25	MTX2 (ENSMMUG00000010185) #26	ENSMMUG00000031367	ENSMMUG00000054983	ENSMMUG00000062299	HNRNPA3 (ENSMMUG00000001858) #27	NFE2L2 (ENSMMUG00000001861) #28	ENSMMUG00000065205	AGPS (ENSMMUG00000008502) #29	TTC30B (ENSMMUG00000043597) ##30	TTC30A (ENSMMUG00000041827) #30	PDE11A (ENSMMUG00000002011) #31
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00950000182827.A.i.b	ENSGT00950000182827.A.j	ENSGT00390000001859 #15	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb ##30	ENSGT00390000010116.kb #30	ENSGT00940000162151 #31	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33
Olive baboon	MODERN SPECIES	1	SCRN3 (ENSPANG00000001316) #9	GPR155 (ENSPANG00000006559) #10	WIPF1 (ENSPANG00000019541) #11	CHRNA1 (ENSPANG00000007790) #12	CHN1 (ENSPANG00000008236) #13	ENSPANG00000005473	ATF2 (ENSPANG00000004806) #14	ATP5MC3 (ENSPANG00000031591)	LNPK (ENSPANG00000011787) #15	ENSPANG00000039545 #16	ENSPANG00000044695 #17	ENSPANG00000044332 #18	HOXD11 (ENSPANG00000049530) #19	HOXD10 (ENSPANG00000050198) #20	HOXD9 (ENSPANG00000001061) #21	HOXD8 (ENSPANG00000049199) #22	HOXD4 (ENSPANG00000000542) #23	HOXD3 (ENSPANG00000000543) #24	HOXD1 (ENSPANG00000009593) #25	MTX2 (ENSPANG00000013333) #26	ENSPANG00000045287	ENSPANG00000018337 #27	NFE2L2 (ENSPANG00000039361) #28	AGPS (ENSPANG00000004764) #29	TTC30B (ENSPANG00000046724) ##30	TTC30A (ENSPANG00000041839) #30	PDE11A (ENSPANG00000025222) #31	ENSPANG00000029672	RBM45 (ENSPANG00000016088) #33	ENSPANG00000046096	OSBPL6 (ENSPANG00000016378) #34
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00950000182827.A.i.b	ENSGT00950000182827.A.j	ENSGT00390000001859 #15	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb ##30	ENSGT00390000010116.kb #30	ENSGT00940000162151 #31	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33
Sooty mangabey	MODERN SPECIES	570	CHRNA1 (ENSCATG00000030584) #12	CHN1 (ENSCATG00000036640) #13	ENSCATG00000035911	ATF2 (ENSCATG00000005694) #14	ATP5MC3 (ENSCATG00000035329)	ENSCATG00000037951	ENSCATG00000041432	LNPK (ENSCATG00000039052) #15	ENSCATG00000005782	EVX2 (ENSCATG00000038250) #16	HOXD13 (ENSCATG00000031889) #17	HOXD12 (ENSCATG00000032043) #18	HOXD10 (ENSCATG00000032256) #20	HOXD11 (ENSCATG00000031157) #19	HOXD9 (ENSCATG00000037190) #21	HOXD8 (ENSCATG00000032148) #22	HOXD4 (ENSCATG00000041719) #23	HOXD3 (ENSCATG00000029355) #24	ENSCATG00000032250	HOXD1 (ENSCATG00000032397) #25	MTX2 (ENSCATG00000039959) #26	ENSCATG00000022731	HNRNPA3 (ENSCATG00000032162) #27	ENSCATG00000001855	NFE2L2 (ENSCATG00000036834) #28	AGPS (ENSCATG00000038387) #29	TTC30B (ENSCATG00000004635) ##30	TTC30A (ENSCATG00000000123) #30	PDE11A (ENSCATG00000042325) #31	ENSCATG00000008317	ENSCATG00000039319
Drill	MODERN SPECIES	1072	ENSMLEG00000029654	WIPF1 (ENSMLEG00000001484) #11	CHRNA1 (ENSMLEG00000043089) #12	ENSMLEG00000000615	CHN1 (ENSMLEG00000032406) #13	ATF2 (ENSMLEG00000035167) #14	ATP5MC3 (ENSMLEG00000043816)	ENSMLEG00000001270	LNPK (ENSMLEG00000033659) #15	EVX2 (ENSMLEG00000035528) #16	HOXD13 (ENSMLEG00000031532) #17	HOXD12 (ENSMLEG00000032533) #18	ENSMLEG00000030792 #19	HOXD10 (ENSMLEG00000044067) #20	HOXD9 (ENSMLEG00000025695) #21	ENSMLEG00000042507 #22	HOXD4 (ENSMLEG00000024188) #23	HOXD3 (ENSMLEG00000037278) #24	HOXD1 (ENSMLEG00000035890) #25	MTX2 (ENSMLEG00000002029) #26	NFE2L2 (ENSMLEG00000042705) #28	AGPS (ENSMLEG00000033858) #29	TTC30B (ENSMLEG00000027894) ##30	TTC30A (ENSMLEG00000027775) #30	ENSMLEG00000039892	ENSMLEG00000035955	PDE11A (ENSMLEG00000044286) #31	RBM45 (ENSMLEG00000042404) #33	OSBPL6 (ENSMLEG00000021439) #34	PRKRA (ENSMLEG00000019578)	PJVK (ENSMLEG00000027972) #35
Rhinopithecus	ANCESTRAL SPECIES	148						ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00950000182827.A.i.b	ENSGT00390000001859.c #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00940000154301.`b.a	ENSGT00960000186717.a	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.kb #30	ENSGT00940000162151 #31	ENSGT00390000010991.f.b	ENSGT00910000148248	ENSGT00940000168702
Golden snub-nosed monkey	MODERN SPECIES	722								ENSRROG00000041768 #15	ENSRROG00000044546	EVX2 (ENSRROG00000044705) #16	HOXD13 (ENSRROG00000040419) #17	HOXD12 (ENSRROG00000043268) #18	ENSRROG00000043226 #19	HOXD9 (ENSRROG00000032216) #21	HOXD10 (ENSRROG00000036162) #20	ENSRROG00000024611 #22	HOXD4 (ENSRROG00000026646) #23	HOXD3 (ENSRROG00000044509) #24	HOXD1 (ENSRROG00000035364) #25	ENSRROG00000038369	ENSRROG00000042876	ENSRROG00000020854	MTX2 (ENSRROG00000030249) #26	ENSRROG00000028794 #27	NFE2L2 (ENSRROG00000045317) #28	AGPS (ENSRROG00000035068) #29	TTC30A (ENSRROG00000023478) #30	PDE11A (ENSRROG00000028809) #31	ENSRROG00000041594	RBM45 (ENSRROG00000031398) #33	OSBPL6 (ENSRROG00000036096) #34
Black snub-nosed monkey	MODERN SPECIES	241							ATF2 (ENSRBIG00000041657) #14	ATP5MC3 (ENSRBIG00000040343)	ENSRBIG00000038159	LNPK (ENSRBIG00000038235) #15	HOXD13 (ENSRBIG00000033719) #17	ENSRBIG00000035253 #19	HOXD12 (ENSRBIG00000040792) #18	HOXD10 (ENSRBIG00000030470) #20	HOXD9 (ENSRBIG00000035340) #21	HOXD8 (ENSRBIG00000036417) #22	HOXD4 (ENSRBIG00000027637) #23	HOXD3 (ENSRBIG00000044829) #24	HOXD1 (ENSRBIG00000031297) #25	ENSRBIG00000032024	ENSRBIG00000042767	MTX2 (ENSRBIG00000043097) #26	ENSRBIG00000012615 ##27	NFE2L2 (ENSRBIG00000042825) #28	AGPS (ENSRBIG00000039582) #29	TTC30A (ENSRBIG00000041155) #30	ENSRBIG00000030274	ENSRBIG00000035583	PDE11A (ENSRBIG00000043623) #31	RBM45 (ENSRBIG00000033680) #33	OSBPL6 (ENSRBIG00000040280) #34
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00390000004153 #10	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb ##30	ENSGT00390000010116.kb #30	ENSGT00940000162151 #31	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a
Hominidae	ANCESTRAL SPECIES	17	ENSGT00390000004153 #10	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb ##30	ENSGT00390000010116.kb #30	ENSGT00940000162151 #31	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00390000004153 #10	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb ##30	ENSGT00390000010116.kb #30	ENSGT00940000162151 #31	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00390000004153 #10	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb ##30	ENSGT00390000010116.kb #30	ENSGT00940000162151 #31	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33
Pan	ANCESTRAL SPECIES	12	ENSGT00390000004153 #10	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.jb ##30	ENSGT00390000010116.kb #30	ENSGT00940000162151 #31	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33
Bonobo	MODERN SPECIES	15	SCRN3 (ENSPPAG00000032328) #9	GPR155 (ENSPPAG00000032733) #10	ENSPPAG00000040473	WIPF1 (ENSPPAG00000037968) #11	CHRNA1 (ENSPPAG00000024985) #12	ENSPPAG00000023882 #13	ATF2 (ENSPPAG00000027656) #14	ATP5MC3 (ENSPPAG00000036512)	LNPK (ENSPPAG00000030440) #15	ENSPPAG00000039855 #16	ENSPPAG00000010483 #17	HOXD12 (ENSPPAG00000017089) #18	ENSPPAG00000028125 #19	HOXD10 (ENSPPAG00000036046) #20	HOXD9 (ENSPPAG00000039242) #21	ENSPPAG00000034189 #22	HOXD4 (ENSPPAG00000034992) #23	HOXD3 (ENSPPAG00000031713) #24	ENSPPAG00000013988	ENSPPAG00000031665 #25	ENSPPAG00000025118	MTX2 (ENSPPAG00000043265) #26	ENSPPAG00000012679	HNRNPA3 (ENSPPAG00000023768) #27	NFE2L2 (ENSPPAG00000037501) #28	AGPS (ENSPPAG00000036868) #29	TTC30B (ENSPPAG00000019313) ##30	TTC30A (ENSPPAG00000023829) #30	PDE11A (ENSPPAG00000036387) #31	ENSPPAG00000029280	ENSPPAG00000035494
Chimpanzee	MODERN SPECIES	15	CIR1 (ENSPTRG00000012652) #8	SCRN3 (ENSPTRG00000012653) #9	GPR155 (ENSPTRG00000012655) #10	WIPF1 (ENSPTRG00000012656)	CHRNA1 (ENSPTRG00000012658) #12	CHN1 (ENSPTRG00000012659) #13	ATF2 (ENSPTRG00000012660) #14	ATP5MC3 (ENSPTRG00000047314)	LNPK (ENSPTRG00000012662) #15	EVX2 (ENSPTRG00000012663) #16	HOXD13 (ENSPTRG00000012664) #17	HOXD12 (ENSPTRG00000012665) #18	HOXD11 (ENSPTRG00000012666) #19	HOXD10 (ENSPTRG00000012667) #20	HOXD9 (ENSPTRG00000043464) #21	HOXD8 (ENSPTRG00000012669) #22	HOXD4 (ENSPTRG00000051862) #23	HOXD3 (ENSPTRG00000012672) #24	ENSPTRG00000051348	HOXD1 (ENSPTRG00000052716) #25	ENSPTRG00000023851	MTX2 (ENSPTRG00000012674) #26	ENSPTRG00000042815	HNRNPA3 (ENSPTRG00000012676) #27	NFE2L2 (ENSPTRG00000012677) #28	AGPS (ENSPTRG00000012680) #29	TTC30B (ENSPTRG00000048299) ##30	TTC30A (ENSPTRG00000044238) #30	PDE11A (ENSPTRG00000012684) #31	ENSPTRG00000046153	ENSPTRG00000051577
Human	MODERN SPECIES	11	CIR1 (ENSG00000138433) #8	SCRN3 (ENSG00000144306) #9	GPR155 (ENSG00000163328) #10	WIPF1 (ENSG00000115935) #11	CHRNA1 (ENSG00000138435) #12	CHN1 (ENSG00000128656) #13	ATF2 (ENSG00000115966) #14	ATP5MC3 (ENSG00000154518)	LNPK (ENSG00000144320) #15	EVX2 (ENSG00000174279) #16	HOXD13 (ENSG00000128714) #17	HOXD12 (ENSG00000170178) #18	HOXD11 (ENSG00000128713) #19	HOXD10 (ENSG00000128710) #20	HOXD9 (ENSG00000128709) #21	HOXD8 (ENSG00000175879) #22	HOXD3 (ENSG00000128652) #24	HOXD4 (ENSG00000170166) #23	HOXD1 (ENSG00000128645) #25	MTX2 (ENSG00000128654) #26	HNRNPA3 (ENSG00000170144) #27	NFE2L2 (ENSG00000116044) #28	AGPS (ENSG00000018510) #29	TTC30B (ENSG00000196659) ##30	TTC30A (ENSG00000197557) #30	PDE11A (ENSG00000128655) #31	RBM45 (ENSG00000155636) #33	OSBPL6 (ENSG00000079156) #34	PRKRA (ENSG00000180228)	PJVK (ENSG00000204311) #35	FKBP7 (ENSG00000079150) #36
Gorilla	MODERN SPECIES	15	SCRN3 (ENSGGOG00000034896) #9	GPR155 (ENSGGOG00000004876) #10	ENSGGOG00000005480	WIPF1 (ENSGGOG00000016773) #11	CHRNA1 (ENSGGOG00000008036) #12	CHN1 (ENSGGOG00000002177) #13	ATF2 (ENSGGOG00000027461) #14	ATP5MC3 (ENSGGOG00000036796)	LNPK (ENSGGOG00000007852) #15	EVX2 (ENSGGOG00000001335) #16	ENSGGOG00000041387 #17	ENSGGOG00000038035 #18	ENSGGOG00000044084	HOXD10 (ENSGGOG00000001341) #20	HOXD9 (ENSGGOG00000001343) #21	ENSGGOG00000009898 #22	HOXD4 (ENSGGOG00000042533) #23	HOXD3 (ENSGGOG00000037089) #24	ENSGGOG00000037792	HOXD1 (ENSGGOG00000001348) #25	ENSGGOG00000041480	ENSGGOG00000040635 #18	ENSGGOG00000040237 #17	MTX2 (ENSGGOG00000044125) #26	ENSGGOG00000037084 #9	ENSGGOG00000043877	HNRNPA3 (ENSGGOG00000006130) #27	NFE2L2 (ENSGGOG00000001231) #28	ENSGGOG00000037000	AGPS (ENSGGOG00000012114) #29	TTC30A (ENSGGOG00000009811) #30
Orangutan	MODERN SPECIES	15	ENSPPYG00000012946 #9	GPR155 (ENSPPYG00000012947) #10	WIPF1 (ENSPPYG00000012948) #11	CHRNA1 (ENSPPYG00000012949) #12	CHN1 (ENSPPYG00000012950) #13	ATF2 (ENSPPYG00000012951) #14	ENSPPYG00000041465	ATP5MC3 (ENSPPYG00000037033)	LNPK (ENSPPYG00000032630) #15	EVX2 (ENSPPYG00000012955) #16	HOXD13 (ENSPPYG00000012956) #17	HOXD12 (ENSPPYG00000012957) #18	HOXD11 (ENSPPYG00000031598) #19	HOXD10 (ENSPPYG00000012958) #20	HOXD9 (ENSPPYG00000012959) #21	HOXD8 (ENSPPYG00000037201) #22	HOXD4 (ENSPPYG00000034536) #23	HOXD3 (ENSPPYG00000012963) #24	HOXD1 (ENSPPYG00000012964) #25	ENSPPYG00000037565	MTX2 (ENSPPYG00000012966) #26	HNRNPA3 (ENSPPYG00000012967) ##27	NFE2L2 (ENSPPYG00000012968) #28	AGPS (ENSPPYG00000012969) #29	TTC30B (ENSPPYG00000034101) ##30	TTC30A (ENSPPYG00000038583) #30	PDE11A (ENSPPYG00000012972) #31	RBM45 (ENSPPYG00000012974) #33	OSBPL6 (ENSPPYG00000012975) #34	ENSPPYG00000012976	PJVK (ENSPPYG00000012977) #35
Gibbon	MODERN SPECIES	14	SCRN3 (ENSNLEG00000005880) #9	GPR155 (ENSNLEG00000005896) #10	ENSNLEG00000033625	WIPF1 (ENSNLEG00000005907) #11	CHRNA1 (ENSNLEG00000005914) #12	CHN1 (ENSNLEG00000005923) #13	ENSNLEG00000028605	ATF2 (ENSNLEG00000005938) #14	ATP5MC3 (ENSNLEG00000005971)	LNPK (ENSNLEG00000005977) #15	EVX2 (ENSNLEG00000005999) #16	HOXD13 (ENSNLEG00000029303) #17	HOXD12 (ENSNLEG00000006006) #18	HOXD10 (ENSNLEG00000006010) #20	HOXD9 (ENSNLEG00000006011) #21	ENSNLEG00000006003 #22	HOXD4 (ENSNLEG00000006014) #23	HOXD3 (ENSNLEG00000006018) #24	ENSNLEG00000027160	HOXD1 (ENSNLEG00000006019) #25	MTX2 (ENSNLEG00000006020) #26	ENSNLEG00000035565	ENSNLEG00000029348	HNRNPA3 (ENSNLEG00000028401) #27	NFE2L2 (ENSNLEG00000006029) #28	AGPS (ENSNLEG00000006030) #29	TTC30B (ENSNLEG00000033307) ##30	TTC30A (ENSNLEG00000030979) #30	PDE11A (ENSNLEG00000006056) #31	ENSNLEG00000030325	RBM45 (ENSNLEG00000006080) #33
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.lb #30	ENSGT00390000010116.mb #30	ENSGT00940000162151 #31	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Cebidae	ANCESTRAL SPECIES	11	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.lb #30	ENSGT00390000010116.mb #30	ENSGT00940000162151 #31	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.lb #30	ENSGT00390000010116.mb #30	ENSGT00940000162151 #31	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Bolivian squirrel monkey	MODERN SPECIES	46	ENSSBOG00000020259 ##27	CIR1 (ENSSBOG00000028527) #8	SCRN3 (ENSSBOG00000033089) #9	GPR155 (ENSSBOG00000034957) #10	WIPF1 (ENSSBOG00000032169) #11	CHRNA1 (ENSSBOG00000035763) #12	CHN1 (ENSSBOG00000016307) #13	ATF2 (ENSSBOG00000025461) #14	ATP5MC3 (ENSSBOG00000022688)	LNPK (ENSSBOG00000023054) #15	EVX2 (ENSSBOG00000034364) #16	HOXD13 (ENSSBOG00000032579) #17	HOXD12 (ENSSBOG00000025723) #18	HOXD10 (ENSSBOG00000020553) #20	HOXD9 (ENSSBOG00000031095) #21	ENSSBOG00000029405 #22	HOXD4 (ENSSBOG00000031535) #23	HOXD3 (ENSSBOG00000031894) #24	HOXD1 (ENSSBOG00000030906) #25	MTX2 (ENSSBOG00000025795) #26	HNRNPA3 (ENSSBOG00000034307) #27	NFE2L2 (ENSSBOG00000022740) #28	AGPS (ENSSBOG00000026720) #29	ENSSBOG00000019156 #30	ENSSBOG00000018055 #30	PDE11A (ENSSBOG00000026746) #31	RBM45 (ENSSBOG00000005469) #33	OSBPL6 (ENSSBOG00000020436) #34	ENSSBOG00000035006	PRKRA (ENSSBOG00000012105)	PJVK (ENSSBOG00000022982) #35
Capuchin	MODERN SPECIES	110	GPR155 (ENSCCAG00000032455) #10	WIPF1 (ENSCCAG00000012994) #11	CHRNA1 (ENSCCAG00000032209) #12	CHN1 (ENSCCAG00000027038) #13	ENSCCAG00000034541	ATF2 (ENSCCAG00000035902) #14	ENSCCAG00000020514	ENSCCAG00000015947	LNPK (ENSCCAG00000022702) #15	EVX2 (ENSCCAG00000032502) #16	HOXD13 (ENSCCAG00000032945) #17	HOXD12 (ENSCCAG00000026325) #18	HOXD11 (ENSCCAG00000034968) #19	HOXD10 (ENSCCAG00000020764) #20	HOXD9 (ENSCCAG00000021007) #21	HOXD8 (ENSCCAG00000001172) #22	ENSCCAG00000035403 #23
Marmoset	MODERN SPECIES	18	WIPF1 (ENSCJAG00000048519) #11	CHRNA1 (ENSCJAG00000008007) #12	CHN1 (ENSCJAG00000008041) #13	ATF2 (ENSCJAG00000008085) #14	ATP5MC3 (ENSCJAG00000008207)	ENSCJAG00000080703	ENSCJAG00000084464	ENSCJAG00000022954	LNPK (ENSCJAG00000008226) #15	EVX2 (ENSCJAG00000077487) #16	HOXD13 (ENSCJAG00000040882) #17	HOXD12 (ENSCJAG00000079626) #18	HOXD11 (ENSCJAG00000048503) #19	HOXD10 (ENSCJAG00000008269) #20	HOXD9 (ENSCJAG00000046789) #21	HOXD8 (ENSCJAG00000008284) #22	HOXD4 (ENSCJAG00000008286) #23	HOXD3 (ENSCJAG00000063715) #24	HOXD1 (ENSCJAG00000008290) #25	MTX2 (ENSCJAG00000039174) #26	ENSCJAG00000072603	ENSCJAG00000006928 #27	NFE2L2 (ENSCJAG00000008340) #28	ENSCJAG00000059559	ENSCJAG00000021732 #30	AGPS (ENSCJAG00000021508) #29	ENSCJAG00000081808	ENSCJAG00000081742	PDE11A (ENSCJAG00000014554) #31	ENSCJAG00000021516 #33	ENSCJAG00000072241
Mas night monkey	MODERN SPECIES	1333				ENSANAG00000011341	ENSANAG00000037338 #14	ENSANAG00000033889	ENSANAG00000023367	ENSANAG00000021797	LNPK (ENSANAG00000019161) #15	EVX2 (ENSANAG00000031929) #16	HOXD13 (ENSANAG00000029500) #17	HOXD12 (ENSANAG00000008919) #18	HOXD11 (ENSANAG00000029678) #19	HOXD10 (ENSANAG00000025381) #20	HOXD9 (ENSANAG00000024699) #21	HOXD8 (ENSANAG00000026980) #22	HOXD4 (ENSANAG00000028028) #23	HOXD3 (ENSANAG00000026428) #24	HOXD1 (ENSANAG00000019775) #25	ENSANAG00000031061	MTX2 (ENSANAG00000022501) #26	HNRNPA3 (ENSANAG00000002931) #27	NFE2L2 (ENSANAG00000023669) #28	AGPS (ENSANAG00000019626) #29	ENSANAG00000003240 #30	ENSANAG00000025414 #31
Tarsier	MODERN SPECIES	1909																ENSTSYG00000001418 #22	HOXD4 (ENSTSYG00000032287) #23	HOXD3 (ENSTSYG00000036098) #24	MTX2 (ENSTSYG00000006401) #26
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Mouse lemur	MODERN SPECIES	30	SCRN3 (ENSMICG00000000366) #9	GPR155 (ENSMICG00000000369) #10	ENSMICG00000031974	CHRNA1 (ENSMICG00000014284) #12	ENSMICG00000038672	CHN1 (ENSMICG00000014292) #13	ATF2 (ENSMICG00000006417) #14	ATP5MC3 (ENSMICG00000006421)	LNPK (ENSMICG00000027707) #15	EVX2 (ENSMICG00000035343) #16	HOXD13 (ENSMICG00000002170) #17	HOXD12 (ENSMICG00000002172) #18	HOXD11 (ENSMICG00000048033) #19	HOXD10 (ENSMICG00000028373) #20	HOXD9 (ENSMICG00000031229) #21	HOXD8 (ENSMICG00000004277) #22	HOXD4 (ENSMICG00000043209) #23	HOXD3 (ENSMICG00000004286) #24	HOXD1 (ENSMICG00000044650) #25	MTX2 (ENSMICG00000004295) #26	ENSMICG00000027841 ##27	NFE2L2 (ENSMICG00000009559) #28	AGPS (ENSMICG00000003750) #29	ENSMICG00000003768 #30	ENSMICG00000046051 #30	ENSMICG00000030225	PDE11A (ENSMICG00000003770) #31	ENSMICG00000047030	RBM45 (ENSMICG00000003787) #33	OSBPL6 (ENSMICG00000003793) #34	PRKRA (ENSMICG00000009883)
Lemuriformes_a	ANCESTRAL SPECIES	69	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Coquerels sifaka	MODERN SPECIES	478	SCRN3 (ENSPCOG00000015456) #9	GPR155 (ENSPCOG00000014376) #10	ENSPCOG00000018466	ENSPCOG00000015733	CHRNA1 (ENSPCOG00000020642) #12	CHN1 (ENSPCOG00000018830) #13	ATF2 (ENSPCOG00000025416) #14	ATP5MC3 (ENSPCOG00000016374)	LNPK (ENSPCOG00000026983) #15	EVX2 (ENSPCOG00000022416) #16	HOXD13 (ENSPCOG00000018735) #17	HOXD12 (ENSPCOG00000022036) #18	HOXD11 (ENSPCOG00000015055) #19	HOXD10 (ENSPCOG00000023637) #20	HOXD9 (ENSPCOG00000026809) #21	HOXD8 (ENSPCOG00000024233) #22	HOXD4 (ENSPCOG00000018337) #23	HOXD3 (ENSPCOG00000017195) #24	HOXD1 (ENSPCOG00000024445) #25	MTX2 (ENSPCOG00000025077) #26	NFE2L2 (ENSPCOG00000007362) #28	AGPS (ENSPCOG00000018665) #29	PDE11A (ENSPCOG00000025830) #31	ENSPCOG00000025842	ENSPCOG00000028806	RBM45 (ENSPCOG00000021526) #33	ENSPCOG00000005659	OSBPL6 (ENSPCOG00000010731) #34	PRKRA (ENSPCOG00000018812)	PJVK (ENSPCOG00000022935) #35	FKBP7 (ENSPCOG00000018941) #36
Greater bamboo lemur	MODERN SPECIES	243	SCRN3 (ENSPSMG00000024170) #9	GPR155 (ENSPSMG00000024199) #10	WIPF1 (ENSPSMG00000024219) #11	CHRNA1 (ENSPSMG00000024264) #12	CHN1 (ENSPSMG00000024301) #13	ATF2 (ENSPSMG00000024416) #14	ATP5MC3 (ENSPSMG00000024446)	LNPK (ENSPSMG00000024460) #15	ENSPSMG00000024465	EVX2 (ENSPSMG00000024469) #16	HOXD13 (ENSPSMG00000024474) #17	HOXD12 (ENSPSMG00000024476) #18	HOXD11 (ENSPSMG00000024479) #19	HOXD10 (ENSPSMG00000024482) #20	HOXD9 (ENSPSMG00000024487) #21	HOXD8 (ENSPSMG00000024501) #22	HOXD4 (ENSPSMG00000024504) #23	HOXD3 (ENSPSMG00000024507) #24	ENSPSMG00000024512	HOXD1 (ENSPSMG00000024516) #25	NNT (ENSPSMG00000024528)	PAIP1 (ENSPSMG00000024554)	ENSPSMG00000024563
Bushbaby	MODERN SPECIES	163	GPR155 (ENSOGAG00000016571) #10	WIPF1 (ENSOGAG00000016579) #11	CHRNA1 (ENSOGAG00000000890) #12	CHN1 (ENSOGAG00000000894) #13	ATF2 (ENSOGAG00000011373) #14	ATP5MC3 (ENSOGAG00000027578)	ENSOGAG00000026184	ENSOGAG00000030354	LNPK (ENSOGAG00000030372) #15	EVX2 (ENSOGAG00000025378) #16	HOXD13 (ENSOGAG00000027055) #17	HOXD12 (ENSOGAG00000015689) #18	HOXD11 (ENSOGAG00000029520) #19	HOXD10 (ENSOGAG00000015694) #20	HOXD9 (ENSOGAG00000015697) #21	HOXD8 (ENSOGAG00000015707) #22	HOXD4 (ENSOGAG00000029168) #23	HOXD3 (ENSOGAG00000015710) #24	HOXD1 (ENSOGAG00000015712) #25	MTX2 (ENSOGAG00000016422) #26	ENSOGAG00000032690	ENSOGAG00000028132 ##27	NFE2L2 (ENSOGAG00000034393) #28	AGPS (ENSOGAG00000013184) #29	ENSOGAG00000013189 #30	ENSOGAG00000013191	ENSOGAG00000026648	RBM45 (ENSOGAG00000015195) #33	OSBPL6 (ENSOGAG00000013765) #34	PRKRA (ENSOGAG00000013971)	PJVK (ENSOGAG00000033780) #35
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Tree shrew	MODERN SPECIES	3966												EVX2 (ENSTBEG00000010517) #16	HOXD12 (ENSTBEG00000010799) #18	HOXD10 (ENSTBEG00000010925) #20	HOXD9 (ENSTBEG00000010979) #21	HOXD8 (ENSTBEG00000011462) #22	ENSTBEG00000011786 #25
Glires	ANCESTRAL SPECIES	14	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT00390000000673.b	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000164264	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Pika	MODERN SPECIES	959													ENSOPRG00000004018 #19	HOXD10 (ENSOPRG00000004038) #20	ENSOPRG00000004049 #21	HOXD8 (ENSOPRG00000004065) #22	ENSOPRG00000004081 #23	HOXD3 (ENSOPRG00000004098) #24	ENSOPRG00000004116 #25
Rabbit	MODERN SPECIES	18	SCRN3 (ENSOCUG00000011499) #9	GPR155 (ENSOCUG00000003683) #10	ENSOCUG00000036607	ENSOCUG00000005696	CHRNA1 (ENSOCUG00000024814) #12	CHN1 (ENSOCUG00000008134) #13	ATF2 (ENSOCUG00000012156) #14	ATP5MC3 (ENSOCUG00000012164)	LNPK (ENSOCUG00000008962) #15	EVX2 (ENSOCUG00000032776) #16	HOXD13 (ENSOCUG00000029547) #17	HOXD12 (ENSOCUG00000002412) #18	HOXD11 (ENSOCUG00000013942) #19	HOXD10 (ENSOCUG00000008964) #20	HOXD9 (ENSOCUG00000023956) #21	ENSOCUG00000035940 #22	HOXD4 (ENSOCUG00000002413) #23	HOXD3 (ENSOCUG00000014119) #24	HOXD1 (ENSOCUG00000015582) #25	MTX2 (ENSOCUG00000008760) #26	ENSOCUG00000025666	ENSOCUG00000030456	ENSOCUG00000002743 #27	NFE2L2 (ENSOCUG00000001009) #28	AGPS (ENSOCUG00000011521) #29	ENSOCUG00000029884 #30	ENSOCUG00000039012 #30	ENSOCUG00000008038	ENSOCUG00000039559	ENSOCUG00000025342	RBM45 (ENSOCUG00000001125) #33
Rodentia	ANCESTRAL SPECIES	14	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296.t #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36	ENSGT00940000155850 #37
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296.t #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36	ENSGT00940000155850 #37
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296.t #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36	ENSGT00940000155850 #37
Long-tailed chinchilla	MODERN SPECIES	110	KLKB1 (ENSCLAG00000016848)	F11 (ENSCLAG00000012318)	MTNR1A (ENSCLAG00000015269)	FAT1 (ENSCLAG00000013169)	ENSCLAG00000015923	ZFP42 (ENSCLAG00000011822)	TRIML2 (ENSCLAG00000011159)	TRIML1 (ENSCLAG00000014494)	LNPK (ENSCLAG00000015033) #15	EVX2 (ENSCLAG00000014389) #16	HOXD13 (ENSCLAG00000013095) #17	HOXD12 (ENSCLAG00000013058) #18	ENSCLAG00000012563 #19	HOXD10 (ENSCLAG00000012482) #20	HOXD9 (ENSCLAG00000012447) #21	ENSCLAG00000011108 #22	HOXD4 (ENSCLAG00000014461) #23	ENSCLAG00000013605 #24	HOXD1 (ENSCLAG00000012505) #25	MTX2 (ENSCLAG00000011598) #26	ENSCLAG00000011088	HNRNPA3 (ENSCLAG00000012855) #27	NFE2L2 (ENSCLAG00000013122) #28	ENSCLAG00000012626	ENSCLAG00000013627	AGPS (ENSCLAG00000013279) #29	ENSCLAG00000017938 #30	ENSCLAG00000013714 #30	PDE11A (ENSCLAG00000013013) #31	RBM45 (ENSCLAG00000015215) #33	OSBPL6 (ENSCLAG00000011433) #34
Degu	MODERN SPECIES	106	ENSODEG00000008975 #11	ENSODEG00000019598	CHRNA1 (ENSODEG00000010458) #12	CHN1 (ENSODEG00000008560) #13	ATF2 (ENSODEG00000010947) #14	ENSODEG00000010951	ENSODEG00000010385	LNPK (ENSODEG00000010046) #15	ENSODEG00000008992	EVX2 (ENSODEG00000010771) #16	HOXD13 (ENSODEG00000008793) #17	HOXD12 (ENSODEG00000008376) #18	ENSODEG00000010934 #19	HOXD10 (ENSODEG00000010382) #20	HOXD9 (ENSODEG00000008626) #21	ENSODEG00000010496 #22	HOXD4 (ENSODEG00000010297) #23	HOXD3 (ENSODEG00000009722) #24	HOXD1 (ENSODEG00000008961) #25	ENSODEG00000008879	MTX2 (ENSODEG00000008062) #26	ENSODEG00000009697	ENSODEG00000009265	NFE2L2 (ENSODEG00000010043) #28	AGPS (ENSODEG00000008272) #29	ENSODEG00000020058 #30	ENSODEG00000019592 #30	PDE11A (ENSODEG00000010682) #31	ENSODEG00000019574	RBM45 (ENSODEG00000007959) #33	ENSODEG00000019659
Guinea pig	MODERN SPECIES	3	CIR1 (ENSCPOG00000010275) #8	SCRN3 (ENSCPOG00000010281) #9	GPR155 (ENSCPOG00000010286) #10	ENSCPOG00000034131 #11	CHRNA1 (ENSCPOG00000000036) #12	ENSCPOG00000002789 #13	ATF2 (ENSCPOG00000004637) #14	ATP5MC3 (ENSCPOG00000040161)	LNPK (ENSCPOG00000010971) #15	EVX2 (ENSCPOG00000006711) #16	HOXD13 (ENSCPOG00000006722) #17	HOXD12 (ENSCPOG00000005496) #18	ENSCPOG00000019766 #19	HOXD10 (ENSCPOG00000011368) #20	HOXD9 (ENSCPOG00000015006) #21	HOXD8 (ENSCPOG00000015005) #22	HOXD4 (ENSCPOG00000036552) #23	HOXD3 (ENSCPOG00000034932) #24	HOXD1 (ENSCPOG00000005509) #25	MTX2 (ENSCPOG00000011099) #26	ENSCPOG00000027250	ENSCPOG00000004251 #27	NFE2L2 (ENSCPOG00000031261) #28	AGPS (ENSCPOG00000000679) #29	ENSCPOG00000000681 #30	PDE11A (ENSCPOG00000000682) #31	RBM45 (ENSCPOG00000000684) #33	OSBPL6 (ENSCPOG00000002816) #34	ENSCPOG00000003900	PJVK (ENSCPOG00000037882) #35	FKBP7 (ENSCPOG00000037159) #36
Naked mole-rat female	MODERN SPECIES	22	GPR155 (ENSHGLG00000012529) #10	ENSHGLG00000036822 #11	ENSHGLG00000039411 #11	CHRNA1 (ENSHGLG00000015432) #12	ENSHGLG00000016114 #13	ENSHGLG00000018805 #14	Atp5mc3 (ENSHGLG00000033165)	ENSHGLG00000040802	LNPK (ENSHGLG00000004015) #15	EVX2 (ENSHGLG00000004218) #16	HOXD13 (ENSHGLG00000050884) #17	HOXD12 (ENSHGLG00000005403) #18	HOXD11 (ENSHGLG00000034527) #19	HOXD9 (ENSHGLG00000007185) #21	HOXD10 (ENSHGLG00000033462) #20	ENSHGLG00000003577 #22	HOXD4 (ENSHGLG00000037842) #23	HOXD3 (ENSHGLG00000003761) #24	HOXD1 (ENSHGLG00000004072) #25	MTX2 (ENSHGLG00000004177) #26	ENSHGLG00000012734	ENSHGLG00000046644	ENSHGLG00000036655	HNRNPA3 (ENSHGLG00000005451) #27	NFE2L2 (ENSHGLG00000006475) #28	AGPS (ENSHGLG00000007541) #29	ENSHGLG00000036841 #30	TTC30B (ENSHGLG00000042840) #30	ENSHGLG00000005226 #31	ENSHGLG00000006609	ENSHGLG00000007342 #33
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a.xb	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Marmotini	ANCESTRAL SPECIES	2	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a.xb.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.gb #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Alpin marmot	MODERN SPECIES	5	ENSMMMG00000023702 #9	GPR155 (ENSMMMG00000023705) #10	ENSMMMG00000023714	WIPF1 (ENSMMMG00000023716) #11	CHRNA1 (ENSMMMG00000023717) #12	CHN1 (ENSMMMG00000023718) #13	ENSMMMG00000023730	ATF2 (ENSMMMG00000023733) #14	ENSMMMG00000023748	LNPK (ENSMMMG00000023755) #15	HOXD13 (ENSMMMG00000023759) #17	HOXD12 (ENSMMMG00000023760) #18	ENSMMMG00000023762 #19	HOXD10 (ENSMMMG00000023763) #20	HOXD9 (ENSMMMG00000023764) #21	ENSMMMG00000023765 #22	HOXD4 (ENSMMMG00000023767) #23	HOXD3 (ENSMMMG00000023768) #24	MTX2 (ENSMMMG00000023772) #26	NFE2L2 (ENSMMMG00000023776) #28	AGPS (ENSMMMG00000023778) #29
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a.xb.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.gb #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Squirrel	MODERN SPECIES	109	OLA1 (ENSSTOG00000015547)	CIR1 (ENSSTOG00000001233) #8	SCRN3 (ENSSTOG00000001236) #9	GPR155 (ENSSTOG00000001239) #10	ENSSTOG00000004271 #11	CHRNA1 (ENSSTOG00000004281) #12	CHN1 (ENSSTOG00000004301) #13	ATF2 (ENSSTOG00000014079) #14	ENSSTOG00000013572	LNPK (ENSSTOG00000014498) #15	EVX2 (ENSSTOG00000014512) #16	HOXD13 (ENSSTOG00000004117) #17	HOXD12 (ENSSTOG00000004918) #18	HOXD10 (ENSSTOG00000003935) #20	HOXD9 (ENSSTOG00000026761) #21	ENSSTOG00000023453 #22	HOXD4 (ENSSTOG00000029055) #23	HOXD3 (ENSSTOG00000014680) #24	HOXD1 (ENSSTOG00000012230) #25	MTX2 (ENSSTOG00000014688) #26	ENSSTOG00000030884	HNRNPA3 (ENSSTOG00000025125) #27	NFE2L2 (ENSSTOG00000000313) #28	AGPS (ENSSTOG00000012623) #29	ENSSTOG00000003267 #30	PDE11A (ENSSTOG00000012639) #31	ENSSTOG00000008853	RBM45 (ENSSTOG00000002708) #33	OSBPL6 (ENSSTOG00000006092) #34	PRKRA (ENSSTOG00000006156)	PJVK (ENSSTOG00000028411) #35
Arctic ground squirrel	MODERN SPECIES	323				WIPF1 (ENSUPAG00010020649) #11	CHRNA1 (ENSUPAG00010020641) #12	CHN1 (ENSUPAG00010020575) #13	ATF2 (ENSUPAG00010020491) #14	ENSUPAG00010020485	LNPK (ENSUPAG00010020452) #15	EVX2 (ENSUPAG00010020442) #16	HOXD13 (ENSUPAG00010020441) #17	HOXD12 (ENSUPAG00010020440) #18	HOXD11 (ENSUPAG00010020439) #19	HOXD10 (ENSUPAG00010020434) #20	HOXD9 (ENSUPAG00010020431) #21	HOXD8 (ENSUPAG00010020425) #22	HOXD4 (ENSUPAG00010020416) #23	HOXD3 (ENSUPAG00010020410) #24	HOXD1 (ENSUPAG00010020407) #25	ENSUPAG00010020400	MTX2 (ENSUPAG00010020394) #26
Eurasian red squirrel	MODERN SPECIES	12	SCRN3 (ENSSVLG00005002703) #9	GPR155 (ENSSVLG00005002750) #10	WIPF1 (ENSSVLG00005002786) #11	CHRNA1 (ENSSVLG00005002856) #12	CHN1 (ENSSVLG00005003041) #13	ENSSVLG00005003279 #14	ENSSVLG00005003430	ENSSVLG00005003466	LNPK (ENSSVLG00005003500) #15	EVX2 (ENSSVLG00005003539) #16	HOXD13 (ENSSVLG00005003554) #17	HOXD12 (ENSSVLG00005003565) #18	HOXD11 (ENSSVLG00005003581) #19	HOXD10 (ENSSVLG00005003599) #20	HOXD9 (ENSSVLG00005003618) #21	HOXD8 (ENSSVLG00005003645) #22	HOXD4 (ENSSVLG00005003676) #23	HOXD1 (ENSSVLG00005003762) #25	MTX2 (ENSSVLG00005003812) #26	ENSSVLG00005003881 #27	ENSSVLG00005003903 #28	AGPS (ENSSVLG00005003959) #29	ENSSVLG00005003996 #30	ENSSVLG00005004006 #30	ENSSVLG00005004018 #30	PDE11A (ENSSVLG00005004050) #31	ENSSVLG00005004113	RBM45 (ENSSVLG00005004137) #33	OSBPL6 (ENSSVLG00005004465) #34	PRKRA (ENSSVLG00005005027)	PJVK (ENSSVLG00005005095) #35
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Kangaroo rat	MODERN SPECIES	324	ENSDORG00000008681	Sp9 (ENSDORG00000025534) #7	Cir1 (ENSDORG00000013676) #8	ENSDORG00000013682 #9	Gpr155 (ENSDORG00000013683) #10	ENSDORG00000027952 #11	Chrna1 (ENSDORG00000001136) #12	Chn1 (ENSDORG00000002182) #13	Atf2 (ENSDORG00000024409) #14	Atp5g3 (ENSDORG00000012973)	Lnpk (ENSDORG00000015736) #15	Evx2 (ENSDORG00000009432) #16	Hoxd12 (ENSDORG00000009434) #18	ENSDORG00000029219 #19	Hoxd10 (ENSDORG00000009436) #20	ENSDORG00000027655 #22	Hoxd4 (ENSDORG00000028681) #23	Hoxd3 (ENSDORG00000029389) #24	Hoxd1 (ENSDORG00000009445) #25	Mtx2 (ENSDORG00000003848) #26	Hnrnpa3 (ENSDORG00000011155) #27	Nfe2l2 (ENSDORG00000030173) #28	Agps (ENSDORG00000006480) #29	ENSDORG00000028567 #30	ENSDORG00000028697 #30	ENSDORG00000023150 #30	Cyct (ENSDORG00000004101)	Rbm45 (ENSDORG00000015831) #33	Osbpl6 (ENSDORG00000001912) #34	Prkra (ENSDORG00000013338)	Pjvk (ENSDORG00000013339) #35
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Muroidea	ANCESTRAL SPECIES	34	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a.a #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a.a #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00940000171387	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000154808.a.a	ENSGT00940000153147.m.a.a.a.b.a.b.p #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a.a #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618
Chinese hamster chok1gshd	MODERN SPECIES	188	Gpr155 (ENSCGRG00001014219) #10	ENSCGRG00001021853	Chrna1 (ENSCGRG00001020291) #12	ENSCGRG00001019803	Chn1 (ENSCGRG00001019152) #13	Atf2 (ENSCGRG00001015584) #14	Atp5g3 (ENSCGRG00001012041)	Lnpk (ENSCGRG00001011515) #15	ENSCGRG00001006802	Evx2 (ENSCGRG00001003649) #16	Hoxd13 (ENSCGRG00001001661) #17	Hoxd12 (ENSCGRG00001000877) #18	Hoxd11 (ENSCGRG00001010386) #19	Hoxd10 (ENSCGRG00001008302) #20	Hoxd9 (ENSCGRG00001005991) #21	Hoxd8 (ENSCGRG00001013130) #22	Hoxd4 (ENSCGRG00001012360) #23	Hoxd3 (ENSCGRG00001011863) #24	Hoxd1 (ENSCGRG00001011572) #25	ENSCGRG00001014512	Mtx2 (ENSCGRG00001014247) #26	ENSCGRG00001003235	ENSCGRG00001008592 #27	Nfe2l2 (ENSCGRG00001005715) #28	Agps (ENSCGRG00001003863) #29	Ttc30b (ENSCGRG00001002157) #30	Ttc30a1 (ENSCGRG00001000892) #30	ENSCGRG00001003072	Pde11a (ENSCGRG00001011422) #31	Cyct (ENSCGRG00001008096)	Rbm45 (ENSCGRG00001005759) #33
Golden Hamster	MODERN SPECIES	618	Scrn3 (ENSMAUG00000020703) #9	Gpr155 (ENSMAUG00000019481) #10	ENSMAUG00000019796	Chrna1 (ENSMAUG00000017924) #12	Chn1 (ENSMAUG00000018455) #13	Atf2 (ENSMAUG00000018366) #14	Atp5g3 (ENSMAUG00000017685)	ENSMAUG00000020495	Lnpk (ENSMAUG00000018821) #15	Evx2 (ENSMAUG00000020383) #16	Hoxd13 (ENSMAUG00000017185) #17	Hoxd12 (ENSMAUG00000018416) #18	ENSMAUG00000020249 #19	Hoxd10 (ENSMAUG00000016731) #20	Hoxd9 (ENSMAUG00000018538) #21	Hoxd8 (ENSMAUG00000018092) #22	Hoxd4 (ENSMAUG00000018545) #23	Hoxd3 (ENSMAUG00000018318) #24	Hoxd1 (ENSMAUG00000018401) #25	Mtx2 (ENSMAUG00000017870) #26	ENSMAUG00000017462	Nfe2l2 (ENSMAUG00000017700) #28	Agps (ENSMAUG00000017317) #29	Pde11a (ENSMAUG00000021257) #31	Cyct (ENSMAUG00000016722)	Rbm45 (ENSMAUG00000016948) #33	Osbpl6 (ENSMAUG00000018609) #34	Prkra (ENSMAUG00000019631)	Pjvk (ENSMAUG00000018018) #35	Fkbp7 (ENSMAUG00000016606) #36	Plekha3 (ENSMAUG00000019341) #37
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a.a #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Prairie vole	MODERN SPECIES	12	Cir1 (ENSMOCG00000017545) #8	Scrn3 (ENSMOCG00000018966) #9	Gpr155 (ENSMOCG00000003950) #10	ENSMOCG00000014660	Chrna1 (ENSMOCG00000020367) #12	Chn1 (ENSMOCG00000005574) #13	Atf2 (ENSMOCG00000015301) #14	ENSMOCG00000012786	Lnpk (ENSMOCG00000022345) #15	Evx2 (ENSMOCG00000010466) #16	Hoxd13 (ENSMOCG00000014618) #17	Hoxd12 (ENSMOCG00000018953) #18	Hoxd11 (ENSMOCG00000019226) #19	Hoxd10 (ENSMOCG00000006052) #20	Hoxd9 (ENSMOCG00000005870) #21	Hoxd8 (ENSMOCG00000022746) #22	Hoxd3 (ENSMOCG00000022552) #24	Hoxd4 (ENSMOCG00000013646) #23	Hoxd1 (ENSMOCG00000014086) #25	Mtx2 (ENSMOCG00000017110) #26	ENSMOCG00000019409 ##27	Nfe2l2 (ENSMOCG00000020760) #28	Agps (ENSMOCG00000017476) #29	Ttc30b (ENSMOCG00000001580) #30	ENSMOCG00000001098	Ttc30a2 (ENSMOCG00000002802) #30	Pde11a (ENSMOCG00000005959) #31	Cyct (ENSMOCG00000021506)	Rbm45 (ENSMOCG00000017295) #33	Osbpl6 (ENSMOCG00000017155) #34	Prkra (ENSMOCG00000004548)
Northern American deer mouse	MODERN SPECIES	17	Scrn3 (ENSPEMG00000022424) #9	Gpr155 (ENSPEMG00000022602) #10	Wipf1 (ENSPEMG00000013848) #11	Chrna1 (ENSPEMG00000012571) #12	Chn1 (ENSPEMG00000022535) #13	Atf2 (ENSPEMG00000021625) #14	Atp5g3 (ENSPEMG00000023766)	ENSPEMG00000008662	Lnpk (ENSPEMG00000017827) #15	Evx2 (ENSPEMG00000022145) #16	Hoxd13 (ENSPEMG00000022412) #17	Hoxd12 (ENSPEMG00000019240) #18	ENSPEMG00000018816 #19	Hoxd10 (ENSPEMG00000030445) #20	Hoxd9 (ENSPEMG00000006162) #21	ENSPEMG00000028623 #22	ENSPEMG00000029322	Hoxd4 (ENSPEMG00000024627) #23	Hoxd3 (ENSPEMG00000028862) #24	Hoxd1 (ENSPEMG00000021389) #25	Mtx2 (ENSPEMG00000022093) #26	Hnrnpa3 (ENSPEMG00000021885) #27	Nfe2l2 (ENSPEMG00000023181) #28	Agps (ENSPEMG00000010561) #29	ENSPEMG00000023662	Ttc30b (ENSPEMG00000001902) #30	Ttc30a1 (ENSPEMG00000025624) #30	Pde11a (ENSPEMG00000021597) #31	Cyct (ENSPEMG00000028091)	Rbm45 (ENSPEMG00000002470) #33	Osbpl6 (ENSPEMG00000010580) #34
Murinae	ANCESTRAL SPECIES	1	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a.b #30	ENSGT00390000010116.y.a.a #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618
Mus	ANCESTRAL SPECIES	1	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a.b #30	ENSGT00390000010116.y.a.a #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34
Mus_A	ANCESTRAL SPECIES		ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a.b #30	ENSGT00390000010116.y.a.a #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34
Mus_B	ANCESTRAL SPECIES	1	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00390000010116.y.a.b #30	ENSGT00390000010116.y.a.a #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618
Mouse	MODERN SPECIES	11	Cir1 (ENSMUSG00000041777) #8	Scrn3 (ENSMUSG00000008226) #9	Gpr155 (ENSMUSG00000041762) #10	Wipf1 (ENSMUSG00000075284) #11	Chrna1 (ENSMUSG00000027107) #12	Chn1 (ENSMUSG00000056486) #13	Atf2 (ENSMUSG00000027104) #14	Atp5g3 (ENSMUSG00000018770)	Lnpk (ENSMUSG00000009207) #15	Evx2 (ENSMUSG00000001815) #16	Hoxd13 (ENSMUSG00000001819) #17	Hoxd12 (ENSMUSG00000001823) #18	Hoxd11 (ENSMUSG00000042499) #19	Hoxd10 (ENSMUSG00000050368) #20	Hoxd9 (ENSMUSG00000043342) #21	Hoxd8 (ENSMUSG00000027102) #22	Hoxd3 (ENSMUSG00000079277) #24	Hoxd4 (ENSMUSG00000101174) #23	Hoxd1 (ENSMUSG00000042448) #25	Mtx2 (ENSMUSG00000027099) #26	Hnrnpa3 (ENSMUSG00000059005) #27	Nfe2l2 (ENSMUSG00000015839) #28	Agps (ENSMUSG00000042410) #29	Ttc30b (ENSMUSG00000075273) #30	Ttc30a2 (ENSMUSG00000075272) #30	Ttc30a1 (ENSMUSG00000075271) #30	Pde11a (ENSMUSG00000075270) #31	Cyct (ENSMUSG00000056436)	Rbm45 (ENSMUSG00000042369) #33	Osbpl6 (ENSMUSG00000042359) #34	Prkra (ENSMUSG00000002731)
Mus_C	ANCESTRAL SPECIES		ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.b ##27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.y.b #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Steppe mouse	MODERN SPECIES	3326	Gpr155 (ENSMSIG00000006975) #10	Wipf1 (ENSMSIG00000006899) #11	Chrna1 (ENSMSIG00000006852) #12	Chn1 (ENSMSIG00000006692) #13	ENSMSIG00000006659	Atf2 (ENSMSIG00000006546) #14	Atp5g3 (ENSMSIG00000006512)	ENSMSIG00000006495	Lnpk (ENSMSIG00000006386) #15	Evx2 (ENSMSIG00000006361) #16	Hoxd13 (ENSMSIG00000006348) #17	Hoxd12 (ENSMSIG00000006333) #18	Hoxd11 (ENSMSIG00000006326) #19	Hoxd10 (ENSMSIG00000006313) #20	Hoxd9 (ENSMSIG00000006304) #21	Hoxd8 (ENSMSIG00000006283) #22	ENSMSIG00000006186 #23	Hoxd3 (ENSMSIG00000006158) #24	Hoxd1 (ENSMSIG00000006137) #25	Mtx2 (ENSMSIG00000006053) #26	ENSMSIG00000006005	ENSMSIG00000005981	ENSMSIG00000005709 #27	Nfe2l2 (ENSMSIG00000005673) #28
spretus	MODERN SPECIES	11	Cir1 (MGP_SPRETEiJ_G0024580) #8	Scrn3 (MGP_SPRETEiJ_G0024581) #9	Gpr155 (MGP_SPRETEiJ_G0024582) #10	Wipf1 (MGP_SPRETEiJ_G0024583) #11	Chrna1 (MGP_SPRETEiJ_G0024584) #12	Chn1 (MGP_SPRETEiJ_G0024585) #13	Atf2 (MGP_SPRETEiJ_G0024586) #14	Atp5g3 (MGP_SPRETEiJ_G0024587)	Lnpk (MGP_SPRETEiJ_G0024588) #15	Evx2 (MGP_SPRETEiJ_G0024589) #16	Hoxd13 (MGP_SPRETEiJ_G0024590) #17	Hoxd12 (MGP_SPRETEiJ_G0024591) #18	Hoxd11 (MGP_SPRETEiJ_G0024592) #19	Hoxd10 (MGP_SPRETEiJ_G0024593) #20	Hoxd9 (MGP_SPRETEiJ_G0024594) #21	Hoxd8 (MGP_SPRETEiJ_G0024595) #22	Hoxd3 (MGP_SPRETEiJ_G0024596) #24	Hoxd4 (MGP_SPRETEiJ_G0024597) #23	MGP_SPRETEiJ_G0024598 #23	Hoxd1 (MGP_SPRETEiJ_G0024599) #25	Mtx2 (MGP_SPRETEiJ_G0024600) #26	MGP_SPRETEiJ_G0024601 ##27	Nfe2l2 (MGP_SPRETEiJ_G0024602) #28	Agps (MGP_SPRETEiJ_G0024603) #29	MGP_SPRETEiJ_G0024604 #30	Pde11a (MGP_SPRETEiJ_G0024605) #31	Cyct (MGP_SPRETEiJ_G0024606)	Rbm45 (MGP_SPRETEiJ_G0024607) #33	Osbpl6 (MGP_SPRETEiJ_G0024608) #34	Prkra (MGP_SPRETEiJ_G0024609)	Pjvk (MGP_SPRETEiJ_G0024610) #35
Ryukyu mouse	MODERN SPECIES	11	Cir1 (MGP_CAROLIEiJ_G0023657) #8	Scrn3 (MGP_CAROLIEiJ_G0023658) #9	Gpr155 (MGP_CAROLIEiJ_G0023659) #10	Wipf1 (MGP_CAROLIEiJ_G0023660) #11	Chrna1 (MGP_CAROLIEiJ_G0023661) #12	Chn1 (MGP_CAROLIEiJ_G0023662) #13	Atf2 (MGP_CAROLIEiJ_G0023663) #14	Atp5g3 (MGP_CAROLIEiJ_G0023664)	Lnpk (MGP_CAROLIEiJ_G0023665) #15	Evx2 (MGP_CAROLIEiJ_G0023666) #16	Hoxd13 (MGP_CAROLIEiJ_G0023667) #17	Hoxd12 (MGP_CAROLIEiJ_G0023668) #18	Hoxd11 (MGP_CAROLIEiJ_G0023669) #19	Hoxd10 (MGP_CAROLIEiJ_G0023670) #20	Hoxd9 (MGP_CAROLIEiJ_G0023671) #21	Hoxd8 (MGP_CAROLIEiJ_G0023672) #22	Hoxd3 (MGP_CAROLIEiJ_G0023673) #24	Hoxd4 (MGP_CAROLIEiJ_G0023674) #23	MGP_CAROLIEiJ_G0023675 #23	Hoxd1 (MGP_CAROLIEiJ_G0023676) #25	Mtx2 (MGP_CAROLIEiJ_G0023677) #26	MGP_CAROLIEiJ_G0023678 #27	Nfe2l2 (MGP_CAROLIEiJ_G0023679) #28	Agps (MGP_CAROLIEiJ_G0023680) #29	MGP_CAROLIEiJ_G0023681 #30	MGP_CAROLIEiJ_G0023682 #30	Pde11a (MGP_CAROLIEiJ_G0023683) #31	MGP_CAROLIEiJ_G0023684	Cyct (MGP_CAROLIEiJ_G0023685)	Rbm45 (MGP_CAROLIEiJ_G0023686) #33	Osbpl6 (MGP_CAROLIEiJ_G0023687) #34
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025109 #8	Scrn3 (MGP_PahariEiJ_G0025110) #9	Gpr155 (MGP_PahariEiJ_G0025111) #10	Wipf1 (MGP_PahariEiJ_G0025112) #11	Chrna1 (MGP_PahariEiJ_G0025113) #12	MGP_PahariEiJ_G0025114 #13	Atf2 (MGP_PahariEiJ_G0025115) #14	Atp5g3 (MGP_PahariEiJ_G0025116)	Lnpk (MGP_PahariEiJ_G0025117) #15	Evx2 (MGP_PahariEiJ_G0025118) #16	Hoxd13 (MGP_PahariEiJ_G0025119) #17	Hoxd12 (MGP_PahariEiJ_G0025120) #18	Hoxd11 (MGP_PahariEiJ_G0025121) #19	Hoxd10 (MGP_PahariEiJ_G0025122) #20	Hoxd9 (MGP_PahariEiJ_G0025123) #21	Hoxd8 (MGP_PahariEiJ_G0025124) #22	Hoxd3 (MGP_PahariEiJ_G0025125) #24	Hoxd4 (MGP_PahariEiJ_G0025126) #23	MGP_PahariEiJ_G0025127 #23	Hoxd1 (MGP_PahariEiJ_G0025128) #25	Mtx2 (MGP_PahariEiJ_G0025129) #26	Hnrnpa3 (MGP_PahariEiJ_G0025130) #27	Nfe2l2 (MGP_PahariEiJ_G0025131) #28	MGP_PahariEiJ_G0025132 #29	MGP_PahariEiJ_G0025133 #30	MGP_PahariEiJ_G0025134 #30	Pde11a (MGP_PahariEiJ_G0025135) #31	Cyct (MGP_PahariEiJ_G0025136)	Rbm45 (MGP_PahariEiJ_G0025137) #33	Osbpl6 (MGP_PahariEiJ_G0025138) #34	Prkra (MGP_PahariEiJ_G0025139)
Rat	MODERN SPECIES	13	Gpr155 (ENSRNOG00000018485) #10	Wipf1 (ENSRNOG00000018406) #11	Rbx1-ps2 (ENSRNOG00000067031)	Chrna1 (ENSRNOG00000018286) #12	Chn1 (ENSRNOG00000017939) #13	ENSRNOG00000068403	Atf2 (ENSRNOG00000001597) #14	Atp5mc3 (ENSRNOG00000001596)	Lnpk (ENSRNOG00000001593) #15	Evx2 (ENSRNOG00000001589) #16	Hoxd13 (ENSRNOG00000001588) #17	Hoxd12 (ENSRNOG00000001587) #18	Hoxd11 (ENSRNOG00000069591) #19	Hoxd10 (ENSRNOG00000001581) #20	Hoxd9 (ENSRNOG00000001580) #21	Hoxd8 (ENSRNOG00000071108) #22	Hoxd4 (ENSRNOG00000001578) #23	AABR07052559.1 (ENSRNOG00000053144)	Hoxd3 (ENSRNOG00000001577) #24	Hoxd1 (ENSRNOG00000001572) #25	Mtx2 (ENSRNOG00000001559) #26	Hnrnpa3 (ENSRNOG00000052968) #27	Nfe2l2 (ENSRNOG00000001548) #28	ENSRNOG00000066660	Agps (ENSRNOG00000001547) #29	Ttc30b (ENSRNOG00000059460) #30	Ttc30a1 (ENSRNOG00000052519) #30	Ttc30a (ENSRNOG00000069321) #30	Cyct (ENSRNOG00000024457) #31	Rbm45 (ENSRNOG00000010595) #33	Osbpl6 (ENSRNOG00000010812) #34
Upper Galilee mountains blind mole rat	MODERN SPECIES	1735	Cir1 (ENSNGAG00000023091) #8	Scrn3 (ENSNGAG00000008783) #9	Gpr155 (ENSNGAG00000019246) #10	ENSNGAG00000022478 #11	Chrna1 (ENSNGAG00000023534) #12	Chn1 (ENSNGAG00000021893) #13	Atf2 (ENSNGAG00000003870) #14	Atp5g3 (ENSNGAG00000004748)	Lnpk (ENSNGAG00000023466) #15	Evx2 (ENSNGAG00000023877) #16	Hoxd13 (ENSNGAG00000023727) #17	Hoxd12 (ENSNGAG00000023455) #18	Hoxd11 (ENSNGAG00000023438) #19	Hoxd10 (ENSNGAG00000023868) #20	Hoxd9 (ENSNGAG00000011105) #21	Hoxd8 (ENSNGAG00000011799) #22	Hoxd4 (ENSNGAG00000020270) #23	Hoxd3 (ENSNGAG00000021055) #24	Hoxd1 (ENSNGAG00000021714) #25	Mtx2 (ENSNGAG00000020555) #26	ENSNGAG00000021745 ##27	Nfe2l2 (ENSNGAG00000022809) #28	Agps (ENSNGAG00000020263) #29	ENSNGAG00000022555 #30	Pde11a (ENSNGAG00000023493) #31	Cyct (ENSNGAG00000023547)	ENSNGAG00000021016	Rbm45 (ENSNGAG00000023886) #33	Osbpl6 (ENSNGAG00000014527) #34	Prkra (ENSNGAG00000021816)	Pjvk (ENSNGAG00000022020) #35
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Suina	ANCESTRAL SPECIES	3	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a.e #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00390000010491.kb.a	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36	ENSGT00940000155850 #37
Chacoan peccary	MODERN SPECIES	88	SCRN3 (ENSCWAG00000015324) #9	GPR155 (ENSCWAG00000015434) #10	WIPF1 (ENSCWAG00000000086) #11	CHRNA1 (ENSCWAG00000000173) #12	CHN1 (ENSCWAG00000000417) #13	ATF2 (ENSCWAG00000000507) #14	ENSCWAG00000000620	LNPK (ENSCWAG00000000637) #15	ENSCWAG00000000677	EVX2 (ENSCWAG00000000686) #16	HOXD13 (ENSCWAG00000000704) #17	HOXD12 (ENSCWAG00000000716) #18	HOXD11 (ENSCWAG00000000728) #19	HOXD10 (ENSCWAG00000000737) #20	HOXD9 (ENSCWAG00000000750) #21	HOXD8 (ENSCWAG00000000766) #22	HOXD4 (ENSCWAG00000000799) #23	HOXD3 (ENSCWAG00000000815) #24	HOXD1 (ENSCWAG00000000831) #25	MTX2 (ENSCWAG00000000848) #26	HNRNPA3 (ENSCWAG00000000880) #27	NFE2L2 (ENSCWAG00000000916) #28	AGPS (ENSCWAG00000000957) #29	PDE11A (ENSCWAG00000001000) #31	ENSCWAG00000001084	RBM45 (ENSCWAG00000001104) #33	OSBPL6 (ENSCWAG00000001227) #34	PRKRA (ENSCWAG00000001459)	PJVK (ENSCWAG00000001480) #35	FKBP7 (ENSCWAG00000001502) #36	PLEKHA3 (ENSCWAG00000001517) #37
Pig	MODERN SPECIES	6	GPR155 (ENSSSCG00000015965) #10	ENSSSCG00000027348	CHRNA1 (ENSSSCG00000015969) #12	ENSSSCG00000022345 #13	ATF2 (ENSSSCG00000038076) #14	ATP5MC3 (ENSSSCG00000015973)	LNPK (ENSSSCG00000015976) #15	ENSSSCG00000039002	ENSSSCG00000053760	EVX2 (ENSSSCG00000023146) #16	HOXD13 (ENSSSCG00000057890) #17	HOXD12 (ENSSSCG00000015980) #18	HOXD11 (ENSSSCG00000034741) #19	HOXD10 (ENSSSCG00000015981) #20	HOXD9 (ENSSSCG00000015982) #21	HOXD8 (ENSSSCG00000040349) #22	HOXD4 (ENSSSCG00000015984) #23	HOXD3 (ENSSSCG00000015985) #24	HOXD1 (ENSSSCG00000015986) #25	MTX2 (ENSSSCG00000022222) #26	ENSSSCG00000015988 ##27	NFE2L2 (ENSSSCG00000015987) #28	AGPS (ENSSSCG00000023983) #29	PDE11A (ENSSSCG00000038903) #31	ENSSSCG00000047774	RBM45 (ENSSSCG00000015996) #33	OSBPL6 (ENSSSCG00000023133) #34	PRKRA (ENSSSCG00000038254)	PJVK (ENSSSCG00000015998) #35	FKBP7 (ENSSSCG00000015999) #36	PLEKHA3 (ENSSSCG00000049025) #37
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT00390000010116.fc.b #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Camelidae	ANCESTRAL SPECIES	16	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.b #30	ENSGT00940000162151 #31	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36	ENSGT00940000155850 #37	ENSGT01100000263532.A.a.a.a.b.c.a
Arabian camel	MODERN SPECIES	31	CIR1 (ENSCDRG00005001834) #8	SCRN3 (ENSCDRG00005001860) #9	GPR155 (ENSCDRG00005001897) #10	ENSCDRG00005001936 #11	CHRNA1 (ENSCDRG00005001973) #12	CHN1 (ENSCDRG00005002091) #13	ATF2 (ENSCDRG00005002159) #14	ATP5MC3 (ENSCDRG00005002307)	LNPK (ENSCDRG00005002325) #15	EVX2 (ENSCDRG00005002358) #16	HOXD13 (ENSCDRG00005002411) #17	HOXD12 (ENSCDRG00005002432) #18	HOXD11 (ENSCDRG00005002440) #19	HOXD10 (ENSCDRG00005002456) #20	HOXD9 (ENSCDRG00005002467) #21	HOXD8 (ENSCDRG00005002477) #22	HOXD4 (ENSCDRG00005002497) #23	HOXD3 (ENSCDRG00005002512) #24	MTX2 (ENSCDRG00005002532) #26	HNRNPA3 (ENSCDRG00005002567) #27	NFE2L2 (ENSCDRG00005002588) #28	AGPS (ENSCDRG00005002612) #29	ENSCDRG00005002654 #30	ENSCDRG00005002663 #30	PDE11A (ENSCDRG00005002676) #31	RBM45 (ENSCDRG00005002693) #33	OSBPL6 (ENSCDRG00005002764) #34	ENSCDRG00005002982	PRKRA (ENSCDRG00005002991)	PJVK (ENSCDRG00005003020) #35	FKBP7 (ENSCDRG00005003026) #36
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT00390000010116.fc.b #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Cetacea	ANCESTRAL SPECIES	14	ENSGT00730000111135.j #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00940000171387	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT00390000010116.fc.b #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##27	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT00390000010116.fc.b #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##27	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT00390000010116.fc.b #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618
Dolphin	MODERN SPECIES	804											LNPK (ENSTTRG00000013765) #15	EVX2 (ENSTTRG00000013768) #16	HOXD13 (ENSTTRG00000013771) #17	HOXD12 (ENSTTRG00000013772) #18	HOXD9 (ENSTTRG00000013773) #21	HOXD8 (ENSTTRG00000013777) #22	HOXD4 (ENSTTRG00000013778) #23	HOXD3 (ENSTTRG00000013779) #24
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00390000004153 #10	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000008142.t	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT00390000010116.fc.b #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Vaquita	MODERN SPECIES	18	ENSPSNG00000006580 #10	ENSPSNG00000006539	CHRNA1 (ENSPSNG00000006481) #12	CHN1 (ENSPSNG00000006315) #13	ATF2 (ENSPSNG00000006111) #14	ATP5MC3 (ENSPSNG00000006024)	ENSPSNG00000005869	ENSPSNG00000005846	LNPK (ENSPSNG00000005786) #15	EVX2 (ENSPSNG00000005734) #16	HOXD13 (ENSPSNG00000005715) #17	HOXD12 (ENSPSNG00000005695) #18	HOXD11 (ENSPSNG00000005666) #19	HOXD10 (ENSPSNG00000005654) #20	HOXD9 (ENSPSNG00000005639) #21	HOXD8 (ENSPSNG00000005602) #22	HOXD4 (ENSPSNG00000005556) #23	HOXD3 (ENSPSNG00000005539) #24	HOXD1 (ENSPSNG00000005524) #25	MTX2 (ENSPSNG00000005488) #26	ENSPSNG00000005439 ##27	NFE2L2 (ENSPSNG00000005384) #28	AGPS (ENSPSNG00000005315) #29	ENSPSNG00000005284 #30	ENSPSNG00000007902 #30	PDE11A (ENSPSNG00000007618) #31	ENSPSNG00000007564	RBM45 (ENSPSNG00000007527) #33	OSBPL6 (ENSPSNG00000007225) #34	PRKRA (ENSPSNG00000007030)	PJVK (ENSPSNG00000006966) #35
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00940000171387	ENSGT00390000004755.tb.a.a	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000008142.t	ENSGT00950000182834.A.a.a.t	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT00390000010116.fc.b #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Beluga whale	MODERN SPECIES	84	WIPF1 (ENSDLEG00000008289)	ENSDLEG00000008360	CHRNA1 (ENSDLEG00000008433) #12	CHN1 (ENSDLEG00000008654) #13	ATF2 (ENSDLEG00000008726) #14	ATP5G3 (ENSDLEG00000008800)	ENSDLEG00000008837	ENSDLEG00000008854	LNPK (ENSDLEG00000008885) #15	EVX2 (ENSDLEG00000008943) #16	HOXD13 (ENSDLEG00000009014) #17	HOXD12 (ENSDLEG00000009038) #18	ENSDLEG00000009052 #19	HOXD10 (ENSDLEG00000009076) #20	HOXD9 (ENSDLEG00000009091) #21	HOXD8 (ENSDLEG00000009104) #22	HOXD4 (ENSDLEG00000009166) #23	HOXD3 (ENSDLEG00000009171) #24	HOXD1 (ENSDLEG00000009181) #25	MTX2 (ENSDLEG00000009199) #26	ENSDLEG00000009227 ##27	NFE2L2 (ENSDLEG00000009266) #28	AGPS (ENSDLEG00000009335) #29	ENSDLEG00000009463 #30	ENSDLEG00000009469 #30	ENSDLEG00000009481 #31	ENSDLEG00000009493	RBM45 (ENSDLEG00000009507) #33	OSBPL6 (ENSDLEG00000009570) #34	PRKRA (ENSDLEG00000009768)	PJVK (ENSDLEG00000009801) #35
Narwhal	MODERN SPECIES	302	ENSMMNG00015008159	ENSMMNG00015008133	CHRNA1 (ENSMMNG00015008057) #12	CHN1 (ENSMMNG00015007913) #13	ATF2 (ENSMMNG00015007777) #14	ATP5MC3 (ENSMMNG00015007729)	ENSMMNG00015007699	ENSMMNG00015007684	LNPK (ENSMMNG00015007647) #15	EVX2 (ENSMMNG00015007622) #16	HOXD13 (ENSMMNG00015007609) #17	HOXD12 (ENSMMNG00015007598) #18	ENSMMNG00015007589 #19	HOXD10 (ENSMMNG00015007571) #20	HOXD9 (ENSMMNG00015007556) #21	HOXD8 (ENSMMNG00015007526) #22	HOXD4 (ENSMMNG00015007477) #23	HOXD3 (ENSMMNG00015007460) #24	HOXD1 (ENSMMNG00015007440) #25	MTX2 (ENSMMNG00015007394) #26	ENSMMNG00015007339 ##27	NFE2L2 (ENSMMNG00015007306) #28	AGPS (ENSMMNG00015007255) #29	ENSMMNG00015007232 #30	ENSMMNG00015007201 #30	ENSMMNG00015014296	PDE11A (ENSMMNG00015014260) #31	ENSMMNG00015014238	RBM45 (ENSMMNG00015014220) #33	OSBPL6 (ENSMMNG00015014111) #34	PRKRA (ENSMMNG00015014019)
Sperm whale	MODERN SPECIES	11	SCRN3 (ENSPCTG00005005779) #9	GPR155 (ENSPCTG00005005831) #10	WIPF1 (ENSPCTG00005005895)	ENSPCTG00005005929	CHRNA1 (ENSPCTG00005005965) #12	CHN1 (ENSPCTG00005006263) #13	ATF2 (ENSPCTG00005007004) #14	ATP5MC3 (ENSPCTG00005007202)	LNPK (ENSPCTG00005007293) #15	EVX2 (ENSPCTG00005007330) #16	HOXD13 (ENSPCTG00005007354) #17	HOXD12 (ENSPCTG00005007367) #18	ENSPCTG00005007381 #19	HOXD10 (ENSPCTG00005007393) #20	HOXD9 (ENSPCTG00005007399) #21	HOXD8 (ENSPCTG00005007418) #22	HOXD4 (ENSPCTG00005007493) #23	HOXD3 (ENSPCTG00005007508) #24	HOXD1 (ENSPCTG00005007516) #25	MTX2 (ENSPCTG00005007528) #26	ENSPCTG00005003466 ##27	NFE2L2 (ENSPCTG00005003486) #28	AGPS (ENSPCTG00005003530) #29	ENSPCTG00005003590 #30	ENSPCTG00005003599 #30	PDE11A (ENSPCTG00005003616) #31	ENSPCTG00005003686	RBM45 (ENSPCTG00005003694) #33	OSBPL6 (ENSPCTG00005003757) #34	PJVK (ENSPCTG00005003934) #35	PRKRA (ENSPCTG00005003951)
Blue whale	MODERN SPECIES	18	SCRN3 (ENSBMSG00010005522) #9	GPR155 (ENSBMSG00010005540) #10	ENSBMSG00010005563	ENSBMSG00010005581	CHRNA1 (ENSBMSG00010005615) #12	CHN1 (ENSBMSG00010005726) #13	ATF2 (ENSBMSG00010005883) #14	ATP5MC3 (ENSBMSG00010005937)	LNPK (ENSBMSG00010005955) #15	EVX2 (ENSBMSG00010005974) #16	HOXD13 (ENSBMSG00010005980) #17	HOXD12 (ENSBMSG00010005987) #18	HOXD11 (ENSBMSG00010005993) #19	HOXD10 (ENSBMSG00010006002) #20	HOXD9 (ENSBMSG00010006014) #21	HOXD8 (ENSBMSG00010006022) #22	HOXD4 (ENSBMSG00010006036) #23	HOXD3 (ENSBMSG00010006046) #24	HOXD1 (ENSBMSG00010006055) #25	MTX2 (ENSBMSG00010006100) #26	ENSBMSG00010006149 ##27	NFE2L2 (ENSBMSG00010006157) #28	AGPS (ENSBMSG00010006175) #29	ENSBMSG00010006193 #30	ENSBMSG00010006199 #30	PDE11A (ENSBMSG00010006216) #31	ENSBMSG00010006255	ENSBMSG00010006266	RBM45 (ENSBMSG00010006279) #33	OSBPL6 (ENSBMSG00010006347) #34	PRKRA (ENSBMSG00010006442)
Pecora	ANCESTRAL SPECIES	24	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT00390000010116.fc.b #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Percora_a	ANCESTRAL SPECIES	5	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT00390000010116.fc.b #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Bovidae	ANCESTRAL SPECIES	8	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT00390000010116.fc.b #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Bovinae	ANCESTRAL SPECIES	5	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT00390000010116.fc.b #30	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618
Bos	ANCESTRAL SPECIES	6	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #27	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #30	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33
Bos_a	ANCESTRAL SPECIES	4	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00940000153299.c.a.b.u.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618
Wild yak	MODERN SPECIES	2654										LNPK (ENSBMUG00000015713) #15	ENSBMUG00000015669	ENSBMUG00000015650	HOXD13 (ENSBMUG00000015639) #17	HOXD12 (ENSBMUG00000015618) #18	HOXD10 (ENSBMUG00000015601) #20	ENSBMUG00000015587 #22	HOXD3 (ENSBMUG00000015572) #24	ENSBMUG00000015556
Domestic yak	MODERN SPECIES	11	GPR155 (ENSBGRG00000014360) #10	ENSBGRG00000014674	ENSBGRG00000014699	CHRNA1 (ENSBGRG00000014839) #12	CHN1 (ENSBGRG00000015101) #13	ATF2 (ENSBGRG00000015648) #14	ATP5MC3 (ENSBGRG00000016024)	ENSBGRG00000016132	LNPK (ENSBGRG00000016182) #15	EVX2 (ENSBGRG00000016780) #16	HOXD13 (ENSBGRG00000016836) #17	HOXD12 (ENSBGRG00000016890) #18	HOXD11 (ENSBGRG00000016923) #19	HOXD10 (ENSBGRG00000016979) #20	HOXD9 (ENSBGRG00000017014) #21	HOXD8 (ENSBGRG00000017045) #22	ENSBGRG00000017167 #23	HOXD3 (ENSBGRG00000017255) #24	HOXD1 (ENSBGRG00000017303) #25	MTX2 (ENSBGRG00000017363) #26	ENSBGRG00000000202 #27	NFE2L2 (ENSBGRG00000000213) #28	AGPS (ENSBGRG00000000237) #29	ENSBGRG00000000256 #30	ENSBGRG00000000264	ENSBGRG00000000270 #30	PDE11A (ENSBGRG00000000288) #31	ENSBGRG00000000317	ENSBGRG00000000319	ENSBGRG00000000328	RBM45 (ENSBGRG00000000341) #33
Bos_b	ANCESTRAL SPECIES	3	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT01030000234916.g.b	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.b #30	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34
Cow	MODERN SPECIES	11	WIPF1 (ENSBTAG00000001585)	CHRNA1 (ENSBTAG00000018253) #12	CHN1 (ENSBTAG00000008028) #13	ATF2 (ENSBTAG00000002295) #14	ATP5MC3 (ENSBTAG00000002944)	ENSBTAG00000031711	LNPK (ENSBTAG00000018061) #15	ENSBTAG00000050237	ENSBTAG00000002009	EVX2 (ENSBTAG00000049537) #16	HOXD13 (ENSBTAG00000004313) #17	HOXD12 (ENSBTAG00000004314) #18	HOXD11 (ENSBTAG00000033330) #19	HOXD10 (ENSBTAG00000016030) #20	HOXD9 (ENSBTAG00000016033) #21	HOXD8 (ENSBTAG00000049845) #22	HOXD4 (ENSBTAG00000039581) #23	HOXD3 (ENSBTAG00000004835) #24	HOXD1 (ENSBTAG00000015840) #25	MTX2 (ENSBTAG00000006693) #26	HNRNPA3 (ENSBTAG00000021580) #27	NFE2L2 (ENSBTAG00000019255) #28	AGPS (ENSBTAG00000009897) #29	TTC30B (ENSBTAG00000027696) #30	TTC30A (ENSBTAG00000027694) #30	ENSBTAG00000049860	PDE11A (ENSBTAG00000016396) #31	CYCT (ENSBTAG00000039522)	RBM45 (ENSBTAG00000006168) #33	OSBPL6 (ENSBTAG00000014405) #34	PRKRA (ENSBTAG00000001096)
Hybrid Bos Indicus	MODERN SPECIES	11	ENSBIXG00005002196	CHRNA1 (ENSBIXG00005028981) #12	CHN1 (ENSBIXG00005001962) #13	ATF2 (ENSBIXG00005001719) #14	ATP5MC3 (ENSBIXG00005029222)	ENSBIXG00005029239	LNPK (ENSBIXG00005005282) #15	ENSBIXG00005029245	ENSBIXG00005029246	EVX2 (ENSBIXG00005005288) #16	HOXD13 (ENSBIXG00005001519) #17	HOXD12 (ENSBIXG00005001517) #18	HOXD11 (ENSBIXG00005001515) #19	HOXD10 (ENSBIXG00005005289) #20	HOXD9 (ENSBIXG00005030437) #21	HOXD8 (ENSBIXG00005030431) #22	HOXD3 (ENSBIXG00005030419) #24	HOXD1 (ENSBIXG00005030413) #25	MTX2 (ENSBIXG00005030400) #26	ENSBIXG00005030356	ENSBIXG00005030352	HNRNPA3 (ENSBIXG00005030333) #27	NFE2L2 (ENSBIXG00005030317) #28	AGPS (ENSBIXG00005030278) #29	ENSBIXG00005030257 #30	ENSBIXG00005030245	ENSBIXG00005030242 #30	PDE11A (ENSBIXG00005030175) #31	ENSBIXG00005030117	RBM45 (ENSBIXG00005030103) #33	OSBPL6 (ENSBIXG00005029906) #34
American bison	MODERN SPECIES	3320	SCRN3 (ENSBBBG00000017011) #9	GPR155 (ENSBBBG00000017134) #10	WIPF1 (ENSBBBG00000017196) #11	CHRNA1 (ENSBBBG00000017301) #12	CHN1 (ENSBBBG00000004302) #13	ATF2 (ENSBBBG00000017564) #14	ATP5MC3 (ENSBBBG00000017586)	ENSBBBG00000017593	LNPK (ENSBBBG00000017627) #15	ENSBBBG00000017634	ENSBBBG00000017638	HOXD13 (ENSBBBG00000017641) #17	HOXD12 (ENSBBBG00000017645) #18	HOXD10 (ENSBBBG00000006962) #20	HOXD9 (ENSBBBG00000017650) #21	HOXD8 (ENSBBBG00000017657) #22	HOXD4 (ENSBBBG00000017669) #23	HOXD3 (ENSBBBG00000017682) #24	HOXD1 (ENSBBBG00000017690) #25	ENSBBBG00000004376	ENSBBBG00000017700	MTX2 (ENSBBBG00000017733) #26	ENSBBBG00000007269 #27	NFE2L2 (ENSBBBG00000017780) #28	AGPS (ENSBBBG00000017817) #29	ENSBBBG00000007701 #30	ENSBBBG00000017832 #30	ENSBBBG00000017839	PDE11A (ENSBBBG00000017894) #31	ENSBBBG00000017912	RBM45 (ENSBBBG00000004406) #33
Caprinae	ANCESTRAL SPECIES	5	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT01010000228762	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.fc.a #30	ENSGT00390000010116.fc.b #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020001367	CHRNA1 (ENSOARG00020001273) #12	ENSOARG00020001229	ENSOARG00020001216	CHN1 (ENSOARG00020000831) #13	ATF2 (ENSOARG00020000583) #14	ATP5MC3 (ENSOARG00020000538)	LNPK (ENSOARG00020000416) #15	ENSOARG00020000394	EVX2 (ENSOARG00020000381) #16	HOXD13 (ENSOARG00020000373) #17	HOXD12 (ENSOARG00020000357) #18	hoxd11 (ENSOARG00020000346) #19	HOXD10 (ENSOARG00020000330) #20	HOXD9 (ENSOARG00020000321) #21	HOXD8 (ENSOARG00020000297) #22	HOXD4 (ENSOARG00020000275) #23	HOXD3 (ENSOARG00020000257) #24	HOXD1 (ENSOARG00020000237) #25	MTX2 (ENSOARG00020000188) #26	HNRNPA3 (ENSOARG00020000123) #27	NFE2L2 (ENSOARG00020022726) #28	AGPS (ENSOARG00020022410) #29	ENSOARG00020022373 #30	ENSOARG00020022364 #30	PDE11A (ENSOARG00020022115) #31	ENSOARG00020022078	RBM45 (ENSOARG00020022028) #33	OSBPL6 (ENSOARG00020020986) #34	PRKRA (ENSOARG00020020855)	PJVK (ENSOARG00020020753) #35
Goat	MODERN SPECIES	11	ENSCHIG00000009043	CHRNA1 (ENSCHIG00000018272) #12	CHN1 (ENSCHIG00000017514) #13	ENSCHIG00000012635	ATF2 (ENSCHIG00000011446) #14	ENSCHIG00000018041	LNPK (ENSCHIG00000012313) #15	ENSCHIG00000025787	ENSCHIG00000004992	EVX2 (ENSCHIG00000026644) #16	HOXD13 (ENSCHIG00000009994) #17	HOXD12 (ENSCHIG00000014734) #18	HOXD11 (ENSCHIG00000026087) #19	HOXD10 (ENSCHIG00000011771) #20	HOXD9 (ENSCHIG00000023245) #21	HOXD8 (ENSCHIG00000013371) #22	HOXD4 (ENSCHIG00000019702) #23	HOXD3 (ENSCHIG00000011624) #24	HOXD1 (ENSCHIG00000017515) #25	MTX2 (ENSCHIG00000008892) #26	ENSCHIG00000015430 #27	NFE2L2 (ENSCHIG00000026055) #28	AGPS (ENSCHIG00000015256) #29	ENSCHIG00000011750 #30	ENSCHIG00000011716 #30	PDE11A (ENSCHIG00000016852) #31	ENSCHIG00000026156	RBM45 (ENSCHIG00000010687) #33	ENSCHIG00000017164	OSBPL6 (ENSCHIG00000008898) #34	PRKRA (ENSCHIG00000015333)
Siberian musk deer	MODERN SPECIES	342					ENSMMSG00000008116	ENSMMSG00000008102 ##13	ATF2 (ENSMMSG00000007713) #14	ENSMMSG00000007642	LNPK (ENSMMSG00000007582) #15	EVX2 (ENSMMSG00000007555) #16	HOXD13 (ENSMMSG00000007541) #17	HOXD12 (ENSMMSG00000007530) #18	HOXD11 (ENSMMSG00000007513) #19	HOXD10 (ENSMMSG00000007495) #20	HOXD9 (ENSMMSG00000007480) #21	HOXD8 (ENSMMSG00000007407) #22	HOXD4 (ENSMMSG00000007365) #23	HOXD3 (ENSMMSG00000007343) #24	HOXD1 (ENSMMSG00000007322) #25	MTX2 (ENSMMSG00000007226) #26	ENSMMSG00000007068 ##27	NFE2L2 (ENSMMSG00000006992) #28	ENSMMSG00000006963	AGPS (ENSMMSG00000006894) #29	ENSMMSG00000006854 #30	ENSMMSG00000006819 #30	PDE11A (ENSMMSG00000006654) #31	ENSMMSG00000006624	RBM45 (ENSMMSG00000006596) #33	OSBPL6 (ENSMMSG00000006219) #34
Yarkand deer	MODERN SPECIES	26	GPR155 (ENSCHYG00000018083) #10	ENSCHYG00000017877	CHRNA1 (ENSCHYG00000017619) #12	ENSCHYG00000017575	CHN1 (ENSCHYG00000017015) #13	ATF2 (ENSCHYG00000016575) #14	ATP5MC3 (ENSCHYG00000016464)	ENSCHYG00000016417	ENSCHYG00000016391	LNPK (ENSCHYG00000016125) #15	HOXD13 (ENSCHYG00000015985) #17	HOXD12 (ENSCHYG00000015954) #18	ENSCHYG00000015846	HOXD10 (ENSCHYG00000015831) #20	HOXD9 (ENSCHYG00000015808) #21	HOXD8 (ENSCHYG00000015741) #22	HOXD4 (ENSCHYG00000015683) #23	HOXD3 (ENSCHYG00000015650) #24	HOXD1 (ENSCHYG00000015562) #25	MTX2 (ENSCHYG00000015392) #26	ENSCHYG00000015305	ENSCHYG00000015038 #27	NFE2L2 (ENSCHYG00000024719) #28	AGPS (ENSCHYG00000024578) #29	ENSCHYG00000024559 #30	ENSCHYG00000024550 #30	PDE11A (ENSCHYG00000024466) #31	ENSCHYG00000024445	ENSCHYG00000024431	RBM45 (ENSCHYG00000024364) #33	OSBPL6 (ENSCHYG00000023926) #34
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Carnivora	ANCESTRAL SPECIES	17	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000147479.a.b	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Felidae	ANCESTRAL SPECIES	15	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000147479.a.b	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.vb #30	ENSGT00390000010116.wb #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Panthera	ANCESTRAL SPECIES	9	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000147479.a.b	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.vb #30	ENSGT00390000010116.wb #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Tiger	MODERN SPECIES	43	SP3 (ENSPTIG00000014294)	ENSPTIG00000011872	ENSPTIG00000009967	CIR1 (ENSPTIG00000008708) #8	SCRN3 (ENSPTIG00000003437) #9	GPR155 (ENSPTIG00000018965) #10	WIPF1 (ENSPTIG00000016801) #11	CHRNA1 (ENSPTIG00000012090) #12	CHN1 (ENSPTIG00000006887) #13	ATF2 (ENSPTIG00000017517) #14	ATP5MC3 (ENSPTIG00000016881)	LNPK (ENSPTIG00000016532) #15	HOXD13 (ENSPTIG00000016212) #17	HOXD10 (ENSPTIG00000015771) #20	ENSPTIG00000006835 #21	ENSPTIG00000015581 #22	HOXD4 (ENSPTIG00000015199) #23	ENSPTIG00000013485	MTX2 (ENSPTIG00000011503) #26	HNRNPA3 (ENSPTIG00000008598) #27	NFE2L2 (ENSPTIG00000007874) #28
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000147479.a.b	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.vb #30	ENSGT00390000010116.wb #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
lion	MODERN SPECIES	8	GPR155 (ENSPLOG00000022420) #10	ENSPLOG00000022404	ENSPLOG00000022399	WIPF1 (ENSPLOG00000022385) #11	CHRNA1 (ENSPLOG00000022353) #12	CHN1 (ENSPLOG00000022311) #13	ATF2 (ENSPLOG00000022276) #14	ATP5MC3 (ENSPLOG00000022249)	LNPK (ENSPLOG00000022229) #15	EVX2 (ENSPLOG00000022219) #16	HOXD13 (ENSPLOG00000022213) #17	HOXD12 (ENSPLOG00000022207) #18	HOXD11 (ENSPLOG00000022202) #19	HOXD10 (ENSPLOG00000022198) #20	HOXD9 (ENSPLOG00000022195) #21	HOXD8 (ENSPLOG00000022192) #22	HOXD4 (ENSPLOG00000022180) #23	HOXD3 (ENSPLOG00000022176) #24	HOXD1 (ENSPLOG00000022171) #25	MTX2 (ENSPLOG00000022148) #26	ENSPLOG00000022134 #27	NFE2L2 (ENSPLOG00000022123) #28	AGPS (ENSPLOG00000022055) #29	ENSPLOG00000022046 #30	ENSPLOG00000022045 #30	PDE11A (ENSPLOG00000022012) #31	RBM45 (ENSPLOG00000021986) #33	OSBPL6 (ENSPLOG00000021601) #34	PRKRA (ENSPLOG00000021458)	PJVK (ENSPLOG00000021374) #35	FKBP7 (ENSPLOG00000021347) #36
leopard	MODERN SPECIES	1	SCRN3 (ENSPPRG00000003477) #9	GPR155 (ENSPPRG00000003324) #10	ENSPPRG00000002818	WIPF1 (ENSPPRG00000002779) #11	CHRNA1 (ENSPPRG00000002357) #12	CHN1 (ENSPPRG00000001854) #13	ATF2 (ENSPPRG00000001271) #14	ATP5MC3 (ENSPPRG00000000490)	LNPK (ENSPPRG00000000436) #15	EVX2 (ENSPPRG00000000389) #16	HOXD13 (ENSPPRG00000000349) #17	HOXD12 (ENSPPRG00000000300) #18	HOXD11 (ENSPPRG00000000168) #19	HOXD10 (ENSPPRG00000000139) #20	HOXD9 (ENSPPRG00000000084) #21	HOXD8 (ENSPPRG00000022672) #22	HOXD4 (ENSPPRG00000022845) #23	HOXD3 (ENSPPRG00000022847) #24	HOXD1 (ENSPPRG00000023009) #25	MTX2 (ENSPPRG00000022475) #26	ENSPPRG00000022322 #27	NFE2L2 (ENSPPRG00000020872) #28	AGPS (ENSPPRG00000020328) #29	ENSPPRG00000021116 #30	ENSPPRG00000021101 #30	PDE11A (ENSPPRG00000019135) #31	ENSPPRG00000017216	RBM45 (ENSPPRG00000017073) #33	OSBPL6 (ENSPPRG00000015447) #34	ENSPPRG00000011982	PJVK (ENSPPRG00000011834) #35
Cat	MODERN SPECIES	239	SCRN3 (ENSFCAG00000022042) #9	GPR155 (ENSFCAG00000000439) #10	ENSFCAG00000034843	WIPF1 (ENSFCAG00000014400) #11	CHRNA1 (ENSFCAG00000014103) #12	CHN1 (ENSFCAG00000039893) #13	ATF2 (ENSFCAG00000027595) #14	ATP5MC3 (ENSFCAG00000012719)	LNPK (ENSFCAG00000033171) #15	EVX2 (ENSFCAG00000023892) #16	HOXD13 (ENSFCAG00000030694) #17	HOXD12 (ENSFCAG00000044671) #18	HOXD11 (ENSFCAG00000030594) #19	HOXD10 (ENSFCAG00000006264) #20	HOXD9 (ENSFCAG00000035038) #21	HOXD8 (ENSFCAG00000034788) #22	HOXD4 (ENSFCAG00000045772) #23	HOXD3 (ENSFCAG00000022371) #24	HOXD1 (ENSFCAG00000042171) #25	MTX2 (ENSFCAG00000030099) #26	HNRNPA3 (ENSFCAG00000012146) #27	NFE2L2 (ENSFCAG00000012147) #28	AGPS (ENSFCAG00000022316) #29	ENSFCAG00000048732 #30	ENSFCAG00000049217 #30	PDE11A (ENSFCAG00000022207) #31	RBM45 (ENSFCAG00000018793) #33	OSBPL6 (ENSFCAG00000012535) #34	PRKRA (ENSFCAG00000031042)	PJVK (ENSFCAG00000018124) #35	FKBP7 (ENSFCAG00000012540) #36
Caniformia	ANCESTRAL SPECIES	14	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000147479.a.b	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000147479.a.b	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Ursidae	ANCESTRAL SPECIES	7	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000147479.a.b	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a.m.b	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.b ##27	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Ursus	ANCESTRAL SPECIES	4	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000147479.a.b	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a.m.b	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.b ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
American black bear	MODERN SPECIES	3042										EVX2 (ENSUAMG00000025680) #16	HOXD13 (ENSUAMG00000025683) #17	HOXD12 (ENSUAMG00000025684) #18	HOXD11 (ENSUAMG00000025686) #19	HOXD10 (ENSUAMG00000025688) #20	HOXD9 (ENSUAMG00000025690) #21	HOXD8 (ENSUAMG00000025693) #22	HOXD4 (ENSUAMG00000025697) #23	HOXD3 (ENSUAMG00000025698) #24	HOXD1 (ENSUAMG00000025700) #25
Polar bear	MODERN SPECIES	142	SP3 (ENSUMAG00000015395)	OLA1 (ENSUMAG00000015410)	ENSUMAG00000015413	CIR1 (ENSUMAG00000015415) #8	SCRN3 (ENSUMAG00000015422) #9	GPR155 (ENSUMAG00000015425) #10	ENSUMAG00000015461	ENSUMAG00000015473	CHRNA1 (ENSUMAG00000015480) #12	CHN1 (ENSUMAG00000015511) #13	ATF2 (ENSUMAG00000015564) #14	ATP5MC3 (ENSUMAG00000015579)	LNPK (ENSUMAG00000015613) #15	ENSUMAG00000015649 #19	HOXD10 (ENSUMAG00000015650) #20	ENSUMAG00000015653 #22	HOXD4 (ENSUMAG00000015658) #23	MTX2 (ENSUMAG00000015662) #26	ENSUMAG00000015686 ##27	NFE2L2 (ENSUMAG00000015689) #28	AGPS (ENSUMAG00000015781) #29	ENSUMAG00000016390 #30	PDE11A (ENSUMAG00000016414) #31	RBM45 (ENSUMAG00000016503) #33	OSBPL6 (ENSUMAG00000016519) #34	PRKRA (ENSUMAG00000016566)	PJVK (ENSUMAG00000016572) #35	FKBP7 (ENSUMAG00000016577) #36	PLEKHA3 (ENSUMAG00000016580) #37	ENSUMAG00000016583	ENSUMAG00000016602
Giant Panda	MODERN SPECIES	11	SCRN3 (ENSAMEG00000012230) #9	GPR155 (ENSAMEG00000012251) #10	ENSAMEG00000027164	WIPF1 (ENSAMEG00000012269) #11	CHRNA1 (ENSAMEG00000012277) #12	CHN1 (ENSAMEG00000012304) #13	ATF2 (ENSAMEG00000012333) #14	ATP5MC3 (ENSAMEG00000012367)	LNPK (ENSAMEG00000001869) #15	EVX2 (ENSAMEG00000001868) #16	HOXD13 (ENSAMEG00000001865) #17	HOXD12 (ENSAMEG00000023609) #18	ENSAMEG00000025193 #19	HOXD10 (ENSAMEG00000001849) #20	HOXD9 (ENSAMEG00000029987) #21	HOXD8 (ENSAMEG00000023565) #22	HOXD4 (ENSAMEG00000025663) #23	HOXD3 (ENSAMEG00000026957) #24	HOXD1 (ENSAMEG00000028345) #25	MTX2 (ENSAMEG00000001799) #26	ENSAMEG00000019906	HNRNPA3 (ENSAMEG00000011920) #27	NFE2L2 (ENSAMEG00000011937) #28	AGPS (ENSAMEG00000011950) #29	PDE11A (ENSAMEG00000000902) #31	ENSAMEG00000023664	RBM45 (ENSAMEG00000000896) #33	OSBPL6 (ENSAMEG00000000825) #34	PRKRA (ENSAMEG00000000803)	PJVK (ENSAMEG00000000801) #35	FKBP7 (ENSAMEG00000027885) #36
Mustelinae	ANCESTRAL SPECIES	21	ENSGT00570000080031	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
American mink	MODERN SPECIES	222									LNPK (ENSNVIG00000007208) #15	EVX2 (ENSNVIG00000007198) #16	HOXD13 (ENSNVIG00000007186) #17	HOXD12 (ENSNVIG00000007175) #18	ENSNVIG00000007170 #19	HOXD10 (ENSNVIG00000007162) #20	HOXD9 (ENSNVIG00000007158) #21	ENSNVIG00000007149 #22	HOXD4 (ENSNVIG00000007138) #23	HOXD3 (ENSNVIG00000007128) #24	HOXD1 (ENSNVIG00000007113) #25	MTX2 (ENSNVIG00000007075) #26	HNRNPA3 (ENSNVIG00000007022) #27	NFE2L2 (ENSNVIG00000006995) #28	AGPS (ENSNVIG00000006950) #29	ENSNVIG00000006929	PDE11A (ENSNVIG00000006854) #31	ENSNVIG00000006839	RBM45 (ENSNVIG00000006823) #33	OSBPL6 (ENSNVIG00000006388) #34	PRKRA (ENSNVIG00000006320)	PJVK (ENSNVIG00000006274) #35	FKBP7 (ENSNVIG00000006271) #36
Ferret	MODERN SPECIES	359	ENSMPUG00000013943 #8	SCRN3 (ENSMPUG00000013961) #9	GPR155 (ENSMPUG00000013963) #10	ENSMPUG00000013967	CHRNA1 (ENSMPUG00000013974) #12	CHN1 (ENSMPUG00000013977) #13	ATF2 (ENSMPUG00000013983) #14	ATP5MC3 (ENSMPUG00000013986)	LNPK (ENSMPUG00000014007) #15	EVX2 (ENSMPUG00000014012) #16	HOXD13 (ENSMPUG00000014022) #17	HOXD12 (ENSMPUG00000014025) #18	HOXD11 (ENSMPUG00000014029) #19	HOXD10 (ENSMPUG00000014049) #20	HOXD9 (ENSMPUG00000014053) #21	ENSMPUG00000014060 #22	ENSMPUG00000014067	HOXD4 (ENSMPUG00000014070) #23	HOXD3 (ENSMPUG00000014072) #24	ENSMPUG00000014080	HOXD1 (ENSMPUG00000014084) #25	ENSMPUG00000014088	MTX2 (ENSMPUG00000014094) #26	ENSMPUG00000014101	ENSMPUG00000014103 ##27	ENSMPUG00000014168 #28	ENSMPUG00000014172	AGPS (ENSMPUG00000014173) #29
Canidae	ANCESTRAL SPECIES	45	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000147479.a.b.b	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a.g.b #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a.i	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.tb #30	ENSGT00390000010116.ub #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Canis_lupus	ANCESTRAL SPECIES	39	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000147479.a.b.b	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a.g.b #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a.i	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116.tb #30	ENSGT00390000010116.ub #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35
Dingo	MODERN SPECIES	339	WIPF1 (ENSCAFG00020006074) #11	ENSCAFG00020006077 #11	CHRNA1 (ENSCAFG00020006081) #12	ENSCAFG00020006110 #13	ENSCAFG00020006118 #13	ATF2 (ENSCAFG00020006131) #14	ENSCAFG00020006151	ENSCAFG00020006176	LNPK (ENSCAFG00020006192) #15	EVX2 (ENSCAFG00020006206) #16	HOXD13 (ENSCAFG00020006212) #17	HOXD12 (ENSCAFG00020006216) #18	HOXD9 (ENSCAFG00020006227) #21	HOXD11 (ENSCAFG00020006229) #19	HOXD10 (ENSCAFG00020006239) #20	HOXD8 (ENSCAFG00020006244) #22	HOXD4 (ENSCAFG00020006256) #23	HOXD3 (ENSCAFG00020006263) #24	HOXD1 (ENSCAFG00020006270) #25	MTX2 (ENSCAFG00020006273) #26	ENSCAFG00020006299 ##27	NFE2L2 (ENSCAFG00020006313) #28	AGPS (ENSCAFG00020006351) #29	ENSCAFG00020006961 #30	ENSCAFG00020006963 #30	PDE11A (ENSCAFG00020006966) #31	RBM45 (ENSCAFG00020007013) #33	OSBPL6 (ENSCAFG00020007025) #34	ENSCAFG00020007071	PJVK (ENSCAFG00020007088) #35	FKBP7 (ENSCAFG00020007095) #36
Red fox	MODERN SPECIES	15	SCRN3 (ENSVVUG00000012946) #9	GPR155 (ENSVVUG00000012912) #10	ENSVVUG00000012900	WIPF1 (ENSVVUG00000012885) #11	CHRNA1 (ENSVVUG00000012830) #12	CHN1 (ENSVVUG00000012819) #13	ATF2 (ENSVVUG00000012774) #14	ATP5MC3 (ENSVVUG00000012759)	LNPK (ENSVVUG00000012737) #15	EVX2 (ENSVVUG00000012735) #16	HOXD13 (ENSVVUG00000012734) #17	HOXD12 (ENSVVUG00000012731) #18	ENSVVUG00000012726 #19	HOXD10 (ENSVVUG00000012722) #20	ENSVVUG00000012717 #21	HOXD8 (ENSVVUG00000012714) #22	HOXD3 (ENSVVUG00000012700) #24	ENSVVUG00000012694	ENSVVUG00000012682 #26	ENSVVUG00000012651 ##27	NFE2L2 (ENSVVUG00000012641) #28	ENSVVUG00000012637	ENSVVUG00000012634 #30	AGPS (ENSVVUG00000010164) #29	ENSVVUG00000010109 #30	PDE11A (ENSVVUG00000010094) #31	RBM45 (ENSVVUG00000010078) #33	OSBPL6 (ENSVVUG00000010039) #34	PRKRA (ENSVVUG00000010032)	PJVK (ENSVVUG00000010029) #35	FKBP7 (ENSVVUG00000010027) #36
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00730000111135 #8	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.a ##27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Greater horseshoe bat	MODERN SPECIES	26	CIR1 (ENSRFEG00010000863) #8	SCRN3 (ENSRFEG00010000835) #9	GPR155 (ENSRFEG00010000805) #10	WIPF1 (ENSRFEG00010000762) #11	CHRNA1 (ENSRFEG00010000686) #12	CHN1 (ENSRFEG00010000595) #13	ATF2 (ENSRFEG00010000479) #14	ENSRFEG00010000353	LNPK (ENSRFEG00010000270) #15	EVX2 (ENSRFEG00010000230) #16	HOXD13 (ENSRFEG00010022173) #17	HOXD12 (ENSRFEG00010022172) #18	HOXD11 (ENSRFEG00010022171) #19	HOXD10 (ENSRFEG00010022170) #20	HOXD9 (ENSRFEG00010022169) #21	HOXD8 (ENSRFEG00010022168) #22	HOXD4 (ENSRFEG00010022166) #23	HOXD3 (ENSRFEG00010022165) #24	HOXD1 (ENSRFEG00010022164) #25	MTX2 (ENSRFEG00010022163) #26	ENSRFEG00010022161 ##27	NFE2L2 (ENSRFEG00010022160) #28	ENSRFEG00010022158 #29	ENSRFEG00010022157 #30	ENSRFEG00010022156 #30	PDE11A (ENSRFEG00010022154) #31	ENSRFEG00010022153	RBM45 (ENSRFEG00010022152) #33	OSBPL6 (ENSRFEG00010022151) #34	PRKRA (ENSRFEG00010022150)	DFNB59 (ENSRFEG00010022149) #35
Microbat	MODERN SPECIES	942	CIR1 (ENSMLUG00000013807) #8	SCRN3 (ENSMLUG00000013823) #9	GPR155 (ENSMLUG00000013828) #10	WIPF1 (ENSMLUG00000022385) #11	CHRNA1 (ENSMLUG00000015698) #12	CHN1 (ENSMLUG00000015709) #13	ATF2 (ENSMLUG00000015718) #14	ENSMLUG00000012822	LNPK (ENSMLUG00000006972) #15	ENSMLUG00000022478	EVX2 (ENSMLUG00000006989) #16	HOXD13 (ENSMLUG00000006997) #17	HOXD12 (ENSMLUG00000007009) #18	HOXD11 (ENSMLUG00000007030) #19	HOXD10 (ENSMLUG00000007048) #20	HOXD8 (ENSMLUG00000028864) #22	HOXD4 (ENSMLUG00000012508) #23	HOXD3 (ENSMLUG00000012510) #24	ENSMLUG00000029447 #25	MTX2 (ENSMLUG00000015966) #26	ENSMLUG00000003906 ##27	NFE2L2 (ENSMLUG00000003909) #28	ENSMLUG00000025480	AGPS (ENSMLUG00000005113) #29	ENSMLUG00000005126 #30	ENSMLUG00000005133 #30	ENSMLUG00000028755	PDE11A (ENSMLUG00000005135) #31	RBM45 (ENSMLUG00000005782) #33	OSBPL6 (ENSMLUG00000005787) #34	ENSMLUG00000022423
Megabat	MODERN SPECIES	1085										LNPK (ENSPVAG00000017411) #15	EVX2 (ENSPVAG00000017414) #16	HOXD13 (ENSPVAG00000017415) #17	HOXD12 (ENSPVAG00000017416) #18	HOXD11 (ENSPVAG00000017417) #19	HOXD10 (ENSPVAG00000017418) #20	HOXD8 (ENSPVAG00000017420) #22	HOXD3 (ENSPVAG00000017421) #24	HOXD1 (ENSPVAG00000017425) #25	MTX2 (ENSPVAG00000017426) #26
Equus	ANCESTRAL SPECIES	18	ENSGT00390000013474.a #9	ENSGT00390000004153 #10	ENSGT00910000144296 #11	ENSGT00940000156851 #12	ENSGT01030000234635.a.b.a.b.b.a.a #13	ENSGT00940000156582 #14	ENSGT00940000154298.a.a	ENSGT00390000001859 #15	ENSGT00390000005569.x.a.a.b	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #26	ENSGT00940000153147.m.a.a.a.b.a.b #27	ENSGT00950000182892.a.a.b #28	ENSGT00940000156112 #29	ENSGT00390000010116 #30	ENSGT00940000162151 #31	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #33	ENSGT00940000156791 #34	ENSGT00940000157618	ENSGT00950000183140.a.b #35	ENSGT00940000159964 #36
Donkey	MODERN SPECIES	24	SCRN3 (ENSEASG00005022597) #9	GPR155 (ENSEASG00005022591) #10	WIPF1 (ENSEASG00005022583) #11	CHRNA1 (ENSEASG00005022581) #12	CHN1 (ENSEASG00005022579) #13	ATF2 (ENSEASG00005022575) #14	ATP5MC3 (ENSEASG00005022573)	LNPK (ENSEASG00005022567) #15	ENSEASG00005022564	EVX2 (ENSEASG00005022562) #16	HOXD13 (ENSEASG00005029242) #17	HOXD12 (ENSEASG00005022555) #18	HOXD11 (ENSEASG00005030904) #19	HOXD10 (ENSEASG00005022552) #20	HOXD9 (ENSEASG00005023994) #21	HOXD8 (ENSEASG00005033905) #22	HOXD4 (ENSEASG00005024806) #23	HOXD3 (ENSEASG00005022544) #24	HOXD1 (ENSEASG00005030887) #25	MTX2 (ENSEASG00005022537) #26	HNRNPA3 (ENSEASG00005022530) #27	NFE2L2 (ENSEASG00005028739) #28	ENSEASG00005026944 #30	AGPS (ENSEASG00005022514) #29	ENSEASG00005028303 #30	PDE11A (ENSEASG00005022489) #31	ENSEASG00005026887	RBM45 (ENSEASG00005022475) #33	OSBPL6 (ENSEASG00005022455) #34	PRKRA (ENSEASG00005022436)	PJVK (ENSEASG00005022430) #35
Horse	MODERN SPECIES	9	CIR1 (ENSECAG00000006773) #8	SCRN3 (ENSECAG00000018530) #9	GPR155 (ENSECAG00000008471) #10	WIPF1 (ENSECAG00000015984)	CHRNA1 (ENSECAG00000019649) #12	CHN1 (ENSECAG00000008277) #13	ATF2 (ENSECAG00000018723) #14	ATP5MC3 (ENSECAG00000008514)	LNPK (ENSECAG00000008534) #15	ENSECAG00000043913	EVX2 (ENSECAG00000019796) #16	HOXD13 (ENSECAG00000020388) #17	HOXD11 (ENSECAG00000003045) #19	HOXD10 (ENSECAG00000020599) #20	HOXD9 (ENSECAG00000021845) #21	HOXD8 (ENSECAG00000021980) #22	HOXD4 (ENSECAG00000038429) #23	HOXD3 (ENSECAG00000022129) #24	HOXD1 (ENSECAG00000035437) #25	MTX2 (ENSECAG00000022464) #26	HNRNPA3 (ENSECAG00000059976) #27	NFE2L2 (ENSECAG00000005675) #28	AGPS (ENSECAG00000008695) #29	ENSECAG00000051775	ENSECAG00000000927 #30	PDE11A (ENSECAG00000004445) #31	ENSECAG00000057854	CYCT (ENSECAG00000016170)	RBM45 (ENSECAG00000017129) #33	OSBPL6 (ENSECAG00000020078) #34	PRKRA (ENSECAG00000024263)