Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Primates	ANCESTRAL SPECIES	13	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.a #28	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.jb #31	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00390000004153 #8	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.a #28	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.jb #31	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a
Hominidae	ANCESTRAL SPECIES	17	ENSGT00390000004153 #8	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.a #28	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.jb #31	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a
Orangutan	MODERN SPECIES	15	ENSPPYG00000012946 #7	GPR155 (ENSPPYG00000012947) #8	WIPF1 (ENSPPYG00000012948) #9	CHRNA1 (ENSPPYG00000012949) #10	CHN1 (ENSPPYG00000012950) #11	ATF2 (ENSPPYG00000012951) #12	ENSPPYG00000041465 #13	ATP5MC3 (ENSPPYG00000037033) #14	LNPK (ENSPPYG00000032630) #15	EVX2 (ENSPPYG00000012955) #16	HOXD13 (ENSPPYG00000012956) #17	HOXD12 (ENSPPYG00000012957) #18	HOXD11 (ENSPPYG00000031598) #19	HOXD10 (ENSPPYG00000012958) #20	HOXD9 (ENSPPYG00000012959) #21	HOXD8 (ENSPPYG00000037201) #22	HOXD4 (ENSPPYG00000034536) #23	HOXD3 (ENSPPYG00000012963) #24	HOXD1 (ENSPPYG00000012964) #25	ENSPPYG00000037565 #26	MTX2 (ENSPPYG00000012966) #27	HNRNPA3 (ENSPPYG00000012967) #28	NFE2L2 (ENSPPYG00000012968) #29	AGPS (ENSPPYG00000012969) #30	TTC30B (ENSPPYG00000034101) #31	TTC30A (ENSPPYG00000038583) #32	PDE11A (ENSPPYG00000012972) #33	RBM45 (ENSPPYG00000012974) #34	OSBPL6 (ENSPPYG00000012975) #35	ENSPPYG00000012976 #36	PJVK (ENSPPYG00000012977) #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00390000004153 #8	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.jb #31	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00390000004153 #8	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.jb #31	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34
Pan	ANCESTRAL SPECIES	12	ENSGT00390000004153 #8	ENSGT00940000167313	ENSGT00390000008029.v	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.jb #31	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34
Bonobo	MODERN SPECIES	15	SCRN3 (ENSPPAG00000032328) #7	GPR155 (ENSPPAG00000032733) #8	ENSPPAG00000040473	WIPF1 (ENSPPAG00000037968) #9	CHRNA1 (ENSPPAG00000024985) #10	ENSPPAG00000023882 #11	ATF2 (ENSPPAG00000027656) #12	ATP5MC3 (ENSPPAG00000036512) #14	LNPK (ENSPPAG00000030440) #15	ENSPPAG00000039855 #16	ENSPPAG00000010483 #17	HOXD12 (ENSPPAG00000017089) #18	ENSPPAG00000028125 #19	HOXD10 (ENSPPAG00000036046) #20	HOXD9 (ENSPPAG00000039242) #21	ENSPPAG00000034189 #22	HOXD4 (ENSPPAG00000034992) #23	HOXD3 (ENSPPAG00000031713) #24	ENSPPAG00000013988	ENSPPAG00000031665 #25	ENSPPAG00000025118 ##26	MTX2 (ENSPPAG00000043265) #27	ENSPPAG00000012679	HNRNPA3 (ENSPPAG00000023768) ##28	NFE2L2 (ENSPPAG00000037501) #29	AGPS (ENSPPAG00000036868) #30	TTC30B (ENSPPAG00000019313) #31	TTC30A (ENSPPAG00000023829) #32	PDE11A (ENSPPAG00000036387) #33	ENSPPAG00000029280	ENSPPAG00000035494
Chimpanzee	MODERN SPECIES	15	CIR1 (ENSPTRG00000012652)	SCRN3 (ENSPTRG00000012653) #7	GPR155 (ENSPTRG00000012655) #8	WIPF1 (ENSPTRG00000012656)	CHRNA1 (ENSPTRG00000012658) #10	CHN1 (ENSPTRG00000012659) #11	ATF2 (ENSPTRG00000012660) #12	ATP5MC3 (ENSPTRG00000047314) #14	LNPK (ENSPTRG00000012662) #15	EVX2 (ENSPTRG00000012663) #16	HOXD13 (ENSPTRG00000012664) #17	HOXD12 (ENSPTRG00000012665) #18	HOXD11 (ENSPTRG00000012666) #19	HOXD10 (ENSPTRG00000012667) #20	HOXD9 (ENSPTRG00000043464) #21	HOXD8 (ENSPTRG00000012669) #22	HOXD4 (ENSPTRG00000051862) #23	HOXD3 (ENSPTRG00000012672) #24	ENSPTRG00000051348	HOXD1 (ENSPTRG00000052716) #25	ENSPTRG00000023851 ##26	MTX2 (ENSPTRG00000012674) #27	ENSPTRG00000042815	HNRNPA3 (ENSPTRG00000012676) ##28	NFE2L2 (ENSPTRG00000012677) #29	AGPS (ENSPTRG00000012680) #30	TTC30B (ENSPTRG00000048299) #31	TTC30A (ENSPTRG00000044238) #32	PDE11A (ENSPTRG00000012684) #33	ENSPTRG00000046153	ENSPTRG00000051577
Human	MODERN SPECIES	11	CIR1 (ENSG00000138433)	SCRN3 (ENSG00000144306) #7	GPR155 (ENSG00000163328) #8	WIPF1 (ENSG00000115935) #9	CHRNA1 (ENSG00000138435) #10	CHN1 (ENSG00000128656) #11	ATF2 (ENSG00000115966) #12	ATP5MC3 (ENSG00000154518) #14	LNPK (ENSG00000144320) #15	EVX2 (ENSG00000174279) #16	HOXD13 (ENSG00000128714) #17	HOXD12 (ENSG00000170178) #18	HOXD11 (ENSG00000128713) #19	HOXD10 (ENSG00000128710) #20	HOXD9 (ENSG00000128709) #21	HOXD8 (ENSG00000175879) #22	HOXD3 (ENSG00000128652) #24	HOXD4 (ENSG00000170166) #23	HOXD1 (ENSG00000128645) #25	MTX2 (ENSG00000128654) #27	HNRNPA3 (ENSG00000170144) ##28	NFE2L2 (ENSG00000116044) #29	AGPS (ENSG00000018510) #30	TTC30B (ENSG00000196659) #31	TTC30A (ENSG00000197557) #32	PDE11A (ENSG00000128655) #33	RBM45 (ENSG00000155636) #34	OSBPL6 (ENSG00000079156) #35	PRKRA (ENSG00000180228) ##36	PJVK (ENSG00000204311) #37	FKBP7 (ENSG00000079150)
Gorilla	MODERN SPECIES	15	SCRN3 (ENSGGOG00000034896) #7	GPR155 (ENSGGOG00000004876) #8	ENSGGOG00000005480	WIPF1 (ENSGGOG00000016773) #9	CHRNA1 (ENSGGOG00000008036) #10	CHN1 (ENSGGOG00000002177) #11	ATF2 (ENSGGOG00000027461) #12	ATP5MC3 (ENSGGOG00000036796) #14	LNPK (ENSGGOG00000007852) #15	EVX2 (ENSGGOG00000001335) #16	ENSGGOG00000041387 #17	ENSGGOG00000038035 #18	ENSGGOG00000044084	HOXD10 (ENSGGOG00000001341) #20	HOXD9 (ENSGGOG00000001343) #21	ENSGGOG00000009898 #22	HOXD4 (ENSGGOG00000042533) #23	HOXD3 (ENSGGOG00000037089) #24	ENSGGOG00000037792	HOXD1 (ENSGGOG00000001348) #25	ENSGGOG00000041480	ENSGGOG00000040635 #18	ENSGGOG00000040237 #17	MTX2 (ENSGGOG00000044125) #27	ENSGGOG00000037084 #7	ENSGGOG00000043877	HNRNPA3 (ENSGGOG00000006130) ##28	NFE2L2 (ENSGGOG00000001231) #29	ENSGGOG00000037000	AGPS (ENSGGOG00000012114) #30	TTC30A (ENSGGOG00000009811) #32
Gibbon	MODERN SPECIES	14	SCRN3 (ENSNLEG00000005880) #7	GPR155 (ENSNLEG00000005896) #8	ENSNLEG00000033625	WIPF1 (ENSNLEG00000005907) #9	CHRNA1 (ENSNLEG00000005914) #10	CHN1 (ENSNLEG00000005923) #11	ENSNLEG00000028605	ATF2 (ENSNLEG00000005938) #12	ATP5MC3 (ENSNLEG00000005971) #14	LNPK (ENSNLEG00000005977) #15	EVX2 (ENSNLEG00000005999) #16	HOXD13 (ENSNLEG00000029303) #17	HOXD12 (ENSNLEG00000006006) #18	HOXD10 (ENSNLEG00000006010) #20	HOXD9 (ENSNLEG00000006011) #21	ENSNLEG00000006003 #22	HOXD4 (ENSNLEG00000006014) #23	HOXD3 (ENSNLEG00000006018) #24	ENSNLEG00000027160	HOXD1 (ENSNLEG00000006019) #25	MTX2 (ENSNLEG00000006020) #27	ENSNLEG00000035565	ENSNLEG00000029348	HNRNPA3 (ENSNLEG00000028401) ##28	NFE2L2 (ENSNLEG00000006029) #29	AGPS (ENSNLEG00000006030) #30	TTC30B (ENSNLEG00000033307) #31	TTC30A (ENSNLEG00000030979) #32	PDE11A (ENSNLEG00000006056) #33	ENSNLEG00000030325	RBM45 (ENSNLEG00000006080) #34
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.a #28	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.jb #31	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.jb #31	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00940000165163	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #15	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.jb #31	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34
Macaca	ANCESTRAL SPECIES	15	ENSGT00940000165163	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00390000018390.jc.n	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.jb #31	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00940000168702	ENSGT00680000100059 #34	ENSGT00940000156791 #35
Pig-tailed macaque	MODERN SPECIES	585	WIPF1 (ENSMNEG00000045560) #9	CHRNA1 (ENSMNEG00000043912) #10	ENSMNEG00000009103	CHN1 (ENSMNEG00000033120) #11	ATF2 (ENSMNEG00000037988) #12	ATP5MC3 (ENSMNEG00000029106) #14	ENSMNEG00000035184	LNPK (ENSMNEG00000028702) #15	ENSMNEG00000024050	EVX2 (ENSMNEG00000028323) #16	HOXD13 (ENSMNEG00000027142) #17	HOXD12 (ENSMNEG00000002891) #18	HOXD11 (ENSMNEG00000029127) #19	HOXD10 (ENSMNEG00000033923) #20	HOXD9 (ENSMNEG00000044938) #21	HOXD8 (ENSMNEG00000028133) #22	HOXD4 (ENSMNEG00000030845) #23	HOXD3 (ENSMNEG00000040202) #24	ENSMNEG00000018849	HOXD1 (ENSMNEG00000010514) #25	MTX2 (ENSMNEG00000032881) #27	ENSMNEG00000026533	ENSMNEG00000034936 ##28	NFE2L2 (ENSMNEG00000028208) #29	AGPS (ENSMNEG00000043672) #30	TTC30B (ENSMNEG00000011632) #31	TTC30A (ENSMNEG00000000192) #32	PDE11A (ENSMNEG00000037080) #33
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00390000004153 #8	ENSGT00940000166143.A.a.b.b.b.b.a.b.b	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.j	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000170471.B.a.a.a	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.jb #31	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00940000168702	ENSGT00680000100059 #34
Crab-eating macaque	MODERN SPECIES	3	ENSMFAG00000039499	ENSMFAG00000060672	WIPF1 (ENSMFAG00000034165) #9	CHRNA1 (ENSMFAG00000042992) #10	CHN1 (ENSMFAG00000002404) #11	ATF2 (ENSMFAG00000002278) #12	ATP5MC3 (ENSMFAG00000056189) #14	ENSMFAG00000002936	LNPK (ENSMFAG00000002105) #15	ENSMFAG00000053875	HOXD13 (ENSMFAG00000033237) #17	HOXD12 (ENSMFAG00000051547) #18	ENSMFAG00000043724 #19	HOXD10 (ENSMFAG00000031117) #20	HOXD9 (ENSMFAG00000000099) #21	HOXD8 (ENSMFAG00000065214) #22	HOXD4 (ENSMFAG00000052240) #23	HOXD3 (ENSMFAG00000034065) #24	ENSMFAG00000047422	HOXD1 (ENSMFAG00000046035) #25	MTX2 (ENSMFAG00000026822) #27	ENSMFAG00000065500	ENSMFAG00000058081	HNRNPA3 (ENSMFAG00000000823) ##28	NFE2L2 (ENSMFAG00000041108) #29	AGPS (ENSMFAG00000038904) #30	TTC30B (ENSMFAG00000057741) #31	TTC30A (ENSMFAG00000053112) #32	PDE11A (ENSMFAG00000042268) #33	ENSMFAG00000034055	RBM45 (ENSMFAG00000042524) #34
Rhesus	MODERN SPECIES	3	SCRN3 (ENSMMUG00000023009) #7	GPR155 (ENSMMUG00000021012) #8	ENSMMUG00000053004	WIPF1 (ENSMMUG00000009593) #9	CHRNA1 (ENSMMUG00000021796) #10	CHN1 (ENSMMUG00000021797) #11	ATF2 (ENSMMUG00000003947) #12	ATP5MC3 (ENSMMUG00000003954) #14	LNPK (ENSMMUG00000023498) #15	EVX2 (ENSMMUG00000061506) #16	HOXD13 (ENSMMUG00000055831) #17	HOXD12 (ENSMMUG00000023501) #18	HOXD11 (ENSMMUG00000047915) #19	HOXD10 (ENSMMUG00000046368) #20	HOXD9 (ENSMMUG00000032599) #21	HOXD8 (ENSMMUG00000023504) #22	HOXD4 (ENSMMUG00000060947) #23	HOXD3 (ENSMMUG00000051761) #24	ENSMMUG00000052177	HOXD1 (ENSMMUG00000065344) #25	MTX2 (ENSMMUG00000010185) #27	ENSMMUG00000031367	ENSMMUG00000054983	ENSMMUG00000062299	HNRNPA3 (ENSMMUG00000001858) ##28	NFE2L2 (ENSMMUG00000001861) #29	ENSMMUG00000065205	AGPS (ENSMMUG00000008502) #30	TTC30B (ENSMMUG00000043597) #31	TTC30A (ENSMMUG00000041827) #32	PDE11A (ENSMMUG00000002011) #33
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b	ENSGT00950000182827.A.j	ENSGT00390000001859 #15	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.jb #31	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34
Olive baboon	MODERN SPECIES	1	SCRN3 (ENSPANG00000001316) #7	GPR155 (ENSPANG00000006559) #8	WIPF1 (ENSPANG00000019541) #9	CHRNA1 (ENSPANG00000007790) #10	CHN1 (ENSPANG00000008236) #11	ENSPANG00000005473	ATF2 (ENSPANG00000004806) #12	ATP5MC3 (ENSPANG00000031591) #14	LNPK (ENSPANG00000011787) #15	ENSPANG00000039545 #16	ENSPANG00000044695 #17	ENSPANG00000044332 #18	HOXD11 (ENSPANG00000049530) #19	HOXD10 (ENSPANG00000050198) #20	HOXD9 (ENSPANG00000001061) #21	HOXD8 (ENSPANG00000049199) #22	HOXD4 (ENSPANG00000000542) #23	HOXD3 (ENSPANG00000000543) #24	HOXD1 (ENSPANG00000009593) #25	MTX2 (ENSPANG00000013333) #27	ENSPANG00000045287	ENSPANG00000018337 ##28	NFE2L2 (ENSPANG00000039361) #29	AGPS (ENSPANG00000004764) #30	TTC30B (ENSPANG00000046724) #31	TTC30A (ENSPANG00000041839) #32	PDE11A (ENSPANG00000025222) #33	ENSPANG00000029672	RBM45 (ENSPANG00000016088) #34	ENSPANG00000046096	OSBPL6 (ENSPANG00000016378) #35
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b	ENSGT00950000182827.A.j	ENSGT00390000001859 #15	ENSGT00950000182922.a.a.a.b.a.a.b.b	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00910000147400	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.jb #31	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34
Sooty mangabey	MODERN SPECIES	570	CHRNA1 (ENSCATG00000030584) #10	CHN1 (ENSCATG00000036640) #11	ENSCATG00000035911	ATF2 (ENSCATG00000005694) #12	ATP5MC3 (ENSCATG00000035329) #14	ENSCATG00000037951	ENSCATG00000041432	LNPK (ENSCATG00000039052) #15	ENSCATG00000005782	EVX2 (ENSCATG00000038250) #16	HOXD13 (ENSCATG00000031889) #17	HOXD12 (ENSCATG00000032043) #18	HOXD10 (ENSCATG00000032256) #20	HOXD11 (ENSCATG00000031157) #19	HOXD9 (ENSCATG00000037190) #21	HOXD8 (ENSCATG00000032148) #22	HOXD4 (ENSCATG00000041719) #23	HOXD3 (ENSCATG00000029355) #24	ENSCATG00000032250	HOXD1 (ENSCATG00000032397) #25	MTX2 (ENSCATG00000039959) #27	ENSCATG00000022731	HNRNPA3 (ENSCATG00000032162) ##28	ENSCATG00000001855	NFE2L2 (ENSCATG00000036834) #29	AGPS (ENSCATG00000038387) #30	TTC30B (ENSCATG00000004635) #31	TTC30A (ENSCATG00000000123) #32	PDE11A (ENSCATG00000042325) #33	ENSCATG00000008317	ENSCATG00000039319
Drill	MODERN SPECIES	1072	ENSMLEG00000029654	WIPF1 (ENSMLEG00000001484) #9	CHRNA1 (ENSMLEG00000043089) #10	ENSMLEG00000000615	CHN1 (ENSMLEG00000032406) #11	ATF2 (ENSMLEG00000035167) #12	ATP5MC3 (ENSMLEG00000043816) #14	ENSMLEG00000001270	LNPK (ENSMLEG00000033659) #15	EVX2 (ENSMLEG00000035528) #16	HOXD13 (ENSMLEG00000031532) #17	HOXD12 (ENSMLEG00000032533) #18	ENSMLEG00000030792 #19	HOXD10 (ENSMLEG00000044067) #20	HOXD9 (ENSMLEG00000025695) #21	ENSMLEG00000042507 #22	HOXD4 (ENSMLEG00000024188) #23	HOXD3 (ENSMLEG00000037278) #24	HOXD1 (ENSMLEG00000035890) #25	MTX2 (ENSMLEG00000002029) #27	NFE2L2 (ENSMLEG00000042705) #29	AGPS (ENSMLEG00000033858) #30	TTC30B (ENSMLEG00000027894) #31	TTC30A (ENSMLEG00000027775) #32	ENSMLEG00000039892	ENSMLEG00000035955	PDE11A (ENSMLEG00000044286) #33	RBM45 (ENSMLEG00000042404) #34	OSBPL6 (ENSMLEG00000021439) #35	PRKRA (ENSMLEG00000019578) ##36	PJVK (ENSMLEG00000027972) #37
Vervet Monkey	MODERN SPECIES	1	SP9 (ENSCSAG00000014648)	CIR1 (ENSCSAG00000014627)	SCRN3 (ENSCSAG00000014584) #7	GPR155 (ENSCSAG00000014572) #8	WIPF1 (ENSCSAG00000014556) #9	CHRNA1 (ENSCSAG00000014545) #10	CHN1 (ENSCSAG00000014539) #11	ATF2 (ENSCSAG00000014523) #12	LNPK (ENSCSAG00000014506) #15	EVX2 (ENSCSAG00000014486) #16	HOXD13 (ENSCSAG00000014475) #17	HOXD12 (ENSCSAG00000014464) #18	HOXD11 (ENSCSAG00000014457) #19	HOXD10 (ENSCSAG00000014448) #20	HOXD9 (ENSCSAG00000014441) #21	HOXD8 (ENSCSAG00000014437) #22	HOXD4 (ENSCSAG00000014429) #23	HOXD3 (ENSCSAG00000014422) #24	HOXD1 (ENSCSAG00000014419) #25	MTX2 (ENSCSAG00000014412) #27	ENSCSAG00000014399 ##28	NFE2L2 (ENSCSAG00000014353) #29	AGPS (ENSCSAG00000014345) #30	TTC30A (ENSCSAG00000018651) #32	PDE11A (ENSCSAG00000014313) #33	ENSCSAG00000014240	RBM45 (ENSCSAG00000014231) #34	OSBPL6 (ENSCSAG00000014221) #35	PJVK (ENSCSAG00000014212) #37	FKBP7 (ENSCSAG00000014194)	PLEKHA3 (ENSCSAG00000014182)
Rhinopithecus	ANCESTRAL SPECIES	148						ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00950000182827.A.i.b	ENSGT00390000001859.c #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00940000154301.`b.a	ENSGT00960000186717.a	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.a #28	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.kb #32	ENSGT00940000162151 #33	ENSGT00390000010991.f.b	ENSGT00910000148248	ENSGT00940000168702
Golden snub-nosed monkey	MODERN SPECIES	722								ENSRROG00000041768 #15	ENSRROG00000044546	EVX2 (ENSRROG00000044705) #16	HOXD13 (ENSRROG00000040419) #17	HOXD12 (ENSRROG00000043268) #18	ENSRROG00000043226 #19	HOXD9 (ENSRROG00000032216) #21	HOXD10 (ENSRROG00000036162) #20	ENSRROG00000024611 #22	HOXD4 (ENSRROG00000026646) #23	HOXD3 (ENSRROG00000044509) #24	HOXD1 (ENSRROG00000035364) #25	ENSRROG00000038369	ENSRROG00000042876	ENSRROG00000020854	MTX2 (ENSRROG00000030249) #27	ENSRROG00000028794 ##28	NFE2L2 (ENSRROG00000045317) #29	AGPS (ENSRROG00000035068) #30	TTC30A (ENSRROG00000023478) #32	PDE11A (ENSRROG00000028809) #33	ENSRROG00000041594	RBM45 (ENSRROG00000031398) #34	OSBPL6 (ENSRROG00000036096) #35
Black snub-nosed monkey	MODERN SPECIES	241							ATF2 (ENSRBIG00000041657) #12	ATP5MC3 (ENSRBIG00000040343) #14	ENSRBIG00000038159	LNPK (ENSRBIG00000038235) #15	HOXD13 (ENSRBIG00000033719) #17	ENSRBIG00000035253 #19	HOXD12 (ENSRBIG00000040792) #18	HOXD10 (ENSRBIG00000030470) #20	HOXD9 (ENSRBIG00000035340) #21	HOXD8 (ENSRBIG00000036417) #22	HOXD4 (ENSRBIG00000027637) #23	HOXD3 (ENSRBIG00000044829) #24	HOXD1 (ENSRBIG00000031297) #25	ENSRBIG00000032024	ENSRBIG00000042767	MTX2 (ENSRBIG00000043097) #27	ENSRBIG00000012615 #28	NFE2L2 (ENSRBIG00000042825) #29	AGPS (ENSRBIG00000039582) #30	TTC30A (ENSRBIG00000041155) #32	ENSRBIG00000030274	ENSRBIG00000035583	PDE11A (ENSRBIG00000043623) #33	RBM45 (ENSRBIG00000033680) #34	OSBPL6 (ENSRBIG00000040280) #35
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.lb #32	ENSGT00390000010116.mb #32	ENSGT00940000162151 #33	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Cebidae	ANCESTRAL SPECIES	11	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.lb #32	ENSGT00390000010116.mb #32	ENSGT00940000162151 #33	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.lb #32	ENSGT00390000010116.mb #32	ENSGT00940000162151 #33	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Bolivian squirrel monkey	MODERN SPECIES	46	ENSSBOG00000020259 #28	CIR1 (ENSSBOG00000028527)	SCRN3 (ENSSBOG00000033089) #7	GPR155 (ENSSBOG00000034957) #8	WIPF1 (ENSSBOG00000032169) #9	CHRNA1 (ENSSBOG00000035763) #10	CHN1 (ENSSBOG00000016307) #11	ATF2 (ENSSBOG00000025461) #12	ATP5MC3 (ENSSBOG00000022688) #14	LNPK (ENSSBOG00000023054) #15	EVX2 (ENSSBOG00000034364) #16	HOXD13 (ENSSBOG00000032579) #17	HOXD12 (ENSSBOG00000025723) #18	HOXD10 (ENSSBOG00000020553) #20	HOXD9 (ENSSBOG00000031095) #21	ENSSBOG00000029405 #22	HOXD4 (ENSSBOG00000031535) #23	HOXD3 (ENSSBOG00000031894) #24	HOXD1 (ENSSBOG00000030906) #25	MTX2 (ENSSBOG00000025795) #27	HNRNPA3 (ENSSBOG00000034307) ##28	NFE2L2 (ENSSBOG00000022740) #29	AGPS (ENSSBOG00000026720) #30	ENSSBOG00000019156 #32	ENSSBOG00000018055 #32	PDE11A (ENSSBOG00000026746) #33	RBM45 (ENSSBOG00000005469) #34	OSBPL6 (ENSSBOG00000020436) #35	ENSSBOG00000035006	PRKRA (ENSSBOG00000012105) #36	PJVK (ENSSBOG00000022982) #37
Capuchin	MODERN SPECIES	110	GPR155 (ENSCCAG00000032455) #8	WIPF1 (ENSCCAG00000012994) #9	CHRNA1 (ENSCCAG00000032209) #10	CHN1 (ENSCCAG00000027038) #11	ENSCCAG00000034541	ATF2 (ENSCCAG00000035902) #12	ENSCCAG00000020514 #14	ENSCCAG00000015947	LNPK (ENSCCAG00000022702) #15	EVX2 (ENSCCAG00000032502) #16	HOXD13 (ENSCCAG00000032945) #17	HOXD12 (ENSCCAG00000026325) #18	HOXD11 (ENSCCAG00000034968) #19	HOXD10 (ENSCCAG00000020764) #20	HOXD9 (ENSCCAG00000021007) #21	HOXD8 (ENSCCAG00000001172) #22	ENSCCAG00000035403 #23
Marmoset	MODERN SPECIES	18	WIPF1 (ENSCJAG00000048519) #9	CHRNA1 (ENSCJAG00000008007) #10	CHN1 (ENSCJAG00000008041) #11	ATF2 (ENSCJAG00000008085) #12	ATP5MC3 (ENSCJAG00000008207) #14	ENSCJAG00000080703	ENSCJAG00000084464	ENSCJAG00000022954	LNPK (ENSCJAG00000008226) #15	EVX2 (ENSCJAG00000077487) #16	HOXD13 (ENSCJAG00000040882) #17	HOXD12 (ENSCJAG00000079626) #18	HOXD11 (ENSCJAG00000048503) #19	HOXD10 (ENSCJAG00000008269) #20	HOXD9 (ENSCJAG00000046789) #21	HOXD8 (ENSCJAG00000008284) #22	HOXD4 (ENSCJAG00000008286) #23	HOXD3 (ENSCJAG00000063715) #24	HOXD1 (ENSCJAG00000008290) #25	MTX2 (ENSCJAG00000039174) #27	ENSCJAG00000072603	ENSCJAG00000006928 ##28	NFE2L2 (ENSCJAG00000008340) #29	ENSCJAG00000059559	ENSCJAG00000021732 #32	AGPS (ENSCJAG00000021508) #30	ENSCJAG00000081808	ENSCJAG00000081742	PDE11A (ENSCJAG00000014554) #33	ENSCJAG00000021516 #34	ENSCJAG00000072241
Mas night monkey	MODERN SPECIES	1333				ENSANAG00000011341	ENSANAG00000037338 #12	ENSANAG00000033889 #14	ENSANAG00000023367	ENSANAG00000021797	LNPK (ENSANAG00000019161) #15	EVX2 (ENSANAG00000031929) #16	HOXD13 (ENSANAG00000029500) #17	HOXD12 (ENSANAG00000008919) #18	HOXD11 (ENSANAG00000029678) #19	HOXD10 (ENSANAG00000025381) #20	HOXD9 (ENSANAG00000024699) #21	HOXD8 (ENSANAG00000026980) #22	HOXD4 (ENSANAG00000028028) #23	HOXD3 (ENSANAG00000026428) #24	HOXD1 (ENSANAG00000019775) #25	ENSANAG00000031061	MTX2 (ENSANAG00000022501) #27	HNRNPA3 (ENSANAG00000002931) ##28	NFE2L2 (ENSANAG00000023669) #29	AGPS (ENSANAG00000019626) #30	ENSANAG00000003240 #32	ENSANAG00000025414 #33
Tarsier	MODERN SPECIES	1909																ENSTSYG00000001418 #22	HOXD4 (ENSTSYG00000032287) #23	HOXD3 (ENSTSYG00000036098) #24	MTX2 (ENSTSYG00000006401) #27
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.a #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000164264	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.a #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Mouse lemur	MODERN SPECIES	30	SCRN3 (ENSMICG00000000366) #7	GPR155 (ENSMICG00000000369) #8	ENSMICG00000031974	CHRNA1 (ENSMICG00000014284) #10	ENSMICG00000038672	CHN1 (ENSMICG00000014292) #11	ATF2 (ENSMICG00000006417) #12	ATP5MC3 (ENSMICG00000006421) #14	LNPK (ENSMICG00000027707) #15	EVX2 (ENSMICG00000035343) #16	HOXD13 (ENSMICG00000002170) #17	HOXD12 (ENSMICG00000002172) #18	HOXD11 (ENSMICG00000048033) #19	HOXD10 (ENSMICG00000028373) #20	HOXD9 (ENSMICG00000031229) #21	HOXD8 (ENSMICG00000004277) #22	HOXD4 (ENSMICG00000043209) #23	HOXD3 (ENSMICG00000004286) #24	HOXD1 (ENSMICG00000044650) #25	MTX2 (ENSMICG00000004295) #27	ENSMICG00000027841 #28	NFE2L2 (ENSMICG00000009559) #29	AGPS (ENSMICG00000003750) #30	ENSMICG00000003768 #32	ENSMICG00000046051 #32	ENSMICG00000030225	PDE11A (ENSMICG00000003770) #33	ENSMICG00000047030	RBM45 (ENSMICG00000003787) #34	OSBPL6 (ENSMICG00000003793) #35	PRKRA (ENSMICG00000009883) #36
Lemuriformes_a	ANCESTRAL SPECIES	69	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.a #28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Coquerels sifaka	MODERN SPECIES	478	SCRN3 (ENSPCOG00000015456) #7	GPR155 (ENSPCOG00000014376) #8	ENSPCOG00000018466	ENSPCOG00000015733	CHRNA1 (ENSPCOG00000020642) #10	CHN1 (ENSPCOG00000018830) #11	ATF2 (ENSPCOG00000025416) #12	ATP5MC3 (ENSPCOG00000016374) #14	LNPK (ENSPCOG00000026983) #15	EVX2 (ENSPCOG00000022416) #16	HOXD13 (ENSPCOG00000018735) #17	HOXD12 (ENSPCOG00000022036) #18	HOXD11 (ENSPCOG00000015055) #19	HOXD10 (ENSPCOG00000023637) #20	HOXD9 (ENSPCOG00000026809) #21	HOXD8 (ENSPCOG00000024233) #22	HOXD4 (ENSPCOG00000018337) #23	HOXD3 (ENSPCOG00000017195) #24	HOXD1 (ENSPCOG00000024445) #25	MTX2 (ENSPCOG00000025077) #27	NFE2L2 (ENSPCOG00000007362) #29	AGPS (ENSPCOG00000018665) #30	PDE11A (ENSPCOG00000025830) #33	ENSPCOG00000025842	ENSPCOG00000028806	RBM45 (ENSPCOG00000021526) #34	ENSPCOG00000005659	OSBPL6 (ENSPCOG00000010731) #35	PRKRA (ENSPCOG00000018812) #36	PJVK (ENSPCOG00000022935) #37	FKBP7 (ENSPCOG00000018941)
Greater bamboo lemur	MODERN SPECIES	243	SCRN3 (ENSPSMG00000024170) #7	GPR155 (ENSPSMG00000024199) #8	WIPF1 (ENSPSMG00000024219) #9	CHRNA1 (ENSPSMG00000024264) #10	CHN1 (ENSPSMG00000024301) #11	ATF2 (ENSPSMG00000024416) #12	ATP5MC3 (ENSPSMG00000024446) #14	LNPK (ENSPSMG00000024460) #15	ENSPSMG00000024465	EVX2 (ENSPSMG00000024469) #16	HOXD13 (ENSPSMG00000024474) #17	HOXD12 (ENSPSMG00000024476) #18	HOXD11 (ENSPSMG00000024479) #19	HOXD10 (ENSPSMG00000024482) #20	HOXD9 (ENSPSMG00000024487) #21	HOXD8 (ENSPSMG00000024501) #22	HOXD4 (ENSPSMG00000024504) #23	HOXD3 (ENSPSMG00000024507) #24	ENSPSMG00000024512	HOXD1 (ENSPSMG00000024516) #25	NNT (ENSPSMG00000024528)	PAIP1 (ENSPSMG00000024554)	ENSPSMG00000024563
Bushbaby	MODERN SPECIES	163	GPR155 (ENSOGAG00000016571) #8	WIPF1 (ENSOGAG00000016579) #9	CHRNA1 (ENSOGAG00000000890) #10	CHN1 (ENSOGAG00000000894) #11	ATF2 (ENSOGAG00000011373) #12	ATP5MC3 (ENSOGAG00000027578) #14	ENSOGAG00000026184	ENSOGAG00000030354	LNPK (ENSOGAG00000030372) #15	EVX2 (ENSOGAG00000025378) #16	HOXD13 (ENSOGAG00000027055) #17	HOXD12 (ENSOGAG00000015689) #18	HOXD11 (ENSOGAG00000029520) #19	HOXD10 (ENSOGAG00000015694) #20	HOXD9 (ENSOGAG00000015697) #21	HOXD8 (ENSOGAG00000015707) #22	HOXD4 (ENSOGAG00000029168) #23	HOXD3 (ENSOGAG00000015710) #24	HOXD1 (ENSOGAG00000015712) #25	MTX2 (ENSOGAG00000016422) #27	ENSOGAG00000032690	ENSOGAG00000028132 #28	NFE2L2 (ENSOGAG00000034393) #29	AGPS (ENSOGAG00000013184) #30	ENSOGAG00000013189 #32	ENSOGAG00000013191	ENSOGAG00000026648	RBM45 (ENSOGAG00000015195) #34	OSBPL6 (ENSOGAG00000013765) #35	PRKRA (ENSOGAG00000013971) #36	PJVK (ENSOGAG00000033780) #37
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Tree shrew	MODERN SPECIES	3966												EVX2 (ENSTBEG00000010517) #16	HOXD12 (ENSTBEG00000010799) #18	HOXD10 (ENSTBEG00000010925) #20	HOXD9 (ENSTBEG00000010979) #21	HOXD8 (ENSTBEG00000011462) #22	ENSTBEG00000011786 #25
Glires	ANCESTRAL SPECIES	14	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT00390000000673.b	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000164264	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37
Pika	MODERN SPECIES	959													ENSOPRG00000004018 #19	HOXD10 (ENSOPRG00000004038) #20	ENSOPRG00000004049 #21	HOXD8 (ENSOPRG00000004065) #22	ENSOPRG00000004081 #23	HOXD3 (ENSOPRG00000004098) #24	ENSOPRG00000004116 #25
Rabbit	MODERN SPECIES	18	SCRN3 (ENSOCUG00000011499) #7	GPR155 (ENSOCUG00000003683) #8	ENSOCUG00000036607	ENSOCUG00000005696	CHRNA1 (ENSOCUG00000024814) #10	CHN1 (ENSOCUG00000008134) #11	ATF2 (ENSOCUG00000012156) #12	ATP5MC3 (ENSOCUG00000012164) #14	LNPK (ENSOCUG00000008962) #15	EVX2 (ENSOCUG00000032776) #16	HOXD13 (ENSOCUG00000029547) #17	HOXD12 (ENSOCUG00000002412) #18	HOXD11 (ENSOCUG00000013942) #19	HOXD10 (ENSOCUG00000008964) #20	HOXD9 (ENSOCUG00000023956) #21	ENSOCUG00000035940 #22	HOXD4 (ENSOCUG00000002413) #23	HOXD3 (ENSOCUG00000014119) #24	HOXD1 (ENSOCUG00000015582) #25	MTX2 (ENSOCUG00000008760) #27	ENSOCUG00000025666	ENSOCUG00000030456	ENSOCUG00000002743 ##28	NFE2L2 (ENSOCUG00000001009) #29	AGPS (ENSOCUG00000011521) #30	ENSOCUG00000029884 #32	ENSOCUG00000039012 #32	ENSOCUG00000008038	ENSOCUG00000039559	ENSOCUG00000025342	RBM45 (ENSOCUG00000001125) #34
Rodentia	ANCESTRAL SPECIES	14	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296.t #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964	ENSGT00940000155850
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296.t #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964	ENSGT00940000155850
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296.t #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000154808.a.a	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964	ENSGT00940000155850
Long-tailed chinchilla	MODERN SPECIES	110	KLKB1 (ENSCLAG00000016848)	F11 (ENSCLAG00000012318)	MTNR1A (ENSCLAG00000015269)	FAT1 (ENSCLAG00000013169)	ENSCLAG00000015923	ZFP42 (ENSCLAG00000011822)	TRIML2 (ENSCLAG00000011159)	TRIML1 (ENSCLAG00000014494)	LNPK (ENSCLAG00000015033) #15	EVX2 (ENSCLAG00000014389) #16	HOXD13 (ENSCLAG00000013095) #17	HOXD12 (ENSCLAG00000013058) #18	ENSCLAG00000012563 #19	HOXD10 (ENSCLAG00000012482) #20	HOXD9 (ENSCLAG00000012447) #21	ENSCLAG00000011108 #22	HOXD4 (ENSCLAG00000014461) #23	ENSCLAG00000013605 #24	HOXD1 (ENSCLAG00000012505) #25	MTX2 (ENSCLAG00000011598) #27	ENSCLAG00000011088	HNRNPA3 (ENSCLAG00000012855) ##28	NFE2L2 (ENSCLAG00000013122) #29	ENSCLAG00000012626	ENSCLAG00000013627	AGPS (ENSCLAG00000013279) #30	ENSCLAG00000017938 #32	ENSCLAG00000013714 #32	PDE11A (ENSCLAG00000013013) #33	RBM45 (ENSCLAG00000015215) #34	OSBPL6 (ENSCLAG00000011433) #35
Degu	MODERN SPECIES	106	ENSODEG00000008975 #9	ENSODEG00000019598	CHRNA1 (ENSODEG00000010458) #10	CHN1 (ENSODEG00000008560) #11	ATF2 (ENSODEG00000010947) #12	ENSODEG00000010951 #14	ENSODEG00000010385	LNPK (ENSODEG00000010046) #15	ENSODEG00000008992	EVX2 (ENSODEG00000010771) #16	HOXD13 (ENSODEG00000008793) #17	HOXD12 (ENSODEG00000008376) #18	ENSODEG00000010934 #19	HOXD10 (ENSODEG00000010382) #20	HOXD9 (ENSODEG00000008626) #21	ENSODEG00000010496 #22	HOXD4 (ENSODEG00000010297) #23	HOXD3 (ENSODEG00000009722) #24	HOXD1 (ENSODEG00000008961) #25	ENSODEG00000008879	MTX2 (ENSODEG00000008062) #27	ENSODEG00000009697	ENSODEG00000009265	NFE2L2 (ENSODEG00000010043) #29	AGPS (ENSODEG00000008272) #30	ENSODEG00000020058 #32	ENSODEG00000019592 #32	PDE11A (ENSODEG00000010682) #33	ENSODEG00000019574	RBM45 (ENSODEG00000007959) #34	ENSODEG00000019659
Guinea pig	MODERN SPECIES	3	CIR1 (ENSCPOG00000010275)	SCRN3 (ENSCPOG00000010281) #7	GPR155 (ENSCPOG00000010286) #8	ENSCPOG00000034131 #9	CHRNA1 (ENSCPOG00000000036) #10	ENSCPOG00000002789 #11	ATF2 (ENSCPOG00000004637) #12	ATP5MC3 (ENSCPOG00000040161) #14	LNPK (ENSCPOG00000010971) #15	EVX2 (ENSCPOG00000006711) #16	HOXD13 (ENSCPOG00000006722) #17	HOXD12 (ENSCPOG00000005496) #18	ENSCPOG00000019766 #19	HOXD10 (ENSCPOG00000011368) #20	HOXD9 (ENSCPOG00000015006) #21	HOXD8 (ENSCPOG00000015005) #22	HOXD4 (ENSCPOG00000036552) #23	HOXD3 (ENSCPOG00000034932) #24	HOXD1 (ENSCPOG00000005509) #25	MTX2 (ENSCPOG00000011099) #27	ENSCPOG00000027250	ENSCPOG00000004251 ##28	NFE2L2 (ENSCPOG00000031261) #29	AGPS (ENSCPOG00000000679) #30	ENSCPOG00000000681 #32	PDE11A (ENSCPOG00000000682) #33	RBM45 (ENSCPOG00000000684) #34	OSBPL6 (ENSCPOG00000002816) #35	ENSCPOG00000003900 #36	PJVK (ENSCPOG00000037882) #37	FKBP7 (ENSCPOG00000037159)
Naked mole-rat female	MODERN SPECIES	22	GPR155 (ENSHGLG00000012529) #8	ENSHGLG00000036822 #9	ENSHGLG00000039411 #9	CHRNA1 (ENSHGLG00000015432) #10	ENSHGLG00000016114 #11	ENSHGLG00000018805 #12	Atp5mc3 (ENSHGLG00000033165) #14	ENSHGLG00000040802	LNPK (ENSHGLG00000004015) #15	EVX2 (ENSHGLG00000004218) #16	HOXD13 (ENSHGLG00000050884) #17	HOXD12 (ENSHGLG00000005403) #18	HOXD11 (ENSHGLG00000034527) #19	HOXD9 (ENSHGLG00000007185) #21	HOXD10 (ENSHGLG00000033462) #20	ENSHGLG00000003577 #22	HOXD4 (ENSHGLG00000037842) #23	HOXD3 (ENSHGLG00000003761) #24	HOXD1 (ENSHGLG00000004072) #25	MTX2 (ENSHGLG00000004177) #27	ENSHGLG00000012734	ENSHGLG00000046644	ENSHGLG00000036655	HNRNPA3 (ENSHGLG00000005451) ##28	NFE2L2 (ENSHGLG00000006475) #29	AGPS (ENSHGLG00000007541) #30	ENSHGLG00000036841 #32	TTC30B (ENSHGLG00000042840) #32	ENSHGLG00000005226 #33	ENSHGLG00000006609	ENSHGLG00000007342 #34
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a.xb #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Marmotini	ANCESTRAL SPECIES	2	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a.xb.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.gb #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Alpin marmot	MODERN SPECIES	5	ENSMMMG00000023702 #7	GPR155 (ENSMMMG00000023705) #8	ENSMMMG00000023714	WIPF1 (ENSMMMG00000023716) #9	CHRNA1 (ENSMMMG00000023717) #10	CHN1 (ENSMMMG00000023718) #11	ENSMMMG00000023730	ATF2 (ENSMMMG00000023733) #12	ENSMMMG00000023748 #14	LNPK (ENSMMMG00000023755) #15	HOXD13 (ENSMMMG00000023759) #17	HOXD12 (ENSMMMG00000023760) #18	ENSMMMG00000023762 #19	HOXD10 (ENSMMMG00000023763) #20	HOXD9 (ENSMMMG00000023764) #21	ENSMMMG00000023765 #22	HOXD4 (ENSMMMG00000023767) #23	HOXD3 (ENSMMMG00000023768) #24	MTX2 (ENSMMMG00000023772) #27	NFE2L2 (ENSMMMG00000023776) #29	AGPS (ENSMMMG00000023778) #30
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a.xb.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.gb #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Squirrel	MODERN SPECIES	109	OLA1 (ENSSTOG00000015547)	CIR1 (ENSSTOG00000001233)	SCRN3 (ENSSTOG00000001236) #7	GPR155 (ENSSTOG00000001239) #8	ENSSTOG00000004271 #9	CHRNA1 (ENSSTOG00000004281) #10	CHN1 (ENSSTOG00000004301) #11	ATF2 (ENSSTOG00000014079) #12	ENSSTOG00000013572 #14	LNPK (ENSSTOG00000014498) #15	EVX2 (ENSSTOG00000014512) #16	HOXD13 (ENSSTOG00000004117) #17	HOXD12 (ENSSTOG00000004918) #18	HOXD10 (ENSSTOG00000003935) #20	HOXD9 (ENSSTOG00000026761) #21	ENSSTOG00000023453 #22	HOXD4 (ENSSTOG00000029055) #23	HOXD3 (ENSSTOG00000014680) #24	HOXD1 (ENSSTOG00000012230) #25	MTX2 (ENSSTOG00000014688) #27	ENSSTOG00000030884	HNRNPA3 (ENSSTOG00000025125) ##28	NFE2L2 (ENSSTOG00000000313) #29	AGPS (ENSSTOG00000012623) #30	ENSSTOG00000003267 #32	PDE11A (ENSSTOG00000012639) #33	ENSSTOG00000008853	RBM45 (ENSSTOG00000002708) #34	OSBPL6 (ENSSTOG00000006092) #35	PRKRA (ENSSTOG00000006156) #36	PJVK (ENSSTOG00000028411) #37
Arctic ground squirrel	MODERN SPECIES	323				WIPF1 (ENSUPAG00010020649) #9	CHRNA1 (ENSUPAG00010020641) #10	CHN1 (ENSUPAG00010020575) #11	ATF2 (ENSUPAG00010020491) #12	ENSUPAG00010020485 #14	LNPK (ENSUPAG00010020452) #15	EVX2 (ENSUPAG00010020442) #16	HOXD13 (ENSUPAG00010020441) #17	HOXD12 (ENSUPAG00010020440) #18	HOXD11 (ENSUPAG00010020439) #19	HOXD10 (ENSUPAG00010020434) #20	HOXD9 (ENSUPAG00010020431) #21	HOXD8 (ENSUPAG00010020425) #22	HOXD4 (ENSUPAG00010020416) #23	HOXD3 (ENSUPAG00010020410) #24	HOXD1 (ENSUPAG00010020407) #25	ENSUPAG00010020400	MTX2 (ENSUPAG00010020394) #27
Eurasian red squirrel	MODERN SPECIES	12	SCRN3 (ENSSVLG00005002703) #7	GPR155 (ENSSVLG00005002750) #8	WIPF1 (ENSSVLG00005002786) #9	CHRNA1 (ENSSVLG00005002856) #10	CHN1 (ENSSVLG00005003041) #11	ENSSVLG00005003279 #12	ENSSVLG00005003430 #14	ENSSVLG00005003466	LNPK (ENSSVLG00005003500) #15	EVX2 (ENSSVLG00005003539) #16	HOXD13 (ENSSVLG00005003554) #17	HOXD12 (ENSSVLG00005003565) #18	HOXD11 (ENSSVLG00005003581) #19	HOXD10 (ENSSVLG00005003599) #20	HOXD9 (ENSSVLG00005003618) #21	HOXD8 (ENSSVLG00005003645) #22	HOXD4 (ENSSVLG00005003676) #23	HOXD1 (ENSSVLG00005003762) #25	MTX2 (ENSSVLG00005003812) #27	ENSSVLG00005003881 ##28	ENSSVLG00005003903 #29	AGPS (ENSSVLG00005003959) #30	ENSSVLG00005003996 #32	ENSSVLG00005004006 #32	ENSSVLG00005004018 #32	PDE11A (ENSSVLG00005004050) #33	ENSSVLG00005004113	RBM45 (ENSSVLG00005004137) #34	OSBPL6 (ENSSVLG00005004465) #35	PRKRA (ENSSVLG00005005027) #36	PJVK (ENSSVLG00005005095) #37
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Kangaroo rat	MODERN SPECIES	324	ENSDORG00000008681	Sp9 (ENSDORG00000025534)	Cir1 (ENSDORG00000013676)	ENSDORG00000013682 #7	Gpr155 (ENSDORG00000013683) #8	ENSDORG00000027952 #9	Chrna1 (ENSDORG00000001136) #10	Chn1 (ENSDORG00000002182) #11	Atf2 (ENSDORG00000024409) #12	Atp5g3 (ENSDORG00000012973) #14	Lnpk (ENSDORG00000015736) #15	Evx2 (ENSDORG00000009432) #16	Hoxd12 (ENSDORG00000009434) #18	ENSDORG00000029219 #19	Hoxd10 (ENSDORG00000009436) #20	ENSDORG00000027655 #22	Hoxd4 (ENSDORG00000028681) #23	Hoxd3 (ENSDORG00000029389) #24	Hoxd1 (ENSDORG00000009445) #25	Mtx2 (ENSDORG00000003848) #27	Hnrnpa3 (ENSDORG00000011155) ##28	Nfe2l2 (ENSDORG00000030173) #29	Agps (ENSDORG00000006480) #30	ENSDORG00000028567 #32	ENSDORG00000028697 #32	ENSDORG00000023150 #32	Cyct (ENSDORG00000004101)	Rbm45 (ENSDORG00000015831) #34	Osbpl6 (ENSDORG00000001912) #35	Prkra (ENSDORG00000013338) #36	Pjvk (ENSDORG00000013339) #37
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116 #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37	ENSGT00940000159964
Muroidea	ANCESTRAL SPECIES	34	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a.a #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a.a #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00940000171387	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000154808.a.a	ENSGT00940000153147.m.a.a.a.b.a.b.p ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a.a #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36
Chinese hamster chok1gshd	MODERN SPECIES	188	Gpr155 (ENSCGRG00001014219) #8	ENSCGRG00001021853	Chrna1 (ENSCGRG00001020291) #10	ENSCGRG00001019803	Chn1 (ENSCGRG00001019152) #11	Atf2 (ENSCGRG00001015584) #12	Atp5g3 (ENSCGRG00001012041) #14	Lnpk (ENSCGRG00001011515) #15	ENSCGRG00001006802	Evx2 (ENSCGRG00001003649) #16	Hoxd13 (ENSCGRG00001001661) #17	Hoxd12 (ENSCGRG00001000877) #18	Hoxd11 (ENSCGRG00001010386) #19	Hoxd10 (ENSCGRG00001008302) #20	Hoxd9 (ENSCGRG00001005991) #21	Hoxd8 (ENSCGRG00001013130) #22	Hoxd4 (ENSCGRG00001012360) #23	Hoxd3 (ENSCGRG00001011863) #24	Hoxd1 (ENSCGRG00001011572) #25	ENSCGRG00001014512	Mtx2 (ENSCGRG00001014247) #27	ENSCGRG00001003235 ##13	ENSCGRG00001008592 ##28	Nfe2l2 (ENSCGRG00001005715) #29	Agps (ENSCGRG00001003863) #30	Ttc30b (ENSCGRG00001002157) #32	Ttc30a1 (ENSCGRG00001000892) #32	ENSCGRG00001003072	Pde11a (ENSCGRG00001011422) #33	Cyct (ENSCGRG00001008096)	Rbm45 (ENSCGRG00001005759) #34
Golden Hamster	MODERN SPECIES	618	Scrn3 (ENSMAUG00000020703) #7	Gpr155 (ENSMAUG00000019481) #8	ENSMAUG00000019796	Chrna1 (ENSMAUG00000017924) #10	Chn1 (ENSMAUG00000018455) #11	Atf2 (ENSMAUG00000018366) #12	Atp5g3 (ENSMAUG00000017685) #14	ENSMAUG00000020495	Lnpk (ENSMAUG00000018821) #15	Evx2 (ENSMAUG00000020383) #16	Hoxd13 (ENSMAUG00000017185) #17	Hoxd12 (ENSMAUG00000018416) #18	ENSMAUG00000020249 #19	Hoxd10 (ENSMAUG00000016731) #20	Hoxd9 (ENSMAUG00000018538) #21	Hoxd8 (ENSMAUG00000018092) #22	Hoxd4 (ENSMAUG00000018545) #23	Hoxd3 (ENSMAUG00000018318) #24	Hoxd1 (ENSMAUG00000018401) #25	Mtx2 (ENSMAUG00000017870) #27	ENSMAUG00000017462	Nfe2l2 (ENSMAUG00000017700) #29	Agps (ENSMAUG00000017317) #30	Pde11a (ENSMAUG00000021257) #33	Cyct (ENSMAUG00000016722)	Rbm45 (ENSMAUG00000016948) #34	Osbpl6 (ENSMAUG00000018609) #35	Prkra (ENSMAUG00000019631) #36	Pjvk (ENSMAUG00000018018) #37	Fkbp7 (ENSMAUG00000016606)	Plekha3 (ENSMAUG00000019341)
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a.a #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37
Prairie vole	MODERN SPECIES	12	Cir1 (ENSMOCG00000017545)	Scrn3 (ENSMOCG00000018966) #7	Gpr155 (ENSMOCG00000003950) #8	ENSMOCG00000014660	Chrna1 (ENSMOCG00000020367) #10	Chn1 (ENSMOCG00000005574) #11	Atf2 (ENSMOCG00000015301) #12	ENSMOCG00000012786 #14	Lnpk (ENSMOCG00000022345) #15	Evx2 (ENSMOCG00000010466) #16	Hoxd13 (ENSMOCG00000014618) #17	Hoxd12 (ENSMOCG00000018953) #18	Hoxd11 (ENSMOCG00000019226) #19	Hoxd10 (ENSMOCG00000006052) #20	Hoxd9 (ENSMOCG00000005870) #21	Hoxd8 (ENSMOCG00000022746) #22	Hoxd3 (ENSMOCG00000022552) #24	Hoxd4 (ENSMOCG00000013646) #23	Hoxd1 (ENSMOCG00000014086) #25	Mtx2 (ENSMOCG00000017110) #27	ENSMOCG00000019409 ##28	Nfe2l2 (ENSMOCG00000020760) #29	Agps (ENSMOCG00000017476) #30	Ttc30b (ENSMOCG00000001580) #32	ENSMOCG00000001098	Ttc30a2 (ENSMOCG00000002802) #32	Pde11a (ENSMOCG00000005959) #33	Cyct (ENSMOCG00000021506)	Rbm45 (ENSMOCG00000017295) #34	Osbpl6 (ENSMOCG00000017155) #35	Prkra (ENSMOCG00000004548) #36
Northern American deer mouse	MODERN SPECIES	17	Scrn3 (ENSPEMG00000022424) #7	Gpr155 (ENSPEMG00000022602) #8	Wipf1 (ENSPEMG00000013848) #9	Chrna1 (ENSPEMG00000012571) #10	Chn1 (ENSPEMG00000022535) #11	Atf2 (ENSPEMG00000021625) #12	Atp5g3 (ENSPEMG00000023766) #14	ENSPEMG00000008662	Lnpk (ENSPEMG00000017827) #15	Evx2 (ENSPEMG00000022145) #16	Hoxd13 (ENSPEMG00000022412) #17	Hoxd12 (ENSPEMG00000019240) #18	ENSPEMG00000018816 #19	Hoxd10 (ENSPEMG00000030445) #20	Hoxd9 (ENSPEMG00000006162) #21	ENSPEMG00000028623 #22	ENSPEMG00000029322	Hoxd4 (ENSPEMG00000024627) #23	Hoxd3 (ENSPEMG00000028862) #24	Hoxd1 (ENSPEMG00000021389) #25	Mtx2 (ENSPEMG00000022093) #27	Hnrnpa3 (ENSPEMG00000021885) ##28	Nfe2l2 (ENSPEMG00000023181) #29	Agps (ENSPEMG00000010561) #30	ENSPEMG00000023662	Ttc30b (ENSPEMG00000001902) #32	Ttc30a1 (ENSPEMG00000025624) #32	Pde11a (ENSPEMG00000021597) #33	Cyct (ENSPEMG00000028091)	Rbm45 (ENSPEMG00000002470) #34	Osbpl6 (ENSPEMG00000010580) #35
Murinae	ANCESTRAL SPECIES	1	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a.b #32	ENSGT00390000010116.y.a.a #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36
Mus	ANCESTRAL SPECIES	1	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##28	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a.b #32	ENSGT00390000010116.y.a.a #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35
Mus_A	ANCESTRAL SPECIES		ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##28	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a.b #32	ENSGT00390000010116.y.a.a #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35
Mus_B	ANCESTRAL SPECIES	1	ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.y.b #32	ENSGT00390000010116.y.a.b #32	ENSGT00390000010116.y.a.a #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36
Mouse	MODERN SPECIES	11	Cir1 (ENSMUSG00000041777)	Scrn3 (ENSMUSG00000008226) #7	Gpr155 (ENSMUSG00000041762) #8	Wipf1 (ENSMUSG00000075284) #9	Chrna1 (ENSMUSG00000027107) #10	Chn1 (ENSMUSG00000056486) #11	Atf2 (ENSMUSG00000027104) #12	Atp5g3 (ENSMUSG00000018770) #14	Lnpk (ENSMUSG00000009207) #15	Evx2 (ENSMUSG00000001815) #16	Hoxd13 (ENSMUSG00000001819) #17	Hoxd12 (ENSMUSG00000001823) #18	Hoxd11 (ENSMUSG00000042499) #19	Hoxd10 (ENSMUSG00000050368) #20	Hoxd9 (ENSMUSG00000043342) #21	Hoxd8 (ENSMUSG00000027102) #22	Hoxd3 (ENSMUSG00000079277) #24	Hoxd4 (ENSMUSG00000101174) #23	Hoxd1 (ENSMUSG00000042448) #25	Mtx2 (ENSMUSG00000027099) #27	Hnrnpa3 (ENSMUSG00000059005) ##28	Nfe2l2 (ENSMUSG00000015839) #29	Agps (ENSMUSG00000042410) #30	Ttc30b (ENSMUSG00000075273) #32	Ttc30a2 (ENSMUSG00000075272) #32	Ttc30a1 (ENSMUSG00000075271) #32	Pde11a (ENSMUSG00000075270) #33	Cyct (ENSMUSG00000056436)	Rbm45 (ENSMUSG00000042369) #34	Osbpl6 (ENSMUSG00000042359) #35	Prkra (ENSMUSG00000002731) #36
Mus_C	ANCESTRAL SPECIES		ENSGT00730000111135	ENSGT00390000013474.a #7	ENSGT00390000004153 #8	ENSGT00910000144296 #9	ENSGT00940000156851 #10	ENSGT01030000234635.a.b.a.b.b.a.a #11	ENSGT00940000156582 #12	ENSGT00940000154298.a.a #14	ENSGT00390000001859 #15	ENSGT00940000161025 #16	ENSGT00940000161457 #17	ENSGT00940000159938 #18	ENSGT00940000161308 #19	ENSGT00940000158266 #20	ENSGT00940000161503 #21	ENSGT00940000161653 #22	ENSGT00940000157270 #23	ENSGT00940000160027 #24	ENSGT00940000161892 #25	ENSGT00950000182919.C #27	ENSGT00940000153147.m.b ##28	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##28	ENSGT00950000182892.a.a.b #29	ENSGT00940000156112 #30	ENSGT00390000010116.y.b #32	ENSGT00940000162151 #33	ENSGT00940000157883.a.b.e.a	ENSGT00680000100059 #34	ENSGT00940000156791 #35	ENSGT00940000157618 #36	ENSGT00950000183140.a.b #37
Steppe mouse	MODERN SPECIES	3326	Gpr155 (ENSMSIG00000006975) #8	Wipf1 (ENSMSIG00000006899) #9	Chrna1 (ENSMSIG00000006852) #10	Chn1 (ENSMSIG00000006692) #11	ENSMSIG00000006659	Atf2 (ENSMSIG00000006546) #12	Atp5g3 (ENSMSIG00000006512) #14	ENSMSIG00000006495	Lnpk (ENSMSIG00000006386) #15	Evx2 (ENSMSIG00000006361) #16	Hoxd13 (ENSMSIG00000006348) #17	Hoxd12 (ENSMSIG00000006333) #18	Hoxd11 (ENSMSIG00000006326) #19	Hoxd10 (ENSMSIG00000006313) #20	Hoxd9 (ENSMSIG00000006304) #21	Hoxd8 (ENSMSIG00000006283) #22	ENSMSIG00000006186 #23	Hoxd3 (ENSMSIG00000006158) #24	Hoxd1 (ENSMSIG00000006137) #25	Mtx2 (ENSMSIG00000006053) #27	ENSMSIG00000006005	ENSMSIG00000005981	ENSMSIG00000005709 ##28	Nfe2l2 (ENSMSIG00000005673) #29
spretus	MODERN SPECIES	11	Cir1 (MGP_SPRETEiJ_G0024580)	Scrn3 (MGP_SPRETEiJ_G0024581) #7	Gpr155 (MGP_SPRETEiJ_G0024582) #8	Wipf1 (MGP_SPRETEiJ_G0024583) #9	Chrna1 (MGP_SPRETEiJ_G0024584) #10	Chn1 (MGP_SPRETEiJ_G0024585) #11	Atf2 (MGP_SPRETEiJ_G0024586) #12	Atp5g3 (MGP_SPRETEiJ_G0024587) #14	Lnpk (MGP_SPRETEiJ_G0024588) #15	Evx2 (MGP_SPRETEiJ_G0024589) #16	Hoxd13 (MGP_SPRETEiJ_G0024590) #17	Hoxd12 (MGP_SPRETEiJ_G0024591) #18	Hoxd11 (MGP_SPRETEiJ_G0024592) #19	Hoxd10 (MGP_SPRETEiJ_G0024593) #20	Hoxd9 (MGP_SPRETEiJ_G0024594) #21	Hoxd8 (MGP_SPRETEiJ_G0024595) #22	Hoxd3 (MGP_SPRETEiJ_G0024596) #24	Hoxd4 (MGP_SPRETEiJ_G0024597) #23	MGP_SPRETEiJ_G0024598 #23	Hoxd1 (MGP_SPRETEiJ_G0024599) #25	Mtx2 (MGP_SPRETEiJ_G0024600) #27	MGP_SPRETEiJ_G0024601 ##28	Nfe2l2 (MGP_SPRETEiJ_G0024602) #29	Agps (MGP_SPRETEiJ_G0024603) #30	MGP_SPRETEiJ_G0024604 #32	Pde11a (MGP_SPRETEiJ_G0024605) #33	Cyct (MGP_SPRETEiJ_G0024606)	Rbm45 (MGP_SPRETEiJ_G0024607) #34	Osbpl6 (MGP_SPRETEiJ_G0024608) #35	Prkra (MGP_SPRETEiJ_G0024609) #36	Pjvk (MGP_SPRETEiJ_G0024610) #37
Ryukyu mouse	MODERN SPECIES	11	Cir1 (MGP_CAROLIEiJ_G0023657)	Scrn3 (MGP_CAROLIEiJ_G0023658) #7	Gpr155 (MGP_CAROLIEiJ_G0023659) #8	Wipf1 (MGP_CAROLIEiJ_G0023660) #9	Chrna1 (MGP_CAROLIEiJ_G0023661) #10	Chn1 (MGP_CAROLIEiJ_G0023662) #11	Atf2 (MGP_CAROLIEiJ_G0023663) #12	Atp5g3 (MGP_CAROLIEiJ_G0023664) #14	Lnpk (MGP_CAROLIEiJ_G0023665) #15	Evx2 (MGP_CAROLIEiJ_G0023666) #16	Hoxd13 (MGP_CAROLIEiJ_G0023667) #17	Hoxd12 (MGP_CAROLIEiJ_G0023668) #18	Hoxd11 (MGP_CAROLIEiJ_G0023669) #19	Hoxd10 (MGP_CAROLIEiJ_G0023670) #20	Hoxd9 (MGP_CAROLIEiJ_G0023671) #21	Hoxd8 (MGP_CAROLIEiJ_G0023672) #22	Hoxd3 (MGP_CAROLIEiJ_G0023673) #24	Hoxd4 (MGP_CAROLIEiJ_G0023674) #23	MGP_CAROLIEiJ_G0023675 #23	Hoxd1 (MGP_CAROLIEiJ_G0023676) #25	Mtx2 (MGP_CAROLIEiJ_G0023677) #27	MGP_CAROLIEiJ_G0023678 ##28	Nfe2l2 (MGP_CAROLIEiJ_G0023679) #29	Agps (MGP_CAROLIEiJ_G0023680) #30	MGP_CAROLIEiJ_G0023681 #32	MGP_CAROLIEiJ_G0023682 #32	Pde11a (MGP_CAROLIEiJ_G0023683) #33	MGP_CAROLIEiJ_G0023684	Cyct (MGP_CAROLIEiJ_G0023685)	Rbm45 (MGP_CAROLIEiJ_G0023686) #34	Osbpl6 (MGP_CAROLIEiJ_G0023687) #35
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025109	Scrn3 (MGP_PahariEiJ_G0025110) #7	Gpr155 (MGP_PahariEiJ_G0025111) #8	Wipf1 (MGP_PahariEiJ_G0025112) #9	Chrna1 (MGP_PahariEiJ_G0025113) #10	MGP_PahariEiJ_G0025114 #11	Atf2 (MGP_PahariEiJ_G0025115) #12	Atp5g3 (MGP_PahariEiJ_G0025116) #14	Lnpk (MGP_PahariEiJ_G0025117) #15	Evx2 (MGP_PahariEiJ_G0025118) #16	Hoxd13 (MGP_PahariEiJ_G0025119) #17	Hoxd12 (MGP_PahariEiJ_G0025120) #18	Hoxd11 (MGP_PahariEiJ_G0025121) #19	Hoxd10 (MGP_PahariEiJ_G0025122) #20	Hoxd9 (MGP_PahariEiJ_G0025123) #21	Hoxd8 (MGP_PahariEiJ_G0025124) #22	Hoxd3 (MGP_PahariEiJ_G0025125) #24	Hoxd4 (MGP_PahariEiJ_G0025126) #23	MGP_PahariEiJ_G0025127 #23	Hoxd1 (MGP_PahariEiJ_G0025128) #25	Mtx2 (MGP_PahariEiJ_G0025129) #27	Hnrnpa3 (MGP_PahariEiJ_G0025130) ##28	Nfe2l2 (MGP_PahariEiJ_G0025131) #29	MGP_PahariEiJ_G0025132 #30	MGP_PahariEiJ_G0025133 #32	MGP_PahariEiJ_G0025134 #32	Pde11a (MGP_PahariEiJ_G0025135) #33	Cyct (MGP_PahariEiJ_G0025136)	Rbm45 (MGP_PahariEiJ_G0025137) #34	Osbpl6 (MGP_PahariEiJ_G0025138) #35	Prkra (MGP_PahariEiJ_G0025139) #36
Rat	MODERN SPECIES	13	Gpr155 (ENSRNOG00000018485) #8	Wipf1 (ENSRNOG00000018406) #9	Rbx1-ps2 (ENSRNOG00000067031)	Chrna1 (ENSRNOG00000018286) #10	Chn1 (ENSRNOG00000017939) #11	ENSRNOG00000068403	Atf2 (ENSRNOG00000001597) #12	Atp5mc3 (ENSRNOG00000001596) #14	Lnpk (ENSRNOG00000001593) #15	Evx2 (ENSRNOG00000001589) #16	Hoxd13 (ENSRNOG00000001588) #17	Hoxd12 (ENSRNOG00000001587) #18	Hoxd11 (ENSRNOG00000069591) #19	Hoxd10 (ENSRNOG00000001581) #20	Hoxd9 (ENSRNOG00000001580) #21	Hoxd8 (ENSRNOG00000071108) #22	Hoxd4 (ENSRNOG00000001578) #23	AABR07052559.1 (ENSRNOG00000053144)	Hoxd3 (ENSRNOG00000001577) #24	Hoxd1 (ENSRNOG00000001572) #25	Mtx2 (ENSRNOG00000001559) #27	Hnrnpa3 (ENSRNOG00000052968) ##28	Nfe2l2 (ENSRNOG00000001548) #29	ENSRNOG00000066660	Agps (ENSRNOG00000001547) #30	Ttc30b (ENSRNOG00000059460) #32	Ttc30a1 (ENSRNOG00000052519) #32	Ttc30a (ENSRNOG00000069321) #32	Cyct (ENSRNOG00000024457) #33	Rbm45 (ENSRNOG00000010595) #34	Osbpl6 (ENSRNOG00000010812) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1735	Cir1 (ENSNGAG00000023091)	Scrn3 (ENSNGAG00000008783) #7	Gpr155 (ENSNGAG00000019246) #8	ENSNGAG00000022478 #9	Chrna1 (ENSNGAG00000023534) #10	Chn1 (ENSNGAG00000021893) #11	Atf2 (ENSNGAG00000003870) #12	Atp5g3 (ENSNGAG00000004748) #14	Lnpk (ENSNGAG00000023466) #15	Evx2 (ENSNGAG00000023877) #16	Hoxd13 (ENSNGAG00000023727) #17	Hoxd12 (ENSNGAG00000023455) #18	Hoxd11 (ENSNGAG00000023438) #19	Hoxd10 (ENSNGAG00000023868) #20	Hoxd9 (ENSNGAG00000011105) #21	Hoxd8 (ENSNGAG00000011799) #22	Hoxd4 (ENSNGAG00000020270) #23	Hoxd3 (ENSNGAG00000021055) #24	Hoxd1 (ENSNGAG00000021714) #25	Mtx2 (ENSNGAG00000020555) #27	ENSNGAG00000021745 ##28	Nfe2l2 (ENSNGAG00000022809) #29	Agps (ENSNGAG00000020263) #30	ENSNGAG00000022555 #32	Pde11a (ENSNGAG00000023493) #33	Cyct (ENSNGAG00000023547)	ENSNGAG00000021016	Rbm45 (ENSNGAG00000023886) #34	Osbpl6 (ENSNGAG00000014527) #35	Prkra (ENSNGAG00000021816) #36	Pjvk (ENSNGAG00000022020) #37